Multiple sequence alignment - TraesCS7A01G038600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G038600 chr7A 100.000 9536 0 0 1 9536 17366590 17357055 0.000000e+00 17610.0
1 TraesCS7A01G038600 chr7A 96.394 832 23 4 8711 9536 333702336 333703166 0.000000e+00 1363.0
2 TraesCS7A01G038600 chr7A 88.553 463 43 7 8711 9163 652419799 652420261 3.890000e-153 553.0
3 TraesCS7A01G038600 chr7A 94.737 152 7 1 1 151 5695689 5695840 1.600000e-57 235.0
4 TraesCS7A01G038600 chr7A 85.612 139 13 3 377 515 18056260 18056129 1.290000e-28 139.0
5 TraesCS7A01G038600 chr7A 75.719 313 56 16 8700 9000 69030650 69030346 1.290000e-28 139.0
6 TraesCS7A01G038600 chr7A 85.294 68 8 2 6142 6207 62178400 62178467 1.720000e-07 69.4
7 TraesCS7A01G038600 chr7D 95.913 3964 109 19 2690 6606 17869442 17865485 0.000000e+00 6373.0
8 TraesCS7A01G038600 chr7D 97.405 2081 48 4 6638 8718 17865487 17863413 0.000000e+00 3539.0
9 TraesCS7A01G038600 chr7D 95.010 1022 44 4 1672 2687 17870560 17869540 0.000000e+00 1598.0
10 TraesCS7A01G038600 chr7D 89.023 1157 66 33 208 1332 17872023 17870896 0.000000e+00 1376.0
11 TraesCS7A01G038600 chr7D 82.099 162 17 7 9190 9344 276158866 276158710 2.800000e-25 128.0
12 TraesCS7A01G038600 chr4A 91.275 4298 210 50 2382 6605 715713841 715718047 0.000000e+00 5707.0
13 TraesCS7A01G038600 chr4A 94.601 3019 132 16 1690 4694 715880801 715877800 0.000000e+00 4643.0
14 TraesCS7A01G038600 chr4A 93.289 2086 115 15 6636 8711 715718038 715720108 0.000000e+00 3053.0
15 TraesCS7A01G038600 chr4A 91.212 1889 116 20 537 2396 715711253 715713120 0.000000e+00 2523.0
16 TraesCS7A01G038600 chr4A 94.559 919 26 1 4691 5585 715877400 715876482 0.000000e+00 1399.0
17 TraesCS7A01G038600 chr4A 92.576 687 28 13 5584 6251 715876400 715875718 0.000000e+00 965.0
18 TraesCS7A01G038600 chr4A 90.779 629 47 4 690 1315 715881417 715880797 0.000000e+00 830.0
19 TraesCS7A01G038600 chr4A 91.587 523 32 8 8712 9226 628213683 628214201 0.000000e+00 712.0
20 TraesCS7A01G038600 chr4A 89.366 536 44 10 8711 9238 628317837 628318367 0.000000e+00 662.0
21 TraesCS7A01G038600 chr4A 84.211 342 26 8 164 478 715884186 715883846 3.350000e-79 307.0
22 TraesCS7A01G038600 chr4A 96.689 151 5 0 1 151 602180701 602180851 1.590000e-62 252.0
23 TraesCS7A01G038600 chr4A 94.771 153 6 1 1 151 100629814 100629662 4.450000e-58 237.0
24 TraesCS7A01G038600 chr4A 92.667 150 7 2 330 475 715711090 715711239 7.500000e-51 213.0
25 TraesCS7A01G038600 chr4A 86.667 150 13 4 377 526 714728822 714728964 9.910000e-35 159.0
26 TraesCS7A01G038600 chr4A 85.714 154 14 6 537 690 715883835 715883690 1.280000e-33 156.0
27 TraesCS7A01G038600 chr4A 100.000 29 0 0 1280 1308 715712033 715712061 5.000000e-03 54.7
28 TraesCS7A01G038600 chr2B 81.367 2136 302 63 3912 5974 629103341 629105453 0.000000e+00 1652.0
29 TraesCS7A01G038600 chr2B 85.208 987 115 20 7060 8028 629024126 629025099 0.000000e+00 985.0
30 TraesCS7A01G038600 chr2B 87.368 855 94 10 7159 8010 629106501 629107344 0.000000e+00 968.0
31 TraesCS7A01G038600 chr2B 80.890 1214 167 34 4800 5974 629022021 629023208 0.000000e+00 896.0
32 TraesCS7A01G038600 chr2B 78.709 1038 157 44 3560 4544 629020544 629021570 1.350000e-177 634.0
33 TraesCS7A01G038600 chr2B 85.935 583 64 14 6497 7064 629105760 629106339 2.950000e-169 606.0
34 TraesCS7A01G038600 chr2B 82.353 544 71 17 6527 7055 629023532 629024065 5.250000e-122 449.0
35 TraesCS7A01G038600 chr2B 77.345 693 140 12 5148 5829 629123362 629124048 2.500000e-105 394.0
36 TraesCS7A01G038600 chr2B 86.885 305 37 1 8186 8490 629107403 629107704 1.190000e-88 339.0
37 TraesCS7A01G038600 chr2B 84.175 297 44 2 8200 8496 629025162 629025455 1.570000e-72 285.0
38 TraesCS7A01G038600 chr2B 85.321 218 28 3 1782 1999 629018197 629018410 1.250000e-53 222.0
39 TraesCS7A01G038600 chr2D 81.209 2150 286 64 3912 5975 529545121 529547238 0.000000e+00 1624.0
40 TraesCS7A01G038600 chr2D 88.024 835 85 11 7173 8003 529548228 529549051 0.000000e+00 974.0
41 TraesCS7A01G038600 chr2D 84.765 978 119 19 7060 8020 529537807 529538771 0.000000e+00 953.0
42 TraesCS7A01G038600 chr2D 81.006 1153 158 31 4800 5916 529535693 529536820 0.000000e+00 859.0
43 TraesCS7A01G038600 chr2D 78.716 1090 173 38 3560 4605 529534350 529535424 0.000000e+00 673.0
44 TraesCS7A01G038600 chr2D 86.828 577 63 10 6498 7064 529547607 529548180 4.860000e-177 632.0
45 TraesCS7A01G038600 chr2D 84.644 547 62 17 6527 7055 529537205 529537747 8.480000e-145 525.0
46 TraesCS7A01G038600 chr2D 77.089 694 142 12 5148 5830 529557006 529557693 1.500000e-102 385.0
47 TraesCS7A01G038600 chr2D 86.885 305 37 1 8186 8490 529549098 529549399 1.190000e-88 339.0
48 TraesCS7A01G038600 chr2D 86.385 213 26 2 1786 1998 529531857 529532066 7.450000e-56 230.0
49 TraesCS7A01G038600 chr2A 80.749 2135 290 75 3912 5975 674047543 674049627 0.000000e+00 1554.0
50 TraesCS7A01G038600 chr2A 96.034 832 26 4 8711 9536 503236746 503237576 0.000000e+00 1347.0
51 TraesCS7A01G038600 chr2A 95.585 838 26 5 8709 9536 503228781 503229617 0.000000e+00 1332.0
52 TraesCS7A01G038600 chr2A 85.197 966 118 15 7061 8011 674050548 674051503 0.000000e+00 968.0
53 TraesCS7A01G038600 chr2A 84.646 990 116 22 7060 8028 674031015 674031989 0.000000e+00 953.0
54 TraesCS7A01G038600 chr2A 79.773 1236 176 43 4800 5974 674028860 674030082 0.000000e+00 830.0
55 TraesCS7A01G038600 chr2A 77.927 1119 182 45 3560 4633 674027515 674028613 1.040000e-178 638.0
56 TraesCS7A01G038600 chr2A 86.949 567 62 10 6497 7054 674049917 674050480 2.260000e-175 627.0
57 TraesCS7A01G038600 chr2A 84.826 547 56 19 6527 7055 674030418 674030955 8.480000e-145 525.0
58 TraesCS7A01G038600 chr2A 96.053 152 5 1 1 151 11016665 11016816 7.400000e-61 246.0
59 TraesCS7A01G038600 chr2A 86.124 209 24 5 1792 1999 674024870 674025074 4.480000e-53 220.0
60 TraesCS7A01G038600 chr2A 81.046 153 22 7 9231 9379 526813440 526813589 2.180000e-21 115.0
61 TraesCS7A01G038600 chr3A 95.187 831 31 7 8712 9536 351550046 351549219 0.000000e+00 1304.0
62 TraesCS7A01G038600 chr3A 86.615 650 72 9 8711 9351 106314762 106315405 0.000000e+00 704.0
63 TraesCS7A01G038600 chr3A 76.923 663 108 20 7162 7815 25406300 25406926 1.530000e-87 335.0
64 TraesCS7A01G038600 chr3A 95.395 152 6 1 1 151 676754116 676753965 3.440000e-59 241.0
65 TraesCS7A01G038600 chr1A 85.053 843 89 14 8710 9536 92470765 92469944 0.000000e+00 824.0
66 TraesCS7A01G038600 chr1A 96.053 152 5 1 1 151 585381976 585382127 7.400000e-61 246.0
67 TraesCS7A01G038600 chr1A 94.737 152 7 1 1 151 13376768 13376617 1.600000e-57 235.0
68 TraesCS7A01G038600 chrUn 92.807 431 22 4 8288 8718 50879841 50879420 4.890000e-172 616.0
69 TraesCS7A01G038600 chrUn 90.244 287 19 4 8432 8718 50897671 50897394 5.440000e-97 366.0
70 TraesCS7A01G038600 chr1B 77.405 655 105 17 7168 7815 175892759 175892141 5.480000e-92 350.0
71 TraesCS7A01G038600 chr5A 95.395 152 6 1 1 151 708563569 708563720 3.440000e-59 241.0
72 TraesCS7A01G038600 chr5D 94.737 152 7 1 1 151 340751315 340751164 1.600000e-57 235.0
73 TraesCS7A01G038600 chr3B 94.074 135 8 0 9244 9378 248608456 248608590 1.260000e-48 206.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G038600 chr7A 17357055 17366590 9535 True 17610.000000 17610 100.000000 1 9536 1 chr7A.!!$R1 9535
1 TraesCS7A01G038600 chr7A 333702336 333703166 830 False 1363.000000 1363 96.394000 8711 9536 1 chr7A.!!$F3 825
2 TraesCS7A01G038600 chr7D 17863413 17872023 8610 True 3221.500000 6373 94.337750 208 8718 4 chr7D.!!$R2 8510
3 TraesCS7A01G038600 chr4A 715711090 715720108 9018 False 2310.140000 5707 93.688600 330 8711 5 chr4A.!!$F5 8381
4 TraesCS7A01G038600 chr4A 715875718 715884186 8468 True 1383.333333 4643 90.406667 164 6251 6 chr4A.!!$R2 6087
5 TraesCS7A01G038600 chr4A 628213683 628214201 518 False 712.000000 712 91.587000 8712 9226 1 chr4A.!!$F2 514
6 TraesCS7A01G038600 chr4A 628317837 628318367 530 False 662.000000 662 89.366000 8711 9238 1 chr4A.!!$F3 527
7 TraesCS7A01G038600 chr2B 629103341 629107704 4363 False 891.250000 1652 85.388750 3912 8490 4 chr2B.!!$F3 4578
8 TraesCS7A01G038600 chr2B 629018197 629025455 7258 False 578.500000 985 82.776000 1782 8496 6 chr2B.!!$F2 6714
9 TraesCS7A01G038600 chr2B 629123362 629124048 686 False 394.000000 394 77.345000 5148 5829 1 chr2B.!!$F1 681
10 TraesCS7A01G038600 chr2D 529545121 529549399 4278 False 892.250000 1624 85.736500 3912 8490 4 chr2D.!!$F3 4578
11 TraesCS7A01G038600 chr2D 529531857 529538771 6914 False 648.000000 953 83.103200 1786 8020 5 chr2D.!!$F2 6234
12 TraesCS7A01G038600 chr2D 529557006 529557693 687 False 385.000000 385 77.089000 5148 5830 1 chr2D.!!$F1 682
13 TraesCS7A01G038600 chr2A 503236746 503237576 830 False 1347.000000 1347 96.034000 8711 9536 1 chr2A.!!$F3 825
14 TraesCS7A01G038600 chr2A 503228781 503229617 836 False 1332.000000 1332 95.585000 8709 9536 1 chr2A.!!$F2 827
15 TraesCS7A01G038600 chr2A 674047543 674051503 3960 False 1049.666667 1554 84.298333 3912 8011 3 chr2A.!!$F6 4099
16 TraesCS7A01G038600 chr2A 674024870 674031989 7119 False 633.200000 953 82.659200 1792 8028 5 chr2A.!!$F5 6236
17 TraesCS7A01G038600 chr3A 351549219 351550046 827 True 1304.000000 1304 95.187000 8712 9536 1 chr3A.!!$R1 824
18 TraesCS7A01G038600 chr3A 106314762 106315405 643 False 704.000000 704 86.615000 8711 9351 1 chr3A.!!$F2 640
19 TraesCS7A01G038600 chr3A 25406300 25406926 626 False 335.000000 335 76.923000 7162 7815 1 chr3A.!!$F1 653
20 TraesCS7A01G038600 chr1A 92469944 92470765 821 True 824.000000 824 85.053000 8710 9536 1 chr1A.!!$R2 826
21 TraesCS7A01G038600 chr1B 175892141 175892759 618 True 350.000000 350 77.405000 7168 7815 1 chr1B.!!$R1 647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 0.029700 AAAACGGTTGCAACGTAGGC 59.970 50.000 22.67 8.02 44.83 3.93 F
87 88 0.110486 TGAAGTGCAAAGGGGTCTCC 59.890 55.000 0.00 0.00 0.00 3.71 F
108 109 0.179073 CAAGCCACGTATCCTCCCAG 60.179 60.000 0.00 0.00 0.00 4.45 F
1438 3785 0.110644 CCTTCGACGCTTCACTTTGC 60.111 55.000 0.00 0.00 0.00 3.68 F
2404 5598 0.036388 TTCATCGGGGAGTTGACTGC 60.036 55.000 0.00 0.00 0.00 4.40 F
3700 8179 0.817634 CCCATTGCCGGCGATAAGAA 60.818 55.000 28.81 13.21 0.00 2.52 F
4565 9104 2.978156 AGAAAGGGCAGGTTTCATCA 57.022 45.000 8.39 0.00 36.53 3.07 F
5947 11251 2.857152 GCATCGTGAACAAAAAGCAACA 59.143 40.909 0.00 0.00 0.00 3.33 F
6920 12315 3.683365 TTGTGATGTCTTGCAGAGCTA 57.317 42.857 0.00 0.00 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1423 3770 0.453282 CCATGCAAAGTGAAGCGTCG 60.453 55.000 0.00 0.00 0.00 5.12 R
1438 3785 0.934496 CGCCACACGGTATTACCATG 59.066 55.000 13.22 10.36 37.49 3.66 R
1524 3871 0.951558 ACTGCCATCAAACCACGTTC 59.048 50.000 0.00 0.00 0.00 3.95 R
2721 6558 1.218704 AGCCCCTATGAATGCACCAAT 59.781 47.619 0.00 0.00 0.00 3.16 R
3788 8268 2.421619 CAAGTGAAGAAGAGCTCCCAC 58.578 52.381 10.93 10.82 33.11 4.61 R
5468 10649 1.780309 TGGGTGTCTGGGAAGTCAAAT 59.220 47.619 0.00 0.00 0.00 2.32 R
6427 11795 2.356330 CCCGGTAACCCACATGTTGTAT 60.356 50.000 0.00 0.00 0.00 2.29 R
7616 13097 1.081906 GTGCACAACACGGATGCTG 60.082 57.895 13.17 0.00 40.07 4.41 R
8579 14069 2.168728 ACGAATCTCTACCCCAAGAAGC 59.831 50.000 0.00 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.561503 GAGTGGATTGTAAAACGGTTGC 58.438 45.455 0.00 0.00 0.00 4.17
22 23 2.952978 AGTGGATTGTAAAACGGTTGCA 59.047 40.909 0.00 0.00 0.00 4.08
23 24 3.381908 AGTGGATTGTAAAACGGTTGCAA 59.618 39.130 0.00 0.00 0.00 4.08
24 25 3.487942 GTGGATTGTAAAACGGTTGCAAC 59.512 43.478 21.59 21.59 0.00 4.17
25 26 2.722116 GGATTGTAAAACGGTTGCAACG 59.278 45.455 22.67 19.11 37.36 4.10
27 28 4.525686 GATTGTAAAACGGTTGCAACGTA 58.474 39.130 22.67 8.73 44.83 3.57
28 29 3.589061 TGTAAAACGGTTGCAACGTAG 57.411 42.857 22.67 17.89 44.83 3.51
29 30 2.287373 TGTAAAACGGTTGCAACGTAGG 59.713 45.455 22.67 13.92 44.83 3.18
30 31 0.029700 AAAACGGTTGCAACGTAGGC 59.970 50.000 22.67 8.02 44.83 3.93
31 32 0.816421 AAACGGTTGCAACGTAGGCT 60.816 50.000 22.67 7.00 44.83 4.58
32 33 0.816421 AACGGTTGCAACGTAGGCTT 60.816 50.000 22.67 6.67 44.83 4.35
33 34 1.226030 ACGGTTGCAACGTAGGCTTC 61.226 55.000 22.67 5.87 43.60 3.86
34 35 0.949105 CGGTTGCAACGTAGGCTTCT 60.949 55.000 22.67 0.00 0.00 2.85
35 36 0.796927 GGTTGCAACGTAGGCTTCTC 59.203 55.000 22.67 1.56 0.00 2.87
36 37 1.608283 GGTTGCAACGTAGGCTTCTCT 60.608 52.381 22.67 0.00 0.00 3.10
37 38 2.353406 GGTTGCAACGTAGGCTTCTCTA 60.353 50.000 22.67 0.00 0.00 2.43
38 39 2.649331 TGCAACGTAGGCTTCTCTAC 57.351 50.000 12.59 0.00 37.00 2.59
46 47 4.170292 GTAGGCTTCTCTACGTTGAACA 57.830 45.455 0.00 0.00 31.60 3.18
47 48 3.746045 AGGCTTCTCTACGTTGAACAA 57.254 42.857 0.00 0.00 0.00 2.83
48 49 4.273148 AGGCTTCTCTACGTTGAACAAT 57.727 40.909 0.00 0.00 0.00 2.71
49 50 3.997021 AGGCTTCTCTACGTTGAACAATG 59.003 43.478 0.00 5.37 0.00 2.82
50 51 3.746492 GGCTTCTCTACGTTGAACAATGT 59.254 43.478 15.14 15.14 42.61 2.71
51 52 4.213482 GGCTTCTCTACGTTGAACAATGTT 59.787 41.667 15.83 0.00 40.64 2.71
52 53 5.140177 GCTTCTCTACGTTGAACAATGTTG 58.860 41.667 15.83 14.02 40.64 3.33
53 54 5.277345 GCTTCTCTACGTTGAACAATGTTGT 60.277 40.000 15.83 0.00 44.72 3.32
54 55 6.073980 GCTTCTCTACGTTGAACAATGTTGTA 60.074 38.462 15.83 0.00 41.31 2.41
55 56 6.758593 TCTCTACGTTGAACAATGTTGTAC 57.241 37.500 15.83 0.21 41.31 2.90
56 57 6.274579 TCTCTACGTTGAACAATGTTGTACA 58.725 36.000 15.83 0.00 41.31 2.90
57 58 6.419710 TCTCTACGTTGAACAATGTTGTACAG 59.580 38.462 15.83 8.42 41.31 2.74
58 59 6.274579 TCTACGTTGAACAATGTTGTACAGA 58.725 36.000 15.83 10.23 41.31 3.41
59 60 5.403897 ACGTTGAACAATGTTGTACAGAG 57.596 39.130 2.20 0.00 41.31 3.35
60 61 4.873827 ACGTTGAACAATGTTGTACAGAGT 59.126 37.500 2.20 0.00 41.31 3.24
61 62 6.044046 ACGTTGAACAATGTTGTACAGAGTA 58.956 36.000 2.20 0.00 41.31 2.59
62 63 6.200286 ACGTTGAACAATGTTGTACAGAGTAG 59.800 38.462 2.20 0.00 41.31 2.57
63 64 6.346598 CGTTGAACAATGTTGTACAGAGTAGG 60.347 42.308 2.20 0.00 41.31 3.18
64 65 6.413783 TGAACAATGTTGTACAGAGTAGGA 57.586 37.500 2.20 0.00 41.31 2.94
65 66 7.004555 TGAACAATGTTGTACAGAGTAGGAT 57.995 36.000 2.20 0.00 41.31 3.24
66 67 8.129496 TGAACAATGTTGTACAGAGTAGGATA 57.871 34.615 2.20 0.00 41.31 2.59
67 68 8.758829 TGAACAATGTTGTACAGAGTAGGATAT 58.241 33.333 2.20 0.00 41.31 1.63
68 69 9.601217 GAACAATGTTGTACAGAGTAGGATATT 57.399 33.333 2.20 0.00 41.31 1.28
69 70 8.948631 ACAATGTTGTACAGAGTAGGATATTG 57.051 34.615 8.51 8.51 40.16 1.90
70 71 8.758829 ACAATGTTGTACAGAGTAGGATATTGA 58.241 33.333 14.20 0.00 40.16 2.57
71 72 9.599866 CAATGTTGTACAGAGTAGGATATTGAA 57.400 33.333 0.00 0.00 0.00 2.69
72 73 9.823647 AATGTTGTACAGAGTAGGATATTGAAG 57.176 33.333 0.00 0.00 0.00 3.02
73 74 8.362464 TGTTGTACAGAGTAGGATATTGAAGT 57.638 34.615 0.00 0.00 0.00 3.01
74 75 8.251026 TGTTGTACAGAGTAGGATATTGAAGTG 58.749 37.037 0.00 0.00 0.00 3.16
75 76 6.806751 TGTACAGAGTAGGATATTGAAGTGC 58.193 40.000 0.00 0.00 0.00 4.40
76 77 5.939764 ACAGAGTAGGATATTGAAGTGCA 57.060 39.130 0.00 0.00 0.00 4.57
77 78 6.299805 ACAGAGTAGGATATTGAAGTGCAA 57.700 37.500 0.00 0.00 41.53 4.08
78 79 6.711277 ACAGAGTAGGATATTGAAGTGCAAA 58.289 36.000 0.00 0.00 40.48 3.68
79 80 6.820656 ACAGAGTAGGATATTGAAGTGCAAAG 59.179 38.462 0.00 0.00 40.48 2.77
80 81 6.259608 CAGAGTAGGATATTGAAGTGCAAAGG 59.740 42.308 0.00 0.00 40.48 3.11
81 82 5.440610 AGTAGGATATTGAAGTGCAAAGGG 58.559 41.667 0.00 0.00 40.48 3.95
82 83 3.635591 AGGATATTGAAGTGCAAAGGGG 58.364 45.455 0.00 0.00 40.48 4.79
83 84 3.011708 AGGATATTGAAGTGCAAAGGGGT 59.988 43.478 0.00 0.00 40.48 4.95
84 85 3.381590 GGATATTGAAGTGCAAAGGGGTC 59.618 47.826 0.00 0.00 40.48 4.46
85 86 2.683211 ATTGAAGTGCAAAGGGGTCT 57.317 45.000 0.00 0.00 40.48 3.85
86 87 1.981256 TTGAAGTGCAAAGGGGTCTC 58.019 50.000 0.00 0.00 32.46 3.36
87 88 0.110486 TGAAGTGCAAAGGGGTCTCC 59.890 55.000 0.00 0.00 0.00 3.71
88 89 5.974546 ATTGAAGTGCAAAGGGGTCTCCC 62.975 52.174 0.00 0.00 45.25 4.30
98 99 3.637273 GGTCTCCCCAAGCCACGT 61.637 66.667 0.00 0.00 0.00 4.49
99 100 2.288025 GGTCTCCCCAAGCCACGTA 61.288 63.158 0.00 0.00 0.00 3.57
100 101 1.623542 GGTCTCCCCAAGCCACGTAT 61.624 60.000 0.00 0.00 0.00 3.06
101 102 0.179081 GTCTCCCCAAGCCACGTATC 60.179 60.000 0.00 0.00 0.00 2.24
102 103 1.146263 CTCCCCAAGCCACGTATCC 59.854 63.158 0.00 0.00 0.00 2.59
103 104 1.306654 TCCCCAAGCCACGTATCCT 60.307 57.895 0.00 0.00 0.00 3.24
104 105 1.146263 CCCCAAGCCACGTATCCTC 59.854 63.158 0.00 0.00 0.00 3.71
105 106 1.146263 CCCAAGCCACGTATCCTCC 59.854 63.158 0.00 0.00 0.00 4.30
106 107 1.146263 CCAAGCCACGTATCCTCCC 59.854 63.158 0.00 0.00 0.00 4.30
107 108 1.622607 CCAAGCCACGTATCCTCCCA 61.623 60.000 0.00 0.00 0.00 4.37
108 109 0.179073 CAAGCCACGTATCCTCCCAG 60.179 60.000 0.00 0.00 0.00 4.45
109 110 0.325296 AAGCCACGTATCCTCCCAGA 60.325 55.000 0.00 0.00 0.00 3.86
110 111 0.757188 AGCCACGTATCCTCCCAGAG 60.757 60.000 0.00 0.00 0.00 3.35
111 112 1.742768 CCACGTATCCTCCCAGAGC 59.257 63.158 0.00 0.00 0.00 4.09
112 113 1.742768 CACGTATCCTCCCAGAGCC 59.257 63.158 0.00 0.00 0.00 4.70
113 114 0.757188 CACGTATCCTCCCAGAGCCT 60.757 60.000 0.00 0.00 0.00 4.58
114 115 0.468400 ACGTATCCTCCCAGAGCCTC 60.468 60.000 0.00 0.00 0.00 4.70
115 116 1.519751 CGTATCCTCCCAGAGCCTCG 61.520 65.000 0.00 0.00 0.00 4.63
116 117 0.468400 GTATCCTCCCAGAGCCTCGT 60.468 60.000 0.00 0.00 0.00 4.18
117 118 1.146452 TATCCTCCCAGAGCCTCGTA 58.854 55.000 0.00 0.00 0.00 3.43
118 119 0.485099 ATCCTCCCAGAGCCTCGTAT 59.515 55.000 0.00 0.00 0.00 3.06
119 120 0.261991 TCCTCCCAGAGCCTCGTATT 59.738 55.000 0.00 0.00 0.00 1.89
120 121 1.497716 TCCTCCCAGAGCCTCGTATTA 59.502 52.381 0.00 0.00 0.00 0.98
121 122 1.889829 CCTCCCAGAGCCTCGTATTAG 59.110 57.143 0.00 0.00 0.00 1.73
122 123 1.271102 CTCCCAGAGCCTCGTATTAGC 59.729 57.143 0.00 0.00 0.00 3.09
123 124 1.133450 TCCCAGAGCCTCGTATTAGCT 60.133 52.381 0.00 0.00 40.24 3.32
128 129 3.669251 GAGCCTCGTATTAGCTCCATT 57.331 47.619 0.00 0.00 45.83 3.16
129 130 3.996480 GAGCCTCGTATTAGCTCCATTT 58.004 45.455 0.00 0.00 45.83 2.32
130 131 3.991121 GAGCCTCGTATTAGCTCCATTTC 59.009 47.826 0.00 0.00 45.83 2.17
131 132 3.067833 GCCTCGTATTAGCTCCATTTCC 58.932 50.000 0.00 0.00 0.00 3.13
132 133 3.318017 CCTCGTATTAGCTCCATTTCCG 58.682 50.000 0.00 0.00 0.00 4.30
133 134 3.005472 CCTCGTATTAGCTCCATTTCCGA 59.995 47.826 0.00 0.00 0.00 4.55
134 135 3.973657 TCGTATTAGCTCCATTTCCGAC 58.026 45.455 0.00 0.00 0.00 4.79
135 136 3.635373 TCGTATTAGCTCCATTTCCGACT 59.365 43.478 0.00 0.00 0.00 4.18
136 137 4.823442 TCGTATTAGCTCCATTTCCGACTA 59.177 41.667 0.00 0.00 0.00 2.59
137 138 5.475909 TCGTATTAGCTCCATTTCCGACTAT 59.524 40.000 0.00 0.00 0.00 2.12
138 139 5.573282 CGTATTAGCTCCATTTCCGACTATG 59.427 44.000 0.00 0.00 0.00 2.23
139 140 5.808366 ATTAGCTCCATTTCCGACTATGA 57.192 39.130 0.00 0.00 0.00 2.15
140 141 5.607939 TTAGCTCCATTTCCGACTATGAA 57.392 39.130 0.00 0.00 0.00 2.57
141 142 4.696479 AGCTCCATTTCCGACTATGAAT 57.304 40.909 0.00 0.00 0.00 2.57
142 143 4.636249 AGCTCCATTTCCGACTATGAATC 58.364 43.478 0.00 0.00 0.00 2.52
143 144 4.346418 AGCTCCATTTCCGACTATGAATCT 59.654 41.667 0.00 0.00 0.00 2.40
144 145 5.059833 GCTCCATTTCCGACTATGAATCTT 58.940 41.667 0.00 0.00 0.00 2.40
145 146 5.049818 GCTCCATTTCCGACTATGAATCTTG 60.050 44.000 0.00 0.00 0.00 3.02
146 147 5.989477 TCCATTTCCGACTATGAATCTTGT 58.011 37.500 0.00 0.00 0.00 3.16
147 148 6.049149 TCCATTTCCGACTATGAATCTTGTC 58.951 40.000 0.00 0.00 0.00 3.18
148 149 6.051717 CCATTTCCGACTATGAATCTTGTCT 58.948 40.000 0.00 0.00 0.00 3.41
149 150 6.540189 CCATTTCCGACTATGAATCTTGTCTT 59.460 38.462 0.00 0.00 0.00 3.01
150 151 6.968131 TTTCCGACTATGAATCTTGTCTTG 57.032 37.500 0.00 0.00 0.00 3.02
151 152 5.011090 TCCGACTATGAATCTTGTCTTGG 57.989 43.478 0.00 0.00 0.00 3.61
152 153 4.466370 TCCGACTATGAATCTTGTCTTGGT 59.534 41.667 0.00 0.00 0.00 3.67
153 154 5.046591 TCCGACTATGAATCTTGTCTTGGTT 60.047 40.000 0.00 0.00 0.00 3.67
154 155 5.292101 CCGACTATGAATCTTGTCTTGGTTC 59.708 44.000 0.00 0.00 0.00 3.62
155 156 5.869344 CGACTATGAATCTTGTCTTGGTTCA 59.131 40.000 0.00 0.00 33.82 3.18
156 157 6.536582 CGACTATGAATCTTGTCTTGGTTCAT 59.463 38.462 7.29 7.29 41.10 2.57
157 158 7.065085 CGACTATGAATCTTGTCTTGGTTCATT 59.935 37.037 7.41 0.00 39.47 2.57
158 159 8.273780 ACTATGAATCTTGTCTTGGTTCATTC 57.726 34.615 7.41 0.00 39.47 2.67
159 160 5.611796 TGAATCTTGTCTTGGTTCATTCG 57.388 39.130 0.00 0.00 0.00 3.34
160 161 5.304778 TGAATCTTGTCTTGGTTCATTCGA 58.695 37.500 0.00 0.00 0.00 3.71
161 162 5.179368 TGAATCTTGTCTTGGTTCATTCGAC 59.821 40.000 0.00 0.00 0.00 4.20
162 163 3.057019 TCTTGTCTTGGTTCATTCGACG 58.943 45.455 0.00 0.00 0.00 5.12
163 164 2.519377 TGTCTTGGTTCATTCGACGT 57.481 45.000 0.00 0.00 0.00 4.34
164 165 2.131972 TGTCTTGGTTCATTCGACGTG 58.868 47.619 0.00 0.00 0.00 4.49
165 166 2.223852 TGTCTTGGTTCATTCGACGTGA 60.224 45.455 0.00 0.00 0.00 4.35
166 167 2.408704 GTCTTGGTTCATTCGACGTGAG 59.591 50.000 0.00 0.00 0.00 3.51
167 168 2.295070 TCTTGGTTCATTCGACGTGAGA 59.705 45.455 0.00 0.00 0.00 3.27
168 169 2.347697 TGGTTCATTCGACGTGAGAG 57.652 50.000 0.00 0.00 0.00 3.20
169 170 1.883926 TGGTTCATTCGACGTGAGAGA 59.116 47.619 0.00 0.00 0.00 3.10
170 171 2.492088 TGGTTCATTCGACGTGAGAGAT 59.508 45.455 0.00 0.00 0.00 2.75
171 172 2.854777 GGTTCATTCGACGTGAGAGATG 59.145 50.000 0.00 0.22 0.00 2.90
172 173 2.851805 TCATTCGACGTGAGAGATGG 57.148 50.000 0.00 0.00 0.00 3.51
173 174 1.405463 TCATTCGACGTGAGAGATGGG 59.595 52.381 0.00 0.00 0.00 4.00
202 203 1.202510 TGTTTGACAAGGTTGCATGCC 60.203 47.619 16.68 0.00 0.00 4.40
214 215 2.503061 CATGCCCTCCGTCTCAGG 59.497 66.667 0.00 0.00 0.00 3.86
221 222 2.675423 TCCGTCTCAGGTGGTCCG 60.675 66.667 0.00 0.00 39.05 4.79
230 232 2.358247 GGTGGTCCGCATGTTCGT 60.358 61.111 4.48 0.00 0.00 3.85
254 256 1.350351 AGAGATGCTGTTGTGGAAGCT 59.650 47.619 0.00 0.00 40.21 3.74
283 298 1.874562 CCGTCTCGGGGTATCGATC 59.125 63.158 0.00 0.00 44.15 3.69
284 299 1.584380 CCGTCTCGGGGTATCGATCC 61.584 65.000 0.00 3.07 44.15 3.36
301 321 3.118592 CGATCCCTTTTTACAGCTCCTCT 60.119 47.826 0.00 0.00 0.00 3.69
302 322 3.983044 TCCCTTTTTACAGCTCCTCTC 57.017 47.619 0.00 0.00 0.00 3.20
324 344 6.316140 TCTCATCGATTGTATTTCAAACCCTG 59.684 38.462 0.00 0.00 39.62 4.45
328 352 6.001460 TCGATTGTATTTCAAACCCTGTCTT 58.999 36.000 0.00 0.00 39.62 3.01
339 363 5.654650 TCAAACCCTGTCTTGTTAACACAAT 59.345 36.000 8.07 0.00 42.21 2.71
346 370 4.034626 TGTCTTGTTAACACAATGACACGG 59.965 41.667 19.80 1.51 42.21 4.94
395 419 7.451731 TCTATTAGGGTGAATTGGTGAGATT 57.548 36.000 0.00 0.00 0.00 2.40
420 444 2.364647 ACTTTCTATAGCCGCCAGTACC 59.635 50.000 0.00 0.00 0.00 3.34
426 454 5.512298 TCTATAGCCGCCAGTACCATATAA 58.488 41.667 0.00 0.00 0.00 0.98
427 455 6.134055 TCTATAGCCGCCAGTACCATATAAT 58.866 40.000 0.00 0.00 0.00 1.28
430 458 5.693769 AGCCGCCAGTACCATATAATTAT 57.306 39.130 2.97 2.97 0.00 1.28
432 460 7.190335 AGCCGCCAGTACCATATAATTATTA 57.810 36.000 2.68 0.00 0.00 0.98
511 549 3.640967 TGGCCAATTATTTATCTGGGTGC 59.359 43.478 0.61 0.00 0.00 5.01
512 550 3.897505 GGCCAATTATTTATCTGGGTGCT 59.102 43.478 0.00 0.00 0.00 4.40
513 551 4.262164 GGCCAATTATTTATCTGGGTGCTG 60.262 45.833 0.00 0.00 0.00 4.41
514 552 4.584325 GCCAATTATTTATCTGGGTGCTGA 59.416 41.667 0.00 0.00 0.00 4.26
515 553 5.278660 GCCAATTATTTATCTGGGTGCTGAG 60.279 44.000 0.00 0.00 0.00 3.35
516 554 6.064060 CCAATTATTTATCTGGGTGCTGAGA 58.936 40.000 0.00 0.00 0.00 3.27
517 555 6.206243 CCAATTATTTATCTGGGTGCTGAGAG 59.794 42.308 0.00 0.00 0.00 3.20
518 556 2.698855 TTTATCTGGGTGCTGAGAGC 57.301 50.000 0.00 0.00 42.82 4.09
519 557 1.871418 TTATCTGGGTGCTGAGAGCT 58.129 50.000 0.00 0.00 42.97 4.09
520 558 1.117994 TATCTGGGTGCTGAGAGCTG 58.882 55.000 0.00 0.00 42.97 4.24
521 559 2.254737 ATCTGGGTGCTGAGAGCTGC 62.255 60.000 0.00 0.00 42.97 5.25
522 560 3.243816 TGGGTGCTGAGAGCTGCA 61.244 61.111 1.02 0.00 45.14 4.41
577 615 6.822676 TGAACAGCCAAAATGTGAAAAGAAAT 59.177 30.769 0.00 0.00 0.00 2.17
578 616 7.984050 TGAACAGCCAAAATGTGAAAAGAAATA 59.016 29.630 0.00 0.00 0.00 1.40
579 617 7.713764 ACAGCCAAAATGTGAAAAGAAATAC 57.286 32.000 0.00 0.00 0.00 1.89
624 668 0.253610 TCCCAACACGTCCACTTGTT 59.746 50.000 0.00 0.00 38.62 2.83
735 3056 2.357009 GTGTTCCATCAGGCAGCTAATG 59.643 50.000 0.00 0.00 33.74 1.90
814 3135 0.994995 CGAGTTGCTTCTCCATCGTG 59.005 55.000 3.84 0.00 0.00 4.35
871 3194 1.522355 CGTGGCTGGCTAGGTGATG 60.522 63.158 0.00 0.00 0.00 3.07
902 3225 0.861837 CTGGTCGTGTCAACAAGCTC 59.138 55.000 0.00 0.00 0.00 4.09
903 3226 0.531974 TGGTCGTGTCAACAAGCTCC 60.532 55.000 0.00 0.00 0.00 4.70
904 3227 1.557443 GGTCGTGTCAACAAGCTCCG 61.557 60.000 0.00 0.00 0.00 4.63
905 3228 1.300620 TCGTGTCAACAAGCTCCGG 60.301 57.895 0.00 0.00 0.00 5.14
944 3268 3.547746 CTCACCACCTACCTCTCTCTAC 58.452 54.545 0.00 0.00 0.00 2.59
986 3310 1.417372 GATGAGCGCAGATAGAGCAC 58.583 55.000 11.47 0.00 46.42 4.40
990 3314 0.463204 AGCGCAGATAGAGCACACAT 59.537 50.000 11.47 0.00 46.42 3.21
991 3315 1.134580 AGCGCAGATAGAGCACACATT 60.135 47.619 11.47 0.00 46.42 2.71
1000 3324 5.474532 AGATAGAGCACACATTCAAGCAAAA 59.525 36.000 0.00 0.00 0.00 2.44
1035 3359 3.624777 GTTGTTCATGATCCTCCATGGT 58.375 45.455 12.58 0.00 43.01 3.55
1085 3409 0.780002 GCGCATGCTCAACAAACAAG 59.220 50.000 17.13 0.00 38.39 3.16
1088 3412 2.397549 GCATGCTCAACAAACAAGGAC 58.602 47.619 11.37 0.00 0.00 3.85
1125 3449 2.789092 CGGTGAGCATGCTCGAATTTTC 60.789 50.000 35.68 20.82 45.48 2.29
1128 3452 1.066152 GAGCATGCTCGAATTTTCCCC 59.934 52.381 30.64 5.40 33.06 4.81
1373 3716 3.182887 AGCTTGGGAGAAAGAGAGAGA 57.817 47.619 0.00 0.00 0.00 3.10
1423 3770 6.403309 CCGGCTAGTTTACAGAATTTTCCTTC 60.403 42.308 0.00 0.00 0.00 3.46
1438 3785 0.110644 CCTTCGACGCTTCACTTTGC 60.111 55.000 0.00 0.00 0.00 3.68
1440 3787 1.195448 CTTCGACGCTTCACTTTGCAT 59.805 47.619 0.00 0.00 0.00 3.96
1505 3852 0.250989 CCACGTGGCTTCCCCTAAAA 60.251 55.000 24.02 0.00 0.00 1.52
1524 3871 1.170442 AAAAGGAATTACCACGCGGG 58.830 50.000 12.47 6.05 42.04 6.13
1578 3925 2.601266 CGCGTTTTGAATCCGACTGTTT 60.601 45.455 0.00 0.00 0.00 2.83
1608 3959 5.492895 TGTCCGCTCCATGTTTCTAAAATA 58.507 37.500 0.00 0.00 0.00 1.40
1678 4085 2.096496 CAGAATCAGAAACCATGTCCGC 59.904 50.000 0.00 0.00 0.00 5.54
1688 4095 0.670546 CCATGTCCGCTTTCACTCGT 60.671 55.000 0.00 0.00 0.00 4.18
1716 4123 7.956328 TTCTTTTCCTGTAGTCTAGATGCTA 57.044 36.000 0.00 0.00 0.00 3.49
1745 4157 1.300233 GTGAGATCGCCATCGGACC 60.300 63.158 0.00 0.00 33.75 4.46
1753 4165 4.147449 CCATCGGACCGCTGAGCA 62.147 66.667 19.00 0.00 31.75 4.26
1796 4208 8.895737 TCTTAACCGTTATTTTCTGTTTGTCTT 58.104 29.630 0.00 0.00 0.00 3.01
2012 4443 1.662686 AAGTGCTCTTCTTAGGCCCT 58.337 50.000 0.00 0.00 0.00 5.19
2113 4544 7.291411 AGATCGATAAGGTGTTAGCTAATGT 57.709 36.000 9.88 0.00 0.00 2.71
2124 4561 1.019673 AGCTAATGTGATGCTTGCGG 58.980 50.000 0.00 0.00 32.61 5.69
2404 5598 0.036388 TTCATCGGGGAGTTGACTGC 60.036 55.000 0.00 0.00 0.00 4.40
2413 5607 3.526534 GGGAGTTGACTGCTATGAAGTC 58.473 50.000 2.69 0.00 43.62 3.01
2427 5623 5.996513 GCTATGAAGTCCATGTGAGATTCAT 59.003 40.000 18.29 18.29 40.79 2.57
2429 5625 7.117523 GCTATGAAGTCCATGTGAGATTCATAC 59.882 40.741 17.13 13.56 39.52 2.39
2485 5682 8.356657 TGAATACATTTATTTCCCCGCAATTAG 58.643 33.333 0.00 0.00 0.00 1.73
2687 6334 3.538591 TGCTGATAGCCTTCATGACTTG 58.461 45.455 0.00 0.00 41.51 3.16
2688 6335 2.290093 GCTGATAGCCTTCATGACTTGC 59.710 50.000 0.00 0.00 34.48 4.01
2721 6558 5.484715 AGTTCGCATGCCTAACTAAAACTA 58.515 37.500 24.30 0.00 31.84 2.24
2774 6613 3.906720 ATTTTAGTGGCTCGCTTCCTA 57.093 42.857 0.00 0.00 0.00 2.94
2854 6956 6.408662 GGGAACTCTATATTCTTCTGCCAAGT 60.409 42.308 0.00 0.00 0.00 3.16
2972 7077 2.821969 GTCCACTGCCATCATCACTTTT 59.178 45.455 0.00 0.00 0.00 2.27
3015 7121 2.163818 TGTATGCCTATAGTTGCCGC 57.836 50.000 0.00 0.00 0.00 6.53
3016 7122 1.068474 GTATGCCTATAGTTGCCGCG 58.932 55.000 0.00 0.00 0.00 6.46
3037 7143 8.597227 GCCGCGTGTTGTTGATATATTATAATA 58.403 33.333 4.92 7.62 0.00 0.98
3088 7197 2.939103 CCTCTCTTTGTTTAGATGGGCG 59.061 50.000 0.00 0.00 0.00 6.13
3103 7212 4.999950 AGATGGGCGTCAGATAATGATTTC 59.000 41.667 0.00 0.00 40.92 2.17
3110 7219 5.359756 CGTCAGATAATGATTTCACTGGGA 58.640 41.667 0.00 0.00 40.92 4.37
3321 7447 8.807581 AGCTTTATTTTGCGCTAAACATAAATC 58.192 29.630 18.90 14.77 30.33 2.17
3700 8179 0.817634 CCCATTGCCGGCGATAAGAA 60.818 55.000 28.81 13.21 0.00 2.52
3788 8268 8.223769 GTGCAGACGAATTGGTGATATATTAAG 58.776 37.037 0.00 0.00 0.00 1.85
3956 8463 8.256356 ACTGTAGGATATCTGATAAGCTTGTT 57.744 34.615 9.86 0.00 0.00 2.83
3980 8487 8.902735 GTTTCAATAGACTTTTCGAAATTCACC 58.097 33.333 12.12 0.30 0.00 4.02
4501 9039 7.542130 GGGCTAAAGATTCACAATTGTAAGTTG 59.458 37.037 11.53 0.00 0.00 3.16
4565 9104 2.978156 AGAAAGGGCAGGTTTCATCA 57.022 45.000 8.39 0.00 36.53 3.07
4990 10141 7.713750 TCGTATTTTGGGTTTAAAATGTCACA 58.286 30.769 6.70 0.00 39.74 3.58
5204 10385 3.403322 TGGAAAATCCATAGTAGGCCCT 58.597 45.455 0.00 0.00 42.67 5.19
5941 11243 4.891627 TCTTCTGCATCGTGAACAAAAA 57.108 36.364 0.00 0.00 0.00 1.94
5947 11251 2.857152 GCATCGTGAACAAAAAGCAACA 59.143 40.909 0.00 0.00 0.00 3.33
6077 11398 7.360438 GGAAGACAAAACTGTAGATGTCATCAC 60.360 40.741 15.20 10.97 43.53 3.06
6087 11408 4.511617 AGATGTCATCACGATTCGCTAT 57.488 40.909 15.20 0.00 0.00 2.97
6088 11409 5.629079 AGATGTCATCACGATTCGCTATA 57.371 39.130 15.20 0.00 0.00 1.31
6117 11453 8.441312 TTCAAAATGTTTTAGTCTCTAACGGT 57.559 30.769 0.00 0.00 0.00 4.83
6269 11637 9.983804 GGTAGTTATCACTTTAAAAGTACATGC 57.016 33.333 0.00 0.00 40.46 4.06
6311 11679 9.346725 GGTGACATTTTTCAAGATCATAACTTC 57.653 33.333 0.00 0.00 0.00 3.01
6317 11685 7.687941 TTTTCAAGATCATAACTTCTCACCC 57.312 36.000 0.00 0.00 0.00 4.61
6373 11741 8.947115 AGATTGTTACCAGCTTCAAATACTAAC 58.053 33.333 0.00 0.00 0.00 2.34
6445 11813 4.398044 CCAAGATACAACATGTGGGTTACC 59.602 45.833 4.95 0.00 37.24 2.85
6625 11995 7.809806 CCTTTCATTGAACCTGACTTGAAATAC 59.190 37.037 0.00 0.00 33.91 1.89
6626 11996 8.463930 TTTCATTGAACCTGACTTGAAATACT 57.536 30.769 0.00 0.00 30.52 2.12
6627 11997 7.439157 TCATTGAACCTGACTTGAAATACTG 57.561 36.000 0.00 0.00 0.00 2.74
6628 11998 7.223584 TCATTGAACCTGACTTGAAATACTGA 58.776 34.615 0.00 0.00 0.00 3.41
6629 11999 6.861065 TTGAACCTGACTTGAAATACTGAC 57.139 37.500 0.00 0.00 0.00 3.51
6630 12000 6.174720 TGAACCTGACTTGAAATACTGACT 57.825 37.500 0.00 0.00 0.00 3.41
6631 12001 7.297936 TGAACCTGACTTGAAATACTGACTA 57.702 36.000 0.00 0.00 0.00 2.59
6633 12003 7.819415 TGAACCTGACTTGAAATACTGACTATG 59.181 37.037 0.00 0.00 0.00 2.23
6634 12004 7.482169 ACCTGACTTGAAATACTGACTATGA 57.518 36.000 0.00 0.00 0.00 2.15
6635 12005 7.324178 ACCTGACTTGAAATACTGACTATGAC 58.676 38.462 0.00 0.00 0.00 3.06
6636 12006 7.039011 ACCTGACTTGAAATACTGACTATGACA 60.039 37.037 0.00 0.00 0.00 3.58
6638 12008 8.932945 TGACTTGAAATACTGACTATGACATC 57.067 34.615 0.00 0.00 0.00 3.06
6639 12009 8.531146 TGACTTGAAATACTGACTATGACATCA 58.469 33.333 0.00 0.00 0.00 3.07
6726 12107 6.935208 AGAAAGGTAGTAAAACAGGTGTGATC 59.065 38.462 0.00 0.00 0.00 2.92
6813 12200 5.380900 AGGCAGAAAAAGAGAAAACTAGCT 58.619 37.500 0.00 0.00 0.00 3.32
6863 12256 7.228706 CACTAGGACCACATTTTGTTCTAACTT 59.771 37.037 0.00 0.00 0.00 2.66
6920 12315 3.683365 TTGTGATGTCTTGCAGAGCTA 57.317 42.857 0.00 0.00 0.00 3.32
7487 12964 7.360861 CGACAGTTAAATATCTGCAACTTTGGA 60.361 37.037 0.00 0.00 35.37 3.53
7742 13225 1.051008 AGGAGACACATGTGAGCACA 58.949 50.000 31.94 5.70 46.44 4.57
7795 13279 8.788325 TTCTATCCTGCTAACTTTTAGGTTTC 57.212 34.615 0.00 0.00 0.00 2.78
8015 13503 2.334977 TGGGTAAGCTCACTGAGGAAA 58.665 47.619 8.17 0.00 0.00 3.13
8156 13646 4.082081 CACAGTTTGGGCATATGTGAATGT 60.082 41.667 4.29 0.00 43.02 2.71
8579 14069 0.596083 GATCGATCGGTCCACAGCTG 60.596 60.000 17.77 13.48 0.00 4.24
8636 14126 0.976641 TTGGTGCCTCTACAGTCAGG 59.023 55.000 0.00 0.00 0.00 3.86
8657 14147 4.938226 AGGATCTTTGCTTAAGAGGTTTCG 59.062 41.667 6.67 0.00 45.69 3.46
8671 14161 4.578928 AGAGGTTTCGTACTTGCATTGTTT 59.421 37.500 0.00 0.00 0.00 2.83
8672 14162 5.761234 AGAGGTTTCGTACTTGCATTGTTTA 59.239 36.000 0.00 0.00 0.00 2.01
8673 14163 5.997385 AGGTTTCGTACTTGCATTGTTTAG 58.003 37.500 0.00 0.00 0.00 1.85
8762 14258 2.324330 CGCGATGCCACTTCACCAA 61.324 57.895 0.00 0.00 0.00 3.67
8822 14320 9.630310 CGTTCGAATTCAAAATTCAAAATCAAA 57.370 25.926 0.00 0.00 0.00 2.69
8902 14400 9.799106 AGAAATCATAAGTAATATTGGTGGAGG 57.201 33.333 0.00 0.00 0.00 4.30
8923 14422 5.970592 AGGAAGCATCTTTTCATAAAAGGC 58.029 37.500 11.17 8.23 46.11 4.35
9420 14933 1.225475 CATGTTCTTCACGCGCGAC 60.225 57.895 39.36 23.28 0.00 5.19
9423 14936 0.728129 TGTTCTTCACGCGCGACTAG 60.728 55.000 39.36 26.78 0.00 2.57
9506 15019 0.811915 CAGGAGAATCGTCACGGACT 59.188 55.000 0.00 0.00 34.37 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.003897 TGCAACCGTTTTACAATCCACTC 59.996 43.478 0.00 0.00 0.00 3.51
1 2 2.952978 TGCAACCGTTTTACAATCCACT 59.047 40.909 0.00 0.00 0.00 4.00
8 9 2.287373 CCTACGTTGCAACCGTTTTACA 59.713 45.455 23.42 8.46 39.60 2.41
9 10 2.907393 CCTACGTTGCAACCGTTTTAC 58.093 47.619 23.42 0.00 39.60 2.01
10 11 1.263752 GCCTACGTTGCAACCGTTTTA 59.736 47.619 23.42 9.09 39.60 1.52
11 12 0.029700 GCCTACGTTGCAACCGTTTT 59.970 50.000 23.42 5.85 39.60 2.43
12 13 0.816421 AGCCTACGTTGCAACCGTTT 60.816 50.000 23.42 8.27 39.60 3.60
13 14 0.816421 AAGCCTACGTTGCAACCGTT 60.816 50.000 23.42 10.72 39.60 4.44
14 15 1.226030 GAAGCCTACGTTGCAACCGT 61.226 55.000 23.42 23.46 42.06 4.83
15 16 0.949105 AGAAGCCTACGTTGCAACCG 60.949 55.000 23.42 19.41 0.00 4.44
16 17 0.796927 GAGAAGCCTACGTTGCAACC 59.203 55.000 23.42 9.22 0.00 3.77
17 18 1.797025 AGAGAAGCCTACGTTGCAAC 58.203 50.000 19.89 19.89 0.00 4.17
18 19 2.955614 GTAGAGAAGCCTACGTTGCAA 58.044 47.619 11.66 0.00 30.96 4.08
19 20 2.649331 GTAGAGAAGCCTACGTTGCA 57.351 50.000 11.66 0.00 30.96 4.08
25 26 4.170292 TGTTCAACGTAGAGAAGCCTAC 57.830 45.455 0.00 0.00 36.54 3.18
26 27 4.859304 TTGTTCAACGTAGAGAAGCCTA 57.141 40.909 0.00 0.00 0.00 3.93
27 28 3.746045 TTGTTCAACGTAGAGAAGCCT 57.254 42.857 0.00 0.00 0.00 4.58
28 29 3.746492 ACATTGTTCAACGTAGAGAAGCC 59.254 43.478 0.00 0.00 0.00 4.35
29 30 4.992381 ACATTGTTCAACGTAGAGAAGC 57.008 40.909 0.00 0.00 0.00 3.86
30 31 6.287107 ACAACATTGTTCAACGTAGAGAAG 57.713 37.500 0.00 0.00 38.47 2.85
31 32 6.757478 TGTACAACATTGTTCAACGTAGAGAA 59.243 34.615 1.98 0.00 42.35 2.87
32 33 6.274579 TGTACAACATTGTTCAACGTAGAGA 58.725 36.000 1.98 0.00 42.35 3.10
33 34 6.419710 TCTGTACAACATTGTTCAACGTAGAG 59.580 38.462 1.98 12.19 42.35 2.43
34 35 6.274579 TCTGTACAACATTGTTCAACGTAGA 58.725 36.000 1.98 0.00 42.35 2.59
35 36 6.200286 ACTCTGTACAACATTGTTCAACGTAG 59.800 38.462 1.98 5.26 42.35 3.51
36 37 6.044046 ACTCTGTACAACATTGTTCAACGTA 58.956 36.000 1.98 0.00 42.35 3.57
37 38 4.873827 ACTCTGTACAACATTGTTCAACGT 59.126 37.500 1.98 0.00 42.35 3.99
38 39 5.403897 ACTCTGTACAACATTGTTCAACG 57.596 39.130 1.98 1.31 42.35 4.10
39 40 6.704493 TCCTACTCTGTACAACATTGTTCAAC 59.296 38.462 1.98 1.81 42.35 3.18
40 41 6.822442 TCCTACTCTGTACAACATTGTTCAA 58.178 36.000 1.98 0.00 42.35 2.69
41 42 6.413783 TCCTACTCTGTACAACATTGTTCA 57.586 37.500 1.98 3.33 42.35 3.18
42 43 9.601217 AATATCCTACTCTGTACAACATTGTTC 57.399 33.333 1.98 0.00 42.35 3.18
43 44 9.383519 CAATATCCTACTCTGTACAACATTGTT 57.616 33.333 1.98 0.00 42.35 2.83
44 45 8.758829 TCAATATCCTACTCTGTACAACATTGT 58.241 33.333 2.32 2.32 44.86 2.71
45 46 9.599866 TTCAATATCCTACTCTGTACAACATTG 57.400 33.333 0.00 0.00 0.00 2.82
46 47 9.823647 CTTCAATATCCTACTCTGTACAACATT 57.176 33.333 0.00 0.00 0.00 2.71
47 48 8.982723 ACTTCAATATCCTACTCTGTACAACAT 58.017 33.333 0.00 0.00 0.00 2.71
48 49 8.251026 CACTTCAATATCCTACTCTGTACAACA 58.749 37.037 0.00 0.00 0.00 3.33
49 50 7.222999 GCACTTCAATATCCTACTCTGTACAAC 59.777 40.741 0.00 0.00 0.00 3.32
50 51 7.093509 TGCACTTCAATATCCTACTCTGTACAA 60.094 37.037 0.00 0.00 0.00 2.41
51 52 6.379988 TGCACTTCAATATCCTACTCTGTACA 59.620 38.462 0.00 0.00 0.00 2.90
52 53 6.806751 TGCACTTCAATATCCTACTCTGTAC 58.193 40.000 0.00 0.00 0.00 2.90
53 54 7.418337 TTGCACTTCAATATCCTACTCTGTA 57.582 36.000 0.00 0.00 0.00 2.74
54 55 5.939764 TGCACTTCAATATCCTACTCTGT 57.060 39.130 0.00 0.00 0.00 3.41
55 56 6.259608 CCTTTGCACTTCAATATCCTACTCTG 59.740 42.308 0.00 0.00 34.12 3.35
56 57 6.352516 CCTTTGCACTTCAATATCCTACTCT 58.647 40.000 0.00 0.00 34.12 3.24
57 58 5.529060 CCCTTTGCACTTCAATATCCTACTC 59.471 44.000 0.00 0.00 34.12 2.59
58 59 5.440610 CCCTTTGCACTTCAATATCCTACT 58.559 41.667 0.00 0.00 34.12 2.57
59 60 4.580580 CCCCTTTGCACTTCAATATCCTAC 59.419 45.833 0.00 0.00 34.12 3.18
60 61 4.229582 ACCCCTTTGCACTTCAATATCCTA 59.770 41.667 0.00 0.00 34.12 2.94
61 62 3.011708 ACCCCTTTGCACTTCAATATCCT 59.988 43.478 0.00 0.00 34.12 3.24
62 63 3.365472 ACCCCTTTGCACTTCAATATCC 58.635 45.455 0.00 0.00 34.12 2.59
63 64 4.273318 AGACCCCTTTGCACTTCAATATC 58.727 43.478 0.00 0.00 34.12 1.63
64 65 4.273318 GAGACCCCTTTGCACTTCAATAT 58.727 43.478 0.00 0.00 34.12 1.28
65 66 3.561313 GGAGACCCCTTTGCACTTCAATA 60.561 47.826 0.00 0.00 34.12 1.90
66 67 2.519013 GAGACCCCTTTGCACTTCAAT 58.481 47.619 0.00 0.00 34.12 2.57
67 68 1.478654 GGAGACCCCTTTGCACTTCAA 60.479 52.381 0.00 0.00 0.00 2.69
68 69 0.110486 GGAGACCCCTTTGCACTTCA 59.890 55.000 0.00 0.00 0.00 3.02
69 70 2.948386 GGAGACCCCTTTGCACTTC 58.052 57.895 0.00 0.00 0.00 3.01
82 83 0.179081 GATACGTGGCTTGGGGAGAC 60.179 60.000 0.00 0.00 0.00 3.36
83 84 1.335132 GGATACGTGGCTTGGGGAGA 61.335 60.000 0.00 0.00 0.00 3.71
84 85 1.146263 GGATACGTGGCTTGGGGAG 59.854 63.158 0.00 0.00 0.00 4.30
85 86 1.306654 AGGATACGTGGCTTGGGGA 60.307 57.895 0.00 0.00 46.39 4.81
86 87 1.146263 GAGGATACGTGGCTTGGGG 59.854 63.158 0.00 0.00 46.39 4.96
87 88 1.146263 GGAGGATACGTGGCTTGGG 59.854 63.158 0.00 0.00 46.39 4.12
88 89 1.146263 GGGAGGATACGTGGCTTGG 59.854 63.158 0.00 0.00 46.39 3.61
89 90 0.179073 CTGGGAGGATACGTGGCTTG 60.179 60.000 0.00 0.00 46.39 4.01
90 91 0.325296 TCTGGGAGGATACGTGGCTT 60.325 55.000 0.00 0.00 46.39 4.35
91 92 0.757188 CTCTGGGAGGATACGTGGCT 60.757 60.000 0.00 0.00 46.39 4.75
92 93 1.742768 CTCTGGGAGGATACGTGGC 59.257 63.158 0.00 0.00 46.39 5.01
93 94 1.742768 GCTCTGGGAGGATACGTGG 59.257 63.158 0.00 0.00 46.39 4.94
94 95 0.757188 AGGCTCTGGGAGGATACGTG 60.757 60.000 0.00 0.00 46.39 4.49
95 96 0.468400 GAGGCTCTGGGAGGATACGT 60.468 60.000 7.40 0.00 46.39 3.57
96 97 1.519751 CGAGGCTCTGGGAGGATACG 61.520 65.000 13.50 0.00 46.39 3.06
97 98 0.468400 ACGAGGCTCTGGGAGGATAC 60.468 60.000 13.50 0.00 0.00 2.24
98 99 1.146452 TACGAGGCTCTGGGAGGATA 58.854 55.000 13.50 0.00 0.00 2.59
99 100 0.485099 ATACGAGGCTCTGGGAGGAT 59.515 55.000 13.50 0.00 0.00 3.24
100 101 0.261991 AATACGAGGCTCTGGGAGGA 59.738 55.000 13.50 0.00 0.00 3.71
101 102 1.889829 CTAATACGAGGCTCTGGGAGG 59.110 57.143 13.50 0.00 0.00 4.30
102 103 1.271102 GCTAATACGAGGCTCTGGGAG 59.729 57.143 13.50 4.63 0.00 4.30
103 104 1.133450 AGCTAATACGAGGCTCTGGGA 60.133 52.381 13.50 0.00 0.00 4.37
104 105 1.271102 GAGCTAATACGAGGCTCTGGG 59.729 57.143 13.50 0.00 46.04 4.45
105 106 2.715737 GAGCTAATACGAGGCTCTGG 57.284 55.000 13.50 0.00 46.04 3.86
109 110 3.244249 GGAAATGGAGCTAATACGAGGCT 60.244 47.826 0.00 0.00 39.16 4.58
110 111 3.067833 GGAAATGGAGCTAATACGAGGC 58.932 50.000 0.00 0.00 0.00 4.70
111 112 3.005472 TCGGAAATGGAGCTAATACGAGG 59.995 47.826 0.00 0.00 0.00 4.63
112 113 3.982058 GTCGGAAATGGAGCTAATACGAG 59.018 47.826 0.00 0.00 0.00 4.18
113 114 3.635373 AGTCGGAAATGGAGCTAATACGA 59.365 43.478 0.00 0.00 0.00 3.43
114 115 3.978687 AGTCGGAAATGGAGCTAATACG 58.021 45.455 0.00 0.00 0.00 3.06
115 116 6.688578 TCATAGTCGGAAATGGAGCTAATAC 58.311 40.000 0.00 0.00 0.00 1.89
116 117 6.911250 TCATAGTCGGAAATGGAGCTAATA 57.089 37.500 0.00 0.00 0.00 0.98
117 118 5.808366 TCATAGTCGGAAATGGAGCTAAT 57.192 39.130 0.00 0.00 0.00 1.73
118 119 5.607939 TTCATAGTCGGAAATGGAGCTAA 57.392 39.130 0.00 0.00 0.00 3.09
119 120 5.540337 AGATTCATAGTCGGAAATGGAGCTA 59.460 40.000 0.15 0.00 25.51 3.32
120 121 4.346418 AGATTCATAGTCGGAAATGGAGCT 59.654 41.667 0.00 0.00 0.00 4.09
121 122 4.636249 AGATTCATAGTCGGAAATGGAGC 58.364 43.478 2.75 0.00 0.00 4.70
122 123 6.051717 ACAAGATTCATAGTCGGAAATGGAG 58.948 40.000 2.75 0.00 0.00 3.86
123 124 5.989477 ACAAGATTCATAGTCGGAAATGGA 58.011 37.500 2.75 0.00 0.00 3.41
124 125 6.051717 AGACAAGATTCATAGTCGGAAATGG 58.948 40.000 2.75 0.00 36.18 3.16
125 126 7.404985 CAAGACAAGATTCATAGTCGGAAATG 58.595 38.462 0.00 0.00 36.18 2.32
126 127 6.540189 CCAAGACAAGATTCATAGTCGGAAAT 59.460 38.462 0.00 0.00 36.18 2.17
127 128 5.874810 CCAAGACAAGATTCATAGTCGGAAA 59.125 40.000 0.00 0.00 36.18 3.13
128 129 5.046591 ACCAAGACAAGATTCATAGTCGGAA 60.047 40.000 0.00 0.00 36.18 4.30
129 130 4.466370 ACCAAGACAAGATTCATAGTCGGA 59.534 41.667 0.00 0.00 36.18 4.55
130 131 4.759782 ACCAAGACAAGATTCATAGTCGG 58.240 43.478 0.00 0.00 36.18 4.79
131 132 5.869344 TGAACCAAGACAAGATTCATAGTCG 59.131 40.000 0.00 0.00 36.18 4.18
132 133 7.856145 ATGAACCAAGACAAGATTCATAGTC 57.144 36.000 0.00 0.00 38.04 2.59
133 134 7.065085 CGAATGAACCAAGACAAGATTCATAGT 59.935 37.037 0.00 0.00 38.69 2.12
134 135 7.278646 TCGAATGAACCAAGACAAGATTCATAG 59.721 37.037 0.00 0.00 38.69 2.23
135 136 7.064609 GTCGAATGAACCAAGACAAGATTCATA 59.935 37.037 0.00 0.00 38.69 2.15
136 137 5.939883 TCGAATGAACCAAGACAAGATTCAT 59.060 36.000 0.00 0.00 40.77 2.57
137 138 5.179368 GTCGAATGAACCAAGACAAGATTCA 59.821 40.000 0.00 0.00 34.03 2.57
138 139 5.622378 GTCGAATGAACCAAGACAAGATTC 58.378 41.667 0.00 0.00 32.57 2.52
139 140 4.152402 CGTCGAATGAACCAAGACAAGATT 59.848 41.667 0.00 0.00 32.57 2.40
140 141 3.679980 CGTCGAATGAACCAAGACAAGAT 59.320 43.478 0.00 0.00 32.57 2.40
141 142 3.057019 CGTCGAATGAACCAAGACAAGA 58.943 45.455 0.00 0.00 32.57 3.02
142 143 2.800544 ACGTCGAATGAACCAAGACAAG 59.199 45.455 0.00 0.00 32.57 3.16
143 144 2.542178 CACGTCGAATGAACCAAGACAA 59.458 45.455 0.00 0.00 32.57 3.18
144 145 2.131972 CACGTCGAATGAACCAAGACA 58.868 47.619 0.00 0.00 32.57 3.41
145 146 2.400399 TCACGTCGAATGAACCAAGAC 58.600 47.619 0.00 0.00 0.00 3.01
146 147 2.295070 TCTCACGTCGAATGAACCAAGA 59.705 45.455 0.00 0.00 0.00 3.02
147 148 2.663602 CTCTCACGTCGAATGAACCAAG 59.336 50.000 0.00 0.00 0.00 3.61
148 149 2.295070 TCTCTCACGTCGAATGAACCAA 59.705 45.455 0.00 0.00 0.00 3.67
149 150 1.883926 TCTCTCACGTCGAATGAACCA 59.116 47.619 0.00 0.00 0.00 3.67
150 151 2.631418 TCTCTCACGTCGAATGAACC 57.369 50.000 0.00 0.00 0.00 3.62
151 152 2.854777 CCATCTCTCACGTCGAATGAAC 59.145 50.000 0.00 0.00 0.00 3.18
152 153 2.159240 CCCATCTCTCACGTCGAATGAA 60.159 50.000 0.00 0.00 0.00 2.57
153 154 1.405463 CCCATCTCTCACGTCGAATGA 59.595 52.381 0.00 0.00 0.00 2.57
154 155 1.845266 CCCATCTCTCACGTCGAATG 58.155 55.000 0.00 0.00 0.00 2.67
155 156 0.103208 GCCCATCTCTCACGTCGAAT 59.897 55.000 0.00 0.00 0.00 3.34
156 157 0.965866 AGCCCATCTCTCACGTCGAA 60.966 55.000 0.00 0.00 0.00 3.71
157 158 0.107361 TAGCCCATCTCTCACGTCGA 60.107 55.000 0.00 0.00 0.00 4.20
158 159 0.029567 GTAGCCCATCTCTCACGTCG 59.970 60.000 0.00 0.00 0.00 5.12
159 160 1.066303 CTGTAGCCCATCTCTCACGTC 59.934 57.143 0.00 0.00 0.00 4.34
160 161 1.107114 CTGTAGCCCATCTCTCACGT 58.893 55.000 0.00 0.00 0.00 4.49
161 162 0.387202 CCTGTAGCCCATCTCTCACG 59.613 60.000 0.00 0.00 0.00 4.35
162 163 0.755686 CCCTGTAGCCCATCTCTCAC 59.244 60.000 0.00 0.00 0.00 3.51
163 164 0.339859 ACCCTGTAGCCCATCTCTCA 59.660 55.000 0.00 0.00 0.00 3.27
164 165 0.755686 CACCCTGTAGCCCATCTCTC 59.244 60.000 0.00 0.00 0.00 3.20
165 166 0.043334 ACACCCTGTAGCCCATCTCT 59.957 55.000 0.00 0.00 0.00 3.10
166 167 0.912486 AACACCCTGTAGCCCATCTC 59.088 55.000 0.00 0.00 0.00 2.75
167 168 1.004745 CAAACACCCTGTAGCCCATCT 59.995 52.381 0.00 0.00 0.00 2.90
168 169 1.004277 TCAAACACCCTGTAGCCCATC 59.996 52.381 0.00 0.00 0.00 3.51
169 170 1.072266 TCAAACACCCTGTAGCCCAT 58.928 50.000 0.00 0.00 0.00 4.00
170 171 0.109723 GTCAAACACCCTGTAGCCCA 59.890 55.000 0.00 0.00 0.00 5.36
171 172 0.109723 TGTCAAACACCCTGTAGCCC 59.890 55.000 0.00 0.00 0.00 5.19
172 173 1.880027 CTTGTCAAACACCCTGTAGCC 59.120 52.381 0.00 0.00 0.00 3.93
173 174 1.880027 CCTTGTCAAACACCCTGTAGC 59.120 52.381 0.00 0.00 0.00 3.58
202 203 2.352032 GGACCACCTGAGACGGAGG 61.352 68.421 0.00 0.00 40.26 4.30
214 215 1.206578 CAACGAACATGCGGACCAC 59.793 57.895 0.00 0.00 35.12 4.16
221 222 2.932614 AGCATCTCTACAACGAACATGC 59.067 45.455 0.00 0.00 36.27 4.06
230 232 4.318332 CTTCCACAACAGCATCTCTACAA 58.682 43.478 0.00 0.00 0.00 2.41
254 256 2.104859 CGAGACGGACTACTCGCCA 61.105 63.158 0.00 0.00 46.54 5.69
277 292 3.456277 AGGAGCTGTAAAAAGGGATCGAT 59.544 43.478 0.00 0.00 0.00 3.59
279 294 3.118592 AGAGGAGCTGTAAAAAGGGATCG 60.119 47.826 0.00 0.00 0.00 3.69
280 295 4.080863 TGAGAGGAGCTGTAAAAAGGGATC 60.081 45.833 0.00 0.00 0.00 3.36
283 298 3.703001 TGAGAGGAGCTGTAAAAAGGG 57.297 47.619 0.00 0.00 0.00 3.95
284 299 3.868077 CGATGAGAGGAGCTGTAAAAAGG 59.132 47.826 0.00 0.00 0.00 3.11
301 321 5.943416 ACAGGGTTTGAAATACAATCGATGA 59.057 36.000 0.00 0.00 38.36 2.92
302 322 6.094048 AGACAGGGTTTGAAATACAATCGATG 59.906 38.462 0.00 0.00 38.36 3.84
328 352 3.532542 TGTCCGTGTCATTGTGTTAACA 58.467 40.909 3.59 3.59 0.00 2.41
339 363 1.557099 AGGATAAGCTGTCCGTGTCA 58.443 50.000 11.58 0.00 40.76 3.58
395 419 1.834896 TGGCGGCTATAGAAAGTTGGA 59.165 47.619 11.43 0.00 0.00 3.53
426 454 9.377383 GCAAACGATGCGTACTTAATTAATAAT 57.623 29.630 0.00 0.00 46.87 1.28
427 455 8.756376 GCAAACGATGCGTACTTAATTAATAA 57.244 30.769 0.00 0.00 46.87 1.40
526 564 8.792830 AATGCAGCTCTCAGTATTACTAAAAA 57.207 30.769 0.00 0.00 0.00 1.94
527 565 8.668353 CAAATGCAGCTCTCAGTATTACTAAAA 58.332 33.333 0.00 0.00 0.00 1.52
528 566 8.040727 TCAAATGCAGCTCTCAGTATTACTAAA 58.959 33.333 0.00 0.00 0.00 1.85
529 567 7.555965 TCAAATGCAGCTCTCAGTATTACTAA 58.444 34.615 0.00 0.00 0.00 2.24
530 568 7.112452 TCAAATGCAGCTCTCAGTATTACTA 57.888 36.000 0.00 0.00 0.00 1.82
531 569 5.982356 TCAAATGCAGCTCTCAGTATTACT 58.018 37.500 0.00 0.00 0.00 2.24
532 570 6.092670 TGTTCAAATGCAGCTCTCAGTATTAC 59.907 38.462 0.00 0.00 0.00 1.89
533 571 6.172630 TGTTCAAATGCAGCTCTCAGTATTA 58.827 36.000 0.00 0.00 0.00 0.98
534 572 5.005740 TGTTCAAATGCAGCTCTCAGTATT 58.994 37.500 0.00 0.00 0.00 1.89
535 573 4.582869 TGTTCAAATGCAGCTCTCAGTAT 58.417 39.130 0.00 0.00 0.00 2.12
735 3056 6.371809 TGAACGGCCACTTGATTAATTATC 57.628 37.500 2.24 0.00 0.00 1.75
754 3075 4.089923 GCGCAAGTGGATTAATTGTTGAAC 59.910 41.667 0.30 0.00 36.75 3.18
814 3135 3.211865 ACGTTCCCTCAAGAAAAAGGTC 58.788 45.455 0.00 0.00 0.00 3.85
903 3226 3.206211 GATGAGAGAGAGCCGGCCG 62.206 68.421 26.15 21.04 0.00 6.13
904 3227 2.733945 GATGAGAGAGAGCCGGCC 59.266 66.667 26.15 15.34 0.00 6.13
905 3228 2.733945 GGATGAGAGAGAGCCGGC 59.266 66.667 21.89 21.89 0.00 6.13
986 3310 4.219070 TCTCCCTCATTTTGCTTGAATGTG 59.781 41.667 7.00 5.34 36.23 3.21
990 3314 4.665451 TCATCTCCCTCATTTTGCTTGAA 58.335 39.130 0.00 0.00 0.00 2.69
991 3315 4.267536 CTCATCTCCCTCATTTTGCTTGA 58.732 43.478 0.00 0.00 0.00 3.02
1000 3324 3.184628 TGAACAACCTCATCTCCCTCAT 58.815 45.455 0.00 0.00 0.00 2.90
1128 3452 3.197116 ACCTAACACTTAAGATCCACGGG 59.803 47.826 10.09 5.04 0.00 5.28
1347 3678 2.039613 CTCTTTCTCCCAAGCTTCCACT 59.960 50.000 0.00 0.00 0.00 4.00
1373 3716 0.961857 TGCTCCATGCGTGCATCTTT 60.962 50.000 3.96 0.00 46.63 2.52
1423 3770 0.453282 CCATGCAAAGTGAAGCGTCG 60.453 55.000 0.00 0.00 0.00 5.12
1438 3785 0.934496 CGCCACACGGTATTACCATG 59.066 55.000 13.22 10.36 37.49 3.66
1440 3787 4.915298 CGCCACACGGTATTACCA 57.085 55.556 13.22 0.00 38.47 3.25
1505 3852 1.170442 CCCGCGTGGTAATTCCTTTT 58.830 50.000 15.14 0.00 37.07 2.27
1521 3868 1.873165 CCATCAAACCACGTTCCCG 59.127 57.895 0.00 0.00 40.83 5.14
1524 3871 0.951558 ACTGCCATCAAACCACGTTC 59.048 50.000 0.00 0.00 0.00 3.95
1578 3925 1.073025 ATGGAGCGGACAAGTTGCA 59.927 52.632 1.81 0.00 0.00 4.08
1621 3972 5.009610 TGGAGGAGCAAAAGTGATGTAAAAC 59.990 40.000 0.00 0.00 0.00 2.43
1628 3979 5.324409 TGTATTTGGAGGAGCAAAAGTGAT 58.676 37.500 0.00 0.00 0.00 3.06
1630 3987 5.452078 TTGTATTTGGAGGAGCAAAAGTG 57.548 39.130 0.00 0.00 0.00 3.16
1678 4085 4.335594 AGGAAAAGAAACCACGAGTGAAAG 59.664 41.667 4.59 0.00 0.00 2.62
1688 4095 6.989155 TCTAGACTACAGGAAAAGAAACCA 57.011 37.500 0.00 0.00 0.00 3.67
1753 4165 3.409026 AAGAAAGTCATCCTCGTTGCT 57.591 42.857 0.00 0.00 0.00 3.91
1756 4168 4.243270 CGGTTAAGAAAGTCATCCTCGTT 58.757 43.478 0.00 0.00 0.00 3.85
2101 4532 3.063861 CGCAAGCATCACATTAGCTAACA 59.936 43.478 8.70 0.00 37.70 2.41
2113 4544 3.057548 CCTGCACCGCAAGCATCA 61.058 61.111 0.00 0.00 41.82 3.07
2124 4561 2.290641 CAGGGCGTATATTTTCCTGCAC 59.709 50.000 0.00 0.00 38.55 4.57
2404 5598 7.601886 GGTATGAATCTCACATGGACTTCATAG 59.398 40.741 13.82 0.00 36.68 2.23
2413 5607 6.769341 TGATTTGAGGTATGAATCTCACATGG 59.231 38.462 0.00 0.00 39.43 3.66
2427 5623 6.839124 AACTTGCAATCATGATTTGAGGTA 57.161 33.333 18.41 4.32 37.89 3.08
2429 5625 6.403333 CAAACTTGCAATCATGATTTGAGG 57.597 37.500 18.41 10.43 37.89 3.86
2485 5682 4.202161 TGTTCAAGAGAGGAACTGTGAGAC 60.202 45.833 6.80 0.00 43.84 3.36
2687 6334 4.023707 AGGCATGCGAACTTTATATTCTGC 60.024 41.667 12.44 0.00 0.00 4.26
2688 6335 5.679734 AGGCATGCGAACTTTATATTCTG 57.320 39.130 12.44 0.00 0.00 3.02
2721 6558 1.218704 AGCCCCTATGAATGCACCAAT 59.781 47.619 0.00 0.00 0.00 3.16
2774 6613 1.454539 CCAGGTTTCCCAGTTCCGT 59.545 57.895 0.00 0.00 0.00 4.69
3037 7143 5.503927 ACATAAGATTGAATGCTGTGGAGT 58.496 37.500 0.00 0.00 0.00 3.85
3045 7151 7.930865 AGAGGAGAAGTACATAAGATTGAATGC 59.069 37.037 0.00 0.00 0.00 3.56
3088 7197 7.630242 TTTCCCAGTGAAATCATTATCTGAC 57.370 36.000 0.00 0.00 38.04 3.51
3110 7219 9.520515 CCAGCTACCAATATAATCTGGTATTTT 57.479 33.333 10.53 1.09 45.05 1.82
3321 7447 5.909621 AATGAATCTTCCACTTCCACATG 57.090 39.130 0.00 0.00 0.00 3.21
3788 8268 2.421619 CAAGTGAAGAAGAGCTCCCAC 58.578 52.381 10.93 10.82 33.11 4.61
3905 8408 7.112779 TCCTCAAAACCCTGCAAAAATTTTAA 58.887 30.769 3.34 0.00 0.00 1.52
3956 8463 8.160521 TGGTGAATTTCGAAAAGTCTATTGAA 57.839 30.769 15.66 0.00 0.00 2.69
4501 9039 7.336931 TCCAGTAATAGGAGTTTCAGAATTTGC 59.663 37.037 0.00 0.00 0.00 3.68
4565 9104 3.269643 AGTTAGCCCAGGAGCCTATTTTT 59.730 43.478 0.00 0.00 0.00 1.94
4990 10141 6.490040 AGGTAAGACACTGCAAATGTAACAAT 59.510 34.615 3.33 0.00 0.00 2.71
5204 10385 6.228616 TCAGGTTGATACACGGAATTATCA 57.771 37.500 0.00 0.00 33.73 2.15
5468 10649 1.780309 TGGGTGTCTGGGAAGTCAAAT 59.220 47.619 0.00 0.00 0.00 2.32
6269 11637 5.199024 TGTCACCAAAACATCTCAAATGG 57.801 39.130 0.00 0.00 0.00 3.16
6373 11741 4.996122 AGTCGACGATACATCTAACCTAGG 59.004 45.833 10.46 7.41 0.00 3.02
6418 11786 5.826643 ACCCACATGTTGTATCTTGGTAAT 58.173 37.500 0.00 0.00 0.00 1.89
6427 11795 2.356330 CCCGGTAACCCACATGTTGTAT 60.356 50.000 0.00 0.00 0.00 2.29
6445 11813 9.924650 AAGTAATAACTACTTATGATTAGCCCG 57.075 33.333 0.00 0.00 46.92 6.13
6567 11936 9.742144 TTATATGTAAACTGGTTGGTGTATTGT 57.258 29.630 0.00 0.00 0.00 2.71
6608 11978 8.035394 TCATAGTCAGTATTTCAAGTCAGGTTC 58.965 37.037 0.00 0.00 0.00 3.62
6614 11984 8.812329 GTGATGTCATAGTCAGTATTTCAAGTC 58.188 37.037 0.00 0.00 0.00 3.01
6625 11995 8.707938 TGTTAGAAATGTGATGTCATAGTCAG 57.292 34.615 0.00 0.00 0.00 3.51
6626 11996 9.154847 CTTGTTAGAAATGTGATGTCATAGTCA 57.845 33.333 0.00 0.00 0.00 3.41
6627 11997 9.155975 ACTTGTTAGAAATGTGATGTCATAGTC 57.844 33.333 0.00 0.00 0.00 2.59
6628 11998 8.939929 CACTTGTTAGAAATGTGATGTCATAGT 58.060 33.333 0.00 0.00 0.00 2.12
6629 11999 9.154847 TCACTTGTTAGAAATGTGATGTCATAG 57.845 33.333 0.00 0.00 33.45 2.23
6630 12000 9.500785 TTCACTTGTTAGAAATGTGATGTCATA 57.499 29.630 0.00 0.00 37.47 2.15
6631 12001 7.984422 TCACTTGTTAGAAATGTGATGTCAT 57.016 32.000 0.00 0.00 33.45 3.06
6633 12003 7.865707 AGTTCACTTGTTAGAAATGTGATGTC 58.134 34.615 0.00 0.00 37.47 3.06
6634 12004 7.807977 AGTTCACTTGTTAGAAATGTGATGT 57.192 32.000 0.00 0.00 37.47 3.06
6635 12005 9.173939 GAAAGTTCACTTGTTAGAAATGTGATG 57.826 33.333 0.00 0.00 37.47 3.07
6636 12006 9.125026 AGAAAGTTCACTTGTTAGAAATGTGAT 57.875 29.630 0.00 0.00 37.47 3.06
6638 12008 8.184192 ACAGAAAGTTCACTTGTTAGAAATGTG 58.816 33.333 0.00 0.00 36.12 3.21
6639 12009 8.281212 ACAGAAAGTTCACTTGTTAGAAATGT 57.719 30.769 0.00 0.00 36.12 2.71
6693 12071 8.727910 CCTGTTTTACTACCTTTCTTTATCACC 58.272 37.037 0.00 0.00 0.00 4.02
6697 12075 9.063615 CACACCTGTTTTACTACCTTTCTTTAT 57.936 33.333 0.00 0.00 0.00 1.40
6726 12107 0.597637 CACCAACTATAGCTCCCGCG 60.598 60.000 0.00 0.00 42.32 6.46
6786 12167 5.143369 AGTTTTCTCTTTTTCTGCCTCCAT 58.857 37.500 0.00 0.00 0.00 3.41
6813 12200 2.647299 TCCCATACCTTCTTGCTCCAAA 59.353 45.455 0.00 0.00 0.00 3.28
6920 12315 4.307032 AGGTCTTCCAACAATGCTGTAT 57.693 40.909 0.00 0.00 33.45 2.29
7516 12997 4.263905 ACTTCCCTTTTCCTGCATATGTGA 60.264 41.667 4.29 0.00 0.00 3.58
7616 13097 1.081906 GTGCACAACACGGATGCTG 60.082 57.895 13.17 0.00 40.07 4.41
7742 13225 6.503524 CACTTACAATGTACCAGCAACTTTT 58.496 36.000 0.00 0.00 0.00 2.27
7816 13301 2.221055 GCAGTCGATAAACGCCATTAGG 59.779 50.000 0.00 0.00 42.26 2.69
7836 13324 4.229876 GCAAGATAACCACTTGACAAAGC 58.770 43.478 11.08 0.00 44.92 3.51
8579 14069 2.168728 ACGAATCTCTACCCCAAGAAGC 59.831 50.000 0.00 0.00 0.00 3.86
8636 14126 5.864628 ACGAAACCTCTTAAGCAAAGATC 57.135 39.130 0.00 0.00 43.32 2.75
8657 14147 8.440833 CAACCTACTACTAAACAATGCAAGTAC 58.559 37.037 0.00 0.00 0.00 2.73
8671 14161 5.705397 TCTGCTACTCCAACCTACTACTA 57.295 43.478 0.00 0.00 0.00 1.82
8672 14162 4.587976 TCTGCTACTCCAACCTACTACT 57.412 45.455 0.00 0.00 0.00 2.57
8673 14163 6.956202 TTATCTGCTACTCCAACCTACTAC 57.044 41.667 0.00 0.00 0.00 2.73
8762 14258 2.675889 CGCGGGGTAACAACAGTAATCT 60.676 50.000 0.00 0.00 39.74 2.40
8822 14320 7.644986 TGTTTGAAAACTTTTGTCGTTTGAT 57.355 28.000 7.39 0.00 39.59 2.57
9045 14549 7.819900 CAGCACTAGCCCCTAAATTAGTATTAG 59.180 40.741 0.00 0.00 43.56 1.73
9207 14719 1.531602 GAGTGGGCTGGTTTGGCTT 60.532 57.895 0.00 0.00 0.00 4.35
9313 14826 2.908015 GCGTCCTTATCCCCTGCA 59.092 61.111 0.00 0.00 0.00 4.41
9506 15019 2.439701 CTCTGGACGGGCGGAGTA 60.440 66.667 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.