Multiple sequence alignment - TraesCS7A01G034800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G034800 chr7A 100.000 3098 0 0 1 3098 15285514 15282417 0.000000e+00 5722
1 TraesCS7A01G034800 chr7A 81.382 1418 227 23 703 2105 16315559 16316954 0.000000e+00 1122
2 TraesCS7A01G034800 chr7A 80.935 1390 235 16 726 2101 16427682 16429055 0.000000e+00 1072
3 TraesCS7A01G034800 chr7D 98.238 2611 43 3 1 2610 16384335 16381727 0.000000e+00 4564
4 TraesCS7A01G034800 chr7D 93.220 2655 107 24 1 2610 26391937 26389311 0.000000e+00 3838
5 TraesCS7A01G034800 chr7D 81.427 1416 235 14 703 2105 17122608 17124008 0.000000e+00 1133
6 TraesCS7A01G034800 chr7D 81.321 1408 233 16 712 2105 16760003 16758612 0.000000e+00 1116
7 TraesCS7A01G034800 chr7D 97.380 229 5 1 2870 3098 16381728 16381501 3.750000e-104 388
8 TraesCS7A01G034800 chr7D 92.308 195 15 0 2870 3064 26389312 26389118 8.460000e-71 278
9 TraesCS7A01G034800 chr4A 94.080 2652 114 19 1 2610 718422163 718424813 0.000000e+00 3988
10 TraesCS7A01G034800 chr4A 86.300 2146 239 36 1 2130 718938209 718936103 0.000000e+00 2283
11 TraesCS7A01G034800 chr4A 81.299 1417 235 16 703 2105 717259800 717258400 0.000000e+00 1122
12 TraesCS7A01G034800 chr4A 83.245 376 38 13 2162 2514 718936099 718935726 3.850000e-84 322
13 TraesCS7A01G034800 chr4A 91.026 78 7 0 2533 2610 718906492 718906415 4.230000e-19 106
14 TraesCS7A01G034800 chr4D 97.026 269 8 0 2606 2874 20999996 20999728 1.310000e-123 453
15 TraesCS7A01G034800 chr4D 96.604 265 9 0 2609 2873 15611425 15611689 1.020000e-119 440
16 TraesCS7A01G034800 chr4B 97.358 265 6 1 2608 2872 555842194 555841931 1.690000e-122 449
17 TraesCS7A01G034800 chr4B 96.981 265 8 0 2608 2872 561247814 561248078 2.190000e-121 446
18 TraesCS7A01G034800 chr3A 96.296 270 10 0 2606 2875 214725933 214725664 7.880000e-121 444
19 TraesCS7A01G034800 chr3D 96.269 268 10 0 2605 2872 303360304 303360571 1.020000e-119 440
20 TraesCS7A01G034800 chr2B 96.604 265 9 0 2608 2872 280239074 280239338 1.020000e-119 440
21 TraesCS7A01G034800 chr2D 94.982 279 13 1 2599 2876 8271573 8271295 1.320000e-118 436
22 TraesCS7A01G034800 chr2A 95.572 271 12 0 2602 2872 764967166 764967436 4.740000e-118 435


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G034800 chr7A 15282417 15285514 3097 True 5722.0 5722 100.0000 1 3098 1 chr7A.!!$R1 3097
1 TraesCS7A01G034800 chr7A 16315559 16316954 1395 False 1122.0 1122 81.3820 703 2105 1 chr7A.!!$F1 1402
2 TraesCS7A01G034800 chr7A 16427682 16429055 1373 False 1072.0 1072 80.9350 726 2101 1 chr7A.!!$F2 1375
3 TraesCS7A01G034800 chr7D 16381501 16384335 2834 True 2476.0 4564 97.8090 1 3098 2 chr7D.!!$R2 3097
4 TraesCS7A01G034800 chr7D 26389118 26391937 2819 True 2058.0 3838 92.7640 1 3064 2 chr7D.!!$R3 3063
5 TraesCS7A01G034800 chr7D 17122608 17124008 1400 False 1133.0 1133 81.4270 703 2105 1 chr7D.!!$F1 1402
6 TraesCS7A01G034800 chr7D 16758612 16760003 1391 True 1116.0 1116 81.3210 712 2105 1 chr7D.!!$R1 1393
7 TraesCS7A01G034800 chr4A 718422163 718424813 2650 False 3988.0 3988 94.0800 1 2610 1 chr4A.!!$F1 2609
8 TraesCS7A01G034800 chr4A 718935726 718938209 2483 True 1302.5 2283 84.7725 1 2514 2 chr4A.!!$R3 2513
9 TraesCS7A01G034800 chr4A 717258400 717259800 1400 True 1122.0 1122 81.2990 703 2105 1 chr4A.!!$R1 1402

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 200 0.322187 GACCGCACTAAACCACCCAT 60.322 55.000 0.00 0.0 0.00 4.00 F
533 538 1.079127 GAAGGTAGCTGAGGCGCAA 60.079 57.895 10.83 0.0 44.37 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1022 1058 0.034756 CGTGGTGGTGTTGGAGATCA 59.965 55.0 0.0 0.0 0.0 2.92 R
2168 2204 0.525668 CGACACAGCATCTACCCGTC 60.526 60.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
198 200 0.322187 GACCGCACTAAACCACCCAT 60.322 55.000 0.00 0.00 0.00 4.00
363 368 2.586357 GCGATCAAGCCCCGTCTC 60.586 66.667 0.00 0.00 0.00 3.36
526 531 1.654954 GCGTCGGAGAAGGTAGCTGA 61.655 60.000 0.00 0.00 39.69 4.26
533 538 1.079127 GAAGGTAGCTGAGGCGCAA 60.079 57.895 10.83 0.00 44.37 4.85
631 650 8.122481 AGGGGAAATCCATGTAGAAAATAGTTT 58.878 33.333 1.22 0.00 37.91 2.66
1022 1058 2.290260 TGCAGAACATCAACCGGATCTT 60.290 45.455 9.46 0.00 32.57 2.40
1040 1076 2.154462 CTTGATCTCCAACACCACCAC 58.846 52.381 0.00 0.00 0.00 4.16
1236 1272 3.010808 TCCCACCTGTTATTTTCCGGAAT 59.989 43.478 19.62 6.63 0.00 3.01
1375 1411 7.869429 ACACAATGGAAATTCTGAAATGTTCTC 59.131 33.333 0.00 0.00 0.00 2.87
1496 1532 7.574030 GCTCTGCTATAGAACATTCGTATCTCA 60.574 40.741 3.21 0.00 34.32 3.27
1505 1541 4.495422 ACATTCGTATCTCAAGAAGCGTT 58.505 39.130 6.52 0.00 0.00 4.84
1618 1654 6.709018 ATGCACATTTGATTCATGAGATGA 57.291 33.333 0.00 0.00 37.55 2.92
1711 1747 8.211629 AGTTTCATGTTGAGGTACTAAGAGTTT 58.788 33.333 0.00 0.00 41.55 2.66
1716 1752 7.120923 TGTTGAGGTACTAAGAGTTTCTTGT 57.879 36.000 1.71 1.66 41.55 3.16
2168 2204 0.927537 TGTTTGTGTTCAGTCGCTCG 59.072 50.000 0.00 0.00 0.00 5.03
2471 2537 4.582656 TGCCTTGCTCTGCTAAACTTTTTA 59.417 37.500 0.00 0.00 0.00 1.52
2614 2680 8.902806 TGATGTTGATGTTTGATTAATACTCCC 58.097 33.333 0.00 0.00 0.00 4.30
2615 2681 9.125026 GATGTTGATGTTTGATTAATACTCCCT 57.875 33.333 0.00 0.00 0.00 4.20
2616 2682 8.506168 TGTTGATGTTTGATTAATACTCCCTC 57.494 34.615 0.00 0.00 0.00 4.30
2617 2683 7.556275 TGTTGATGTTTGATTAATACTCCCTCC 59.444 37.037 0.00 0.00 0.00 4.30
2618 2684 6.288294 TGATGTTTGATTAATACTCCCTCCG 58.712 40.000 0.00 0.00 0.00 4.63
2619 2685 5.687166 TGTTTGATTAATACTCCCTCCGT 57.313 39.130 0.00 0.00 0.00 4.69
2620 2686 6.057321 TGTTTGATTAATACTCCCTCCGTT 57.943 37.500 0.00 0.00 0.00 4.44
2621 2687 6.110707 TGTTTGATTAATACTCCCTCCGTTC 58.889 40.000 0.00 0.00 0.00 3.95
2622 2688 4.950205 TGATTAATACTCCCTCCGTTCC 57.050 45.455 0.00 0.00 0.00 3.62
2623 2689 4.553678 TGATTAATACTCCCTCCGTTCCT 58.446 43.478 0.00 0.00 0.00 3.36
2624 2690 4.966805 TGATTAATACTCCCTCCGTTCCTT 59.033 41.667 0.00 0.00 0.00 3.36
2625 2691 4.748277 TTAATACTCCCTCCGTTCCTTG 57.252 45.455 0.00 0.00 0.00 3.61
2626 2692 2.544844 ATACTCCCTCCGTTCCTTGA 57.455 50.000 0.00 0.00 0.00 3.02
2627 2693 2.544844 TACTCCCTCCGTTCCTTGAT 57.455 50.000 0.00 0.00 0.00 2.57
2628 2694 2.544844 ACTCCCTCCGTTCCTTGATA 57.455 50.000 0.00 0.00 0.00 2.15
2629 2695 3.047695 ACTCCCTCCGTTCCTTGATAT 57.952 47.619 0.00 0.00 0.00 1.63
2630 2696 4.194678 ACTCCCTCCGTTCCTTGATATA 57.805 45.455 0.00 0.00 0.00 0.86
2631 2697 4.553678 ACTCCCTCCGTTCCTTGATATAA 58.446 43.478 0.00 0.00 0.00 0.98
2632 2698 4.589374 ACTCCCTCCGTTCCTTGATATAAG 59.411 45.833 0.00 0.00 0.00 1.73
2633 2699 3.901844 TCCCTCCGTTCCTTGATATAAGG 59.098 47.826 0.00 0.00 38.78 2.69
2634 2700 3.646637 CCCTCCGTTCCTTGATATAAGGT 59.353 47.826 5.67 0.00 38.55 3.50
2635 2701 4.503296 CCCTCCGTTCCTTGATATAAGGTG 60.503 50.000 5.67 0.00 38.55 4.00
2636 2702 4.101119 CCTCCGTTCCTTGATATAAGGTGT 59.899 45.833 5.67 0.00 38.55 4.16
2637 2703 5.303589 CCTCCGTTCCTTGATATAAGGTGTA 59.696 44.000 5.67 0.00 38.55 2.90
2638 2704 6.014499 CCTCCGTTCCTTGATATAAGGTGTAT 60.014 42.308 5.67 0.00 38.55 2.29
2639 2705 7.177921 CCTCCGTTCCTTGATATAAGGTGTATA 59.822 40.741 5.67 0.00 38.55 1.47
2640 2706 8.118976 TCCGTTCCTTGATATAAGGTGTATAG 57.881 38.462 5.67 0.00 38.55 1.31
2641 2707 7.946219 TCCGTTCCTTGATATAAGGTGTATAGA 59.054 37.037 5.67 0.00 38.55 1.98
2642 2708 8.750298 CCGTTCCTTGATATAAGGTGTATAGAT 58.250 37.037 5.67 0.00 38.55 1.98
2672 2738 9.793259 TGAGAAAAAGTCTGAAATATAAGGTGT 57.207 29.630 0.00 0.00 36.41 4.16
2678 2744 7.715265 AGTCTGAAATATAAGGTGTATTGCG 57.285 36.000 0.00 0.00 0.00 4.85
2679 2745 7.272978 AGTCTGAAATATAAGGTGTATTGCGT 58.727 34.615 0.00 0.00 0.00 5.24
2680 2746 7.769044 AGTCTGAAATATAAGGTGTATTGCGTT 59.231 33.333 0.00 0.00 0.00 4.84
2681 2747 7.850982 GTCTGAAATATAAGGTGTATTGCGTTG 59.149 37.037 0.00 0.00 0.00 4.10
2682 2748 6.491394 TGAAATATAAGGTGTATTGCGTTGC 58.509 36.000 0.00 0.00 0.00 4.17
2683 2749 6.094186 TGAAATATAAGGTGTATTGCGTTGCA 59.906 34.615 0.00 0.00 36.47 4.08
2684 2750 3.757745 ATAAGGTGTATTGCGTTGCAC 57.242 42.857 0.00 0.00 38.71 4.57
2685 2751 4.859784 GGTGTATTGCGTTGCACC 57.140 55.556 9.58 9.58 43.52 5.01
2687 2753 3.086161 GTGTATTGCGTTGCACCAC 57.914 52.632 0.00 0.00 38.71 4.16
2688 2754 0.591170 GTGTATTGCGTTGCACCACT 59.409 50.000 0.00 0.00 38.71 4.00
2689 2755 0.871722 TGTATTGCGTTGCACCACTC 59.128 50.000 0.00 0.00 38.71 3.51
2690 2756 0.179225 GTATTGCGTTGCACCACTCG 60.179 55.000 0.00 0.00 38.71 4.18
2691 2757 0.601576 TATTGCGTTGCACCACTCGT 60.602 50.000 0.00 0.00 38.71 4.18
2692 2758 1.444119 ATTGCGTTGCACCACTCGTT 61.444 50.000 0.00 0.00 38.71 3.85
2693 2759 1.649390 TTGCGTTGCACCACTCGTTT 61.649 50.000 0.00 0.00 38.71 3.60
2694 2760 1.654137 GCGTTGCACCACTCGTTTG 60.654 57.895 0.00 0.00 0.00 2.93
2695 2761 1.010125 CGTTGCACCACTCGTTTGG 60.010 57.895 3.82 3.82 43.04 3.28
2696 2762 1.433053 CGTTGCACCACTCGTTTGGA 61.433 55.000 11.38 0.00 39.24 3.53
2697 2763 0.951558 GTTGCACCACTCGTTTGGAT 59.048 50.000 11.38 0.00 39.24 3.41
2698 2764 2.147958 GTTGCACCACTCGTTTGGATA 58.852 47.619 11.38 0.00 39.24 2.59
2699 2765 2.747446 GTTGCACCACTCGTTTGGATAT 59.253 45.455 11.38 0.00 39.24 1.63
2700 2766 3.066291 TGCACCACTCGTTTGGATATT 57.934 42.857 11.38 0.00 39.24 1.28
2701 2767 3.417101 TGCACCACTCGTTTGGATATTT 58.583 40.909 11.38 0.00 39.24 1.40
2702 2768 3.823873 TGCACCACTCGTTTGGATATTTT 59.176 39.130 11.38 0.00 39.24 1.82
2703 2769 4.279671 TGCACCACTCGTTTGGATATTTTT 59.720 37.500 11.38 0.00 39.24 1.94
2744 2810 8.854614 ACATTTCCTTATATCATGTAAGCTCC 57.145 34.615 0.00 0.00 0.00 4.70
2745 2811 8.664079 ACATTTCCTTATATCATGTAAGCTCCT 58.336 33.333 0.00 0.00 0.00 3.69
2746 2812 9.160496 CATTTCCTTATATCATGTAAGCTCCTC 57.840 37.037 0.00 0.00 0.00 3.71
2747 2813 8.497910 TTTCCTTATATCATGTAAGCTCCTCT 57.502 34.615 0.00 0.00 0.00 3.69
2748 2814 9.601810 TTTCCTTATATCATGTAAGCTCCTCTA 57.398 33.333 0.00 0.00 0.00 2.43
2749 2815 9.775539 TTCCTTATATCATGTAAGCTCCTCTAT 57.224 33.333 0.00 0.00 0.00 1.98
2750 2816 9.775539 TCCTTATATCATGTAAGCTCCTCTATT 57.224 33.333 0.00 0.00 0.00 1.73
2779 2845 9.671279 TTCATGTCAATTAGTCATGTGTAATCT 57.329 29.630 12.87 0.00 42.18 2.40
2780 2846 9.317936 TCATGTCAATTAGTCATGTGTAATCTC 57.682 33.333 12.87 0.00 42.18 2.75
2781 2847 9.101655 CATGTCAATTAGTCATGTGTAATCTCA 57.898 33.333 0.00 0.11 38.46 3.27
2782 2848 8.479313 TGTCAATTAGTCATGTGTAATCTCAC 57.521 34.615 0.00 0.00 38.63 3.51
2783 2849 8.314021 TGTCAATTAGTCATGTGTAATCTCACT 58.686 33.333 0.00 0.00 38.90 3.41
2784 2850 8.812329 GTCAATTAGTCATGTGTAATCTCACTC 58.188 37.037 0.00 0.00 38.90 3.51
2785 2851 8.531146 TCAATTAGTCATGTGTAATCTCACTCA 58.469 33.333 0.00 0.00 38.90 3.41
2786 2852 9.154847 CAATTAGTCATGTGTAATCTCACTCAA 57.845 33.333 0.00 0.00 38.90 3.02
2787 2853 9.725019 AATTAGTCATGTGTAATCTCACTCAAA 57.275 29.630 0.00 0.00 38.90 2.69
2788 2854 9.725019 ATTAGTCATGTGTAATCTCACTCAAAA 57.275 29.630 0.00 0.00 38.90 2.44
2789 2855 7.426929 AGTCATGTGTAATCTCACTCAAAAC 57.573 36.000 0.00 0.00 38.90 2.43
2790 2856 7.220030 AGTCATGTGTAATCTCACTCAAAACT 58.780 34.615 0.00 0.00 38.90 2.66
2791 2857 7.716998 AGTCATGTGTAATCTCACTCAAAACTT 59.283 33.333 0.00 0.00 38.90 2.66
2792 2858 7.800380 GTCATGTGTAATCTCACTCAAAACTTG 59.200 37.037 0.00 0.00 38.90 3.16
2793 2859 7.498900 TCATGTGTAATCTCACTCAAAACTTGT 59.501 33.333 0.00 0.00 38.90 3.16
2794 2860 7.015226 TGTGTAATCTCACTCAAAACTTGTG 57.985 36.000 0.00 0.00 38.90 3.33
2795 2861 6.821160 TGTGTAATCTCACTCAAAACTTGTGA 59.179 34.615 0.00 0.00 38.90 3.58
2796 2862 7.335673 TGTGTAATCTCACTCAAAACTTGTGAA 59.664 33.333 0.00 0.00 39.74 3.18
2797 2863 8.181573 GTGTAATCTCACTCAAAACTTGTGAAA 58.818 33.333 0.00 0.00 39.74 2.69
2798 2864 8.902806 TGTAATCTCACTCAAAACTTGTGAAAT 58.097 29.630 0.00 0.00 39.74 2.17
2799 2865 9.736023 GTAATCTCACTCAAAACTTGTGAAATT 57.264 29.630 0.00 0.00 39.74 1.82
2803 2869 8.567948 TCTCACTCAAAACTTGTGAAATTATCC 58.432 33.333 0.00 0.00 39.74 2.59
2804 2870 7.657336 TCACTCAAAACTTGTGAAATTATCCC 58.343 34.615 0.00 0.00 37.71 3.85
2805 2871 7.505585 TCACTCAAAACTTGTGAAATTATCCCT 59.494 33.333 0.00 0.00 37.71 4.20
2806 2872 7.809806 CACTCAAAACTTGTGAAATTATCCCTC 59.190 37.037 0.00 0.00 33.95 4.30
2807 2873 7.039714 ACTCAAAACTTGTGAAATTATCCCTCC 60.040 37.037 0.00 0.00 0.00 4.30
2808 2874 6.780031 TCAAAACTTGTGAAATTATCCCTCCA 59.220 34.615 0.00 0.00 0.00 3.86
2809 2875 6.590234 AAACTTGTGAAATTATCCCTCCAC 57.410 37.500 0.00 0.00 0.00 4.02
2810 2876 4.261801 ACTTGTGAAATTATCCCTCCACG 58.738 43.478 0.00 0.00 0.00 4.94
2811 2877 2.639065 TGTGAAATTATCCCTCCACGC 58.361 47.619 0.00 0.00 0.00 5.34
2812 2878 1.597663 GTGAAATTATCCCTCCACGCG 59.402 52.381 3.53 3.53 0.00 6.01
2813 2879 1.483004 TGAAATTATCCCTCCACGCGA 59.517 47.619 15.93 0.00 0.00 5.87
2814 2880 2.135933 GAAATTATCCCTCCACGCGAG 58.864 52.381 15.93 4.16 38.46 5.03
2816 2882 1.120530 ATTATCCCTCCACGCGAGTT 58.879 50.000 15.93 0.00 46.40 3.01
2817 2883 0.458669 TTATCCCTCCACGCGAGTTC 59.541 55.000 15.93 0.00 46.40 3.01
2818 2884 0.395311 TATCCCTCCACGCGAGTTCT 60.395 55.000 15.93 0.00 46.40 3.01
2819 2885 1.258445 ATCCCTCCACGCGAGTTCTT 61.258 55.000 15.93 0.00 46.40 2.52
2820 2886 1.004918 CCCTCCACGCGAGTTCTTT 60.005 57.895 15.93 0.00 46.40 2.52
2821 2887 0.245539 CCCTCCACGCGAGTTCTTTA 59.754 55.000 15.93 0.00 46.40 1.85
2822 2888 1.337447 CCCTCCACGCGAGTTCTTTAA 60.337 52.381 15.93 0.00 46.40 1.52
2823 2889 2.618053 CCTCCACGCGAGTTCTTTAAT 58.382 47.619 15.93 0.00 46.40 1.40
2824 2890 3.000727 CCTCCACGCGAGTTCTTTAATT 58.999 45.455 15.93 0.00 46.40 1.40
2825 2891 3.435671 CCTCCACGCGAGTTCTTTAATTT 59.564 43.478 15.93 0.00 46.40 1.82
2826 2892 4.435651 CCTCCACGCGAGTTCTTTAATTTC 60.436 45.833 15.93 0.00 46.40 2.17
2827 2893 3.434299 TCCACGCGAGTTCTTTAATTTCC 59.566 43.478 15.93 0.00 46.40 3.13
2828 2894 3.404564 CACGCGAGTTCTTTAATTTCCG 58.595 45.455 15.93 0.00 46.40 4.30
2829 2895 3.062042 ACGCGAGTTCTTTAATTTCCGT 58.938 40.909 15.93 0.00 46.40 4.69
2830 2896 3.120786 ACGCGAGTTCTTTAATTTCCGTG 60.121 43.478 15.93 0.00 46.40 4.94
2831 2897 3.161306 GCGAGTTCTTTAATTTCCGTGC 58.839 45.455 0.00 0.00 0.00 5.34
2832 2898 3.743886 CGAGTTCTTTAATTTCCGTGCC 58.256 45.455 0.00 0.00 0.00 5.01
2833 2899 3.187637 CGAGTTCTTTAATTTCCGTGCCA 59.812 43.478 0.00 0.00 0.00 4.92
2834 2900 4.319911 CGAGTTCTTTAATTTCCGTGCCAA 60.320 41.667 0.00 0.00 0.00 4.52
2835 2901 5.523438 AGTTCTTTAATTTCCGTGCCAAA 57.477 34.783 0.00 0.00 0.00 3.28
2836 2902 5.908341 AGTTCTTTAATTTCCGTGCCAAAA 58.092 33.333 0.00 0.00 0.00 2.44
2837 2903 6.342111 AGTTCTTTAATTTCCGTGCCAAAAA 58.658 32.000 0.00 0.00 0.00 1.94
2838 2904 6.256975 AGTTCTTTAATTTCCGTGCCAAAAAC 59.743 34.615 0.00 0.00 0.00 2.43
2839 2905 5.908341 TCTTTAATTTCCGTGCCAAAAACT 58.092 33.333 0.00 0.00 0.00 2.66
2840 2906 7.040473 TCTTTAATTTCCGTGCCAAAAACTA 57.960 32.000 0.00 0.00 0.00 2.24
2841 2907 7.662897 TCTTTAATTTCCGTGCCAAAAACTAT 58.337 30.769 0.00 0.00 0.00 2.12
2842 2908 8.794553 TCTTTAATTTCCGTGCCAAAAACTATA 58.205 29.630 0.00 0.00 0.00 1.31
2843 2909 8.745464 TTTAATTTCCGTGCCAAAAACTATAC 57.255 30.769 0.00 0.00 0.00 1.47
2844 2910 5.968528 ATTTCCGTGCCAAAAACTATACA 57.031 34.783 0.00 0.00 0.00 2.29
2845 2911 4.752661 TTCCGTGCCAAAAACTATACAC 57.247 40.909 0.00 0.00 0.00 2.90
2846 2912 3.075884 TCCGTGCCAAAAACTATACACC 58.924 45.455 0.00 0.00 0.00 4.16
2847 2913 2.162809 CCGTGCCAAAAACTATACACCC 59.837 50.000 0.00 0.00 0.00 4.61
2848 2914 3.078837 CGTGCCAAAAACTATACACCCT 58.921 45.455 0.00 0.00 0.00 4.34
2849 2915 4.255301 CGTGCCAAAAACTATACACCCTA 58.745 43.478 0.00 0.00 0.00 3.53
2850 2916 4.879545 CGTGCCAAAAACTATACACCCTAT 59.120 41.667 0.00 0.00 0.00 2.57
2851 2917 6.050432 CGTGCCAAAAACTATACACCCTATA 58.950 40.000 0.00 0.00 0.00 1.31
2852 2918 6.708949 CGTGCCAAAAACTATACACCCTATAT 59.291 38.462 0.00 0.00 0.00 0.86
2853 2919 7.095355 CGTGCCAAAAACTATACACCCTATATC 60.095 40.741 0.00 0.00 0.00 1.63
2854 2920 7.937394 GTGCCAAAAACTATACACCCTATATCT 59.063 37.037 0.00 0.00 0.00 1.98
2855 2921 9.161572 TGCCAAAAACTATACACCCTATATCTA 57.838 33.333 0.00 0.00 0.00 1.98
2856 2922 9.654663 GCCAAAAACTATACACCCTATATCTAG 57.345 37.037 0.00 0.00 0.00 2.43
2861 2927 8.804912 AACTATACACCCTATATCTAGGAACG 57.195 38.462 5.74 0.00 46.66 3.95
2862 2928 7.344913 ACTATACACCCTATATCTAGGAACGG 58.655 42.308 5.74 0.00 46.66 4.44
2863 2929 4.736611 ACACCCTATATCTAGGAACGGA 57.263 45.455 5.74 0.00 46.66 4.69
2864 2930 4.664392 ACACCCTATATCTAGGAACGGAG 58.336 47.826 5.74 0.00 46.66 4.63
2865 2931 4.017808 CACCCTATATCTAGGAACGGAGG 58.982 52.174 5.74 0.00 46.66 4.30
2866 2932 3.011482 ACCCTATATCTAGGAACGGAGGG 59.989 52.174 5.74 11.54 46.66 4.30
2867 2933 3.268856 CCCTATATCTAGGAACGGAGGGA 59.731 52.174 5.74 0.00 46.66 4.20
2868 2934 4.528920 CCTATATCTAGGAACGGAGGGAG 58.471 52.174 0.00 0.00 46.66 4.30
2869 2935 4.018233 CCTATATCTAGGAACGGAGGGAGT 60.018 50.000 0.00 0.00 46.66 3.85
2870 2936 5.191323 CCTATATCTAGGAACGGAGGGAGTA 59.809 48.000 0.00 0.00 46.66 2.59
3020 3086 2.362077 GGTGGCATGAGCGGAATAAATT 59.638 45.455 0.00 0.00 43.41 1.82
3091 3157 4.767841 CGCGACAGAGAGCAGCGT 62.768 66.667 0.00 0.00 44.96 5.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 6.371809 TTTTCTTGCTGTCGACAACTTTAT 57.628 33.333 20.49 0.00 0.00 1.40
198 200 0.178984 TATCATCTACCGGTCGGCCA 60.179 55.000 12.40 0.00 39.32 5.36
363 368 4.201990 GCATCCTAGCATTTTGTTCCTCTG 60.202 45.833 0.00 0.00 0.00 3.35
790 817 9.787435 AGAGTAAATACAAAAGTATTGACACCA 57.213 29.630 14.92 0.00 34.56 4.17
1022 1058 0.034756 CGTGGTGGTGTTGGAGATCA 59.965 55.000 0.00 0.00 0.00 2.92
1040 1076 1.587350 ATGACGCAGAGCATCGACG 60.587 57.895 0.00 0.00 42.67 5.12
1236 1272 2.539338 GCTCGTTTGGTCGGCACAA 61.539 57.895 0.00 0.00 0.00 3.33
1375 1411 4.563168 GGAGGAGAAGATAGCATGACCATG 60.563 50.000 0.00 5.67 41.60 3.66
1505 1541 5.863965 TGACAAATAGATATGAATCCGGCA 58.136 37.500 0.00 0.00 31.98 5.69
1711 1747 7.068348 GGATGGGTCTATATTATCGCTACAAGA 59.932 40.741 0.00 0.00 0.00 3.02
1716 1752 6.183360 GCTTGGATGGGTCTATATTATCGCTA 60.183 42.308 0.00 0.00 0.00 4.26
1786 1822 4.640771 AGAAGGCTTTCTCATTACCACA 57.359 40.909 5.05 0.00 39.46 4.17
2168 2204 0.525668 CGACACAGCATCTACCCGTC 60.526 60.000 0.00 0.00 0.00 4.79
2610 2676 4.021016 CCTTATATCAAGGAACGGAGGGAG 60.021 50.000 0.00 0.00 39.81 4.30
2611 2677 3.901844 CCTTATATCAAGGAACGGAGGGA 59.098 47.826 0.00 0.00 39.81 4.20
2612 2678 3.646637 ACCTTATATCAAGGAACGGAGGG 59.353 47.826 9.96 0.00 39.81 4.30
2613 2679 4.101119 ACACCTTATATCAAGGAACGGAGG 59.899 45.833 9.96 0.00 39.81 4.30
2614 2680 5.277857 ACACCTTATATCAAGGAACGGAG 57.722 43.478 9.96 0.00 39.81 4.63
2615 2681 6.989155 ATACACCTTATATCAAGGAACGGA 57.011 37.500 9.96 0.00 39.81 4.69
2616 2682 8.118976 TCTATACACCTTATATCAAGGAACGG 57.881 38.462 9.96 0.05 39.81 4.44
2646 2712 9.793259 ACACCTTATATTTCAGACTTTTTCTCA 57.207 29.630 0.00 0.00 28.96 3.27
2652 2718 8.612619 CGCAATACACCTTATATTTCAGACTTT 58.387 33.333 0.00 0.00 0.00 2.66
2653 2719 7.769044 ACGCAATACACCTTATATTTCAGACTT 59.231 33.333 0.00 0.00 0.00 3.01
2654 2720 7.272978 ACGCAATACACCTTATATTTCAGACT 58.727 34.615 0.00 0.00 0.00 3.24
2655 2721 7.478520 ACGCAATACACCTTATATTTCAGAC 57.521 36.000 0.00 0.00 0.00 3.51
2656 2722 7.466725 GCAACGCAATACACCTTATATTTCAGA 60.467 37.037 0.00 0.00 0.00 3.27
2657 2723 6.632834 GCAACGCAATACACCTTATATTTCAG 59.367 38.462 0.00 0.00 0.00 3.02
2658 2724 6.094186 TGCAACGCAATACACCTTATATTTCA 59.906 34.615 0.00 0.00 34.76 2.69
2659 2725 6.413818 GTGCAACGCAATACACCTTATATTTC 59.586 38.462 0.00 0.00 41.47 2.17
2660 2726 6.262601 GTGCAACGCAATACACCTTATATTT 58.737 36.000 0.00 0.00 41.47 1.40
2661 2727 5.816919 GTGCAACGCAATACACCTTATATT 58.183 37.500 0.00 0.00 41.47 1.28
2662 2728 5.418310 GTGCAACGCAATACACCTTATAT 57.582 39.130 0.00 0.00 41.47 0.86
2663 2729 4.868450 GTGCAACGCAATACACCTTATA 57.132 40.909 0.00 0.00 41.47 0.98
2664 2730 3.757745 GTGCAACGCAATACACCTTAT 57.242 42.857 0.00 0.00 41.47 1.73
2668 2734 4.859784 GGTGCAACGCAATACACC 57.140 55.556 0.00 0.00 45.22 4.16
2669 2735 0.591170 AGTGGTGCAACGCAATACAC 59.409 50.000 19.16 0.00 41.47 2.90
2670 2736 0.871722 GAGTGGTGCAACGCAATACA 59.128 50.000 19.16 0.00 41.47 2.29
2671 2737 0.179225 CGAGTGGTGCAACGCAATAC 60.179 55.000 19.16 0.00 41.47 1.89
2672 2738 0.601576 ACGAGTGGTGCAACGCAATA 60.602 50.000 19.16 0.00 41.47 1.90
2673 2739 1.444119 AACGAGTGGTGCAACGCAAT 61.444 50.000 19.16 0.00 41.47 3.56
2674 2740 1.649390 AAACGAGTGGTGCAACGCAA 61.649 50.000 19.16 0.00 41.47 4.85
2675 2741 2.109739 AAACGAGTGGTGCAACGCA 61.110 52.632 19.16 0.00 38.12 5.24
2676 2742 1.654137 CAAACGAGTGGTGCAACGC 60.654 57.895 7.36 7.36 38.12 4.84
2677 2743 1.010125 CCAAACGAGTGGTGCAACG 60.010 57.895 0.00 0.00 38.12 4.10
2678 2744 0.951558 ATCCAAACGAGTGGTGCAAC 59.048 50.000 0.00 0.00 39.88 4.17
2679 2745 2.552599 TATCCAAACGAGTGGTGCAA 57.447 45.000 8.62 0.00 39.88 4.08
2680 2746 2.779755 ATATCCAAACGAGTGGTGCA 57.220 45.000 8.62 0.00 39.88 4.57
2681 2747 4.434713 AAAATATCCAAACGAGTGGTGC 57.565 40.909 8.62 0.00 39.88 5.01
2718 2784 9.944376 GGAGCTTACATGATATAAGGAAATGTA 57.056 33.333 0.00 0.00 33.67 2.29
2719 2785 8.664079 AGGAGCTTACATGATATAAGGAAATGT 58.336 33.333 0.00 0.00 35.70 2.71
2720 2786 9.160496 GAGGAGCTTACATGATATAAGGAAATG 57.840 37.037 0.00 0.00 31.44 2.32
2721 2787 9.110382 AGAGGAGCTTACATGATATAAGGAAAT 57.890 33.333 0.00 0.00 31.44 2.17
2722 2788 8.497910 AGAGGAGCTTACATGATATAAGGAAA 57.502 34.615 0.00 0.00 31.44 3.13
2723 2789 9.775539 ATAGAGGAGCTTACATGATATAAGGAA 57.224 33.333 0.00 0.00 31.44 3.36
2724 2790 9.775539 AATAGAGGAGCTTACATGATATAAGGA 57.224 33.333 0.00 0.00 31.44 3.36
2753 2819 9.671279 AGATTACACATGACTAATTGACATGAA 57.329 29.630 20.06 10.12 46.51 2.57
2754 2820 9.317936 GAGATTACACATGACTAATTGACATGA 57.682 33.333 20.06 5.97 46.51 3.07
2756 2822 9.102757 GTGAGATTACACATGACTAATTGACAT 57.897 33.333 0.00 0.00 40.11 3.06
2757 2823 8.314021 AGTGAGATTACACATGACTAATTGACA 58.686 33.333 0.00 0.31 42.45 3.58
2758 2824 8.709386 AGTGAGATTACACATGACTAATTGAC 57.291 34.615 0.00 0.00 42.45 3.18
2759 2825 8.531146 TGAGTGAGATTACACATGACTAATTGA 58.469 33.333 0.00 0.00 42.45 2.57
2760 2826 8.707938 TGAGTGAGATTACACATGACTAATTG 57.292 34.615 0.00 0.00 42.45 2.32
2761 2827 9.725019 TTTGAGTGAGATTACACATGACTAATT 57.275 29.630 0.00 0.00 42.45 1.40
2762 2828 9.725019 TTTTGAGTGAGATTACACATGACTAAT 57.275 29.630 0.00 0.00 42.45 1.73
2763 2829 8.988934 GTTTTGAGTGAGATTACACATGACTAA 58.011 33.333 0.00 0.00 42.45 2.24
2764 2830 8.367911 AGTTTTGAGTGAGATTACACATGACTA 58.632 33.333 0.00 0.00 42.45 2.59
2765 2831 7.220030 AGTTTTGAGTGAGATTACACATGACT 58.780 34.615 0.00 0.00 42.45 3.41
2766 2832 7.426929 AGTTTTGAGTGAGATTACACATGAC 57.573 36.000 0.00 0.00 42.45 3.06
2767 2833 7.498900 ACAAGTTTTGAGTGAGATTACACATGA 59.501 33.333 0.00 0.00 42.45 3.07
2768 2834 7.588854 CACAAGTTTTGAGTGAGATTACACATG 59.411 37.037 0.00 0.00 42.45 3.21
2769 2835 7.498900 TCACAAGTTTTGAGTGAGATTACACAT 59.501 33.333 0.00 0.00 42.45 3.21
2770 2836 6.821160 TCACAAGTTTTGAGTGAGATTACACA 59.179 34.615 0.00 0.00 42.45 3.72
2771 2837 7.246674 TCACAAGTTTTGAGTGAGATTACAC 57.753 36.000 0.00 0.00 37.36 2.90
2772 2838 7.857734 TTCACAAGTTTTGAGTGAGATTACA 57.142 32.000 0.00 0.00 42.54 2.41
2773 2839 9.736023 AATTTCACAAGTTTTGAGTGAGATTAC 57.264 29.630 8.27 0.00 42.00 1.89
2777 2843 8.567948 GGATAATTTCACAAGTTTTGAGTGAGA 58.432 33.333 0.00 0.00 42.54 3.27
2778 2844 7.809806 GGGATAATTTCACAAGTTTTGAGTGAG 59.190 37.037 0.00 0.00 42.54 3.51
2779 2845 7.505585 AGGGATAATTTCACAAGTTTTGAGTGA 59.494 33.333 0.00 0.00 40.24 3.41
2780 2846 7.661040 AGGGATAATTTCACAAGTTTTGAGTG 58.339 34.615 0.00 0.00 34.67 3.51
2781 2847 7.039714 GGAGGGATAATTTCACAAGTTTTGAGT 60.040 37.037 0.00 0.00 0.00 3.41
2782 2848 7.039784 TGGAGGGATAATTTCACAAGTTTTGAG 60.040 37.037 0.00 0.00 0.00 3.02
2783 2849 6.780031 TGGAGGGATAATTTCACAAGTTTTGA 59.220 34.615 0.00 0.00 0.00 2.69
2784 2850 6.868339 GTGGAGGGATAATTTCACAAGTTTTG 59.132 38.462 0.00 0.00 0.00 2.44
2785 2851 6.294508 CGTGGAGGGATAATTTCACAAGTTTT 60.295 38.462 0.00 0.00 0.00 2.43
2786 2852 5.183140 CGTGGAGGGATAATTTCACAAGTTT 59.817 40.000 0.00 0.00 0.00 2.66
2787 2853 4.700213 CGTGGAGGGATAATTTCACAAGTT 59.300 41.667 0.00 0.00 0.00 2.66
2788 2854 4.261801 CGTGGAGGGATAATTTCACAAGT 58.738 43.478 0.00 0.00 0.00 3.16
2789 2855 3.065371 GCGTGGAGGGATAATTTCACAAG 59.935 47.826 0.00 0.00 0.00 3.16
2790 2856 3.013921 GCGTGGAGGGATAATTTCACAA 58.986 45.455 0.00 0.00 0.00 3.33
2791 2857 2.639065 GCGTGGAGGGATAATTTCACA 58.361 47.619 0.00 0.00 0.00 3.58
2792 2858 1.597663 CGCGTGGAGGGATAATTTCAC 59.402 52.381 0.00 0.00 34.27 3.18
2793 2859 1.483004 TCGCGTGGAGGGATAATTTCA 59.517 47.619 5.77 0.00 36.85 2.69
2794 2860 2.135933 CTCGCGTGGAGGGATAATTTC 58.864 52.381 5.77 0.00 41.18 2.17
2795 2861 2.240493 CTCGCGTGGAGGGATAATTT 57.760 50.000 5.77 0.00 41.18 1.82
2796 2862 3.989104 CTCGCGTGGAGGGATAATT 57.011 52.632 5.77 0.00 41.18 1.40
2805 2871 3.434299 GGAAATTAAAGAACTCGCGTGGA 59.566 43.478 13.32 0.00 0.00 4.02
2806 2872 3.723835 CGGAAATTAAAGAACTCGCGTGG 60.724 47.826 13.32 6.71 0.00 4.94
2807 2873 3.120786 ACGGAAATTAAAGAACTCGCGTG 60.121 43.478 5.77 6.24 0.00 5.34
2808 2874 3.062042 ACGGAAATTAAAGAACTCGCGT 58.938 40.909 5.77 0.00 0.00 6.01
2809 2875 3.404564 CACGGAAATTAAAGAACTCGCG 58.595 45.455 0.00 0.00 0.00 5.87
2810 2876 3.161306 GCACGGAAATTAAAGAACTCGC 58.839 45.455 0.00 0.00 0.00 5.03
2811 2877 3.187637 TGGCACGGAAATTAAAGAACTCG 59.812 43.478 0.00 0.00 0.00 4.18
2812 2878 4.759516 TGGCACGGAAATTAAAGAACTC 57.240 40.909 0.00 0.00 0.00 3.01
2813 2879 5.523438 TTTGGCACGGAAATTAAAGAACT 57.477 34.783 0.00 0.00 0.00 3.01
2814 2880 6.256975 AGTTTTTGGCACGGAAATTAAAGAAC 59.743 34.615 0.00 0.00 0.00 3.01
2815 2881 6.342111 AGTTTTTGGCACGGAAATTAAAGAA 58.658 32.000 0.00 0.00 0.00 2.52
2816 2882 5.908341 AGTTTTTGGCACGGAAATTAAAGA 58.092 33.333 0.00 0.00 0.00 2.52
2817 2883 7.883229 ATAGTTTTTGGCACGGAAATTAAAG 57.117 32.000 0.00 0.00 0.00 1.85
2818 2884 8.358148 TGTATAGTTTTTGGCACGGAAATTAAA 58.642 29.630 0.00 0.00 0.00 1.52
2819 2885 7.808856 GTGTATAGTTTTTGGCACGGAAATTAA 59.191 33.333 0.00 0.00 0.00 1.40
2820 2886 7.306953 GTGTATAGTTTTTGGCACGGAAATTA 58.693 34.615 0.00 0.00 0.00 1.40
2821 2887 6.153756 GTGTATAGTTTTTGGCACGGAAATT 58.846 36.000 0.00 0.00 0.00 1.82
2822 2888 5.336134 GGTGTATAGTTTTTGGCACGGAAAT 60.336 40.000 0.00 0.00 0.00 2.17
2823 2889 4.023021 GGTGTATAGTTTTTGGCACGGAAA 60.023 41.667 0.00 0.00 0.00 3.13
2824 2890 3.502979 GGTGTATAGTTTTTGGCACGGAA 59.497 43.478 0.00 0.00 0.00 4.30
2825 2891 3.075884 GGTGTATAGTTTTTGGCACGGA 58.924 45.455 0.00 0.00 0.00 4.69
2826 2892 2.162809 GGGTGTATAGTTTTTGGCACGG 59.837 50.000 0.00 0.00 0.00 4.94
2827 2893 3.078837 AGGGTGTATAGTTTTTGGCACG 58.921 45.455 0.00 0.00 0.00 5.34
2828 2894 7.937394 AGATATAGGGTGTATAGTTTTTGGCAC 59.063 37.037 0.00 0.00 0.00 5.01
2829 2895 8.041143 AGATATAGGGTGTATAGTTTTTGGCA 57.959 34.615 0.00 0.00 0.00 4.92
2830 2896 9.654663 CTAGATATAGGGTGTATAGTTTTTGGC 57.345 37.037 0.00 0.00 0.00 4.52
2835 2901 9.240734 CGTTCCTAGATATAGGGTGTATAGTTT 57.759 37.037 13.45 0.00 37.81 2.66
2836 2902 7.833183 CCGTTCCTAGATATAGGGTGTATAGTT 59.167 40.741 13.45 0.00 37.81 2.24
2837 2903 7.183475 TCCGTTCCTAGATATAGGGTGTATAGT 59.817 40.741 13.45 0.00 37.81 2.12
2838 2904 7.571919 TCCGTTCCTAGATATAGGGTGTATAG 58.428 42.308 13.45 0.00 37.81 1.31
2839 2905 7.366281 CCTCCGTTCCTAGATATAGGGTGTATA 60.366 44.444 13.45 0.00 37.81 1.47
2840 2906 6.398655 TCCGTTCCTAGATATAGGGTGTAT 57.601 41.667 13.45 0.00 37.81 2.29
2841 2907 5.280882 CCTCCGTTCCTAGATATAGGGTGTA 60.281 48.000 13.45 0.00 37.81 2.90
2842 2908 4.508763 CCTCCGTTCCTAGATATAGGGTGT 60.509 50.000 13.45 0.00 37.81 4.16
2843 2909 4.017808 CCTCCGTTCCTAGATATAGGGTG 58.982 52.174 13.45 3.91 37.81 4.61
2844 2910 3.011482 CCCTCCGTTCCTAGATATAGGGT 59.989 52.174 13.45 0.00 38.09 4.34
2845 2911 3.268856 TCCCTCCGTTCCTAGATATAGGG 59.731 52.174 13.45 0.00 43.23 3.53
2846 2912 4.018233 ACTCCCTCCGTTCCTAGATATAGG 60.018 50.000 7.11 7.11 38.58 2.57
2847 2913 5.182169 ACTCCCTCCGTTCCTAGATATAG 57.818 47.826 0.00 0.00 0.00 1.31
2848 2914 6.905067 ATACTCCCTCCGTTCCTAGATATA 57.095 41.667 0.00 0.00 0.00 0.86
2849 2915 5.799978 ATACTCCCTCCGTTCCTAGATAT 57.200 43.478 0.00 0.00 0.00 1.63
2850 2916 6.708885 TTATACTCCCTCCGTTCCTAGATA 57.291 41.667 0.00 0.00 0.00 1.98
2851 2917 5.595814 TTATACTCCCTCCGTTCCTAGAT 57.404 43.478 0.00 0.00 0.00 1.98
2852 2918 5.393068 TTTATACTCCCTCCGTTCCTAGA 57.607 43.478 0.00 0.00 0.00 2.43
2853 2919 6.011481 AGATTTATACTCCCTCCGTTCCTAG 58.989 44.000 0.00 0.00 0.00 3.02
2854 2920 5.961897 AGATTTATACTCCCTCCGTTCCTA 58.038 41.667 0.00 0.00 0.00 2.94
2855 2921 4.817286 AGATTTATACTCCCTCCGTTCCT 58.183 43.478 0.00 0.00 0.00 3.36
2856 2922 5.070047 TGAAGATTTATACTCCCTCCGTTCC 59.930 44.000 0.00 0.00 0.00 3.62
2857 2923 6.158023 TGAAGATTTATACTCCCTCCGTTC 57.842 41.667 0.00 0.00 0.00 3.95
2858 2924 5.453480 GCTGAAGATTTATACTCCCTCCGTT 60.453 44.000 0.00 0.00 0.00 4.44
2859 2925 4.039366 GCTGAAGATTTATACTCCCTCCGT 59.961 45.833 0.00 0.00 0.00 4.69
2860 2926 4.282195 AGCTGAAGATTTATACTCCCTCCG 59.718 45.833 0.00 0.00 0.00 4.63
2861 2927 5.305644 TGAGCTGAAGATTTATACTCCCTCC 59.694 44.000 0.00 0.00 0.00 4.30
2862 2928 6.412362 TGAGCTGAAGATTTATACTCCCTC 57.588 41.667 0.00 0.00 0.00 4.30
2863 2929 6.328672 ACATGAGCTGAAGATTTATACTCCCT 59.671 38.462 0.00 0.00 0.00 4.20
2864 2930 6.529220 ACATGAGCTGAAGATTTATACTCCC 58.471 40.000 0.00 0.00 0.00 4.30
2865 2931 9.547753 TTTACATGAGCTGAAGATTTATACTCC 57.452 33.333 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.