Multiple sequence alignment - TraesCS7A01G036800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G036800 chr7A 100.000 2474 0 0 1 2474 16602591 16605064 0.000000e+00 4569.0
1 TraesCS7A01G036800 chr7A 88.400 250 19 3 2217 2457 16655141 16655389 2.410000e-75 292.0
2 TraesCS7A01G036800 chr7A 95.495 111 5 0 1609 1719 37125660 37125770 7.030000e-41 178.0
3 TraesCS7A01G036800 chr7A 88.750 80 9 0 768 847 15690231 15690152 5.630000e-17 99.0
4 TraesCS7A01G036800 chr7A 95.833 48 1 1 36 82 700417413 700417366 2.640000e-10 76.8
5 TraesCS7A01G036800 chr4A 89.585 1565 115 24 76 1603 717048488 717046935 0.000000e+00 1943.0
6 TraesCS7A01G036800 chr4A 98.131 107 2 0 1613 1719 600557018 600556912 1.170000e-43 187.0
7 TraesCS7A01G036800 chr4A 98.131 107 2 0 1613 1719 625253233 625253127 1.170000e-43 187.0
8 TraesCS7A01G036800 chr4A 93.388 121 6 2 1600 1719 93563121 93563002 7.030000e-41 178.0
9 TraesCS7A01G036800 chr4A 92.126 127 9 1 1613 1738 440870370 440870496 7.030000e-41 178.0
10 TraesCS7A01G036800 chr4A 71.478 582 139 19 760 1332 717971628 717972191 2.000000e-26 130.0
11 TraesCS7A01G036800 chr4A 96.053 76 3 0 1 76 128339804 128339879 9.290000e-25 124.0
12 TraesCS7A01G036800 chr4A 88.636 88 10 0 760 847 717971403 717971490 9.360000e-20 108.0
13 TraesCS7A01G036800 chr4A 100.000 30 0 0 2178 2207 717046081 717046052 3.440000e-04 56.5
14 TraesCS7A01G036800 chr7D 90.627 1259 98 11 76 1332 17208889 17210129 0.000000e+00 1653.0
15 TraesCS7A01G036800 chr7D 89.600 250 17 3 2217 2457 17263886 17264135 2.390000e-80 309.0
16 TraesCS7A01G036800 chr7D 91.379 116 9 1 2330 2445 17214432 17214546 9.160000e-35 158.0
17 TraesCS7A01G036800 chr7D 71.821 582 141 17 760 1332 16705346 16704779 7.130000e-31 145.0
18 TraesCS7A01G036800 chr7D 92.553 94 5 2 2210 2302 17214148 17214240 1.540000e-27 134.0
19 TraesCS7A01G036800 chr7D 93.182 88 6 0 1524 1611 17210284 17210371 2.000000e-26 130.0
20 TraesCS7A01G036800 chr7D 87.500 88 10 1 760 847 16705570 16705484 1.570000e-17 100.0
21 TraesCS7A01G036800 chr2B 99.074 108 1 0 1612 1719 443378053 443378160 6.980000e-46 195.0
22 TraesCS7A01G036800 chr2B 96.053 76 3 0 1 76 638855037 638854962 9.290000e-25 124.0
23 TraesCS7A01G036800 chr3A 98.131 107 2 0 1613 1719 688273718 688273612 1.170000e-43 187.0
24 TraesCS7A01G036800 chr3A 95.652 46 2 0 36 81 520408436 520408391 9.490000e-10 75.0
25 TraesCS7A01G036800 chr5A 90.441 136 10 3 1605 1738 9610333 9610199 2.530000e-40 176.0
26 TraesCS7A01G036800 chr5A 92.105 76 6 0 1 76 10163470 10163395 9.360000e-20 108.0
27 TraesCS7A01G036800 chr3B 92.000 125 6 4 1612 1736 772411570 772411450 3.270000e-39 172.0
28 TraesCS7A01G036800 chr2D 96.104 77 2 1 1 76 8399287 8399363 9.290000e-25 124.0
29 TraesCS7A01G036800 chr4B 93.151 73 5 0 6 78 598611743 598611815 9.360000e-20 108.0
30 TraesCS7A01G036800 chr5B 90.141 71 7 0 6 76 687081380 687081450 2.620000e-15 93.5
31 TraesCS7A01G036800 chrUn 95.833 48 1 1 36 82 83451821 83451868 2.640000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G036800 chr7A 16602591 16605064 2473 False 4569.00 4569 100.00000 1 2474 1 chr7A.!!$F1 2473
1 TraesCS7A01G036800 chr4A 717046052 717048488 2436 True 999.75 1943 94.79250 76 2207 2 chr4A.!!$R4 2131
2 TraesCS7A01G036800 chr7D 17208889 17214546 5657 False 518.75 1653 91.93525 76 2445 4 chr7D.!!$F2 2369

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 71 0.099259 CAACGCGTGCCATCAATGAT 59.901 50.0 14.98 0.0 0.0 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2042 2999 0.035152 ACCAGCAAATCTCGGCATCA 60.035 50.0 0.0 0.0 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 4.983671 AGAAAATTCCAAATAGACGGGC 57.016 40.909 0.00 0.00 0.00 6.13
47 48 4.340617 AGAAAATTCCAAATAGACGGGCA 58.659 39.130 0.00 0.00 0.00 5.36
48 49 4.157840 AGAAAATTCCAAATAGACGGGCAC 59.842 41.667 0.00 0.00 0.00 5.01
50 51 0.391927 TTCCAAATAGACGGGCACGG 60.392 55.000 15.46 0.00 46.48 4.94
68 69 4.060658 CAACGCGTGCCATCAATG 57.939 55.556 14.98 0.00 0.00 2.82
69 70 1.501292 CAACGCGTGCCATCAATGA 59.499 52.632 14.98 0.00 0.00 2.57
70 71 0.099259 CAACGCGTGCCATCAATGAT 59.901 50.000 14.98 0.00 0.00 2.45
71 72 0.378257 AACGCGTGCCATCAATGATC 59.622 50.000 14.98 0.00 0.00 2.92
72 73 0.462581 ACGCGTGCCATCAATGATCT 60.463 50.000 12.93 0.00 0.00 2.75
73 74 1.202521 ACGCGTGCCATCAATGATCTA 60.203 47.619 12.93 0.00 0.00 1.98
74 75 1.458445 CGCGTGCCATCAATGATCTAG 59.542 52.381 0.00 0.00 0.00 2.43
119 120 6.391227 AATGTGGTGTTTTCTTTACCTCAG 57.609 37.500 0.00 0.00 40.15 3.35
179 180 2.226674 GCAGCCCACTAAACAAGAGAAC 59.773 50.000 0.00 0.00 0.00 3.01
182 183 3.391296 AGCCCACTAAACAAGAGAACTCA 59.609 43.478 4.64 0.00 0.00 3.41
295 301 6.491062 TCCAAGACAATCCATGGCATATAAAG 59.509 38.462 6.96 0.00 40.75 1.85
464 470 9.908152 AAACTATAACTTCCACAAAAAGCATAC 57.092 29.630 0.00 0.00 0.00 2.39
673 680 9.271828 GAGATTACAAAATGGGTTTCACAAAAT 57.728 29.630 0.00 0.00 0.00 1.82
693 700 7.616935 ACAAAATGATGAAACCTGGATCTATGT 59.383 33.333 0.00 0.00 0.00 2.29
753 760 4.217836 ACTGATCTTGCATGACAGTCAT 57.782 40.909 21.29 10.53 37.24 3.06
867 877 4.212716 AGGGGAAAAACAGACACTTTACC 58.787 43.478 0.00 0.00 32.96 2.85
879 889 7.852263 ACAGACACTTTACCAAAGCTATCTAT 58.148 34.615 0.00 0.00 42.27 1.98
961 971 7.585884 AGATCCTCATCCATCATCCTTTAAT 57.414 36.000 0.00 0.00 0.00 1.40
1018 1028 5.813383 ACATCATGAAGACCTTGTTCATCT 58.187 37.500 4.68 0.00 41.69 2.90
1021 1031 6.119240 TCATGAAGACCTTGTTCATCTTCT 57.881 37.500 12.89 0.00 45.67 2.85
1035 1045 3.012274 TCATCTTCTCTCTCCTCACCCTT 59.988 47.826 0.00 0.00 0.00 3.95
1038 1048 0.115152 TCTCTCTCCTCACCCTTGCA 59.885 55.000 0.00 0.00 0.00 4.08
1040 1050 0.178921 TCTCTCCTCACCCTTGCAGT 60.179 55.000 0.00 0.00 0.00 4.40
1041 1051 0.689623 CTCTCCTCACCCTTGCAGTT 59.310 55.000 0.00 0.00 0.00 3.16
1045 1055 0.673644 CCTCACCCTTGCAGTTACCG 60.674 60.000 0.00 0.00 0.00 4.02
1047 1057 0.981183 TCACCCTTGCAGTTACCGAT 59.019 50.000 0.00 0.00 0.00 4.18
1076 1086 1.334243 GCAGCTAGACACTACCCGTAG 59.666 57.143 0.00 0.22 39.04 3.51
1081 1091 0.039326 AGACACTACCCGTAGCCAGT 59.961 55.000 1.71 0.00 36.66 4.00
1150 1160 1.065199 AGCAGATGTACCCATGTGTGG 60.065 52.381 0.00 0.00 42.71 4.17
1165 1175 0.592637 TGTGGAATTTCTGCAGCACG 59.407 50.000 9.47 0.00 0.00 5.34
1167 1177 1.135859 GTGGAATTTCTGCAGCACGAG 60.136 52.381 9.47 0.00 0.00 4.18
1194 1204 2.693797 CAGTGACACTGCCATTTGTC 57.306 50.000 22.06 0.69 39.62 3.18
1200 1210 0.883833 CACTGCCATTTGTCCAGTCC 59.116 55.000 0.00 0.00 37.70 3.85
1221 1231 1.062587 CGTATGTGGCAACTTAGCAGC 59.937 52.381 0.00 0.00 35.83 5.25
1250 1260 4.996434 GCGACACCAGTGCTGCCT 62.996 66.667 0.00 0.00 0.00 4.75
1269 1279 1.593750 GCAGCTAGCACAGATCCCG 60.594 63.158 18.83 0.00 44.79 5.14
1287 1297 1.673665 GGAGCAGTTCAGGTGCCAG 60.674 63.158 0.00 0.00 42.24 4.85
1290 1300 2.674380 CAGTTCAGGTGCCAGGCC 60.674 66.667 9.64 0.00 0.00 5.19
1296 1306 3.025599 AGGTGCCAGGCCATCCAT 61.026 61.111 9.64 0.00 33.74 3.41
1298 1308 1.228367 GGTGCCAGGCCATCCATAG 60.228 63.158 9.64 0.00 33.74 2.23
1373 1413 2.159184 TCATGAGGATGTCGCTTCAGAC 60.159 50.000 0.00 0.00 41.30 3.51
1391 1431 2.324330 CCTTGCCGTCGATGTGCAA 61.324 57.895 23.29 23.29 42.28 4.08
1398 1438 0.989164 CGTCGATGTGCAACGTGTAT 59.011 50.000 0.00 0.00 42.39 2.29
1401 1441 1.724082 TCGATGTGCAACGTGTATGTG 59.276 47.619 0.00 0.00 42.39 3.21
1443 1484 1.906824 CATCCCCATGGCCAGATGC 60.907 63.158 17.04 0.00 40.16 3.91
1464 1505 1.219124 CGGTGGATGGGTCTGTGAG 59.781 63.158 0.00 0.00 0.00 3.51
1482 1523 2.289631 TGAGTCAATGTAGTGGTGGCAG 60.290 50.000 0.00 0.00 0.00 4.85
1483 1524 1.699634 AGTCAATGTAGTGGTGGCAGT 59.300 47.619 0.00 0.00 0.00 4.40
1520 1561 1.490693 GATCATGCGTGGCCTGTACG 61.491 60.000 9.62 9.62 43.93 3.67
1521 1562 2.923426 ATCATGCGTGGCCTGTACGG 62.923 60.000 15.09 0.00 41.56 4.02
1522 1563 3.387091 ATGCGTGGCCTGTACGGA 61.387 61.111 15.09 12.96 45.50 4.69
1551 1592 7.951591 ACTAGTTGCAACTTGGAAATAACAAT 58.048 30.769 35.20 11.78 40.37 2.71
1596 1637 9.087424 GAATAAAGCATTTTCCTGAATAACACC 57.913 33.333 0.00 0.00 40.09 4.16
1620 1661 3.334583 TGTCTTGCATGGTACTTCCTC 57.665 47.619 0.00 0.00 37.07 3.71
1621 1662 2.027192 TGTCTTGCATGGTACTTCCTCC 60.027 50.000 0.00 0.00 37.07 4.30
1622 1663 1.207089 TCTTGCATGGTACTTCCTCCG 59.793 52.381 0.00 0.00 37.07 4.63
1623 1664 0.981183 TTGCATGGTACTTCCTCCGT 59.019 50.000 0.00 0.00 37.07 4.69
1624 1665 0.535335 TGCATGGTACTTCCTCCGTC 59.465 55.000 0.00 0.00 37.07 4.79
1625 1666 0.179081 GCATGGTACTTCCTCCGTCC 60.179 60.000 0.00 0.00 37.07 4.79
1626 1667 0.464452 CATGGTACTTCCTCCGTCCC 59.536 60.000 0.00 0.00 37.07 4.46
1627 1668 0.042131 ATGGTACTTCCTCCGTCCCA 59.958 55.000 0.00 0.00 37.07 4.37
1628 1669 0.178926 TGGTACTTCCTCCGTCCCAA 60.179 55.000 0.00 0.00 37.07 4.12
1629 1670 0.978907 GGTACTTCCTCCGTCCCAAA 59.021 55.000 0.00 0.00 0.00 3.28
1630 1671 1.558294 GGTACTTCCTCCGTCCCAAAT 59.442 52.381 0.00 0.00 0.00 2.32
1631 1672 2.026542 GGTACTTCCTCCGTCCCAAATT 60.027 50.000 0.00 0.00 0.00 1.82
1632 1673 3.198417 GGTACTTCCTCCGTCCCAAATTA 59.802 47.826 0.00 0.00 0.00 1.40
1633 1674 3.345508 ACTTCCTCCGTCCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
1634 1675 2.910977 ACTTCCTCCGTCCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
1635 1676 3.329814 ACTTCCTCCGTCCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
1636 1677 3.343941 TCCTCCGTCCCAAATTACTTG 57.656 47.619 0.00 0.00 34.52 3.16
1637 1678 2.640826 TCCTCCGTCCCAAATTACTTGT 59.359 45.455 0.00 0.00 32.65 3.16
1638 1679 3.007635 CCTCCGTCCCAAATTACTTGTC 58.992 50.000 0.00 0.00 32.65 3.18
1639 1680 2.671396 CTCCGTCCCAAATTACTTGTCG 59.329 50.000 0.00 0.00 32.65 4.35
1640 1681 1.129811 CCGTCCCAAATTACTTGTCGC 59.870 52.381 0.00 0.00 32.65 5.19
1641 1682 1.801771 CGTCCCAAATTACTTGTCGCA 59.198 47.619 0.00 0.00 32.65 5.10
1642 1683 2.159707 CGTCCCAAATTACTTGTCGCAG 60.160 50.000 0.00 0.00 32.65 5.18
1643 1684 3.071479 GTCCCAAATTACTTGTCGCAGA 58.929 45.455 0.00 0.00 32.65 4.26
1644 1685 3.500680 GTCCCAAATTACTTGTCGCAGAA 59.499 43.478 0.00 0.00 39.69 3.02
1645 1686 4.023536 GTCCCAAATTACTTGTCGCAGAAA 60.024 41.667 0.00 0.00 39.69 2.52
1646 1687 4.764823 TCCCAAATTACTTGTCGCAGAAAT 59.235 37.500 0.00 0.00 39.69 2.17
1647 1688 4.858692 CCCAAATTACTTGTCGCAGAAATG 59.141 41.667 0.00 0.00 39.69 2.32
1648 1689 4.858692 CCAAATTACTTGTCGCAGAAATGG 59.141 41.667 0.00 0.00 39.69 3.16
1649 1690 5.335583 CCAAATTACTTGTCGCAGAAATGGA 60.336 40.000 0.00 0.00 39.69 3.41
1650 1691 6.324819 CAAATTACTTGTCGCAGAAATGGAT 58.675 36.000 0.00 0.00 39.69 3.41
1651 1692 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
1652 1693 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
1653 1694 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
1654 1695 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
1655 1696 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
1656 1697 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
1657 1698 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
1658 1699 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
1659 1700 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
1660 1701 6.183360 TGTCGCAGAAATGGATGTATCTAGAA 60.183 38.462 0.00 0.00 39.69 2.10
1661 1702 6.144724 GTCGCAGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 39.69 3.01
1662 1703 6.040955 TCGCAGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
1663 1704 7.230712 TCGCAGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
1664 1705 7.867909 CGCAGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
1665 1706 9.547753 GCAGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
1692 1733 6.625362 ACATCTAGATACATCCATACTTGCG 58.375 40.000 4.54 0.00 0.00 4.85
1693 1734 6.434340 ACATCTAGATACATCCATACTTGCGA 59.566 38.462 4.54 0.00 0.00 5.10
1694 1735 6.255596 TCTAGATACATCCATACTTGCGAC 57.744 41.667 0.00 0.00 0.00 5.19
1695 1736 4.937201 AGATACATCCATACTTGCGACA 57.063 40.909 0.00 0.00 0.00 4.35
1696 1737 5.276461 AGATACATCCATACTTGCGACAA 57.724 39.130 0.00 0.00 0.00 3.18
1697 1738 5.292765 AGATACATCCATACTTGCGACAAG 58.707 41.667 15.16 15.16 0.00 3.16
1698 1739 3.334583 ACATCCATACTTGCGACAAGT 57.665 42.857 22.53 22.53 0.00 3.16
1699 1740 4.465632 ACATCCATACTTGCGACAAGTA 57.534 40.909 24.52 24.52 37.18 2.24
1700 1741 4.827692 ACATCCATACTTGCGACAAGTAA 58.172 39.130 25.44 15.64 36.45 2.24
1701 1742 5.428253 ACATCCATACTTGCGACAAGTAAT 58.572 37.500 25.44 16.71 36.45 1.89
1702 1743 5.880332 ACATCCATACTTGCGACAAGTAATT 59.120 36.000 25.44 14.21 36.45 1.40
1703 1744 6.374333 ACATCCATACTTGCGACAAGTAATTT 59.626 34.615 25.44 13.70 36.45 1.82
1704 1745 6.176975 TCCATACTTGCGACAAGTAATTTG 57.823 37.500 25.44 20.61 42.68 2.32
1705 1746 5.123186 TCCATACTTGCGACAAGTAATTTGG 59.877 40.000 25.46 25.46 41.25 3.28
1706 1747 5.123186 CCATACTTGCGACAAGTAATTTGGA 59.877 40.000 26.28 13.61 41.25 3.53
1707 1748 6.348950 CCATACTTGCGACAAGTAATTTGGAA 60.349 38.462 26.28 13.14 41.25 3.53
1708 1749 4.855531 ACTTGCGACAAGTAATTTGGAAC 58.144 39.130 19.21 0.00 41.25 3.62
1709 1750 3.529634 TGCGACAAGTAATTTGGAACG 57.470 42.857 0.00 0.00 41.25 3.95
1710 1751 2.224549 TGCGACAAGTAATTTGGAACGG 59.775 45.455 0.00 0.00 41.25 4.44
1711 1752 2.481185 GCGACAAGTAATTTGGAACGGA 59.519 45.455 0.00 0.00 41.25 4.69
1712 1753 3.424433 GCGACAAGTAATTTGGAACGGAG 60.424 47.826 0.00 0.00 41.25 4.63
1713 1754 3.124636 CGACAAGTAATTTGGAACGGAGG 59.875 47.826 0.00 0.00 41.25 4.30
1714 1755 3.418047 ACAAGTAATTTGGAACGGAGGG 58.582 45.455 0.00 0.00 41.25 4.30
1715 1756 3.073356 ACAAGTAATTTGGAACGGAGGGA 59.927 43.478 0.00 0.00 41.25 4.20
1716 1757 3.629142 AGTAATTTGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
1743 1784 7.131498 GATGAAATCTAAGATGCATCTGACC 57.869 40.000 29.34 15.12 41.17 4.02
1745 1786 2.515926 TCTAAGATGCATCTGACCGC 57.484 50.000 29.34 0.00 37.19 5.68
1750 1791 0.460811 GATGCATCTGACCGCACTGA 60.461 55.000 19.70 0.00 41.79 3.41
1758 1799 0.602638 TGACCGCACTGAACCATCAC 60.603 55.000 0.00 0.00 0.00 3.06
1760 1801 2.390599 CCGCACTGAACCATCACCG 61.391 63.158 0.00 0.00 0.00 4.94
1764 1805 1.606994 GCACTGAACCATCACCGTACA 60.607 52.381 0.00 0.00 0.00 2.90
1769 1810 2.892215 TGAACCATCACCGTACACTGTA 59.108 45.455 0.00 0.00 0.00 2.74
1771 1812 2.522185 ACCATCACCGTACACTGTACT 58.478 47.619 15.76 0.00 0.00 2.73
1772 1813 2.490903 ACCATCACCGTACACTGTACTC 59.509 50.000 15.76 0.00 0.00 2.59
1773 1814 2.753452 CCATCACCGTACACTGTACTCT 59.247 50.000 15.76 0.00 0.00 3.24
1774 1815 3.427638 CCATCACCGTACACTGTACTCTG 60.428 52.174 15.76 10.80 0.00 3.35
1775 1816 2.854963 TCACCGTACACTGTACTCTGT 58.145 47.619 15.76 8.42 0.00 3.41
1776 1817 4.006780 TCACCGTACACTGTACTCTGTA 57.993 45.455 15.76 0.00 0.00 2.74
1777 1818 4.582869 TCACCGTACACTGTACTCTGTAT 58.417 43.478 15.76 0.00 0.00 2.29
1778 1819 4.393990 TCACCGTACACTGTACTCTGTATG 59.606 45.833 15.76 12.40 31.99 2.39
1779 1820 3.128242 ACCGTACACTGTACTCTGTATGC 59.872 47.826 15.76 0.00 31.18 3.14
1780 1821 3.488721 CCGTACACTGTACTCTGTATGCC 60.489 52.174 15.76 1.13 31.18 4.40
1781 1822 3.377485 CGTACACTGTACTCTGTATGCCT 59.623 47.826 15.76 0.00 0.00 4.75
1782 1823 4.496010 CGTACACTGTACTCTGTATGCCTC 60.496 50.000 15.76 0.00 0.00 4.70
1783 1824 3.702792 ACACTGTACTCTGTATGCCTCT 58.297 45.455 0.00 0.00 0.00 3.69
1784 1825 4.090090 ACACTGTACTCTGTATGCCTCTT 58.910 43.478 0.00 0.00 0.00 2.85
1785 1826 4.081972 ACACTGTACTCTGTATGCCTCTTG 60.082 45.833 0.00 0.00 0.00 3.02
1786 1827 4.081972 CACTGTACTCTGTATGCCTCTTGT 60.082 45.833 0.00 0.00 0.00 3.16
1787 1828 4.528596 ACTGTACTCTGTATGCCTCTTGTT 59.471 41.667 0.00 0.00 0.00 2.83
1788 1829 5.715279 ACTGTACTCTGTATGCCTCTTGTTA 59.285 40.000 0.00 0.00 0.00 2.41
1789 1830 6.381420 ACTGTACTCTGTATGCCTCTTGTTAT 59.619 38.462 0.00 0.00 0.00 1.89
1790 1831 6.573434 TGTACTCTGTATGCCTCTTGTTATG 58.427 40.000 0.00 0.00 0.00 1.90
1791 1832 5.683876 ACTCTGTATGCCTCTTGTTATGT 57.316 39.130 0.00 0.00 0.00 2.29
1792 1833 6.054860 ACTCTGTATGCCTCTTGTTATGTT 57.945 37.500 0.00 0.00 0.00 2.71
1793 1834 7.182817 ACTCTGTATGCCTCTTGTTATGTTA 57.817 36.000 0.00 0.00 0.00 2.41
1794 1835 7.620880 ACTCTGTATGCCTCTTGTTATGTTAA 58.379 34.615 0.00 0.00 0.00 2.01
1795 1836 8.100791 ACTCTGTATGCCTCTTGTTATGTTAAA 58.899 33.333 0.00 0.00 0.00 1.52
1796 1837 8.263940 TCTGTATGCCTCTTGTTATGTTAAAC 57.736 34.615 0.00 0.00 0.00 2.01
1797 1838 7.335924 TCTGTATGCCTCTTGTTATGTTAAACC 59.664 37.037 0.00 0.00 0.00 3.27
1798 1839 6.943146 TGTATGCCTCTTGTTATGTTAAACCA 59.057 34.615 0.00 0.00 0.00 3.67
1815 1856 4.734398 AACCAAAAAGTTCACAGCATGA 57.266 36.364 0.00 0.00 39.69 3.07
1826 1867 1.554160 CACAGCATGAAGAGGGAGAGT 59.446 52.381 0.00 0.00 39.69 3.24
1827 1868 2.762887 CACAGCATGAAGAGGGAGAGTA 59.237 50.000 0.00 0.00 39.69 2.59
1828 1869 2.763448 ACAGCATGAAGAGGGAGAGTAC 59.237 50.000 0.00 0.00 39.69 2.73
1830 1871 3.387374 CAGCATGAAGAGGGAGAGTACAT 59.613 47.826 0.00 0.00 39.69 2.29
1856 2805 4.329638 AGAAGAGAGACCAGATCAAGGA 57.670 45.455 10.82 0.00 0.00 3.36
1864 2813 7.018550 AGAGAGACCAGATCAAGGAGATATACT 59.981 40.741 10.82 1.63 37.00 2.12
1865 2814 6.947733 AGAGACCAGATCAAGGAGATATACTG 59.052 42.308 10.82 0.00 37.00 2.74
1883 2832 6.834959 ATACTGACATGAACGAGCTTTATG 57.165 37.500 0.00 0.00 33.08 1.90
1890 2839 5.630680 ACATGAACGAGCTTTATGCAAAAAG 59.369 36.000 0.00 0.00 45.94 2.27
1906 2855 7.861176 TGCAAAAAGTTAACGGATTTGATAC 57.139 32.000 24.88 14.55 33.86 2.24
1910 2859 7.754851 AAAAGTTAACGGATTTGATACCAGT 57.245 32.000 0.00 0.00 0.00 4.00
1934 2884 4.112634 TGGCATACCCAGACTTCTTTTT 57.887 40.909 0.00 0.00 39.18 1.94
1960 2910 8.650143 AGTACAAATGATAAACCTGAACCAAT 57.350 30.769 0.00 0.00 0.00 3.16
1981 2932 9.480053 ACCAATATGCTACAATCAATTAAATGC 57.520 29.630 0.00 0.00 0.00 3.56
1986 2937 7.546778 TGCTACAATCAATTAAATGCTACGA 57.453 32.000 0.00 0.00 0.00 3.43
1987 2938 7.630026 TGCTACAATCAATTAAATGCTACGAG 58.370 34.615 0.00 0.00 0.00 4.18
1988 2939 7.279981 TGCTACAATCAATTAAATGCTACGAGT 59.720 33.333 0.00 0.00 0.00 4.18
2026 2983 0.400594 GAAGTGGCAGGTAAGGGTGT 59.599 55.000 0.00 0.00 0.00 4.16
2028 2985 1.971695 GTGGCAGGTAAGGGTGTGC 60.972 63.158 0.00 0.00 35.07 4.57
2034 2991 2.048503 GTAAGGGTGTGCGAGCGT 60.049 61.111 0.00 0.00 0.00 5.07
2043 3000 2.509111 TGCGAGCGTGCATACCTG 60.509 61.111 1.54 0.00 40.62 4.00
2044 3001 2.202743 GCGAGCGTGCATACCTGA 60.203 61.111 0.00 0.00 34.15 3.86
2045 3002 1.592669 GCGAGCGTGCATACCTGAT 60.593 57.895 0.00 0.00 34.15 2.90
2046 3003 1.825285 GCGAGCGTGCATACCTGATG 61.825 60.000 0.00 0.00 38.73 3.07
2057 3014 1.953559 TACCTGATGCCGAGATTTGC 58.046 50.000 0.00 0.00 0.00 3.68
2060 3017 0.661552 CTGATGCCGAGATTTGCTGG 59.338 55.000 0.00 0.00 0.00 4.85
2067 3024 1.675641 GAGATTTGCTGGTGCCGGT 60.676 57.895 1.90 0.00 38.71 5.28
2092 3049 3.123620 CTCTTCAGCGGTGGCAGC 61.124 66.667 15.67 6.62 43.41 5.25
2110 3067 4.918201 GGCTTCCTCCGGCCATCG 62.918 72.222 2.24 0.00 46.84 3.84
2112 3069 2.107141 CTTCCTCCGGCCATCGAC 59.893 66.667 2.24 0.00 42.43 4.20
2113 3070 2.682136 TTCCTCCGGCCATCGACA 60.682 61.111 2.24 0.00 42.43 4.35
2114 3071 2.907897 CTTCCTCCGGCCATCGACAC 62.908 65.000 2.24 0.00 42.43 3.67
2117 3074 3.295304 CTCCGGCCATCGACACACA 62.295 63.158 2.24 0.00 42.43 3.72
2119 3076 2.356913 CGGCCATCGACACACACA 60.357 61.111 2.24 0.00 42.43 3.72
2120 3077 2.667318 CGGCCATCGACACACACAC 61.667 63.158 2.24 0.00 42.43 3.82
2122 3079 2.667318 GCCATCGACACACACACGG 61.667 63.158 0.00 0.00 0.00 4.94
2123 3080 1.300620 CCATCGACACACACACGGT 60.301 57.895 0.00 0.00 0.00 4.83
2124 3081 1.282248 CCATCGACACACACACGGTC 61.282 60.000 0.00 0.00 0.00 4.79
2126 3083 1.740332 ATCGACACACACACGGTCCA 61.740 55.000 0.00 0.00 0.00 4.02
2129 3086 0.033504 GACACACACACGGTCCATCT 59.966 55.000 0.00 0.00 0.00 2.90
2132 3089 1.272490 CACACACACGGTCCATCTACT 59.728 52.381 0.00 0.00 0.00 2.57
2133 3090 1.272490 ACACACACGGTCCATCTACTG 59.728 52.381 0.00 0.00 0.00 2.74
2136 3093 0.895530 ACACGGTCCATCTACTGGTG 59.104 55.000 0.00 0.00 46.08 4.17
2162 3168 4.172512 CCCAGGAGCTGCGCTGAT 62.173 66.667 19.32 12.48 39.88 2.90
2163 3169 2.800541 CCCAGGAGCTGCGCTGATA 61.801 63.158 19.32 0.00 39.88 2.15
2167 3173 0.831288 AGGAGCTGCGCTGATATCCT 60.831 55.000 22.02 22.02 39.88 3.24
2169 3175 0.669932 GAGCTGCGCTGATATCCTGG 60.670 60.000 19.32 0.00 39.88 4.45
2171 3177 1.670406 CTGCGCTGATATCCTGGCC 60.670 63.158 9.73 0.00 0.00 5.36
2172 3178 2.387476 CTGCGCTGATATCCTGGCCA 62.387 60.000 9.73 4.71 0.00 5.36
2173 3179 1.002868 GCGCTGATATCCTGGCCAT 60.003 57.895 5.51 0.00 0.00 4.40
2175 3181 0.392193 CGCTGATATCCTGGCCATCC 60.392 60.000 5.51 0.00 0.00 3.51
2176 3182 0.990374 GCTGATATCCTGGCCATCCT 59.010 55.000 5.51 0.00 0.00 3.24
2224 5878 6.997239 TCAGAAATTCAGAATCATCCACTG 57.003 37.500 0.00 0.00 0.00 3.66
2230 5884 3.449918 TCAGAATCATCCACTGTACCCA 58.550 45.455 0.00 0.00 33.93 4.51
2241 5895 2.172483 CTGTACCCAAGCGACTGCCT 62.172 60.000 0.00 0.00 44.31 4.75
2258 5912 5.532557 ACTGCCTGTTTTCTGCTAATTTTC 58.467 37.500 0.00 0.00 0.00 2.29
2290 5944 1.064060 GCATAAGAATGGTGACGGTGC 59.936 52.381 0.00 0.00 33.38 5.01
2292 5946 2.093306 TAAGAATGGTGACGGTGCAG 57.907 50.000 0.00 0.00 0.00 4.41
2302 5956 3.214123 CGGTGCAGCCCATCATGG 61.214 66.667 10.90 0.00 37.25 3.66
2303 5957 2.043652 GGTGCAGCCCATCATGGT 60.044 61.111 4.03 0.00 35.17 3.55
2304 5958 1.683365 GGTGCAGCCCATCATGGTT 60.683 57.895 4.03 0.00 35.17 3.67
2305 5959 1.514087 GTGCAGCCCATCATGGTTG 59.486 57.895 2.07 1.90 39.41 3.77
2307 5961 4.349682 CAGCCCATCATGGTTGCT 57.650 55.556 2.07 1.86 35.79 3.91
2308 5962 2.587080 CAGCCCATCATGGTTGCTT 58.413 52.632 4.75 0.00 33.62 3.91
2309 5963 0.174845 CAGCCCATCATGGTTGCTTG 59.825 55.000 4.75 0.00 33.62 4.01
2310 5964 0.974010 AGCCCATCATGGTTGCTTGG 60.974 55.000 2.07 0.00 32.23 3.61
2311 5965 1.259840 GCCCATCATGGTTGCTTGGT 61.260 55.000 2.07 0.00 35.17 3.67
2312 5966 0.533491 CCCATCATGGTTGCTTGGTG 59.467 55.000 2.07 0.00 35.17 4.17
2313 5967 0.108520 CCATCATGGTTGCTTGGTGC 60.109 55.000 0.00 0.00 35.89 5.01
2314 5968 0.892755 CATCATGGTTGCTTGGTGCT 59.107 50.000 0.00 0.00 43.37 4.40
2315 5969 1.274167 CATCATGGTTGCTTGGTGCTT 59.726 47.619 0.00 0.00 43.37 3.91
2316 5970 1.412079 TCATGGTTGCTTGGTGCTTT 58.588 45.000 0.00 0.00 43.37 3.51
2317 5971 1.068895 TCATGGTTGCTTGGTGCTTTG 59.931 47.619 0.00 0.00 43.37 2.77
2318 5972 1.122227 ATGGTTGCTTGGTGCTTTGT 58.878 45.000 0.00 0.00 43.37 2.83
2319 5973 0.175302 TGGTTGCTTGGTGCTTTGTG 59.825 50.000 0.00 0.00 43.37 3.33
2320 5974 0.530431 GGTTGCTTGGTGCTTTGTGG 60.530 55.000 0.00 0.00 43.37 4.17
2321 5975 0.459489 GTTGCTTGGTGCTTTGTGGA 59.541 50.000 0.00 0.00 43.37 4.02
2322 5976 0.459489 TTGCTTGGTGCTTTGTGGAC 59.541 50.000 0.00 0.00 43.37 4.02
2323 5977 1.008538 GCTTGGTGCTTTGTGGACG 60.009 57.895 0.00 0.00 37.93 4.79
2324 5978 1.724582 GCTTGGTGCTTTGTGGACGT 61.725 55.000 0.00 0.00 37.93 4.34
2325 5979 0.738389 CTTGGTGCTTTGTGGACGTT 59.262 50.000 0.00 0.00 37.93 3.99
2326 5980 0.736053 TTGGTGCTTTGTGGACGTTC 59.264 50.000 0.00 0.00 37.93 3.95
2327 5981 0.107410 TGGTGCTTTGTGGACGTTCT 60.107 50.000 0.00 0.00 37.93 3.01
2328 5982 0.307760 GGTGCTTTGTGGACGTTCTG 59.692 55.000 0.00 0.00 37.93 3.02
2353 6171 1.783284 TGCTTCGCAGTTGTAGTCTG 58.217 50.000 0.00 0.00 33.32 3.51
2366 6184 2.504175 TGTAGTCTGAACTATTGCCCCC 59.496 50.000 0.00 0.00 40.08 5.40
2368 6186 1.992557 AGTCTGAACTATTGCCCCCAA 59.007 47.619 0.00 0.00 32.59 4.12
2376 6194 6.019748 TGAACTATTGCCCCCAAAGAAATTA 58.980 36.000 0.00 0.00 34.05 1.40
2383 6201 3.291584 CCCCCAAAGAAATTAGAGGCTC 58.708 50.000 6.34 6.34 0.00 4.70
2409 6227 5.770162 CCCCCTGAATCCTGTAACAATAATC 59.230 44.000 0.00 0.00 0.00 1.75
2411 6229 6.263168 CCCCTGAATCCTGTAACAATAATCAC 59.737 42.308 0.00 0.00 0.00 3.06
2416 6234 7.339212 TGAATCCTGTAACAATAATCACCCAAG 59.661 37.037 0.00 0.00 0.00 3.61
2445 6263 7.001674 ACCCAAACAGAGTTATGTATTTGACA 58.998 34.615 0.00 0.00 43.97 3.58
2446 6264 7.504238 ACCCAAACAGAGTTATGTATTTGACAA 59.496 33.333 0.00 0.00 42.78 3.18
2447 6265 8.023128 CCCAAACAGAGTTATGTATTTGACAAG 58.977 37.037 0.00 0.00 42.78 3.16
2448 6266 8.567948 CCAAACAGAGTTATGTATTTGACAAGT 58.432 33.333 0.00 0.00 42.78 3.16
2449 6267 9.950680 CAAACAGAGTTATGTATTTGACAAGTT 57.049 29.630 0.00 0.00 42.78 2.66
2451 6269 8.902540 ACAGAGTTATGTATTTGACAAGTTCA 57.097 30.769 0.00 0.00 42.78 3.18
2452 6270 9.507329 ACAGAGTTATGTATTTGACAAGTTCAT 57.493 29.630 7.71 7.71 42.78 2.57
2453 6271 9.979270 CAGAGTTATGTATTTGACAAGTTCATC 57.021 33.333 6.16 0.00 42.78 2.92
2454 6272 9.950496 AGAGTTATGTATTTGACAAGTTCATCT 57.050 29.630 6.16 0.31 42.78 2.90
2456 6274 9.950496 AGTTATGTATTTGACAAGTTCATCTCT 57.050 29.630 6.16 4.56 42.78 3.10
2460 6278 9.950496 ATGTATTTGACAAGTTCATCTCTACTT 57.050 29.630 0.00 0.00 42.78 2.24
2465 6283 8.818141 TTGACAAGTTCATCTCTACTTAGTTG 57.182 34.615 0.00 0.00 33.49 3.16
2466 6284 6.868864 TGACAAGTTCATCTCTACTTAGTTGC 59.131 38.462 0.00 0.00 33.49 4.17
2467 6285 6.759272 ACAAGTTCATCTCTACTTAGTTGCA 58.241 36.000 0.00 0.00 33.49 4.08
2468 6286 7.217200 ACAAGTTCATCTCTACTTAGTTGCAA 58.783 34.615 0.00 0.00 33.49 4.08
2469 6287 7.386299 ACAAGTTCATCTCTACTTAGTTGCAAG 59.614 37.037 0.00 0.00 33.49 4.01
2470 6288 6.998802 AGTTCATCTCTACTTAGTTGCAAGT 58.001 36.000 12.28 12.28 41.56 3.16
2471 6289 7.445945 AGTTCATCTCTACTTAGTTGCAAGTT 58.554 34.615 12.95 0.00 39.45 2.66
2472 6290 7.934120 AGTTCATCTCTACTTAGTTGCAAGTTT 59.066 33.333 12.95 0.12 39.45 2.66
2473 6291 7.891183 TCATCTCTACTTAGTTGCAAGTTTC 57.109 36.000 12.95 0.00 39.45 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 7.979537 GCCCGTCTATTTGGAATTTTCTTAAAT 59.020 33.333 9.38 9.38 35.49 1.40
21 22 7.039644 TGCCCGTCTATTTGGAATTTTCTTAAA 60.040 33.333 0.00 0.00 0.00 1.52
22 23 6.434652 TGCCCGTCTATTTGGAATTTTCTTAA 59.565 34.615 0.00 0.00 0.00 1.85
23 24 5.946972 TGCCCGTCTATTTGGAATTTTCTTA 59.053 36.000 0.00 0.00 0.00 2.10
24 25 4.770010 TGCCCGTCTATTTGGAATTTTCTT 59.230 37.500 0.00 0.00 0.00 2.52
25 26 4.157840 GTGCCCGTCTATTTGGAATTTTCT 59.842 41.667 0.00 0.00 0.00 2.52
26 27 4.421058 GTGCCCGTCTATTTGGAATTTTC 58.579 43.478 0.00 0.00 0.00 2.29
27 28 3.119637 CGTGCCCGTCTATTTGGAATTTT 60.120 43.478 0.00 0.00 0.00 1.82
28 29 2.422127 CGTGCCCGTCTATTTGGAATTT 59.578 45.455 0.00 0.00 0.00 1.82
29 30 2.014128 CGTGCCCGTCTATTTGGAATT 58.986 47.619 0.00 0.00 0.00 2.17
30 31 1.663695 CGTGCCCGTCTATTTGGAAT 58.336 50.000 0.00 0.00 0.00 3.01
31 32 0.391927 CCGTGCCCGTCTATTTGGAA 60.392 55.000 0.00 0.00 0.00 3.53
32 33 1.219664 CCGTGCCCGTCTATTTGGA 59.780 57.895 0.00 0.00 0.00 3.53
33 34 2.469516 GCCGTGCCCGTCTATTTGG 61.470 63.158 0.00 0.00 0.00 3.28
34 35 1.302383 TTGCCGTGCCCGTCTATTTG 61.302 55.000 0.00 0.00 0.00 2.32
35 36 1.003112 TTGCCGTGCCCGTCTATTT 60.003 52.632 0.00 0.00 0.00 1.40
36 37 1.743995 GTTGCCGTGCCCGTCTATT 60.744 57.895 0.00 0.00 0.00 1.73
37 38 2.125269 GTTGCCGTGCCCGTCTAT 60.125 61.111 0.00 0.00 0.00 1.98
38 39 4.728102 CGTTGCCGTGCCCGTCTA 62.728 66.667 0.00 0.00 0.00 2.59
51 52 0.099259 ATCATTGATGGCACGCGTTG 59.901 50.000 10.22 6.68 0.00 4.10
52 53 0.378257 GATCATTGATGGCACGCGTT 59.622 50.000 10.22 0.00 0.00 4.84
53 54 0.462581 AGATCATTGATGGCACGCGT 60.463 50.000 5.58 5.58 0.00 6.01
54 55 1.458445 CTAGATCATTGATGGCACGCG 59.542 52.381 3.53 3.53 0.00 6.01
55 56 2.487934 ACTAGATCATTGATGGCACGC 58.512 47.619 3.32 0.00 0.00 5.34
56 57 4.813161 AGAAACTAGATCATTGATGGCACG 59.187 41.667 3.32 0.00 0.00 5.34
57 58 6.018098 CAGAGAAACTAGATCATTGATGGCAC 60.018 42.308 3.32 0.00 0.00 5.01
58 59 6.053650 CAGAGAAACTAGATCATTGATGGCA 58.946 40.000 3.32 0.00 0.00 4.92
59 60 6.286758 TCAGAGAAACTAGATCATTGATGGC 58.713 40.000 3.32 0.00 0.00 4.40
60 61 9.993454 TTATCAGAGAAACTAGATCATTGATGG 57.007 33.333 3.32 0.00 0.00 3.51
62 63 9.709495 GCTTATCAGAGAAACTAGATCATTGAT 57.291 33.333 0.00 0.00 0.00 2.57
63 64 8.922237 AGCTTATCAGAGAAACTAGATCATTGA 58.078 33.333 0.00 3.46 0.00 2.57
64 65 8.980610 CAGCTTATCAGAGAAACTAGATCATTG 58.019 37.037 0.00 0.00 0.00 2.82
65 66 8.922237 TCAGCTTATCAGAGAAACTAGATCATT 58.078 33.333 0.00 0.00 0.00 2.57
66 67 8.476064 TCAGCTTATCAGAGAAACTAGATCAT 57.524 34.615 0.00 0.00 0.00 2.45
67 68 7.888250 TCAGCTTATCAGAGAAACTAGATCA 57.112 36.000 0.00 0.00 0.00 2.92
179 180 3.823304 GCCCATTAAGCCCTTTATCTGAG 59.177 47.826 0.00 0.00 0.00 3.35
182 183 3.244887 GGCCCATTAAGCCCTTTATCT 57.755 47.619 0.00 0.00 45.16 1.98
263 269 2.551270 TGGATTGTCTTGGAGCTAGGT 58.449 47.619 0.00 0.00 0.00 3.08
295 301 4.792068 TGACATGACTGATAAAATCCCCC 58.208 43.478 0.00 0.00 0.00 5.40
497 503 6.808008 AAATCAGATTATATGGCTTGTCGG 57.192 37.500 0.00 0.00 0.00 4.79
673 680 5.439721 CCAACATAGATCCAGGTTTCATCA 58.560 41.667 0.00 0.00 0.00 3.07
693 700 3.088532 GGTCATCACTTTACATGCCCAA 58.911 45.455 0.00 0.00 0.00 4.12
867 877 7.000472 TCCCATTCCTTTCATAGATAGCTTTG 59.000 38.462 0.00 0.00 0.00 2.77
879 889 1.272592 TGCTGCATCCCATTCCTTTCA 60.273 47.619 0.00 0.00 0.00 2.69
986 996 4.080863 AGGTCTTCATGATGTCTGGTTACC 60.081 45.833 8.33 0.00 0.00 2.85
987 997 5.091261 AGGTCTTCATGATGTCTGGTTAC 57.909 43.478 8.33 0.00 0.00 2.50
1018 1028 1.270907 GCAAGGGTGAGGAGAGAGAA 58.729 55.000 0.00 0.00 0.00 2.87
1021 1031 0.178921 ACTGCAAGGGTGAGGAGAGA 60.179 55.000 0.00 0.00 39.30 3.10
1035 1045 1.155889 CAACAGCATCGGTAACTGCA 58.844 50.000 0.00 0.00 40.88 4.41
1038 1048 1.635663 GCGCAACAGCATCGGTAACT 61.636 55.000 0.30 0.00 37.05 2.24
1040 1050 1.634757 CTGCGCAACAGCATCGGTAA 61.635 55.000 13.05 0.00 46.97 2.85
1041 1051 2.047750 TGCGCAACAGCATCGGTA 60.048 55.556 8.16 0.00 42.92 4.02
1060 1070 1.948145 CTGGCTACGGGTAGTGTCTAG 59.052 57.143 7.61 0.00 35.65 2.43
1062 1072 0.039326 ACTGGCTACGGGTAGTGTCT 59.961 55.000 7.61 0.00 35.65 3.41
1076 1086 1.198637 GACAATGTTCAGAGCACTGGC 59.801 52.381 11.42 5.62 43.60 4.85
1081 1091 2.148768 CTGCTGACAATGTTCAGAGCA 58.851 47.619 14.07 11.52 45.19 4.26
1086 1096 0.594602 GCTGCTGCTGACAATGTTCA 59.405 50.000 10.92 0.00 36.03 3.18
1089 1099 0.313043 GTTGCTGCTGCTGACAATGT 59.687 50.000 17.00 0.00 40.48 2.71
1092 1102 0.101040 GTTGTTGCTGCTGCTGACAA 59.899 50.000 23.46 23.46 40.61 3.18
1127 1137 0.107017 ACATGGGTACATCTGCTGCC 60.107 55.000 0.00 0.00 34.35 4.85
1150 1160 2.238245 CACTCGTGCTGCAGAAATTC 57.762 50.000 20.43 0.00 0.00 2.17
1165 1175 0.531532 AGTGTCACTGTGCTGCACTC 60.532 55.000 30.43 16.55 35.78 3.51
1167 1177 1.645455 CAGTGTCACTGTGCTGCAC 59.355 57.895 25.15 25.15 41.19 4.57
1194 1204 1.024579 GTTGCCACATACGGGACTGG 61.025 60.000 0.00 0.00 0.00 4.00
1200 1210 1.665679 CTGCTAAGTTGCCACATACGG 59.334 52.381 0.00 0.00 0.00 4.02
1221 1231 2.481568 CTGGTGTCGCATTATATGGCAG 59.518 50.000 0.00 0.00 0.00 4.85
1260 1270 0.904865 TGAACTGCTCCGGGATCTGT 60.905 55.000 0.00 0.16 0.00 3.41
1269 1279 1.673665 CTGGCACCTGAACTGCTCC 60.674 63.158 0.00 0.00 34.84 4.70
1296 1306 1.111277 TGATAGCTTGAGCCACGCTA 58.889 50.000 13.17 13.17 43.38 4.26
1298 1308 0.585357 CATGATAGCTTGAGCCACGC 59.415 55.000 0.00 0.00 43.38 5.34
1345 1385 2.799412 GCGACATCCTCATGATCTCAAC 59.201 50.000 0.00 0.00 33.72 3.18
1373 1413 2.324330 TTGCACATCGACGGCAAGG 61.324 57.895 14.09 0.00 42.12 3.61
1391 1431 1.518302 TATGCCGGCACATACACGT 59.482 52.632 35.50 16.50 0.00 4.49
1430 1471 3.592814 CGCTGCATCTGGCCATGG 61.593 66.667 5.51 7.63 43.89 3.66
1431 1472 3.592814 CCGCTGCATCTGGCCATG 61.593 66.667 5.51 3.25 43.89 3.66
1443 1484 2.124983 CAGACCCATCCACCGCTG 60.125 66.667 0.00 0.00 0.00 5.18
1464 1505 2.185004 ACTGCCACCACTACATTGAC 57.815 50.000 0.00 0.00 0.00 3.18
1482 1523 2.294074 TCATGCCGGGCACTTTTATAC 58.706 47.619 26.48 0.00 43.04 1.47
1483 1524 2.719531 TCATGCCGGGCACTTTTATA 57.280 45.000 26.48 0.00 43.04 0.98
1520 1561 4.575885 TCCAAGTTGCAACTAGTACATCC 58.424 43.478 31.31 0.00 38.57 3.51
1521 1562 6.554334 TTTCCAAGTTGCAACTAGTACATC 57.446 37.500 31.31 0.78 38.57 3.06
1522 1563 8.512138 GTTATTTCCAAGTTGCAACTAGTACAT 58.488 33.333 31.31 21.26 38.57 2.29
1611 1652 3.345508 AATTTGGGACGGAGGAAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
1613 1654 2.910977 AGTAATTTGGGACGGAGGAAGT 59.089 45.455 0.00 0.00 0.00 3.01
1614 1655 3.629142 AGTAATTTGGGACGGAGGAAG 57.371 47.619 0.00 0.00 0.00 3.46
1615 1656 3.073356 ACAAGTAATTTGGGACGGAGGAA 59.927 43.478 0.00 0.00 41.25 3.36
1616 1657 2.640826 ACAAGTAATTTGGGACGGAGGA 59.359 45.455 0.00 0.00 41.25 3.71
1617 1658 3.007635 GACAAGTAATTTGGGACGGAGG 58.992 50.000 0.00 0.00 41.25 4.30
1618 1659 2.671396 CGACAAGTAATTTGGGACGGAG 59.329 50.000 0.00 0.00 41.25 4.63
1619 1660 2.690786 CGACAAGTAATTTGGGACGGA 58.309 47.619 0.00 0.00 41.25 4.69
1620 1661 1.129811 GCGACAAGTAATTTGGGACGG 59.870 52.381 0.00 0.00 41.25 4.79
1621 1662 1.801771 TGCGACAAGTAATTTGGGACG 59.198 47.619 0.00 0.00 41.25 4.79
1622 1663 3.071479 TCTGCGACAAGTAATTTGGGAC 58.929 45.455 0.00 0.00 41.25 4.46
1623 1664 3.410631 TCTGCGACAAGTAATTTGGGA 57.589 42.857 0.00 0.00 41.25 4.37
1624 1665 4.497473 TTTCTGCGACAAGTAATTTGGG 57.503 40.909 0.00 0.00 41.25 4.12
1625 1666 4.858692 CCATTTCTGCGACAAGTAATTTGG 59.141 41.667 0.00 0.00 41.25 3.28
1626 1667 5.698832 TCCATTTCTGCGACAAGTAATTTG 58.301 37.500 0.00 0.00 42.68 2.32
1627 1668 5.957842 TCCATTTCTGCGACAAGTAATTT 57.042 34.783 0.00 0.00 0.00 1.82
1628 1669 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
1629 1670 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
1630 1671 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
1631 1672 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
1632 1673 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
1633 1674 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
1634 1675 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
1635 1676 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
1636 1677 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
1637 1678 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
1638 1679 6.219473 AGTTCTAGATACATCCATTTCTGCG 58.781 40.000 0.00 0.00 0.00 5.18
1639 1680 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
1666 1707 8.409371 CGCAAGTATGGATGTATCTAGATGTAT 58.591 37.037 15.79 9.11 0.00 2.29
1667 1708 7.610305 TCGCAAGTATGGATGTATCTAGATGTA 59.390 37.037 15.79 4.44 39.48 2.29
1668 1709 6.434340 TCGCAAGTATGGATGTATCTAGATGT 59.566 38.462 15.79 1.25 39.48 3.06
1669 1710 6.749578 GTCGCAAGTATGGATGTATCTAGATG 59.250 42.308 15.79 0.00 39.48 2.90
1670 1711 6.434340 TGTCGCAAGTATGGATGTATCTAGAT 59.566 38.462 10.73 10.73 39.48 1.98
1671 1712 5.768164 TGTCGCAAGTATGGATGTATCTAGA 59.232 40.000 0.00 0.00 39.48 2.43
1672 1713 6.013842 TGTCGCAAGTATGGATGTATCTAG 57.986 41.667 0.00 0.00 39.48 2.43
1673 1714 6.040504 ACTTGTCGCAAGTATGGATGTATCTA 59.959 38.462 19.21 0.00 39.48 1.98
1674 1715 4.937201 TGTCGCAAGTATGGATGTATCT 57.063 40.909 0.00 0.00 39.48 1.98
1675 1716 5.050490 ACTTGTCGCAAGTATGGATGTATC 58.950 41.667 19.21 0.00 39.48 2.24
1676 1717 5.023533 ACTTGTCGCAAGTATGGATGTAT 57.976 39.130 19.21 0.00 39.48 2.29
1677 1718 4.465632 ACTTGTCGCAAGTATGGATGTA 57.534 40.909 19.21 0.00 39.48 2.29
1678 1719 3.334583 ACTTGTCGCAAGTATGGATGT 57.665 42.857 19.21 0.00 39.48 3.06
1679 1720 5.991328 ATTACTTGTCGCAAGTATGGATG 57.009 39.130 23.59 2.90 33.27 3.51
1680 1721 6.183360 CCAAATTACTTGTCGCAAGTATGGAT 60.183 38.462 26.28 18.05 34.60 3.41
1681 1722 5.123186 CCAAATTACTTGTCGCAAGTATGGA 59.877 40.000 26.28 17.13 34.60 3.41
1682 1723 5.123186 TCCAAATTACTTGTCGCAAGTATGG 59.877 40.000 25.46 25.46 34.26 2.74
1683 1724 6.176975 TCCAAATTACTTGTCGCAAGTATG 57.823 37.500 23.59 19.73 33.27 2.39
1684 1725 6.608610 GTTCCAAATTACTTGTCGCAAGTAT 58.391 36.000 23.59 13.19 33.27 2.12
1685 1726 5.333492 CGTTCCAAATTACTTGTCGCAAGTA 60.333 40.000 20.95 20.95 32.65 2.24
1686 1727 4.553938 CGTTCCAAATTACTTGTCGCAAGT 60.554 41.667 22.53 22.53 32.65 3.16
1687 1728 3.906008 CGTTCCAAATTACTTGTCGCAAG 59.094 43.478 15.16 15.16 32.65 4.01
1688 1729 3.304123 CCGTTCCAAATTACTTGTCGCAA 60.304 43.478 0.00 0.00 32.65 4.85
1689 1730 2.224549 CCGTTCCAAATTACTTGTCGCA 59.775 45.455 0.00 0.00 32.65 5.10
1690 1731 2.481185 TCCGTTCCAAATTACTTGTCGC 59.519 45.455 0.00 0.00 32.65 5.19
1691 1732 3.124636 CCTCCGTTCCAAATTACTTGTCG 59.875 47.826 0.00 0.00 32.65 4.35
1692 1733 3.439129 CCCTCCGTTCCAAATTACTTGTC 59.561 47.826 0.00 0.00 32.65 3.18
1693 1734 3.073356 TCCCTCCGTTCCAAATTACTTGT 59.927 43.478 0.00 0.00 32.65 3.16
1694 1735 3.681593 TCCCTCCGTTCCAAATTACTTG 58.318 45.455 0.00 0.00 34.52 3.16
1695 1736 3.329814 ACTCCCTCCGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
1696 1737 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
1697 1738 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
1698 1739 4.355549 TCTACTCCCTCCGTTCCAAATTA 58.644 43.478 0.00 0.00 0.00 1.40
1699 1740 3.178865 TCTACTCCCTCCGTTCCAAATT 58.821 45.455 0.00 0.00 0.00 1.82
1700 1741 2.829023 TCTACTCCCTCCGTTCCAAAT 58.171 47.619 0.00 0.00 0.00 2.32
1701 1742 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
1702 1743 2.108168 CATCTACTCCCTCCGTTCCAA 58.892 52.381 0.00 0.00 0.00 3.53
1703 1744 1.286849 TCATCTACTCCCTCCGTTCCA 59.713 52.381 0.00 0.00 0.00 3.53
1704 1745 2.068834 TCATCTACTCCCTCCGTTCC 57.931 55.000 0.00 0.00 0.00 3.62
1705 1746 4.342665 AGATTTCATCTACTCCCTCCGTTC 59.657 45.833 0.00 0.00 38.00 3.95
1706 1747 4.290942 AGATTTCATCTACTCCCTCCGTT 58.709 43.478 0.00 0.00 38.00 4.44
1707 1748 3.917300 AGATTTCATCTACTCCCTCCGT 58.083 45.455 0.00 0.00 38.00 4.69
1708 1749 5.770663 TCTTAGATTTCATCTACTCCCTCCG 59.229 44.000 0.00 0.00 41.33 4.63
1709 1750 7.610865 CATCTTAGATTTCATCTACTCCCTCC 58.389 42.308 0.00 0.00 41.33 4.30
1710 1751 7.096551 GCATCTTAGATTTCATCTACTCCCTC 58.903 42.308 0.00 0.00 41.33 4.30
1711 1752 6.556495 TGCATCTTAGATTTCATCTACTCCCT 59.444 38.462 0.00 0.00 41.33 4.20
1712 1753 6.763355 TGCATCTTAGATTTCATCTACTCCC 58.237 40.000 0.00 0.00 41.33 4.30
1713 1754 8.313292 AGATGCATCTTAGATTTCATCTACTCC 58.687 37.037 23.75 7.23 41.33 3.85
1714 1755 9.142515 CAGATGCATCTTAGATTTCATCTACTC 57.857 37.037 26.70 8.79 41.33 2.59
1715 1756 8.868103 TCAGATGCATCTTAGATTTCATCTACT 58.132 33.333 26.70 10.27 41.33 2.57
1716 1757 8.924691 GTCAGATGCATCTTAGATTTCATCTAC 58.075 37.037 26.70 19.63 41.33 2.59
1733 1774 0.950555 GTTCAGTGCGGTCAGATGCA 60.951 55.000 0.00 0.00 39.13 3.96
1743 1784 0.389296 TACGGTGATGGTTCAGTGCG 60.389 55.000 0.00 0.00 30.85 5.34
1745 1786 2.066262 GTGTACGGTGATGGTTCAGTG 58.934 52.381 0.00 0.00 30.85 3.66
1750 1791 2.895404 AGTACAGTGTACGGTGATGGTT 59.105 45.455 24.13 4.28 0.00 3.67
1758 1799 3.488721 GGCATACAGAGTACAGTGTACGG 60.489 52.174 24.13 19.77 32.05 4.02
1760 1801 4.641094 AGAGGCATACAGAGTACAGTGTAC 59.359 45.833 23.31 23.31 32.05 2.90
1764 1805 4.090090 ACAAGAGGCATACAGAGTACAGT 58.910 43.478 0.00 0.00 0.00 3.55
1769 1810 5.683876 ACATAACAAGAGGCATACAGAGT 57.316 39.130 0.00 0.00 0.00 3.24
1771 1812 7.335924 GGTTTAACATAACAAGAGGCATACAGA 59.664 37.037 0.00 0.00 0.00 3.41
1772 1813 7.120579 TGGTTTAACATAACAAGAGGCATACAG 59.879 37.037 0.00 0.00 0.00 2.74
1773 1814 6.943146 TGGTTTAACATAACAAGAGGCATACA 59.057 34.615 0.00 0.00 0.00 2.29
1774 1815 7.385778 TGGTTTAACATAACAAGAGGCATAC 57.614 36.000 0.00 0.00 0.00 2.39
1775 1816 8.410673 TTTGGTTTAACATAACAAGAGGCATA 57.589 30.769 0.00 0.00 0.00 3.14
1776 1817 6.909550 TTGGTTTAACATAACAAGAGGCAT 57.090 33.333 0.00 0.00 0.00 4.40
1777 1818 6.716934 TTTGGTTTAACATAACAAGAGGCA 57.283 33.333 0.00 0.00 0.00 4.75
1778 1819 7.709182 ACTTTTTGGTTTAACATAACAAGAGGC 59.291 33.333 13.24 0.00 0.00 4.70
1779 1820 9.594478 AACTTTTTGGTTTAACATAACAAGAGG 57.406 29.630 13.24 2.13 0.00 3.69
1783 1824 9.706691 TGTGAACTTTTTGGTTTAACATAACAA 57.293 25.926 0.00 0.00 0.00 2.83
1784 1825 9.360093 CTGTGAACTTTTTGGTTTAACATAACA 57.640 29.630 0.00 0.00 31.03 2.41
1785 1826 8.325282 GCTGTGAACTTTTTGGTTTAACATAAC 58.675 33.333 0.00 0.00 31.03 1.89
1786 1827 8.035394 TGCTGTGAACTTTTTGGTTTAACATAA 58.965 29.630 0.00 0.00 31.03 1.90
1787 1828 7.548097 TGCTGTGAACTTTTTGGTTTAACATA 58.452 30.769 0.00 0.00 31.03 2.29
1788 1829 6.402222 TGCTGTGAACTTTTTGGTTTAACAT 58.598 32.000 0.00 0.00 31.03 2.71
1789 1830 5.784177 TGCTGTGAACTTTTTGGTTTAACA 58.216 33.333 0.00 0.00 0.00 2.41
1790 1831 6.533367 TCATGCTGTGAACTTTTTGGTTTAAC 59.467 34.615 0.00 0.00 32.78 2.01
1791 1832 6.634805 TCATGCTGTGAACTTTTTGGTTTAA 58.365 32.000 0.00 0.00 32.78 1.52
1792 1833 6.214191 TCATGCTGTGAACTTTTTGGTTTA 57.786 33.333 0.00 0.00 32.78 2.01
1793 1834 5.083533 TCATGCTGTGAACTTTTTGGTTT 57.916 34.783 0.00 0.00 32.78 3.27
1794 1835 4.734398 TCATGCTGTGAACTTTTTGGTT 57.266 36.364 0.00 0.00 32.78 3.67
1795 1836 4.402155 TCTTCATGCTGTGAACTTTTTGGT 59.598 37.500 1.67 0.00 41.79 3.67
1796 1837 4.935702 TCTTCATGCTGTGAACTTTTTGG 58.064 39.130 1.67 0.00 41.79 3.28
1797 1838 4.980434 CCTCTTCATGCTGTGAACTTTTTG 59.020 41.667 1.67 0.00 41.79 2.44
1798 1839 4.038402 CCCTCTTCATGCTGTGAACTTTTT 59.962 41.667 1.67 0.00 41.79 1.94
1806 1847 1.554160 ACTCTCCCTCTTCATGCTGTG 59.446 52.381 0.00 0.00 0.00 3.66
1815 1856 7.358263 TCTTCTTCATATGTACTCTCCCTCTT 58.642 38.462 1.90 0.00 0.00 2.85
1820 1861 7.040686 GGTCTCTCTTCTTCATATGTACTCTCC 60.041 44.444 1.90 0.00 0.00 3.71
1826 1867 8.001292 TGATCTGGTCTCTCTTCTTCATATGTA 58.999 37.037 1.90 0.00 0.00 2.29
1827 1868 6.838090 TGATCTGGTCTCTCTTCTTCATATGT 59.162 38.462 1.90 0.00 0.00 2.29
1828 1869 7.287512 TGATCTGGTCTCTCTTCTTCATATG 57.712 40.000 0.00 0.00 0.00 1.78
1830 1871 6.323482 CCTTGATCTGGTCTCTCTTCTTCATA 59.677 42.308 0.00 0.00 0.00 2.15
1856 2805 6.398234 AAGCTCGTTCATGTCAGTATATCT 57.602 37.500 0.00 0.00 0.00 1.98
1864 2813 3.333804 TGCATAAAGCTCGTTCATGTCA 58.666 40.909 0.00 0.00 45.94 3.58
1865 2814 4.340894 TTGCATAAAGCTCGTTCATGTC 57.659 40.909 0.00 0.00 45.94 3.06
1883 2832 6.864165 TGGTATCAAATCCGTTAACTTTTTGC 59.136 34.615 14.77 6.56 0.00 3.68
1890 2839 7.636326 CCAATACTGGTATCAAATCCGTTAAC 58.364 38.462 0.00 0.00 38.00 2.01
1906 2855 2.439507 AGTCTGGGTATGCCAATACTGG 59.560 50.000 1.04 0.00 46.65 4.00
1910 2859 5.450818 AAAGAAGTCTGGGTATGCCAATA 57.549 39.130 1.04 0.00 36.17 1.90
1934 2884 9.747898 ATTGGTTCAGGTTTATCATTTGTACTA 57.252 29.630 0.00 0.00 0.00 1.82
1960 2910 9.267084 TCGTAGCATTTAATTGATTGTAGCATA 57.733 29.630 1.55 0.00 0.00 3.14
1981 2932 8.744011 CCGTTTCTCAATAAATTAGACTCGTAG 58.256 37.037 0.00 0.00 0.00 3.51
1985 2936 9.152595 ACTTCCGTTTCTCAATAAATTAGACTC 57.847 33.333 0.00 0.00 0.00 3.36
1986 2937 8.936864 CACTTCCGTTTCTCAATAAATTAGACT 58.063 33.333 0.00 0.00 0.00 3.24
1987 2938 8.175716 CCACTTCCGTTTCTCAATAAATTAGAC 58.824 37.037 0.00 0.00 0.00 2.59
1988 2939 7.148306 GCCACTTCCGTTTCTCAATAAATTAGA 60.148 37.037 0.00 0.00 0.00 2.10
1995 2952 3.334691 CTGCCACTTCCGTTTCTCAATA 58.665 45.455 0.00 0.00 0.00 1.90
2011 2968 2.434331 GCACACCCTTACCTGCCA 59.566 61.111 0.00 0.00 0.00 4.92
2013 2970 1.741770 CTCGCACACCCTTACCTGC 60.742 63.158 0.00 0.00 0.00 4.85
2028 2985 2.219847 CATCAGGTATGCACGCTCG 58.780 57.895 0.00 0.00 0.00 5.03
2036 2993 2.225019 GCAAATCTCGGCATCAGGTATG 59.775 50.000 0.00 0.00 38.74 2.39
2038 2995 1.486310 AGCAAATCTCGGCATCAGGTA 59.514 47.619 0.00 0.00 0.00 3.08
2040 2997 0.661552 CAGCAAATCTCGGCATCAGG 59.338 55.000 0.00 0.00 0.00 3.86
2041 2998 0.661552 CCAGCAAATCTCGGCATCAG 59.338 55.000 0.00 0.00 0.00 2.90
2042 2999 0.035152 ACCAGCAAATCTCGGCATCA 60.035 50.000 0.00 0.00 0.00 3.07
2043 3000 0.379669 CACCAGCAAATCTCGGCATC 59.620 55.000 0.00 0.00 0.00 3.91
2044 3001 1.660560 GCACCAGCAAATCTCGGCAT 61.661 55.000 0.00 0.00 41.58 4.40
2045 3002 2.334946 GCACCAGCAAATCTCGGCA 61.335 57.895 0.00 0.00 41.58 5.69
2046 3003 2.486966 GCACCAGCAAATCTCGGC 59.513 61.111 0.00 0.00 41.58 5.54
2048 3005 2.753966 CCGGCACCAGCAAATCTCG 61.754 63.158 0.00 0.00 44.61 4.04
2049 3006 1.675641 ACCGGCACCAGCAAATCTC 60.676 57.895 0.00 0.00 44.61 2.75
2052 3009 2.990967 CCACCGGCACCAGCAAAT 60.991 61.111 0.00 0.00 44.61 2.32
2099 3056 2.509336 GTGTGTCGATGGCCGGAG 60.509 66.667 5.05 0.00 39.14 4.63
2100 3057 3.307108 TGTGTGTCGATGGCCGGA 61.307 61.111 5.05 0.00 39.14 5.14
2102 3059 2.356913 TGTGTGTGTCGATGGCCG 60.357 61.111 0.00 0.00 40.25 6.13
2104 3061 2.667318 CCGTGTGTGTGTCGATGGC 61.667 63.158 0.00 0.00 0.00 4.40
2105 3062 1.282248 GACCGTGTGTGTGTCGATGG 61.282 60.000 0.00 0.00 0.00 3.51
2106 3063 1.282248 GGACCGTGTGTGTGTCGATG 61.282 60.000 0.00 0.00 0.00 3.84
2107 3064 1.006571 GGACCGTGTGTGTGTCGAT 60.007 57.895 0.00 0.00 0.00 3.59
2108 3065 1.740332 ATGGACCGTGTGTGTGTCGA 61.740 55.000 0.00 0.00 0.00 4.20
2109 3066 1.282248 GATGGACCGTGTGTGTGTCG 61.282 60.000 0.00 0.00 0.00 4.35
2110 3067 0.033504 AGATGGACCGTGTGTGTGTC 59.966 55.000 0.00 0.00 0.00 3.67
2112 3069 1.272490 AGTAGATGGACCGTGTGTGTG 59.728 52.381 0.00 0.00 0.00 3.82
2113 3070 1.272490 CAGTAGATGGACCGTGTGTGT 59.728 52.381 0.00 0.00 0.00 3.72
2114 3071 1.996292 CAGTAGATGGACCGTGTGTG 58.004 55.000 0.00 0.00 0.00 3.82
2126 3083 1.762460 CTCGGGGCCACCAGTAGAT 60.762 63.158 4.39 0.00 40.22 1.98
2156 3162 0.392193 GGATGGCCAGGATATCAGCG 60.392 60.000 13.05 0.00 0.00 5.18
2162 3168 2.278245 CCCAATAGGATGGCCAGGATA 58.722 52.381 13.05 3.58 39.26 2.59
2163 3169 1.078955 CCCAATAGGATGGCCAGGAT 58.921 55.000 13.05 0.93 39.26 3.24
2167 3173 1.929494 AGAAACCCAATAGGATGGCCA 59.071 47.619 8.56 8.56 39.26 5.36
2169 3175 4.137543 CAGTAGAAACCCAATAGGATGGC 58.862 47.826 0.00 0.00 39.26 4.40
2171 3177 5.745227 ACACAGTAGAAACCCAATAGGATG 58.255 41.667 0.00 0.00 39.89 3.51
2172 3178 6.012858 TCAACACAGTAGAAACCCAATAGGAT 60.013 38.462 0.00 0.00 39.89 3.24
2173 3179 5.308497 TCAACACAGTAGAAACCCAATAGGA 59.692 40.000 0.00 0.00 39.89 2.94
2175 3181 5.122396 GCTCAACACAGTAGAAACCCAATAG 59.878 44.000 0.00 0.00 0.00 1.73
2176 3182 5.001232 GCTCAACACAGTAGAAACCCAATA 58.999 41.667 0.00 0.00 0.00 1.90
2224 5878 1.741770 CAGGCAGTCGCTTGGGTAC 60.742 63.158 0.00 0.00 41.36 3.34
2230 5884 0.947244 CAGAAAACAGGCAGTCGCTT 59.053 50.000 0.00 0.00 38.60 4.68
2241 5895 4.518970 AGAGCCGAAAATTAGCAGAAAACA 59.481 37.500 0.00 0.00 0.00 2.83
2290 5944 0.174845 CAAGCAACCATGATGGGCTG 59.825 55.000 17.04 13.30 43.37 4.85
2292 5946 1.259840 ACCAAGCAACCATGATGGGC 61.260 55.000 17.04 10.47 39.88 5.36
2305 5959 1.008538 CGTCCACAAAGCACCAAGC 60.009 57.895 0.00 0.00 46.19 4.01
2306 5960 0.738389 AACGTCCACAAAGCACCAAG 59.262 50.000 0.00 0.00 0.00 3.61
2307 5961 0.736053 GAACGTCCACAAAGCACCAA 59.264 50.000 0.00 0.00 0.00 3.67
2308 5962 0.107410 AGAACGTCCACAAAGCACCA 60.107 50.000 0.00 0.00 0.00 4.17
2309 5963 0.307760 CAGAACGTCCACAAAGCACC 59.692 55.000 0.00 0.00 0.00 5.01
2310 5964 1.014352 ACAGAACGTCCACAAAGCAC 58.986 50.000 0.00 0.00 0.00 4.40
2311 5965 1.745232 AACAGAACGTCCACAAAGCA 58.255 45.000 0.00 0.00 0.00 3.91
2312 5966 2.844122 AAACAGAACGTCCACAAAGC 57.156 45.000 0.00 0.00 0.00 3.51
2339 6157 4.201628 GCAATAGTTCAGACTACAACTGCG 60.202 45.833 8.60 0.00 40.98 5.18
2353 6171 5.420725 AATTTCTTTGGGGGCAATAGTTC 57.579 39.130 0.00 0.00 0.00 3.01
2366 6184 3.291584 GGGGGAGCCTCTAATTTCTTTG 58.708 50.000 0.00 0.00 0.00 2.77
2390 6208 6.726379 TGGGTGATTATTGTTACAGGATTCA 58.274 36.000 0.00 0.00 0.00 2.57
2409 6227 2.763448 TCTGTTTGGGTTTTCTTGGGTG 59.237 45.455 0.00 0.00 0.00 4.61
2411 6229 3.031013 ACTCTGTTTGGGTTTTCTTGGG 58.969 45.455 0.00 0.00 0.00 4.12
2416 6234 9.191995 CAAATACATAACTCTGTTTGGGTTTTC 57.808 33.333 0.00 0.00 0.00 2.29
2445 6263 7.445945 ACTTGCAACTAAGTAGAGATGAACTT 58.554 34.615 0.00 0.00 39.03 2.66
2446 6264 6.998802 ACTTGCAACTAAGTAGAGATGAACT 58.001 36.000 0.00 0.00 39.03 3.01
2447 6265 7.659652 AACTTGCAACTAAGTAGAGATGAAC 57.340 36.000 0.00 0.00 39.86 3.18
2448 6266 8.311650 GAAACTTGCAACTAAGTAGAGATGAA 57.688 34.615 0.00 0.00 39.86 2.57
2449 6267 7.891183 GAAACTTGCAACTAAGTAGAGATGA 57.109 36.000 0.00 0.00 39.86 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.