Multiple sequence alignment - TraesCS7A01G034700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G034700 chr7A 100.000 3773 0 0 1 3773 15277305 15273533 0.000000e+00 6968.0
1 TraesCS7A01G034700 chr7A 88.505 2636 286 8 1153 3773 15254393 15251760 0.000000e+00 3173.0
2 TraesCS7A01G034700 chr7A 95.798 119 5 0 655 773 192671970 192671852 3.850000e-45 193.0
3 TraesCS7A01G034700 chr7D 97.761 2993 50 4 793 3773 26384405 26381418 0.000000e+00 5140.0
4 TraesCS7A01G034700 chr7D 88.693 2724 283 16 1072 3773 26449659 26446939 0.000000e+00 3301.0
5 TraesCS7A01G034700 chr7D 93.056 360 9 4 138 497 26385313 26384970 2.600000e-141 512.0
6 TraesCS7A01G034700 chr7D 82.765 586 62 21 103 664 16371028 16370458 1.580000e-133 486.0
7 TraesCS7A01G034700 chr7D 82.432 444 52 18 103 530 26450788 26450355 7.700000e-97 364.0
8 TraesCS7A01G034700 chr7D 97.059 170 5 0 495 664 26384610 26384441 1.720000e-73 287.0
9 TraesCS7A01G034700 chr7D 83.534 249 24 9 793 1026 26449902 26449656 2.280000e-52 217.0
10 TraesCS7A01G034700 chr7D 93.519 108 2 1 3 105 26385421 26385314 5.050000e-34 156.0
11 TraesCS7A01G034700 chr7D 100.000 41 0 0 524 564 26450344 26450304 4.040000e-10 76.8
12 TraesCS7A01G034700 chr4A 89.344 3003 294 15 793 3773 718464952 718467950 0.000000e+00 3749.0
13 TraesCS7A01G034700 chr4A 88.741 3002 314 13 793 3773 718898235 718895237 0.000000e+00 3650.0
14 TraesCS7A01G034700 chr4A 85.161 310 39 4 2614 2916 718250400 718250709 1.020000e-80 311.0
15 TraesCS7A01G034700 chr4A 81.452 372 37 11 308 664 718898625 718898271 3.710000e-70 276.0
16 TraesCS7A01G034700 chr4A 81.341 343 55 6 2912 3246 718256367 718256708 1.730000e-68 270.0
17 TraesCS7A01G034700 chr4A 83.113 302 34 12 100 394 718458296 718458587 3.740000e-65 259.0
18 TraesCS7A01G034700 chr4A 91.241 137 9 3 641 776 96321338 96321204 2.310000e-42 183.0
19 TraesCS7A01G034700 chr3D 78.531 2818 533 54 1009 3773 579372061 579369263 0.000000e+00 1786.0
20 TraesCS7A01G034700 chr1A 99.115 113 1 0 662 774 168552714 168552602 1.780000e-48 204.0
21 TraesCS7A01G034700 chr2B 98.246 114 2 0 656 769 25365978 25366091 2.300000e-47 200.0
22 TraesCS7A01G034700 chr5B 96.639 119 2 2 659 777 558558586 558558702 2.970000e-46 196.0
23 TraesCS7A01G034700 chr5B 93.443 122 8 0 663 784 524744780 524744659 8.330000e-42 182.0
24 TraesCS7A01G034700 chr2D 95.082 122 6 0 652 773 627971502 627971623 3.850000e-45 193.0
25 TraesCS7A01G034700 chr1B 93.023 129 7 2 662 789 669891574 669891447 1.790000e-43 187.0
26 TraesCS7A01G034700 chr6D 93.023 129 6 3 653 781 132306864 132306989 6.440000e-43 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G034700 chr7A 15273533 15277305 3772 True 6968.00 6968 100.00000 1 3773 1 chr7A.!!$R2 3772
1 TraesCS7A01G034700 chr7A 15251760 15254393 2633 True 3173.00 3173 88.50500 1153 3773 1 chr7A.!!$R1 2620
2 TraesCS7A01G034700 chr7D 26381418 26385421 4003 True 1523.75 5140 95.34875 3 3773 4 chr7D.!!$R2 3770
3 TraesCS7A01G034700 chr7D 26446939 26450788 3849 True 989.70 3301 88.66475 103 3773 4 chr7D.!!$R3 3670
4 TraesCS7A01G034700 chr7D 16370458 16371028 570 True 486.00 486 82.76500 103 664 1 chr7D.!!$R1 561
5 TraesCS7A01G034700 chr4A 718464952 718467950 2998 False 3749.00 3749 89.34400 793 3773 1 chr4A.!!$F4 2980
6 TraesCS7A01G034700 chr4A 718895237 718898625 3388 True 1963.00 3650 85.09650 308 3773 2 chr4A.!!$R2 3465
7 TraesCS7A01G034700 chr3D 579369263 579372061 2798 True 1786.00 1786 78.53100 1009 3773 1 chr3D.!!$R1 2764

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
679 1360 0.329261 TCTACTCCCTCCGTTCGGAA 59.671 55.0 14.79 0.04 33.41 4.30 F
1065 1771 0.252239 TGTGCCTGCTCCTCTCCTTA 60.252 55.0 0.00 0.00 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2263 2995 2.293399 GTGTGTGGCCCAAACTTAAGAG 59.707 50.0 10.09 0.0 0.0 2.85 R
2789 3528 2.168521 TGGGTTAGAATCCTCTTCGCAG 59.831 50.0 0.00 0.0 32.7 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 87 6.430925 TGTGATATGTAGCTGAAGCAAAAACT 59.569 34.615 4.90 0.00 45.16 2.66
98 104 6.763610 GCAAAAACTAGACTAGCCTGATACAT 59.236 38.462 9.52 0.00 0.00 2.29
117 123 0.909133 TCTACAGGTGCCTGATGCCA 60.909 55.000 23.55 3.81 46.30 4.92
121 127 1.379443 AGGTGCCTGATGCCATGTG 60.379 57.895 0.00 0.00 40.16 3.21
132 138 4.450976 TGATGCCATGTGTGATAGGTAAC 58.549 43.478 0.00 0.00 0.00 2.50
152 162 2.036992 ACTGAAAGCAGAGACTGGACTG 59.963 50.000 0.00 0.00 45.17 3.51
167 177 2.846206 TGGACTGGCTATCACAATTCCT 59.154 45.455 0.00 0.00 0.00 3.36
169 179 2.615912 GACTGGCTATCACAATTCCTGC 59.384 50.000 0.00 0.00 0.00 4.85
282 298 6.035368 TCCTGCTATTTCTAGATGATGAGC 57.965 41.667 0.00 0.00 0.00 4.26
290 306 9.531942 CTATTTCTAGATGATGAGCATATGACC 57.468 37.037 6.97 0.00 37.34 4.02
321 346 1.277440 CGGTTGCCGTGTGTGTTAC 59.723 57.895 0.00 0.00 42.73 2.50
421 446 3.786809 CAAGTCGTCTTGCCGAGTA 57.213 52.632 9.41 0.00 43.34 2.59
565 975 4.082026 GGTAACCGAAGCAAAGACTAGGTA 60.082 45.833 0.00 0.00 32.52 3.08
665 1346 7.175347 TGTGAAGAACATTCTGCTATCTACT 57.825 36.000 1.32 0.00 37.65 2.57
666 1347 7.261325 TGTGAAGAACATTCTGCTATCTACTC 58.739 38.462 1.32 0.00 37.65 2.59
667 1348 6.699642 GTGAAGAACATTCTGCTATCTACTCC 59.300 42.308 1.32 0.00 37.65 3.85
668 1349 5.799827 AGAACATTCTGCTATCTACTCCC 57.200 43.478 0.00 0.00 35.89 4.30
669 1350 5.463154 AGAACATTCTGCTATCTACTCCCT 58.537 41.667 0.00 0.00 35.89 4.20
670 1351 5.538433 AGAACATTCTGCTATCTACTCCCTC 59.462 44.000 0.00 0.00 35.89 4.30
671 1352 4.156477 ACATTCTGCTATCTACTCCCTCC 58.844 47.826 0.00 0.00 0.00 4.30
672 1353 2.570415 TCTGCTATCTACTCCCTCCG 57.430 55.000 0.00 0.00 0.00 4.63
673 1354 1.775459 TCTGCTATCTACTCCCTCCGT 59.225 52.381 0.00 0.00 0.00 4.69
674 1355 2.175069 TCTGCTATCTACTCCCTCCGTT 59.825 50.000 0.00 0.00 0.00 4.44
675 1356 2.554893 CTGCTATCTACTCCCTCCGTTC 59.445 54.545 0.00 0.00 0.00 3.95
676 1357 1.536331 GCTATCTACTCCCTCCGTTCG 59.464 57.143 0.00 0.00 0.00 3.95
677 1358 2.152830 CTATCTACTCCCTCCGTTCGG 58.847 57.143 4.74 4.74 0.00 4.30
678 1359 0.549950 ATCTACTCCCTCCGTTCGGA 59.450 55.000 13.34 13.34 0.00 4.55
679 1360 0.329261 TCTACTCCCTCCGTTCGGAA 59.671 55.000 14.79 0.04 33.41 4.30
680 1361 1.064166 TCTACTCCCTCCGTTCGGAAT 60.064 52.381 14.79 2.09 33.41 3.01
681 1362 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
682 1363 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
683 1364 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
684 1365 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
685 1366 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
686 1367 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
687 1368 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
688 1369 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
689 1370 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
690 1371 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
691 1372 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
692 1373 3.495193 CGTTCGGAATTACTTGTCTCGA 58.505 45.455 0.00 0.00 0.00 4.04
693 1374 3.916172 CGTTCGGAATTACTTGTCTCGAA 59.084 43.478 0.00 0.00 33.66 3.71
694 1375 4.383649 CGTTCGGAATTACTTGTCTCGAAA 59.616 41.667 0.00 0.00 37.00 3.46
695 1376 5.442909 CGTTCGGAATTACTTGTCTCGAAAG 60.443 44.000 0.00 0.00 37.00 2.62
696 1377 5.130292 TCGGAATTACTTGTCTCGAAAGT 57.870 39.130 6.27 6.27 40.82 2.66
697 1378 4.921515 TCGGAATTACTTGTCTCGAAAGTG 59.078 41.667 10.54 0.00 38.32 3.16
698 1379 4.091509 CGGAATTACTTGTCTCGAAAGTGG 59.908 45.833 10.54 0.00 38.32 4.00
699 1380 5.235516 GGAATTACTTGTCTCGAAAGTGGA 58.764 41.667 10.54 1.33 38.32 4.02
700 1381 5.875359 GGAATTACTTGTCTCGAAAGTGGAT 59.125 40.000 10.54 3.30 38.32 3.41
701 1382 6.183360 GGAATTACTTGTCTCGAAAGTGGATG 60.183 42.308 10.54 0.00 38.32 3.51
702 1383 3.753294 ACTTGTCTCGAAAGTGGATGT 57.247 42.857 0.23 0.00 36.52 3.06
703 1384 4.866508 ACTTGTCTCGAAAGTGGATGTA 57.133 40.909 0.23 0.00 36.52 2.29
704 1385 5.407407 ACTTGTCTCGAAAGTGGATGTAT 57.593 39.130 0.23 0.00 36.52 2.29
705 1386 5.411781 ACTTGTCTCGAAAGTGGATGTATC 58.588 41.667 0.23 0.00 36.52 2.24
706 1387 5.186021 ACTTGTCTCGAAAGTGGATGTATCT 59.814 40.000 0.23 0.00 36.52 1.98
707 1388 6.377429 ACTTGTCTCGAAAGTGGATGTATCTA 59.623 38.462 0.23 0.00 36.52 1.98
708 1389 6.378710 TGTCTCGAAAGTGGATGTATCTAG 57.621 41.667 0.00 0.00 0.00 2.43
709 1390 6.120220 TGTCTCGAAAGTGGATGTATCTAGA 58.880 40.000 0.00 0.00 0.00 2.43
710 1391 6.602009 TGTCTCGAAAGTGGATGTATCTAGAA 59.398 38.462 0.00 0.00 0.00 2.10
711 1392 6.913673 GTCTCGAAAGTGGATGTATCTAGAAC 59.086 42.308 0.00 0.00 0.00 3.01
712 1393 6.829298 TCTCGAAAGTGGATGTATCTAGAACT 59.171 38.462 0.00 0.00 0.00 3.01
713 1394 7.991460 TCTCGAAAGTGGATGTATCTAGAACTA 59.009 37.037 0.00 0.00 0.00 2.24
714 1395 8.515695 TCGAAAGTGGATGTATCTAGAACTAA 57.484 34.615 0.00 0.00 0.00 2.24
715 1396 8.963725 TCGAAAGTGGATGTATCTAGAACTAAA 58.036 33.333 0.00 0.00 0.00 1.85
716 1397 9.582431 CGAAAGTGGATGTATCTAGAACTAAAA 57.418 33.333 0.00 0.00 0.00 1.52
721 1402 9.962783 GTGGATGTATCTAGAACTAAAATACGT 57.037 33.333 0.00 0.00 0.00 3.57
740 1421 9.698309 AAATACGTCTAGATACATCCATTTCTG 57.302 33.333 0.00 0.00 0.00 3.02
741 1422 5.533482 ACGTCTAGATACATCCATTTCTGC 58.467 41.667 0.00 0.00 0.00 4.26
742 1423 4.618912 CGTCTAGATACATCCATTTCTGCG 59.381 45.833 0.00 0.00 0.00 5.18
743 1424 5.562890 CGTCTAGATACATCCATTTCTGCGA 60.563 44.000 0.00 0.00 0.00 5.10
744 1425 5.631512 GTCTAGATACATCCATTTCTGCGAC 59.368 44.000 0.00 0.00 0.00 5.19
745 1426 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
746 1427 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
747 1428 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
748 1429 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
749 1430 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
750 1431 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
751 1432 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
752 1433 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
753 1434 5.957842 TCCATTTCTGCGACAAGTAATTT 57.042 34.783 0.00 0.00 0.00 1.82
754 1435 5.938322 TCCATTTCTGCGACAAGTAATTTC 58.062 37.500 0.00 0.00 0.00 2.17
755 1436 4.788100 CCATTTCTGCGACAAGTAATTTCG 59.212 41.667 0.00 4.05 35.82 3.46
756 1437 5.390461 CCATTTCTGCGACAAGTAATTTCGA 60.390 40.000 10.25 0.00 34.62 3.71
757 1438 5.660629 TTTCTGCGACAAGTAATTTCGAA 57.339 34.783 0.00 0.00 34.62 3.71
758 1439 4.640805 TCTGCGACAAGTAATTTCGAAC 57.359 40.909 0.00 0.00 34.62 3.95
759 1440 3.120616 TCTGCGACAAGTAATTTCGAACG 59.879 43.478 0.00 0.00 34.62 3.95
760 1441 2.156117 TGCGACAAGTAATTTCGAACGG 59.844 45.455 0.00 0.00 34.62 4.44
761 1442 2.409378 GCGACAAGTAATTTCGAACGGA 59.591 45.455 0.00 0.00 34.62 4.69
762 1443 3.481467 GCGACAAGTAATTTCGAACGGAG 60.481 47.826 0.00 0.00 34.62 4.63
763 1444 3.060363 CGACAAGTAATTTCGAACGGAGG 59.940 47.826 0.00 0.00 34.62 4.30
764 1445 3.332034 ACAAGTAATTTCGAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
765 1446 3.007182 ACAAGTAATTTCGAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
766 1447 3.521947 AGTAATTTCGAACGGAGGGAG 57.478 47.619 0.00 0.00 0.00 4.30
767 1448 2.830321 AGTAATTTCGAACGGAGGGAGT 59.170 45.455 0.00 0.00 0.00 3.85
768 1449 4.019174 AGTAATTTCGAACGGAGGGAGTA 58.981 43.478 0.00 0.00 0.00 2.59
901 1596 1.784525 GGTGACTTGTCCTCTGAACG 58.215 55.000 0.00 0.00 0.00 3.95
975 1681 5.133660 TGCATACCTTCATACCCAAATACCT 59.866 40.000 0.00 0.00 0.00 3.08
1065 1771 0.252239 TGTGCCTGCTCCTCTCCTTA 60.252 55.000 0.00 0.00 0.00 2.69
1158 1882 1.933247 CGCTTCTCTCCATCAAGGAC 58.067 55.000 0.00 0.00 43.07 3.85
1703 2433 2.095516 GCCTAAGAAGCACAGTTTCTGC 60.096 50.000 0.00 0.00 35.20 4.26
2101 2833 1.313475 CCCAGTAGTCCAGGGCCTA 59.687 63.158 5.28 0.00 35.44 3.93
2263 2995 6.808704 CCTAAGAAGCCTTACAAATTTGAAGC 59.191 38.462 24.64 18.45 33.94 3.86
2521 3253 0.460635 GATAACCGGCGCACTACCAA 60.461 55.000 10.83 0.00 0.00 3.67
2716 3448 2.586425 ACAATTCAATATCAGGCCCCG 58.414 47.619 0.00 0.00 0.00 5.73
2898 3637 0.480690 TCAAAGCTGCCCCAACCTTA 59.519 50.000 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.039973 ACATCGGAGTCTCACTTTTAACCA 59.960 41.667 1.47 0.00 0.00 3.67
1 2 4.389077 CACATCGGAGTCTCACTTTTAACC 59.611 45.833 1.47 0.00 0.00 2.85
81 87 6.477253 CCTGTAGATGTATCAGGCTAGTCTA 58.523 44.000 0.00 0.00 41.46 2.59
98 104 0.909133 TGGCATCAGGCACCTGTAGA 60.909 55.000 16.12 0.00 46.46 2.59
117 123 5.804639 TGCTTTCAGTTACCTATCACACAT 58.195 37.500 0.00 0.00 0.00 3.21
121 127 5.808030 GTCTCTGCTTTCAGTTACCTATCAC 59.192 44.000 0.00 0.00 41.10 3.06
132 138 2.612471 CCAGTCCAGTCTCTGCTTTCAG 60.612 54.545 0.00 0.00 41.67 3.02
133 139 1.345741 CCAGTCCAGTCTCTGCTTTCA 59.654 52.381 0.00 0.00 0.00 2.69
134 140 1.943507 GCCAGTCCAGTCTCTGCTTTC 60.944 57.143 0.00 0.00 0.00 2.62
135 141 0.036022 GCCAGTCCAGTCTCTGCTTT 59.964 55.000 0.00 0.00 0.00 3.51
152 162 8.428063 AGATATATAGCAGGAATTGTGATAGCC 58.572 37.037 0.07 0.00 0.00 3.93
212 223 0.732571 CGCATAACGTTCCAAGGCAT 59.267 50.000 2.82 0.00 36.87 4.40
213 224 2.167161 CGCATAACGTTCCAAGGCA 58.833 52.632 2.82 0.00 36.87 4.75
282 298 2.416747 CATGGCACGGTAGGTCATATG 58.583 52.381 0.00 0.00 0.00 1.78
565 975 2.092753 CCTATCACACAGGGCATCAGTT 60.093 50.000 0.00 0.00 0.00 3.16
617 1293 7.514127 ACATCTAGATACCAGGATATGTGGTTT 59.486 37.037 4.54 4.51 46.73 3.27
653 1333 1.775459 ACGGAGGGAGTAGATAGCAGA 59.225 52.381 0.00 0.00 0.00 4.26
664 1345 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
665 1346 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
666 1347 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
667 1348 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
668 1349 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
669 1350 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
670 1351 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
671 1352 3.495193 TCGAGACAAGTAATTCCGAACG 58.505 45.455 0.00 0.00 0.00 3.95
672 1353 5.404667 ACTTTCGAGACAAGTAATTCCGAAC 59.595 40.000 0.00 0.00 34.86 3.95
673 1354 5.404366 CACTTTCGAGACAAGTAATTCCGAA 59.596 40.000 0.82 0.00 32.48 4.30
674 1355 4.921515 CACTTTCGAGACAAGTAATTCCGA 59.078 41.667 0.82 0.00 32.48 4.55
675 1356 4.091509 CCACTTTCGAGACAAGTAATTCCG 59.908 45.833 0.82 0.00 32.48 4.30
676 1357 5.235516 TCCACTTTCGAGACAAGTAATTCC 58.764 41.667 0.82 0.00 32.48 3.01
677 1358 6.369065 ACATCCACTTTCGAGACAAGTAATTC 59.631 38.462 0.82 0.00 32.48 2.17
678 1359 6.231211 ACATCCACTTTCGAGACAAGTAATT 58.769 36.000 0.82 0.00 32.48 1.40
679 1360 5.794894 ACATCCACTTTCGAGACAAGTAAT 58.205 37.500 0.82 0.00 32.48 1.89
680 1361 5.209818 ACATCCACTTTCGAGACAAGTAA 57.790 39.130 0.82 0.00 32.48 2.24
681 1362 4.866508 ACATCCACTTTCGAGACAAGTA 57.133 40.909 0.82 0.00 32.48 2.24
682 1363 3.753294 ACATCCACTTTCGAGACAAGT 57.247 42.857 0.00 0.00 34.67 3.16
683 1364 5.655488 AGATACATCCACTTTCGAGACAAG 58.345 41.667 0.00 0.00 0.00 3.16
684 1365 5.661056 AGATACATCCACTTTCGAGACAA 57.339 39.130 0.00 0.00 0.00 3.18
685 1366 6.120220 TCTAGATACATCCACTTTCGAGACA 58.880 40.000 0.00 0.00 0.00 3.41
686 1367 6.621316 TCTAGATACATCCACTTTCGAGAC 57.379 41.667 0.00 0.00 0.00 3.36
687 1368 6.829298 AGTTCTAGATACATCCACTTTCGAGA 59.171 38.462 0.00 0.00 0.00 4.04
688 1369 7.033530 AGTTCTAGATACATCCACTTTCGAG 57.966 40.000 0.00 0.00 0.00 4.04
689 1370 8.515695 TTAGTTCTAGATACATCCACTTTCGA 57.484 34.615 0.00 0.00 0.00 3.71
690 1371 9.582431 TTTTAGTTCTAGATACATCCACTTTCG 57.418 33.333 0.00 0.00 0.00 3.46
695 1376 9.962783 ACGTATTTTAGTTCTAGATACATCCAC 57.037 33.333 0.00 0.00 0.00 4.02
714 1395 9.698309 CAGAAATGGATGTATCTAGACGTATTT 57.302 33.333 0.00 0.00 0.00 1.40
715 1396 7.815068 GCAGAAATGGATGTATCTAGACGTATT 59.185 37.037 0.00 0.00 0.00 1.89
716 1397 7.316640 GCAGAAATGGATGTATCTAGACGTAT 58.683 38.462 0.00 0.00 0.00 3.06
717 1398 6.567891 CGCAGAAATGGATGTATCTAGACGTA 60.568 42.308 0.00 0.00 0.00 3.57
718 1399 5.533482 GCAGAAATGGATGTATCTAGACGT 58.467 41.667 0.00 0.00 0.00 4.34
719 1400 4.618912 CGCAGAAATGGATGTATCTAGACG 59.381 45.833 0.00 0.00 0.00 4.18
720 1401 5.631512 GTCGCAGAAATGGATGTATCTAGAC 59.368 44.000 0.00 0.00 39.69 2.59
721 1402 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
722 1403 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
723 1404 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
724 1405 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
725 1406 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
726 1407 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
727 1408 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
728 1409 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
729 1410 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
730 1411 6.515272 AAATTACTTGTCGCAGAAATGGAT 57.485 33.333 0.00 0.00 39.69 3.41
731 1412 5.390461 CGAAATTACTTGTCGCAGAAATGGA 60.390 40.000 0.00 0.00 39.69 3.41
732 1413 4.788100 CGAAATTACTTGTCGCAGAAATGG 59.212 41.667 0.00 0.00 39.69 3.16
733 1414 5.617609 TCGAAATTACTTGTCGCAGAAATG 58.382 37.500 0.00 0.00 39.69 2.32
734 1415 5.856126 TCGAAATTACTTGTCGCAGAAAT 57.144 34.783 0.00 0.00 39.69 2.17
735 1416 5.437263 GTTCGAAATTACTTGTCGCAGAAA 58.563 37.500 0.00 0.00 39.69 2.52
736 1417 4.375606 CGTTCGAAATTACTTGTCGCAGAA 60.376 41.667 0.00 0.00 39.69 3.02
737 1418 3.120616 CGTTCGAAATTACTTGTCGCAGA 59.879 43.478 0.00 0.00 34.80 4.26
738 1419 3.395671 CGTTCGAAATTACTTGTCGCAG 58.604 45.455 0.00 0.00 34.80 5.18
739 1420 2.156117 CCGTTCGAAATTACTTGTCGCA 59.844 45.455 0.00 0.00 34.80 5.10
740 1421 2.409378 TCCGTTCGAAATTACTTGTCGC 59.591 45.455 0.00 0.00 34.80 5.19
741 1422 3.060363 CCTCCGTTCGAAATTACTTGTCG 59.940 47.826 0.00 0.00 36.12 4.35
742 1423 3.370061 CCCTCCGTTCGAAATTACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
743 1424 3.007182 TCCCTCCGTTCGAAATTACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
744 1425 3.592059 TCCCTCCGTTCGAAATTACTTG 58.408 45.455 0.00 0.00 0.00 3.16
745 1426 3.260128 ACTCCCTCCGTTCGAAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
746 1427 2.830321 ACTCCCTCCGTTCGAAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
747 1428 3.242549 ACTCCCTCCGTTCGAAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
748 1429 4.272489 TCTACTCCCTCCGTTCGAAATTA 58.728 43.478 0.00 0.00 0.00 1.40
749 1430 3.094572 TCTACTCCCTCCGTTCGAAATT 58.905 45.455 0.00 0.00 0.00 1.82
750 1431 2.731572 TCTACTCCCTCCGTTCGAAAT 58.268 47.619 0.00 0.00 0.00 2.17
751 1432 2.205022 TCTACTCCCTCCGTTCGAAA 57.795 50.000 0.00 0.00 0.00 3.46
752 1433 2.022195 CATCTACTCCCTCCGTTCGAA 58.978 52.381 0.00 0.00 0.00 3.71
753 1434 1.211212 TCATCTACTCCCTCCGTTCGA 59.789 52.381 0.00 0.00 0.00 3.71
754 1435 1.604755 CTCATCTACTCCCTCCGTTCG 59.395 57.143 0.00 0.00 0.00 3.95
755 1436 2.933573 TCTCATCTACTCCCTCCGTTC 58.066 52.381 0.00 0.00 0.00 3.95
756 1437 3.292460 CTTCTCATCTACTCCCTCCGTT 58.708 50.000 0.00 0.00 0.00 4.44
757 1438 2.423660 CCTTCTCATCTACTCCCTCCGT 60.424 54.545 0.00 0.00 0.00 4.69
758 1439 2.158593 TCCTTCTCATCTACTCCCTCCG 60.159 54.545 0.00 0.00 0.00 4.63
759 1440 3.227614 GTCCTTCTCATCTACTCCCTCC 58.772 54.545 0.00 0.00 0.00 4.30
760 1441 3.904717 TGTCCTTCTCATCTACTCCCTC 58.095 50.000 0.00 0.00 0.00 4.30
761 1442 4.479158 GATGTCCTTCTCATCTACTCCCT 58.521 47.826 0.00 0.00 38.72 4.20
762 1443 3.576550 GGATGTCCTTCTCATCTACTCCC 59.423 52.174 6.00 0.00 40.76 4.30
763 1444 4.280677 CAGGATGTCCTTCTCATCTACTCC 59.719 50.000 0.00 0.00 46.09 3.85
764 1445 4.280677 CCAGGATGTCCTTCTCATCTACTC 59.719 50.000 0.00 0.00 46.09 2.59
765 1446 4.222336 CCAGGATGTCCTTCTCATCTACT 58.778 47.826 0.00 0.00 46.09 2.57
766 1447 3.964031 ACCAGGATGTCCTTCTCATCTAC 59.036 47.826 0.00 0.00 46.09 2.59
767 1448 4.271807 ACCAGGATGTCCTTCTCATCTA 57.728 45.455 0.00 0.00 46.09 1.98
768 1449 3.127791 ACCAGGATGTCCTTCTCATCT 57.872 47.619 0.00 0.00 46.09 2.90
901 1596 5.537300 TTCTATAGTGGATCTGTCCTTGC 57.463 43.478 0.00 0.00 45.32 4.01
975 1681 4.764050 TCAGTGTGGGTTTTCTCTTACA 57.236 40.909 0.00 0.00 0.00 2.41
1065 1771 4.586235 GCTGTGGCTGGTGGTGGT 62.586 66.667 0.00 0.00 35.22 4.16
2101 2833 3.157087 CCAAGCAGGTCAGGTTTGTAAT 58.843 45.455 0.00 0.00 0.00 1.89
2263 2995 2.293399 GTGTGTGGCCCAAACTTAAGAG 59.707 50.000 10.09 0.00 0.00 2.85
2521 3253 3.056607 GCTGCCATAAATTCCAGTGTTGT 60.057 43.478 0.00 0.00 0.00 3.32
2716 3448 5.294306 TCAATGAGCATAACGAAGATGGAAC 59.706 40.000 0.00 0.00 0.00 3.62
2789 3528 2.168521 TGGGTTAGAATCCTCTTCGCAG 59.831 50.000 0.00 0.00 32.70 5.18
3166 3905 1.985159 TGTACAGATGAGCCCCTTGTT 59.015 47.619 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.