Multiple sequence alignment - TraesCS7A01G034500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G034500 chr7A 100.000 2751 0 0 1 2751 15080929 15083679 0.000000e+00 5081.0
1 TraesCS7A01G034500 chr7A 85.032 314 28 6 330 625 15033816 15034128 4.450000e-78 302.0
2 TraesCS7A01G034500 chr7A 99.091 110 1 0 2248 2357 670536415 670536306 6.010000e-47 198.0
3 TraesCS7A01G034500 chr7A 94.262 122 6 1 2246 2367 148474100 148474220 4.680000e-43 185.0
4 TraesCS7A01G034500 chr7A 88.636 88 10 0 706 793 15001054 15001141 1.040000e-19 108.0
5 TraesCS7A01G034500 chr4A 88.231 1317 105 18 947 2245 718866206 718867490 0.000000e+00 1528.0
6 TraesCS7A01G034500 chr4A 89.098 266 23 5 2355 2620 718603722 718603463 2.640000e-85 326.0
7 TraesCS7A01G034500 chr4A 92.254 142 11 0 804 945 718865936 718866077 4.650000e-48 202.0
8 TraesCS7A01G034500 chr4A 92.254 142 10 1 2102 2243 718603866 718603726 1.670000e-47 200.0
9 TraesCS7A01G034500 chr4A 97.321 112 3 0 2247 2358 537434417 537434306 1.010000e-44 191.0
10 TraesCS7A01G034500 chr4A 90.265 113 11 0 498 610 718865731 718865843 6.140000e-32 148.0
11 TraesCS7A01G034500 chr4A 89.011 91 10 0 706 796 718847901 718847991 2.240000e-21 113.0
12 TraesCS7A01G034500 chr4A 89.412 85 9 0 712 796 718613975 718613891 1.040000e-19 108.0
13 TraesCS7A01G034500 chr4A 100.000 41 0 0 2063 2103 67507859 67507899 2.940000e-10 76.8
14 TraesCS7A01G034500 chr7D 89.951 816 75 3 945 1760 16170630 16171438 0.000000e+00 1046.0
15 TraesCS7A01G034500 chr7D 94.135 665 24 4 1 651 26491825 26492488 0.000000e+00 998.0
16 TraesCS7A01G034500 chr7D 89.682 785 64 10 945 1718 26494201 26494979 0.000000e+00 985.0
17 TraesCS7A01G034500 chr7D 85.884 928 79 29 1 899 16241747 16242651 0.000000e+00 941.0
18 TraesCS7A01G034500 chr7D 89.024 656 65 4 945 1600 26498782 26499430 0.000000e+00 806.0
19 TraesCS7A01G034500 chr7D 82.326 662 104 8 1313 1972 16148788 16149438 1.850000e-156 562.0
20 TraesCS7A01G034500 chr7D 83.133 664 63 10 1 625 16217716 16218369 6.650000e-156 560.0
21 TraesCS7A01G034500 chr7D 90.260 308 27 2 641 945 26493787 26494094 1.530000e-107 399.0
22 TraesCS7A01G034500 chr7D 85.676 377 43 4 1 376 26497271 26497637 1.190000e-103 387.0
23 TraesCS7A01G034500 chr7D 90.079 252 24 1 1 251 16217061 16217312 2.640000e-85 326.0
24 TraesCS7A01G034500 chr7D 87.342 237 17 2 430 653 16360239 16360475 2.720000e-65 259.0
25 TraesCS7A01G034500 chr7D 83.630 281 22 9 381 648 16169136 16169405 2.740000e-60 243.0
26 TraesCS7A01G034500 chr7D 80.357 336 37 10 325 651 16360740 16361055 7.660000e-56 228.0
27 TraesCS7A01G034500 chr7D 82.700 237 19 14 282 501 16217311 16217542 1.010000e-44 191.0
28 TraesCS7A01G034500 chr7D 94.958 119 6 0 2245 2363 623644553 623644435 1.300000e-43 187.0
29 TraesCS7A01G034500 chr7D 88.966 145 16 0 502 646 26498277 26498421 2.180000e-41 180.0
30 TraesCS7A01G034500 chr7D 83.108 148 13 2 506 653 26500929 26500794 1.030000e-24 124.0
31 TraesCS7A01G034500 chr7D 90.123 81 7 1 696 776 16153580 16153659 1.350000e-18 104.0
32 TraesCS7A01G034500 chr7D 100.000 41 0 0 2063 2103 203534811 203534771 2.940000e-10 76.8
33 TraesCS7A01G034500 chr7D 100.000 41 0 0 2063 2103 307190031 307189991 2.940000e-10 76.8
34 TraesCS7A01G034500 chr7D 100.000 41 0 0 2063 2103 381886650 381886610 2.940000e-10 76.8
35 TraesCS7A01G034500 chr3D 85.259 848 75 30 1 823 585362361 585361539 0.000000e+00 828.0
36 TraesCS7A01G034500 chr3D 84.230 539 75 6 1313 1851 584711657 584711129 1.460000e-142 516.0
37 TraesCS7A01G034500 chr3D 91.209 91 8 0 706 796 584701829 584701739 1.030000e-24 124.0
38 TraesCS7A01G034500 chr3A 95.798 119 5 0 2245 2363 205714872 205714754 2.800000e-45 193.0
39 TraesCS7A01G034500 chr3A 95.726 117 4 1 2248 2364 550641838 550641953 1.300000e-43 187.0
40 TraesCS7A01G034500 chr6D 94.215 121 7 0 2239 2359 431047645 431047765 4.680000e-43 185.0
41 TraesCS7A01G034500 chr1A 92.969 128 7 1 2230 2357 294516643 294516518 4.680000e-43 185.0
42 TraesCS7A01G034500 chr5A 93.600 125 5 2 2246 2369 664849491 664849613 1.680000e-42 183.0
43 TraesCS7A01G034500 chr5A 100.000 41 0 0 2063 2103 19817159 19817119 2.940000e-10 76.8
44 TraesCS7A01G034500 chr6A 84.783 92 7 6 847 935 605371128 605371215 4.880000e-13 86.1
45 TraesCS7A01G034500 chrUn 100.000 41 0 0 2063 2103 257860216 257860176 2.940000e-10 76.8
46 TraesCS7A01G034500 chrUn 100.000 41 0 0 2063 2103 285743924 285743884 2.940000e-10 76.8
47 TraesCS7A01G034500 chr4D 100.000 41 0 0 2063 2103 123498045 123498005 2.940000e-10 76.8
48 TraesCS7A01G034500 chr2D 100.000 41 0 0 2063 2103 17044242 17044282 2.940000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G034500 chr7A 15080929 15083679 2750 False 5081.000000 5081 100.000000 1 2751 1 chr7A.!!$F3 2750
1 TraesCS7A01G034500 chr4A 718865731 718867490 1759 False 626.000000 1528 90.250000 498 2245 3 chr4A.!!$F3 1747
2 TraesCS7A01G034500 chr7D 16241747 16242651 904 False 941.000000 941 85.884000 1 899 1 chr7D.!!$F3 898
3 TraesCS7A01G034500 chr7D 16169136 16171438 2302 False 644.500000 1046 86.790500 381 1760 2 chr7D.!!$F4 1379
4 TraesCS7A01G034500 chr7D 26491825 26499430 7605 False 625.833333 998 89.623833 1 1718 6 chr7D.!!$F7 1717
5 TraesCS7A01G034500 chr7D 16148788 16149438 650 False 562.000000 562 82.326000 1313 1972 1 chr7D.!!$F1 659
6 TraesCS7A01G034500 chr7D 16217061 16218369 1308 False 359.000000 560 85.304000 1 625 3 chr7D.!!$F5 624
7 TraesCS7A01G034500 chr7D 16360239 16361055 816 False 243.500000 259 83.849500 325 653 2 chr7D.!!$F6 328
8 TraesCS7A01G034500 chr3D 585361539 585362361 822 True 828.000000 828 85.259000 1 823 1 chr3D.!!$R3 822
9 TraesCS7A01G034500 chr3D 584711129 584711657 528 True 516.000000 516 84.230000 1313 1851 1 chr3D.!!$R2 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
788 3626 0.537188 ACTGGCAAGTCATCTACCCG 59.463 55.0 0.0 0.0 26.77 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2488 8174 0.035439 TCGCCAGATTCCTCCAAACC 60.035 55.0 0.0 0.0 0.0 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 168 4.363999 GGTCACGGTGATTGATCTCTAAG 58.636 47.826 14.78 0.00 0.00 2.18
242 906 2.135933 GTTCTTCACAGGTTGTCGAGG 58.864 52.381 0.00 0.00 0.00 4.63
251 915 2.048222 TTGTCGAGGCCTCTTGCG 60.048 61.111 29.73 17.84 42.61 4.85
305 969 6.868339 CGCCTCCTTTTACATTCTTTCAATTT 59.132 34.615 0.00 0.00 0.00 1.82
447 1128 2.164219 CAGCCTTGTGTTGTCAAGTTGT 59.836 45.455 2.11 0.00 42.01 3.32
457 1138 8.682128 TGTGTTGTCAAGTTGTAGAAAATTTC 57.318 30.769 2.11 0.00 0.00 2.17
669 3504 1.336056 GGATACTCGGATTCGGTCTGC 60.336 57.143 0.00 0.00 36.95 4.26
724 3562 2.357075 TGTAGTGTCTACTCCAGCTCG 58.643 52.381 8.13 0.00 38.36 5.03
755 3593 4.169059 TGACATAGTATGGCTGCCAAAT 57.831 40.909 27.24 16.38 39.69 2.32
760 3598 5.421693 ACATAGTATGGCTGCCAAATTCAAA 59.578 36.000 27.24 8.08 36.95 2.69
788 3626 0.537188 ACTGGCAAGTCATCTACCCG 59.463 55.000 0.00 0.00 26.77 5.28
902 3745 5.186996 TCCATTTGAGCTTCACAAAACTC 57.813 39.130 3.47 0.00 39.95 3.01
963 4031 2.281970 CTGAAGCTGCTGGTGCCA 60.282 61.111 1.35 0.00 38.71 4.92
1024 4092 2.187073 CTTGCCATCAAGGGTCTGC 58.813 57.895 0.00 0.00 44.53 4.26
1168 4236 0.594602 CGTGGAGTACCTTGACGACA 59.405 55.000 0.00 0.00 35.88 4.35
1340 4412 0.524604 GCGCCGTTCTGTTTTGTTGT 60.525 50.000 0.00 0.00 0.00 3.32
1402 4474 2.795110 GCAGCAGGAGAGAGCCGAT 61.795 63.158 0.00 0.00 0.00 4.18
1404 4476 0.313672 CAGCAGGAGAGAGCCGATAC 59.686 60.000 0.00 0.00 0.00 2.24
1405 4477 0.106469 AGCAGGAGAGAGCCGATACA 60.106 55.000 0.00 0.00 0.00 2.29
1525 4603 4.521062 GGGCTGCTCGACATCGCT 62.521 66.667 0.00 0.00 39.60 4.93
1526 4604 2.413351 GGCTGCTCGACATCGCTA 59.587 61.111 0.00 0.00 39.60 4.26
1543 4621 1.896465 GCTATCGGGTGCTATCTTCCT 59.104 52.381 0.00 0.00 0.00 3.36
1667 4745 2.734723 TCGTTGCGCTGCTGACTC 60.735 61.111 9.73 0.00 0.00 3.36
1696 4774 1.867363 AGGTGGAGGAGTACATCACC 58.133 55.000 8.59 8.59 32.54 4.02
1697 4775 1.362932 AGGTGGAGGAGTACATCACCT 59.637 52.381 12.36 12.36 39.76 4.00
1770 4848 3.199677 AGAGATCGTGTCGTCTCCTTAG 58.800 50.000 13.47 0.00 41.36 2.18
1772 4850 2.937799 AGATCGTGTCGTCTCCTTAGTC 59.062 50.000 0.00 0.00 0.00 2.59
1774 4852 0.795085 CGTGTCGTCTCCTTAGTCGT 59.205 55.000 0.00 0.00 35.99 4.34
1776 4854 2.413112 CGTGTCGTCTCCTTAGTCGTTA 59.587 50.000 0.00 0.00 35.99 3.18
1803 4886 1.285023 CAGTTGCTGTGCTTGCCTC 59.715 57.895 0.00 0.00 0.00 4.70
1808 4891 0.110295 TGCTGTGCTTGCCTCCTAAA 59.890 50.000 0.00 0.00 0.00 1.85
1848 4935 2.609459 AGTTGTTGAGCTCGTTGAACTG 59.391 45.455 9.64 0.00 0.00 3.16
1852 4939 1.581934 TGAGCTCGTTGAACTGTTGG 58.418 50.000 9.64 0.00 0.00 3.77
1862 4949 4.668289 GTTGAACTGTTGGTACTTGGTTG 58.332 43.478 0.00 0.00 0.00 3.77
1912 4999 4.494035 CGCACGCATACACTGTATTTGATT 60.494 41.667 0.00 0.00 0.00 2.57
1940 5035 4.589252 TGTTGTTTCGTGAATAAACCGTG 58.411 39.130 0.00 0.00 36.26 4.94
1978 5073 5.045651 TGCATCTCTTTATCCAGGTCTCAAA 60.046 40.000 0.00 0.00 0.00 2.69
1979 5074 5.882557 GCATCTCTTTATCCAGGTCTCAAAA 59.117 40.000 0.00 0.00 0.00 2.44
1981 5076 7.627300 GCATCTCTTTATCCAGGTCTCAAAAAC 60.627 40.741 0.00 0.00 0.00 2.43
1999 5094 7.706159 TCAAAAACGACACTAGTTGTACTCTA 58.294 34.615 0.00 0.00 41.57 2.43
2000 5095 7.645340 TCAAAAACGACACTAGTTGTACTCTAC 59.355 37.037 0.00 0.00 41.57 2.59
2027 5131 9.927668 ATATTAGGTTTGTCTTTTTGGATTGTG 57.072 29.630 0.00 0.00 0.00 3.33
2036 5140 5.531287 GTCTTTTTGGATTGTGTAGTCACCT 59.469 40.000 0.00 0.00 43.26 4.00
2043 5147 6.406370 TGGATTGTGTAGTCACCTTATTCTG 58.594 40.000 0.00 0.00 43.26 3.02
2049 5807 6.266786 TGTGTAGTCACCTTATTCTGTTCTCA 59.733 38.462 0.00 0.00 43.26 3.27
2071 5829 9.308000 TCTCAAAAATGTAATGTAAGGAATGGT 57.692 29.630 0.00 0.00 0.00 3.55
2074 5832 9.487790 CAAAAATGTAATGTAAGGAATGGTTGT 57.512 29.630 0.00 0.00 0.00 3.32
2078 5836 7.328277 TGTAATGTAAGGAATGGTTGTATGC 57.672 36.000 0.00 0.00 0.00 3.14
2083 5841 1.677576 AGGAATGGTTGTATGCATGCG 59.322 47.619 14.09 0.00 0.00 4.73
2085 5843 0.102844 AATGGTTGTATGCATGCGCC 59.897 50.000 14.09 14.59 37.32 6.53
2086 5844 2.024588 GGTTGTATGCATGCGCCG 59.975 61.111 14.09 0.00 37.32 6.46
2088 5846 2.124942 TTGTATGCATGCGCCGGA 60.125 55.556 14.09 0.00 37.32 5.14
2089 5847 2.468670 TTGTATGCATGCGCCGGAC 61.469 57.895 14.09 6.74 37.32 4.79
2099 5857 4.423764 CGCCGGACGCCTATAAAA 57.576 55.556 5.05 0.00 33.16 1.52
2100 5858 2.680429 CGCCGGACGCCTATAAAAA 58.320 52.632 5.05 0.00 33.16 1.94
2120 5878 4.495911 AAAGAAGCTTGCTTTGTAGAGC 57.504 40.909 17.55 0.00 43.00 4.09
2132 5890 4.622695 GCTTTGTAGAGCAGGTCTGAAGAT 60.623 45.833 12.66 0.00 42.25 2.40
2134 5892 3.701664 TGTAGAGCAGGTCTGAAGATGA 58.298 45.455 12.66 0.00 36.64 2.92
2139 5897 2.158928 AGCAGGTCTGAAGATGATGCTC 60.159 50.000 1.65 0.00 36.12 4.26
2148 5906 3.181457 TGAAGATGATGCTCCTGGATGTC 60.181 47.826 0.00 0.00 0.00 3.06
2155 5913 1.730487 CTCCTGGATGTCGAGACGG 59.270 63.158 0.00 0.00 0.00 4.79
2156 5914 1.729470 CTCCTGGATGTCGAGACGGG 61.729 65.000 0.00 0.00 0.00 5.28
2177 5935 1.369839 GGTGAAGCTAGCCCGAAAGC 61.370 60.000 12.13 0.00 39.08 3.51
2180 5938 1.078143 AAGCTAGCCCGAAAGCCAG 60.078 57.895 12.13 0.00 39.64 4.85
2198 5956 2.095059 CCAGCAACACAAATAGCAGGAC 60.095 50.000 0.00 0.00 35.91 3.85
2200 5958 1.804151 GCAACACAAATAGCAGGACGA 59.196 47.619 0.00 0.00 0.00 4.20
2245 6003 5.240183 CCGCTTTTCATCATCCATAATGACT 59.760 40.000 0.00 0.00 47.00 3.41
2246 6004 6.427853 CCGCTTTTCATCATCCATAATGACTA 59.572 38.462 0.00 0.00 47.00 2.59
2247 6005 7.293745 CGCTTTTCATCATCCATAATGACTAC 58.706 38.462 0.00 0.00 47.00 2.73
2253 6011 8.354711 TCATCATCCATAATGACTACTACTCC 57.645 38.462 0.00 0.00 47.00 3.85
2260 6018 3.666345 ATGACTACTACTCCCTCCGTT 57.334 47.619 0.00 0.00 0.00 4.44
2263 6021 1.307097 CTACTACTCCCTCCGTTCCG 58.693 60.000 0.00 0.00 0.00 4.30
2266 6024 1.341778 ACTACTCCCTCCGTTCCGAAT 60.342 52.381 0.00 0.00 0.00 3.34
2268 6026 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
2275 6033 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
2276 6034 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
2278 6036 2.222508 CGTTCCGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 35.93 5.18
2279 6037 2.004583 TCCGAATTACTTGTCGCAGG 57.995 50.000 0.00 0.00 35.93 4.85
2281 6039 2.492881 TCCGAATTACTTGTCGCAGGTA 59.507 45.455 0.00 0.00 35.93 3.08
2283 6041 4.338964 TCCGAATTACTTGTCGCAGGTATA 59.661 41.667 3.46 0.00 35.93 1.47
2284 6042 4.680110 CCGAATTACTTGTCGCAGGTATAG 59.320 45.833 3.46 0.00 35.93 1.31
2285 6043 5.506815 CCGAATTACTTGTCGCAGGTATAGA 60.507 44.000 3.46 0.00 35.93 1.98
2287 6045 6.088217 CGAATTACTTGTCGCAGGTATAGATG 59.912 42.308 3.46 0.00 0.00 2.90
2288 6046 5.847111 TTACTTGTCGCAGGTATAGATGT 57.153 39.130 3.46 0.00 0.00 3.06
2291 6049 6.015027 ACTTGTCGCAGGTATAGATGTATC 57.985 41.667 0.00 0.00 0.00 2.24
2292 6050 5.770663 ACTTGTCGCAGGTATAGATGTATCT 59.229 40.000 0.00 0.00 40.86 1.98
2293 6051 6.940867 ACTTGTCGCAGGTATAGATGTATCTA 59.059 38.462 4.22 4.22 43.00 1.98
2300 6058 9.278978 CGCAGGTATAGATGTATCTAGATGTAT 57.721 37.037 15.79 9.11 42.20 2.29
2328 6086 7.706281 AGTTCTAGATACATTCATTTCTGCG 57.294 36.000 0.00 0.00 0.00 5.18
2330 6108 7.436673 AGTTCTAGATACATTCATTTCTGCGAC 59.563 37.037 0.00 0.00 0.00 5.19
2331 6109 5.915196 TCTAGATACATTCATTTCTGCGACG 59.085 40.000 0.00 0.00 0.00 5.12
2334 6112 2.688507 ACATTCATTTCTGCGACGAGT 58.311 42.857 0.00 0.00 0.00 4.18
2336 6114 4.242475 ACATTCATTTCTGCGACGAGTAA 58.758 39.130 0.00 0.00 0.00 2.24
2342 6120 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
2350 6128 2.564062 ACGAGTAATTTGGAACGGAGGA 59.436 45.455 0.00 0.00 0.00 3.71
2356 6134 4.635699 AATTTGGAACGGAGGAAGTAGT 57.364 40.909 0.00 0.00 0.00 2.73
2358 6136 4.796038 TTTGGAACGGAGGAAGTAGTAG 57.204 45.455 0.00 0.00 0.00 2.57
2359 6137 3.446442 TGGAACGGAGGAAGTAGTAGT 57.554 47.619 0.00 0.00 0.00 2.73
2360 6138 3.350833 TGGAACGGAGGAAGTAGTAGTC 58.649 50.000 0.00 0.00 0.00 2.59
2361 6139 3.009916 TGGAACGGAGGAAGTAGTAGTCT 59.990 47.826 0.00 0.00 0.00 3.24
2362 6140 4.225942 TGGAACGGAGGAAGTAGTAGTCTA 59.774 45.833 0.00 0.00 0.00 2.59
2363 6141 4.815846 GGAACGGAGGAAGTAGTAGTCTAG 59.184 50.000 0.00 0.00 0.00 2.43
2365 6143 3.455543 ACGGAGGAAGTAGTAGTCTAGCT 59.544 47.826 0.00 0.00 0.00 3.32
2367 6145 5.130145 ACGGAGGAAGTAGTAGTCTAGCTAA 59.870 44.000 0.00 0.00 0.00 3.09
2368 6146 6.183361 ACGGAGGAAGTAGTAGTCTAGCTAAT 60.183 42.308 0.00 0.00 0.00 1.73
2369 6147 6.148150 CGGAGGAAGTAGTAGTCTAGCTAATG 59.852 46.154 0.00 0.00 0.00 1.90
2370 6148 6.999871 GGAGGAAGTAGTAGTCTAGCTAATGT 59.000 42.308 0.00 0.00 0.00 2.71
2371 6149 7.040961 GGAGGAAGTAGTAGTCTAGCTAATGTG 60.041 44.444 0.00 0.00 0.00 3.21
2372 6150 7.348033 AGGAAGTAGTAGTCTAGCTAATGTGT 58.652 38.462 0.00 0.00 0.00 3.72
2373 6151 7.835181 AGGAAGTAGTAGTCTAGCTAATGTGTT 59.165 37.037 0.00 0.00 0.00 3.32
2374 6152 7.916450 GGAAGTAGTAGTCTAGCTAATGTGTTG 59.084 40.741 0.00 0.00 0.00 3.33
2376 6154 7.987649 AGTAGTAGTCTAGCTAATGTGTTGAC 58.012 38.462 0.00 0.00 0.00 3.18
2377 6155 6.835819 AGTAGTCTAGCTAATGTGTTGACA 57.164 37.500 9.04 0.00 36.22 3.58
2378 6156 7.411486 AGTAGTCTAGCTAATGTGTTGACAT 57.589 36.000 9.04 0.00 45.24 3.06
2379 6157 7.261325 AGTAGTCTAGCTAATGTGTTGACATG 58.739 38.462 9.04 0.00 42.30 3.21
2380 6158 4.872691 AGTCTAGCTAATGTGTTGACATGC 59.127 41.667 9.04 0.00 42.30 4.06
2381 6159 4.631377 GTCTAGCTAATGTGTTGACATGCA 59.369 41.667 0.00 0.00 42.30 3.96
2383 6161 5.882000 TCTAGCTAATGTGTTGACATGCATT 59.118 36.000 0.00 0.00 42.30 3.56
2384 6162 7.011389 GTCTAGCTAATGTGTTGACATGCATTA 59.989 37.037 0.00 0.00 42.30 1.90
2385 6163 6.127810 AGCTAATGTGTTGACATGCATTAG 57.872 37.500 19.74 19.74 46.45 1.73
2388 6166 5.963176 AATGTGTTGACATGCATTAGACA 57.037 34.783 0.00 0.00 42.30 3.41
2389 6167 5.963176 ATGTGTTGACATGCATTAGACAA 57.037 34.783 0.00 0.00 41.52 3.18
2391 6169 4.161333 GTGTTGACATGCATTAGACAAGC 58.839 43.478 0.00 0.00 0.00 4.01
2392 6170 3.120234 TGTTGACATGCATTAGACAAGCG 60.120 43.478 0.00 0.00 0.00 4.68
2393 6171 2.971307 TGACATGCATTAGACAAGCGA 58.029 42.857 0.00 0.00 0.00 4.93
2394 6172 2.672874 TGACATGCATTAGACAAGCGAC 59.327 45.455 0.00 0.00 0.00 5.19
2396 6174 2.674852 ACATGCATTAGACAAGCGACAG 59.325 45.455 0.00 0.00 0.00 3.51
2397 6175 1.725641 TGCATTAGACAAGCGACAGG 58.274 50.000 0.00 0.00 0.00 4.00
2398 6176 1.275010 TGCATTAGACAAGCGACAGGA 59.725 47.619 0.00 0.00 0.00 3.86
2399 6177 2.289382 TGCATTAGACAAGCGACAGGAA 60.289 45.455 0.00 0.00 0.00 3.36
2400 6178 2.094417 GCATTAGACAAGCGACAGGAAC 59.906 50.000 0.00 0.00 0.00 3.62
2402 6180 2.433868 TAGACAAGCGACAGGAACAC 57.566 50.000 0.00 0.00 0.00 3.32
2404 6182 1.070758 AGACAAGCGACAGGAACACAT 59.929 47.619 0.00 0.00 0.00 3.21
2405 6183 1.873591 GACAAGCGACAGGAACACATT 59.126 47.619 0.00 0.00 0.00 2.71
2406 6184 1.603802 ACAAGCGACAGGAACACATTG 59.396 47.619 0.00 0.00 0.00 2.82
2407 6185 1.872952 CAAGCGACAGGAACACATTGA 59.127 47.619 0.00 0.00 0.00 2.57
2408 6186 2.254546 AGCGACAGGAACACATTGAA 57.745 45.000 0.00 0.00 0.00 2.69
2409 6187 2.146342 AGCGACAGGAACACATTGAAG 58.854 47.619 0.00 0.00 0.00 3.02
2411 6189 2.744202 GCGACAGGAACACATTGAAGAT 59.256 45.455 0.00 0.00 0.00 2.40
2412 6190 3.189287 GCGACAGGAACACATTGAAGATT 59.811 43.478 0.00 0.00 0.00 2.40
2414 6192 5.149273 CGACAGGAACACATTGAAGATTTG 58.851 41.667 0.00 0.00 0.00 2.32
2415 6193 5.277974 CGACAGGAACACATTGAAGATTTGT 60.278 40.000 0.00 0.00 0.00 2.83
2416 6194 6.076981 ACAGGAACACATTGAAGATTTGTC 57.923 37.500 0.00 0.00 0.00 3.18
2417 6195 5.593909 ACAGGAACACATTGAAGATTTGTCA 59.406 36.000 0.00 0.00 0.00 3.58
2418 6196 6.147581 CAGGAACACATTGAAGATTTGTCAG 58.852 40.000 0.00 0.00 0.00 3.51
2419 6197 5.829924 AGGAACACATTGAAGATTTGTCAGT 59.170 36.000 0.00 0.00 0.00 3.41
2420 6198 6.016777 AGGAACACATTGAAGATTTGTCAGTC 60.017 38.462 0.00 0.00 0.00 3.51
2422 6200 7.173218 GGAACACATTGAAGATTTGTCAGTCTA 59.827 37.037 0.00 0.00 0.00 2.59
2423 6201 7.664082 ACACATTGAAGATTTGTCAGTCTAG 57.336 36.000 0.00 0.00 0.00 2.43
2424 6202 7.220030 ACACATTGAAGATTTGTCAGTCTAGT 58.780 34.615 0.00 0.00 0.00 2.57
2425 6203 7.172190 ACACATTGAAGATTTGTCAGTCTAGTG 59.828 37.037 0.00 0.00 0.00 2.74
2426 6204 6.652481 ACATTGAAGATTTGTCAGTCTAGTGG 59.348 38.462 0.00 0.00 0.00 4.00
2427 6205 5.808366 TGAAGATTTGTCAGTCTAGTGGT 57.192 39.130 0.00 0.00 0.00 4.16
2429 6207 4.543590 AGATTTGTCAGTCTAGTGGTGG 57.456 45.455 0.00 0.00 0.00 4.61
2430 6208 3.904339 AGATTTGTCAGTCTAGTGGTGGT 59.096 43.478 0.00 0.00 0.00 4.16
2431 6209 5.084519 AGATTTGTCAGTCTAGTGGTGGTA 58.915 41.667 0.00 0.00 0.00 3.25
2432 6210 4.866508 TTTGTCAGTCTAGTGGTGGTAG 57.133 45.455 0.00 0.00 0.00 3.18
2434 6212 3.687125 TGTCAGTCTAGTGGTGGTAGAG 58.313 50.000 0.00 0.00 0.00 2.43
2435 6213 3.329814 TGTCAGTCTAGTGGTGGTAGAGA 59.670 47.826 0.00 0.00 0.00 3.10
2438 6216 4.018324 TCAGTCTAGTGGTGGTAGAGATGT 60.018 45.833 0.00 0.00 0.00 3.06
2439 6217 5.191124 TCAGTCTAGTGGTGGTAGAGATGTA 59.809 44.000 0.00 0.00 0.00 2.29
2440 6218 5.529430 CAGTCTAGTGGTGGTAGAGATGTAG 59.471 48.000 0.00 0.00 0.00 2.74
2441 6219 5.429109 AGTCTAGTGGTGGTAGAGATGTAGA 59.571 44.000 0.00 0.00 0.00 2.59
2442 6220 5.761234 GTCTAGTGGTGGTAGAGATGTAGAG 59.239 48.000 0.00 0.00 0.00 2.43
2443 6221 4.594675 AGTGGTGGTAGAGATGTAGAGT 57.405 45.455 0.00 0.00 0.00 3.24
2445 6223 4.951094 AGTGGTGGTAGAGATGTAGAGTTC 59.049 45.833 0.00 0.00 0.00 3.01
2446 6224 4.705507 GTGGTGGTAGAGATGTAGAGTTCA 59.294 45.833 0.00 0.00 0.00 3.18
2447 6225 4.705507 TGGTGGTAGAGATGTAGAGTTCAC 59.294 45.833 0.00 0.00 0.00 3.18
2448 6226 4.098196 GGTGGTAGAGATGTAGAGTTCACC 59.902 50.000 0.00 0.00 34.97 4.02
2449 6227 4.705507 GTGGTAGAGATGTAGAGTTCACCA 59.294 45.833 0.00 0.00 0.00 4.17
2450 6228 5.361285 GTGGTAGAGATGTAGAGTTCACCAT 59.639 44.000 0.00 0.00 36.07 3.55
2451 6229 5.360999 TGGTAGAGATGTAGAGTTCACCATG 59.639 44.000 0.00 0.00 0.00 3.66
2452 6230 5.221342 GGTAGAGATGTAGAGTTCACCATGG 60.221 48.000 11.19 11.19 0.00 3.66
2453 6231 4.357325 AGAGATGTAGAGTTCACCATGGT 58.643 43.478 13.00 13.00 0.00 3.55
2454 6232 4.161189 AGAGATGTAGAGTTCACCATGGTG 59.839 45.833 35.00 35.00 46.64 4.17
2458 6236 1.074775 GAGTTCACCATGGTGGGCA 59.925 57.895 38.12 22.90 43.37 5.36
2460 6238 0.612732 AGTTCACCATGGTGGGCATG 60.613 55.000 38.12 17.22 43.37 4.06
2480 8166 4.195225 TGGTGGACCAAAACTTGTTTTC 57.805 40.909 8.33 0.00 44.35 2.29
2481 8167 3.578716 TGGTGGACCAAAACTTGTTTTCA 59.421 39.130 8.33 2.19 44.35 2.69
2483 8169 4.570369 GGTGGACCAAAACTTGTTTTCATG 59.430 41.667 8.33 4.07 35.64 3.07
2484 8170 4.570369 GTGGACCAAAACTTGTTTTCATGG 59.430 41.667 8.33 10.21 32.99 3.66
2485 8171 4.126437 GGACCAAAACTTGTTTTCATGGG 58.874 43.478 15.55 12.75 31.54 4.00
2486 8172 3.540617 ACCAAAACTTGTTTTCATGGGC 58.459 40.909 15.55 0.00 31.54 5.36
2488 8174 3.560896 CCAAAACTTGTTTTCATGGGCTG 59.439 43.478 8.33 0.00 0.00 4.85
2489 8175 3.473923 AAACTTGTTTTCATGGGCTGG 57.526 42.857 0.00 0.00 0.00 4.85
2491 8177 2.397597 ACTTGTTTTCATGGGCTGGTT 58.602 42.857 0.00 0.00 0.00 3.67
2493 8179 2.906691 TGTTTTCATGGGCTGGTTTG 57.093 45.000 0.00 0.00 0.00 2.93
2494 8180 1.415659 TGTTTTCATGGGCTGGTTTGG 59.584 47.619 0.00 0.00 0.00 3.28
2496 8182 1.631405 TTTCATGGGCTGGTTTGGAG 58.369 50.000 0.00 0.00 0.00 3.86
2497 8183 0.251742 TTCATGGGCTGGTTTGGAGG 60.252 55.000 0.00 0.00 0.00 4.30
2498 8184 1.139498 TCATGGGCTGGTTTGGAGGA 61.139 55.000 0.00 0.00 0.00 3.71
2500 8186 0.712380 ATGGGCTGGTTTGGAGGAAT 59.288 50.000 0.00 0.00 0.00 3.01
2501 8187 0.039618 TGGGCTGGTTTGGAGGAATC 59.960 55.000 0.00 0.00 0.00 2.52
2502 8188 0.332972 GGGCTGGTTTGGAGGAATCT 59.667 55.000 0.00 0.00 0.00 2.40
2503 8189 1.467920 GGCTGGTTTGGAGGAATCTG 58.532 55.000 0.00 0.00 0.00 2.90
2504 8190 1.467920 GCTGGTTTGGAGGAATCTGG 58.532 55.000 0.00 0.00 0.00 3.86
2505 8191 1.467920 CTGGTTTGGAGGAATCTGGC 58.532 55.000 0.00 0.00 0.00 4.85
2506 8192 0.322456 TGGTTTGGAGGAATCTGGCG 60.322 55.000 0.00 0.00 0.00 5.69
2507 8193 0.035439 GGTTTGGAGGAATCTGGCGA 60.035 55.000 0.00 0.00 0.00 5.54
2508 8194 1.373570 GTTTGGAGGAATCTGGCGAG 58.626 55.000 0.00 0.00 0.00 5.03
2509 8195 0.253044 TTTGGAGGAATCTGGCGAGG 59.747 55.000 0.00 0.00 0.00 4.63
2521 8207 2.281345 GCGAGGCCAGCTATGCAT 60.281 61.111 14.97 3.79 0.00 3.96
2522 8208 1.895707 GCGAGGCCAGCTATGCATT 60.896 57.895 3.54 0.00 0.00 3.56
2523 8209 0.603707 GCGAGGCCAGCTATGCATTA 60.604 55.000 3.54 0.00 0.00 1.90
2524 8210 1.151668 CGAGGCCAGCTATGCATTAC 58.848 55.000 3.54 0.00 0.00 1.89
2525 8211 1.151668 GAGGCCAGCTATGCATTACG 58.848 55.000 3.54 0.00 0.00 3.18
2526 8212 0.469917 AGGCCAGCTATGCATTACGT 59.530 50.000 3.54 0.00 0.00 3.57
2527 8213 0.868406 GGCCAGCTATGCATTACGTC 59.132 55.000 3.54 0.00 0.00 4.34
2528 8214 1.581934 GCCAGCTATGCATTACGTCA 58.418 50.000 3.54 0.00 0.00 4.35
2529 8215 1.528586 GCCAGCTATGCATTACGTCAG 59.471 52.381 3.54 0.00 0.00 3.51
2530 8216 1.528586 CCAGCTATGCATTACGTCAGC 59.471 52.381 3.54 6.65 0.00 4.26
2531 8217 1.528586 CAGCTATGCATTACGTCAGCC 59.471 52.381 3.54 0.00 0.00 4.85
2532 8218 0.868406 GCTATGCATTACGTCAGCCC 59.132 55.000 3.54 0.00 0.00 5.19
2537 8223 2.285083 TGCATTACGTCAGCCCATAAC 58.715 47.619 0.00 0.00 0.00 1.89
2538 8224 2.285083 GCATTACGTCAGCCCATAACA 58.715 47.619 0.00 0.00 0.00 2.41
2539 8225 2.680841 GCATTACGTCAGCCCATAACAA 59.319 45.455 0.00 0.00 0.00 2.83
2540 8226 3.486875 GCATTACGTCAGCCCATAACAAC 60.487 47.826 0.00 0.00 0.00 3.32
2541 8227 3.688694 TTACGTCAGCCCATAACAACT 57.311 42.857 0.00 0.00 0.00 3.16
2543 8229 1.346395 ACGTCAGCCCATAACAACTCA 59.654 47.619 0.00 0.00 0.00 3.41
2544 8230 2.027192 ACGTCAGCCCATAACAACTCAT 60.027 45.455 0.00 0.00 0.00 2.90
2545 8231 3.009723 CGTCAGCCCATAACAACTCATT 58.990 45.455 0.00 0.00 0.00 2.57
2546 8232 3.063997 CGTCAGCCCATAACAACTCATTC 59.936 47.826 0.00 0.00 0.00 2.67
2548 8234 4.458989 GTCAGCCCATAACAACTCATTCAA 59.541 41.667 0.00 0.00 0.00 2.69
2549 8235 4.701651 TCAGCCCATAACAACTCATTCAAG 59.298 41.667 0.00 0.00 0.00 3.02
2550 8236 4.019174 AGCCCATAACAACTCATTCAAGG 58.981 43.478 0.00 0.00 0.00 3.61
2551 8237 3.429410 GCCCATAACAACTCATTCAAGGC 60.429 47.826 0.00 0.00 0.00 4.35
2552 8238 3.763360 CCCATAACAACTCATTCAAGGCA 59.237 43.478 0.00 0.00 0.00 4.75
2553 8239 4.380867 CCCATAACAACTCATTCAAGGCAC 60.381 45.833 0.00 0.00 0.00 5.01
2554 8240 4.218200 CCATAACAACTCATTCAAGGCACA 59.782 41.667 0.00 0.00 0.00 4.57
2556 8242 2.233271 ACAACTCATTCAAGGCACAGG 58.767 47.619 0.00 0.00 0.00 4.00
2557 8243 1.068055 CAACTCATTCAAGGCACAGGC 60.068 52.381 0.00 0.00 40.13 4.85
2558 8244 0.111061 ACTCATTCAAGGCACAGGCA 59.889 50.000 0.00 0.00 43.71 4.75
2559 8245 1.272313 ACTCATTCAAGGCACAGGCAT 60.272 47.619 0.00 0.00 43.71 4.40
2560 8246 1.134367 CTCATTCAAGGCACAGGCATG 59.866 52.381 0.00 0.00 43.71 4.06
2561 8247 1.179152 CATTCAAGGCACAGGCATGA 58.821 50.000 4.84 0.00 43.71 3.07
2563 8249 0.895100 TTCAAGGCACAGGCATGACC 60.895 55.000 4.84 6.19 43.71 4.02
2573 8259 2.290847 GGCATGACCTCTCCTCACA 58.709 57.895 0.00 0.00 34.51 3.58
2576 8262 1.277557 GCATGACCTCTCCTCACAACT 59.722 52.381 0.00 0.00 0.00 3.16
2578 8264 0.681733 TGACCTCTCCTCACAACTGC 59.318 55.000 0.00 0.00 0.00 4.40
2580 8266 1.070758 GACCTCTCCTCACAACTGCAA 59.929 52.381 0.00 0.00 0.00 4.08
2581 8267 1.490490 ACCTCTCCTCACAACTGCAAA 59.510 47.619 0.00 0.00 0.00 3.68
2582 8268 2.149578 CCTCTCCTCACAACTGCAAAG 58.850 52.381 0.00 0.00 0.00 2.77
2583 8269 1.534595 CTCTCCTCACAACTGCAAAGC 59.465 52.381 0.00 0.00 0.00 3.51
2584 8270 1.141657 TCTCCTCACAACTGCAAAGCT 59.858 47.619 0.00 0.00 0.00 3.74
2594 8280 3.272031 GCAAAGCTGCCTCCTGTC 58.728 61.111 0.00 0.00 43.26 3.51
2595 8281 2.684843 GCAAAGCTGCCTCCTGTCG 61.685 63.158 0.00 0.00 43.26 4.35
2596 8282 2.037136 CAAAGCTGCCTCCTGTCGG 61.037 63.158 0.00 0.00 0.00 4.79
2597 8283 2.217038 AAAGCTGCCTCCTGTCGGA 61.217 57.895 0.00 0.00 37.82 4.55
2598 8284 1.768684 AAAGCTGCCTCCTGTCGGAA 61.769 55.000 0.00 0.00 39.29 4.30
2599 8285 2.125350 GCTGCCTCCTGTCGGAAG 60.125 66.667 0.00 0.00 39.29 3.46
2600 8286 2.125350 CTGCCTCCTGTCGGAAGC 60.125 66.667 0.00 0.00 45.29 3.86
2602 8288 2.435059 GCCTCCTGTCGGAAGCAC 60.435 66.667 0.00 0.00 44.59 4.40
2603 8289 2.266055 CCTCCTGTCGGAAGCACC 59.734 66.667 0.00 0.00 39.29 5.01
2617 8303 4.452733 CACCGCCCCTTCCGTCTC 62.453 72.222 0.00 0.00 0.00 3.36
2620 8306 3.839432 CGCCCCTTCCGTCTCCTC 61.839 72.222 0.00 0.00 0.00 3.71
2621 8307 2.683933 GCCCCTTCCGTCTCCTCA 60.684 66.667 0.00 0.00 0.00 3.86
2623 8309 2.359967 CCCCTTCCGTCTCCTCACC 61.360 68.421 0.00 0.00 0.00 4.02
2625 8311 2.711922 CCTTCCGTCTCCTCACCGG 61.712 68.421 0.00 0.00 43.03 5.28
2626 8312 3.358076 CTTCCGTCTCCTCACCGGC 62.358 68.421 0.00 0.00 41.46 6.13
2627 8313 3.881019 TTCCGTCTCCTCACCGGCT 62.881 63.158 0.00 0.00 41.46 5.52
2628 8314 2.439701 CCGTCTCCTCACCGGCTA 60.440 66.667 0.00 0.00 34.62 3.93
2629 8315 1.828660 CCGTCTCCTCACCGGCTAT 60.829 63.158 0.00 0.00 34.62 2.97
2630 8316 1.655329 CGTCTCCTCACCGGCTATC 59.345 63.158 0.00 0.00 0.00 2.08
2631 8317 1.797211 CGTCTCCTCACCGGCTATCC 61.797 65.000 0.00 0.00 0.00 2.59
2653 8339 2.743928 CCACCGGCAGAGCAGAAC 60.744 66.667 0.00 0.00 0.00 3.01
2654 8340 3.114616 CACCGGCAGAGCAGAACG 61.115 66.667 0.00 0.00 0.00 3.95
2696 8382 2.125350 GCAGGAGGCTCGGTTGAG 60.125 66.667 8.69 0.00 45.49 3.02
2697 8383 2.581354 CAGGAGGCTCGGTTGAGG 59.419 66.667 8.69 0.00 42.79 3.86
2698 8384 1.984570 CAGGAGGCTCGGTTGAGGA 60.985 63.158 8.69 0.00 42.79 3.71
2699 8385 1.229209 AGGAGGCTCGGTTGAGGAA 60.229 57.895 8.69 0.00 42.79 3.36
2700 8386 1.219393 GGAGGCTCGGTTGAGGAAG 59.781 63.158 8.69 0.00 42.79 3.46
2701 8387 1.448717 GAGGCTCGGTTGAGGAAGC 60.449 63.158 0.00 0.00 42.79 3.86
2706 8392 3.423154 CGGTTGAGGAAGCGTGCC 61.423 66.667 0.00 0.00 45.80 5.01
2707 8393 3.423154 GGTTGAGGAAGCGTGCCG 61.423 66.667 0.00 0.00 0.00 5.69
2729 8415 4.626081 CGCAGGCTAATCCCCCGG 62.626 72.222 0.00 0.00 34.51 5.73
2730 8416 4.956932 GCAGGCTAATCCCCCGGC 62.957 72.222 0.00 0.00 35.29 6.13
2731 8417 4.271016 CAGGCTAATCCCCCGGCC 62.271 72.222 0.00 0.00 44.38 6.13
2735 8421 4.250305 CTAATCCCCCGGCCGGTG 62.250 72.222 40.52 31.68 0.00 4.94
2748 8434 2.359850 CGGTGCAAGCAAGCCCTA 60.360 61.111 0.00 0.00 0.00 3.53
2749 8435 2.690778 CGGTGCAAGCAAGCCCTAC 61.691 63.158 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 5.833131 ACACAATAGAGGAAAACACCACAAT 59.167 36.000 0.00 0.00 0.00 2.71
242 906 1.014564 AAAGTAGCGACGCAAGAGGC 61.015 55.000 23.70 5.01 43.62 4.70
251 915 2.579013 GCTGTCACAAAAGTAGCGAC 57.421 50.000 0.00 0.00 0.00 5.19
409 1090 4.436332 AGGCTGCTTCAAACTTTTCTTTG 58.564 39.130 0.00 0.00 33.14 2.77
447 1128 5.826586 TGCTTCAACTTGCGAAATTTTCTA 58.173 33.333 7.50 0.00 0.00 2.10
457 1138 0.791983 CTGCGATGCTTCAACTTGCG 60.792 55.000 0.08 0.00 0.00 4.85
669 3504 2.158385 ACACTATCTAGCCAGAGAGGGG 60.158 54.545 10.81 3.95 46.04 4.79
755 3593 2.942804 TGCCAGTCAAGGTGATTTGAA 58.057 42.857 0.00 0.00 38.69 2.69
780 3618 1.847798 TTGGGCAGCAACGGGTAGAT 61.848 55.000 0.00 0.00 0.00 1.98
783 3621 2.033448 CTTGGGCAGCAACGGGTA 59.967 61.111 0.00 0.00 0.00 3.69
802 3640 2.612212 ACAAAAACGACTGTAGCACCTG 59.388 45.455 0.00 0.00 0.00 4.00
902 3745 1.268899 AGGAGAACACGTTGGAGTACG 59.731 52.381 0.00 0.00 46.52 3.67
917 3760 2.887783 GACACACACTTGAGAGAGGAGA 59.112 50.000 0.00 0.00 0.00 3.71
1024 4092 1.527844 CGGGGAGGTAGTCGTAGGG 60.528 68.421 0.00 0.00 0.00 3.53
1137 4205 1.035923 ACTCCACGATGATGAGCGAT 58.964 50.000 0.00 0.00 34.27 4.58
1299 4371 3.558321 CCCGTGGGATTCAACTTCACTTA 60.558 47.826 0.00 0.00 37.50 2.24
1302 4374 1.165270 CCCGTGGGATTCAACTTCAC 58.835 55.000 0.00 0.00 37.50 3.18
1340 4412 0.389817 CACGAAGGGAACATCTGCGA 60.390 55.000 0.00 0.00 36.80 5.10
1377 4449 3.306595 CTCTCCTGCTGCTTCGCCA 62.307 63.158 0.00 0.00 0.00 5.69
1402 4474 1.938585 CCAAGGTCTCCTCCACTGTA 58.061 55.000 0.00 0.00 30.89 2.74
1404 4476 1.298014 GCCAAGGTCTCCTCCACTG 59.702 63.158 0.00 0.00 30.89 3.66
1405 4477 2.286523 CGCCAAGGTCTCCTCCACT 61.287 63.158 0.00 0.00 30.89 4.00
1444 4516 4.400961 GAGCACTCCGCCAAGGCT 62.401 66.667 9.73 0.00 44.04 4.58
1486 4564 0.600255 GGGATACACCGCCGATGAAG 60.600 60.000 0.00 0.00 40.11 3.02
1490 4568 2.561956 CGAGGGATACACCGCCGAT 61.562 63.158 0.00 0.00 40.11 4.18
1525 4603 2.632996 CCAAGGAAGATAGCACCCGATA 59.367 50.000 0.00 0.00 0.00 2.92
1526 4604 1.417890 CCAAGGAAGATAGCACCCGAT 59.582 52.381 0.00 0.00 0.00 4.18
1543 4621 0.461339 GGCCTATCGCTTCGAACCAA 60.461 55.000 0.00 0.00 39.99 3.67
1652 4730 3.782244 CGGAGTCAGCAGCGCAAC 61.782 66.667 11.47 0.00 0.00 4.17
1667 4745 2.347490 CTCCACCTTGTCCACCGG 59.653 66.667 0.00 0.00 0.00 5.28
1696 4774 2.420022 CCACTTTGGATAAAGCACCGAG 59.580 50.000 0.00 0.00 45.72 4.63
1697 4775 2.432444 CCACTTTGGATAAAGCACCGA 58.568 47.619 0.00 0.00 45.72 4.69
1770 4848 3.432252 AGCAACTGCAATGTACTAACGAC 59.568 43.478 4.22 0.00 45.16 4.34
1772 4850 3.186409 ACAGCAACTGCAATGTACTAACG 59.814 43.478 4.22 0.00 45.16 3.18
1774 4852 3.058293 GCACAGCAACTGCAATGTACTAA 60.058 43.478 4.22 0.00 45.16 2.24
1776 4854 1.267806 GCACAGCAACTGCAATGTACT 59.732 47.619 4.22 0.00 45.16 2.73
1803 4886 5.008217 TCGTGAAAACACCAACTCATTTAGG 59.992 40.000 0.00 0.00 0.00 2.69
1808 4891 3.541632 ACTCGTGAAAACACCAACTCAT 58.458 40.909 0.00 0.00 0.00 2.90
1835 4922 2.102588 AGTACCAACAGTTCAACGAGCT 59.897 45.455 0.00 0.00 0.00 4.09
1848 4935 5.121105 AGACACTAACAACCAAGTACCAAC 58.879 41.667 0.00 0.00 0.00 3.77
1852 4939 4.614946 ACGAGACACTAACAACCAAGTAC 58.385 43.478 0.00 0.00 0.00 2.73
1862 4949 2.093310 TCGATGACGACGAGACACTAAC 59.907 50.000 0.00 0.00 43.81 2.34
1896 4983 7.928307 ACAGCTCAAATCAAATACAGTGTAT 57.072 32.000 10.10 10.10 0.00 2.29
1898 4985 6.039717 ACAACAGCTCAAATCAAATACAGTGT 59.960 34.615 0.00 0.00 0.00 3.55
1912 4999 5.743026 TTATTCACGAAACAACAGCTCAA 57.257 34.783 0.00 0.00 0.00 3.02
1965 5060 3.139077 GTGTCGTTTTTGAGACCTGGAT 58.861 45.455 0.00 0.00 36.61 3.41
1968 5063 4.369182 ACTAGTGTCGTTTTTGAGACCTG 58.631 43.478 0.00 0.00 36.61 4.00
1978 5073 6.624352 TGTAGAGTACAACTAGTGTCGTTT 57.376 37.500 0.00 0.00 41.98 3.60
1979 5074 6.814506 ATGTAGAGTACAACTAGTGTCGTT 57.185 37.500 0.00 0.00 42.76 3.85
1999 5094 9.927668 CAATCCAAAAAGACAAACCTAATATGT 57.072 29.630 0.00 0.00 0.00 2.29
2000 5095 9.927668 ACAATCCAAAAAGACAAACCTAATATG 57.072 29.630 0.00 0.00 0.00 1.78
2027 5131 8.603242 TTTTGAGAACAGAATAAGGTGACTAC 57.397 34.615 0.00 0.00 42.68 2.73
2064 5822 1.865248 GCGCATGCATACAACCATTCC 60.865 52.381 19.57 0.00 42.15 3.01
2067 5825 1.735360 GGCGCATGCATACAACCAT 59.265 52.632 19.57 0.00 45.35 3.55
2071 5829 2.124942 TCCGGCGCATGCATACAA 60.125 55.556 19.57 0.00 45.35 2.41
2098 5856 4.864633 GCTCTACAAAGCAAGCTTCTTTT 58.135 39.130 16.39 9.17 42.05 2.27
2099 5857 4.495911 GCTCTACAAAGCAAGCTTCTTT 57.504 40.909 7.88 14.37 42.05 2.52
2114 5872 4.619973 CATCATCTTCAGACCTGCTCTAC 58.380 47.826 0.00 0.00 0.00 2.59
2120 5878 2.435069 AGGAGCATCATCTTCAGACCTG 59.565 50.000 0.00 0.00 36.25 4.00
2123 5881 2.433604 TCCAGGAGCATCATCTTCAGAC 59.566 50.000 0.00 0.00 36.25 3.51
2126 5884 2.775960 ACATCCAGGAGCATCATCTTCA 59.224 45.455 0.00 0.00 36.25 3.02
2132 5890 0.749049 CTCGACATCCAGGAGCATCA 59.251 55.000 0.00 0.00 36.25 3.07
2134 5892 0.749649 GTCTCGACATCCAGGAGCAT 59.250 55.000 0.00 0.00 0.00 3.79
2139 5897 2.786495 CCCCGTCTCGACATCCAGG 61.786 68.421 0.00 0.00 0.00 4.45
2155 5913 4.176752 CGGGCTAGCTTCACCCCC 62.177 72.222 15.72 4.19 40.86 5.40
2156 5914 2.193087 TTTCGGGCTAGCTTCACCCC 62.193 60.000 15.72 4.97 40.86 4.95
2169 5927 1.733402 TTGTGTTGCTGGCTTTCGGG 61.733 55.000 0.00 0.00 0.00 5.14
2177 5935 2.095059 GTCCTGCTATTTGTGTTGCTGG 60.095 50.000 0.00 0.00 43.05 4.85
2180 5938 1.804151 TCGTCCTGCTATTTGTGTTGC 59.196 47.619 0.00 0.00 0.00 4.17
2198 5956 5.804473 GGACATATAGCAATCTCATCAGTCG 59.196 44.000 0.00 0.00 0.00 4.18
2200 5958 5.718146 CGGACATATAGCAATCTCATCAGT 58.282 41.667 0.00 0.00 0.00 3.41
2205 5963 4.607293 AAGCGGACATATAGCAATCTCA 57.393 40.909 0.00 0.00 0.00 3.27
2208 5966 5.673337 TGAAAAGCGGACATATAGCAATC 57.327 39.130 0.00 0.00 0.00 2.67
2260 6018 1.274167 ACCTGCGACAAGTAATTCGGA 59.726 47.619 0.00 0.00 35.73 4.55
2263 6021 6.924060 ACATCTATACCTGCGACAAGTAATTC 59.076 38.462 0.00 0.00 0.00 2.17
2266 6024 5.847111 ACATCTATACCTGCGACAAGTAA 57.153 39.130 0.00 0.00 0.00 2.24
2268 6026 5.770663 AGATACATCTATACCTGCGACAAGT 59.229 40.000 0.00 0.00 34.85 3.16
2303 6061 8.630037 TCGCAGAAATGAATGTATCTAGAACTA 58.370 33.333 0.00 0.00 0.00 2.24
2305 6063 7.559845 GTCGCAGAAATGAATGTATCTAGAAC 58.440 38.462 0.00 0.00 39.69 3.01
2306 6064 6.417930 CGTCGCAGAAATGAATGTATCTAGAA 59.582 38.462 0.00 0.00 39.69 2.10
2307 6065 5.915196 CGTCGCAGAAATGAATGTATCTAGA 59.085 40.000 0.00 0.00 39.69 2.43
2308 6066 5.915196 TCGTCGCAGAAATGAATGTATCTAG 59.085 40.000 0.00 0.00 39.69 2.43
2309 6067 5.827666 TCGTCGCAGAAATGAATGTATCTA 58.172 37.500 0.00 0.00 39.69 1.98
2311 6069 4.504461 ACTCGTCGCAGAAATGAATGTATC 59.496 41.667 0.00 0.00 39.69 2.24
2313 6071 3.845178 ACTCGTCGCAGAAATGAATGTA 58.155 40.909 0.00 0.00 39.69 2.29
2314 6072 2.688507 ACTCGTCGCAGAAATGAATGT 58.311 42.857 0.00 0.00 39.69 2.71
2315 6073 4.840401 TTACTCGTCGCAGAAATGAATG 57.160 40.909 0.00 0.00 39.69 2.67
2316 6074 6.250819 CAAATTACTCGTCGCAGAAATGAAT 58.749 36.000 0.00 0.00 39.69 2.57
2317 6075 5.390461 CCAAATTACTCGTCGCAGAAATGAA 60.390 40.000 0.00 0.00 39.69 2.57
2318 6076 4.092821 CCAAATTACTCGTCGCAGAAATGA 59.907 41.667 0.00 0.00 39.69 2.57
2319 6077 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
2320 6078 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
2321 6079 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
2322 6080 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
2324 6082 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
2326 6084 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
2327 6085 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2328 6086 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2330 6108 3.241067 TCCTCCGTTCCAAATTACTCG 57.759 47.619 0.00 0.00 0.00 4.18
2331 6109 4.576879 ACTTCCTCCGTTCCAAATTACTC 58.423 43.478 0.00 0.00 0.00 2.59
2334 6112 5.750352 ACTACTTCCTCCGTTCCAAATTA 57.250 39.130 0.00 0.00 0.00 1.40
2336 6114 4.776308 ACTACTACTTCCTCCGTTCCAAAT 59.224 41.667 0.00 0.00 0.00 2.32
2342 6120 4.080413 AGCTAGACTACTACTTCCTCCGTT 60.080 45.833 0.00 0.00 0.00 4.44
2350 6128 8.460428 GTCAACACATTAGCTAGACTACTACTT 58.540 37.037 0.00 0.00 0.00 2.24
2356 6134 6.042777 GCATGTCAACACATTAGCTAGACTA 58.957 40.000 0.00 0.00 40.66 2.59
2358 6136 4.631377 TGCATGTCAACACATTAGCTAGAC 59.369 41.667 0.00 0.00 40.66 2.59
2359 6137 4.831107 TGCATGTCAACACATTAGCTAGA 58.169 39.130 0.00 0.00 40.66 2.43
2360 6138 5.746307 ATGCATGTCAACACATTAGCTAG 57.254 39.130 0.00 0.00 40.66 3.42
2361 6139 7.011389 GTCTAATGCATGTCAACACATTAGCTA 59.989 37.037 19.10 0.00 45.93 3.32
2362 6140 5.882000 TCTAATGCATGTCAACACATTAGCT 59.118 36.000 19.10 0.00 45.93 3.32
2363 6141 5.967674 GTCTAATGCATGTCAACACATTAGC 59.032 40.000 19.10 14.00 45.93 3.09
2365 6143 7.446001 TTGTCTAATGCATGTCAACACATTA 57.554 32.000 0.00 0.00 40.66 1.90
2367 6145 5.620654 GCTTGTCTAATGCATGTCAACACAT 60.621 40.000 0.00 0.00 44.72 3.21
2368 6146 4.320421 GCTTGTCTAATGCATGTCAACACA 60.320 41.667 0.00 0.00 36.78 3.72
2369 6147 4.161333 GCTTGTCTAATGCATGTCAACAC 58.839 43.478 0.00 0.00 0.00 3.32
2370 6148 3.120234 CGCTTGTCTAATGCATGTCAACA 60.120 43.478 0.00 0.00 0.00 3.33
2371 6149 3.125146 TCGCTTGTCTAATGCATGTCAAC 59.875 43.478 0.00 0.00 0.00 3.18
2372 6150 3.125146 GTCGCTTGTCTAATGCATGTCAA 59.875 43.478 0.00 3.16 0.00 3.18
2373 6151 2.672874 GTCGCTTGTCTAATGCATGTCA 59.327 45.455 0.00 0.00 0.00 3.58
2374 6152 2.672874 TGTCGCTTGTCTAATGCATGTC 59.327 45.455 0.00 0.00 0.00 3.06
2376 6154 2.031314 CCTGTCGCTTGTCTAATGCATG 59.969 50.000 0.00 0.00 0.00 4.06
2377 6155 2.093500 TCCTGTCGCTTGTCTAATGCAT 60.093 45.455 0.00 0.00 0.00 3.96
2378 6156 1.275010 TCCTGTCGCTTGTCTAATGCA 59.725 47.619 0.00 0.00 0.00 3.96
2379 6157 2.010145 TCCTGTCGCTTGTCTAATGC 57.990 50.000 0.00 0.00 0.00 3.56
2380 6158 3.123621 GTGTTCCTGTCGCTTGTCTAATG 59.876 47.826 0.00 0.00 0.00 1.90
2381 6159 3.244078 TGTGTTCCTGTCGCTTGTCTAAT 60.244 43.478 0.00 0.00 0.00 1.73
2383 6161 1.684450 TGTGTTCCTGTCGCTTGTCTA 59.316 47.619 0.00 0.00 0.00 2.59
2384 6162 0.464036 TGTGTTCCTGTCGCTTGTCT 59.536 50.000 0.00 0.00 0.00 3.41
2385 6163 1.512926 ATGTGTTCCTGTCGCTTGTC 58.487 50.000 0.00 0.00 0.00 3.18
2388 6166 2.254546 TCAATGTGTTCCTGTCGCTT 57.745 45.000 0.00 0.00 0.00 4.68
2389 6167 2.146342 CTTCAATGTGTTCCTGTCGCT 58.854 47.619 0.00 0.00 0.00 4.93
2391 6169 5.149273 CAAATCTTCAATGTGTTCCTGTCG 58.851 41.667 0.00 0.00 0.00 4.35
2392 6170 6.076981 ACAAATCTTCAATGTGTTCCTGTC 57.923 37.500 0.00 0.00 0.00 3.51
2393 6171 5.593909 TGACAAATCTTCAATGTGTTCCTGT 59.406 36.000 0.00 0.00 0.00 4.00
2394 6172 6.075762 TGACAAATCTTCAATGTGTTCCTG 57.924 37.500 0.00 0.00 0.00 3.86
2396 6174 6.016777 AGACTGACAAATCTTCAATGTGTTCC 60.017 38.462 0.00 0.00 0.00 3.62
2397 6175 6.963796 AGACTGACAAATCTTCAATGTGTTC 58.036 36.000 0.00 0.00 0.00 3.18
2398 6176 6.949352 AGACTGACAAATCTTCAATGTGTT 57.051 33.333 0.00 0.00 0.00 3.32
2399 6177 7.172190 CACTAGACTGACAAATCTTCAATGTGT 59.828 37.037 0.00 0.00 0.00 3.72
2400 6178 7.360691 CCACTAGACTGACAAATCTTCAATGTG 60.361 40.741 0.00 0.00 0.00 3.21
2402 6180 6.652481 ACCACTAGACTGACAAATCTTCAATG 59.348 38.462 0.00 0.00 0.00 2.82
2404 6182 5.991606 CACCACTAGACTGACAAATCTTCAA 59.008 40.000 0.00 0.00 0.00 2.69
2405 6183 5.511373 CCACCACTAGACTGACAAATCTTCA 60.511 44.000 0.00 0.00 0.00 3.02
2406 6184 4.932200 CCACCACTAGACTGACAAATCTTC 59.068 45.833 0.00 0.00 0.00 2.87
2407 6185 4.348168 ACCACCACTAGACTGACAAATCTT 59.652 41.667 0.00 0.00 0.00 2.40
2408 6186 3.904339 ACCACCACTAGACTGACAAATCT 59.096 43.478 0.00 0.00 0.00 2.40
2409 6187 4.273148 ACCACCACTAGACTGACAAATC 57.727 45.455 0.00 0.00 0.00 2.17
2411 6189 4.476297 TCTACCACCACTAGACTGACAAA 58.524 43.478 0.00 0.00 0.00 2.83
2412 6190 4.079970 CTCTACCACCACTAGACTGACAA 58.920 47.826 0.00 0.00 0.00 3.18
2414 6192 3.952931 TCTCTACCACCACTAGACTGAC 58.047 50.000 0.00 0.00 0.00 3.51
2415 6193 4.018324 ACATCTCTACCACCACTAGACTGA 60.018 45.833 0.00 0.00 0.00 3.41
2416 6194 4.274147 ACATCTCTACCACCACTAGACTG 58.726 47.826 0.00 0.00 0.00 3.51
2417 6195 4.594675 ACATCTCTACCACCACTAGACT 57.405 45.455 0.00 0.00 0.00 3.24
2418 6196 5.682659 TCTACATCTCTACCACCACTAGAC 58.317 45.833 0.00 0.00 0.00 2.59
2419 6197 5.429109 ACTCTACATCTCTACCACCACTAGA 59.571 44.000 0.00 0.00 0.00 2.43
2420 6198 5.686753 ACTCTACATCTCTACCACCACTAG 58.313 45.833 0.00 0.00 0.00 2.57
2422 6200 4.594675 ACTCTACATCTCTACCACCACT 57.405 45.455 0.00 0.00 0.00 4.00
2423 6201 4.705507 TGAACTCTACATCTCTACCACCAC 59.294 45.833 0.00 0.00 0.00 4.16
2424 6202 4.705507 GTGAACTCTACATCTCTACCACCA 59.294 45.833 0.00 0.00 0.00 4.17
2425 6203 4.098196 GGTGAACTCTACATCTCTACCACC 59.902 50.000 0.00 0.00 34.43 4.61
2426 6204 4.705507 TGGTGAACTCTACATCTCTACCAC 59.294 45.833 0.00 0.00 31.31 4.16
2427 6205 4.930696 TGGTGAACTCTACATCTCTACCA 58.069 43.478 0.00 0.00 33.65 3.25
2429 6207 5.361285 ACCATGGTGAACTCTACATCTCTAC 59.639 44.000 18.99 0.00 0.00 2.59
2430 6208 5.519808 ACCATGGTGAACTCTACATCTCTA 58.480 41.667 18.99 0.00 0.00 2.43
2431 6209 4.357325 ACCATGGTGAACTCTACATCTCT 58.643 43.478 18.99 0.00 0.00 3.10
2432 6210 4.744795 ACCATGGTGAACTCTACATCTC 57.255 45.455 18.99 0.00 0.00 2.75
2449 6227 2.360191 GTCCACCATGCCCACCAT 59.640 61.111 0.00 0.00 33.39 3.55
2450 6228 3.978193 GGTCCACCATGCCCACCA 61.978 66.667 0.00 0.00 35.64 4.17
2451 6229 3.521765 TTGGTCCACCATGCCCACC 62.522 63.158 0.00 0.00 46.97 4.61
2452 6230 1.118356 TTTTGGTCCACCATGCCCAC 61.118 55.000 0.00 0.00 46.97 4.61
2453 6231 1.118356 GTTTTGGTCCACCATGCCCA 61.118 55.000 0.00 0.00 46.97 5.36
2454 6232 0.831711 AGTTTTGGTCCACCATGCCC 60.832 55.000 0.00 0.00 46.97 5.36
2458 6236 4.223923 TGAAAACAAGTTTTGGTCCACCAT 59.776 37.500 14.97 0.00 46.97 3.55
2460 6238 4.195225 TGAAAACAAGTTTTGGTCCACC 57.805 40.909 14.97 0.85 42.26 4.61
2470 8156 2.397597 ACCAGCCCATGAAAACAAGTT 58.602 42.857 0.00 0.00 0.00 2.66
2473 8159 2.158842 CCAAACCAGCCCATGAAAACAA 60.159 45.455 0.00 0.00 0.00 2.83
2476 8162 1.969923 CTCCAAACCAGCCCATGAAAA 59.030 47.619 0.00 0.00 0.00 2.29
2477 8163 1.631405 CTCCAAACCAGCCCATGAAA 58.369 50.000 0.00 0.00 0.00 2.69
2478 8164 0.251742 CCTCCAAACCAGCCCATGAA 60.252 55.000 0.00 0.00 0.00 2.57
2479 8165 1.139498 TCCTCCAAACCAGCCCATGA 61.139 55.000 0.00 0.00 0.00 3.07
2480 8166 0.251742 TTCCTCCAAACCAGCCCATG 60.252 55.000 0.00 0.00 0.00 3.66
2481 8167 0.712380 ATTCCTCCAAACCAGCCCAT 59.288 50.000 0.00 0.00 0.00 4.00
2483 8169 0.332972 AGATTCCTCCAAACCAGCCC 59.667 55.000 0.00 0.00 0.00 5.19
2484 8170 1.467920 CAGATTCCTCCAAACCAGCC 58.532 55.000 0.00 0.00 0.00 4.85
2485 8171 1.467920 CCAGATTCCTCCAAACCAGC 58.532 55.000 0.00 0.00 0.00 4.85
2486 8172 1.467920 GCCAGATTCCTCCAAACCAG 58.532 55.000 0.00 0.00 0.00 4.00
2488 8174 0.035439 TCGCCAGATTCCTCCAAACC 60.035 55.000 0.00 0.00 0.00 3.27
2489 8175 1.373570 CTCGCCAGATTCCTCCAAAC 58.626 55.000 0.00 0.00 0.00 2.93
2491 8177 1.907739 CCTCGCCAGATTCCTCCAA 59.092 57.895 0.00 0.00 0.00 3.53
2493 8179 2.110006 GCCTCGCCAGATTCCTCC 59.890 66.667 0.00 0.00 0.00 4.30
2504 8190 0.603707 TAATGCATAGCTGGCCTCGC 60.604 55.000 3.32 6.93 0.00 5.03
2505 8191 1.151668 GTAATGCATAGCTGGCCTCG 58.848 55.000 3.32 0.00 0.00 4.63
2506 8192 1.151668 CGTAATGCATAGCTGGCCTC 58.848 55.000 3.32 0.00 0.00 4.70
2507 8193 0.469917 ACGTAATGCATAGCTGGCCT 59.530 50.000 3.32 0.00 0.00 5.19
2508 8194 0.868406 GACGTAATGCATAGCTGGCC 59.132 55.000 0.00 0.00 0.00 5.36
2509 8195 1.528586 CTGACGTAATGCATAGCTGGC 59.471 52.381 0.00 0.00 0.00 4.85
2512 8198 1.541233 GGGCTGACGTAATGCATAGCT 60.541 52.381 14.73 0.00 0.00 3.32
2513 8199 0.868406 GGGCTGACGTAATGCATAGC 59.132 55.000 0.00 3.67 0.00 2.97
2514 8200 2.238942 TGGGCTGACGTAATGCATAG 57.761 50.000 0.00 0.00 0.00 2.23
2515 8201 2.928801 ATGGGCTGACGTAATGCATA 57.071 45.000 0.00 0.00 0.00 3.14
2516 8202 2.878406 GTTATGGGCTGACGTAATGCAT 59.122 45.455 0.00 0.00 0.00 3.96
2517 8203 2.285083 GTTATGGGCTGACGTAATGCA 58.715 47.619 8.73 0.00 0.00 3.96
2518 8204 2.285083 TGTTATGGGCTGACGTAATGC 58.715 47.619 0.00 0.00 0.00 3.56
2519 8205 3.938963 AGTTGTTATGGGCTGACGTAATG 59.061 43.478 0.00 0.00 0.00 1.90
2520 8206 4.189231 GAGTTGTTATGGGCTGACGTAAT 58.811 43.478 0.00 0.00 0.00 1.89
2521 8207 3.007074 TGAGTTGTTATGGGCTGACGTAA 59.993 43.478 0.00 0.00 0.00 3.18
2522 8208 2.563620 TGAGTTGTTATGGGCTGACGTA 59.436 45.455 0.00 0.00 0.00 3.57
2523 8209 1.346395 TGAGTTGTTATGGGCTGACGT 59.654 47.619 0.00 0.00 0.00 4.34
2524 8210 2.093306 TGAGTTGTTATGGGCTGACG 57.907 50.000 0.00 0.00 0.00 4.35
2525 8211 4.009675 TGAATGAGTTGTTATGGGCTGAC 58.990 43.478 0.00 0.00 0.00 3.51
2526 8212 4.299586 TGAATGAGTTGTTATGGGCTGA 57.700 40.909 0.00 0.00 0.00 4.26
2527 8213 4.142315 CCTTGAATGAGTTGTTATGGGCTG 60.142 45.833 0.00 0.00 0.00 4.85
2528 8214 4.019174 CCTTGAATGAGTTGTTATGGGCT 58.981 43.478 0.00 0.00 0.00 5.19
2529 8215 3.429410 GCCTTGAATGAGTTGTTATGGGC 60.429 47.826 0.00 0.00 0.00 5.36
2530 8216 3.763360 TGCCTTGAATGAGTTGTTATGGG 59.237 43.478 0.00 0.00 0.00 4.00
2531 8217 4.218200 TGTGCCTTGAATGAGTTGTTATGG 59.782 41.667 0.00 0.00 0.00 2.74
2532 8218 5.375417 TGTGCCTTGAATGAGTTGTTATG 57.625 39.130 0.00 0.00 0.00 1.90
2537 8223 1.068055 GCCTGTGCCTTGAATGAGTTG 60.068 52.381 0.00 0.00 0.00 3.16
2538 8224 1.251251 GCCTGTGCCTTGAATGAGTT 58.749 50.000 0.00 0.00 0.00 3.01
2539 8225 0.111061 TGCCTGTGCCTTGAATGAGT 59.889 50.000 0.00 0.00 36.33 3.41
2540 8226 1.134367 CATGCCTGTGCCTTGAATGAG 59.866 52.381 0.00 0.00 36.33 2.90
2541 8227 1.179152 CATGCCTGTGCCTTGAATGA 58.821 50.000 0.00 0.00 36.33 2.57
2543 8229 1.180029 GTCATGCCTGTGCCTTGAAT 58.820 50.000 0.00 0.00 36.33 2.57
2544 8230 0.895100 GGTCATGCCTGTGCCTTGAA 60.895 55.000 0.00 0.00 36.33 2.69
2545 8231 1.303561 GGTCATGCCTGTGCCTTGA 60.304 57.895 0.00 0.00 36.33 3.02
2546 8232 3.281240 GGTCATGCCTGTGCCTTG 58.719 61.111 0.00 0.00 36.33 3.61
2556 8242 1.277557 AGTTGTGAGGAGAGGTCATGC 59.722 52.381 0.00 0.00 0.00 4.06
2557 8243 2.934364 GCAGTTGTGAGGAGAGGTCATG 60.934 54.545 0.00 0.00 0.00 3.07
2558 8244 1.277557 GCAGTTGTGAGGAGAGGTCAT 59.722 52.381 0.00 0.00 0.00 3.06
2559 8245 0.681733 GCAGTTGTGAGGAGAGGTCA 59.318 55.000 0.00 0.00 0.00 4.02
2560 8246 0.681733 TGCAGTTGTGAGGAGAGGTC 59.318 55.000 0.00 0.00 0.00 3.85
2561 8247 1.131638 TTGCAGTTGTGAGGAGAGGT 58.868 50.000 0.00 0.00 0.00 3.85
2563 8249 1.534595 GCTTTGCAGTTGTGAGGAGAG 59.465 52.381 0.00 0.00 0.00 3.20
2564 8250 1.141657 AGCTTTGCAGTTGTGAGGAGA 59.858 47.619 0.00 0.00 0.00 3.71
2565 8251 1.266175 CAGCTTTGCAGTTGTGAGGAG 59.734 52.381 0.00 0.00 0.00 3.69
2566 8252 1.311859 CAGCTTTGCAGTTGTGAGGA 58.688 50.000 0.00 0.00 0.00 3.71
2567 8253 0.318445 GCAGCTTTGCAGTTGTGAGG 60.318 55.000 0.00 0.00 33.82 3.86
2568 8254 0.318445 GGCAGCTTTGCAGTTGTGAG 60.318 55.000 0.00 0.00 33.82 3.51
2572 8258 1.177256 AGGAGGCAGCTTTGCAGTTG 61.177 55.000 0.00 0.00 36.33 3.16
2573 8259 1.152368 AGGAGGCAGCTTTGCAGTT 59.848 52.632 0.00 0.00 36.33 3.16
2576 8262 1.601759 GACAGGAGGCAGCTTTGCA 60.602 57.895 0.00 0.00 36.33 4.08
2578 8264 2.037136 CCGACAGGAGGCAGCTTTG 61.037 63.158 0.00 0.00 41.02 2.77
2580 8266 2.604686 TCCGACAGGAGGCAGCTT 60.605 61.111 0.00 0.00 42.75 3.74
2600 8286 4.452733 GAGACGGAAGGGGCGGTG 62.453 72.222 0.00 0.00 0.00 4.94
2603 8289 3.839432 GAGGAGACGGAAGGGGCG 61.839 72.222 0.00 0.00 0.00 6.13
2606 8292 2.711922 CGGTGAGGAGACGGAAGGG 61.712 68.421 0.00 0.00 0.00 3.95
2607 8293 2.885861 CGGTGAGGAGACGGAAGG 59.114 66.667 0.00 0.00 0.00 3.46
2612 8298 1.655329 GATAGCCGGTGAGGAGACG 59.345 63.158 1.90 0.00 45.00 4.18
2613 8299 2.042800 GGATAGCCGGTGAGGAGAC 58.957 63.158 1.90 0.00 45.00 3.36
2614 8300 4.601042 GGATAGCCGGTGAGGAGA 57.399 61.111 1.90 0.00 45.00 3.71
2637 8323 3.114616 CGTTCTGCTCTGCCGGTG 61.115 66.667 1.90 0.00 0.00 4.94
2642 8328 3.044305 AACCGCGTTCTGCTCTGC 61.044 61.111 4.92 0.00 43.27 4.26
2644 8330 1.956170 CACAACCGCGTTCTGCTCT 60.956 57.895 4.92 0.00 43.27 4.09
2646 8332 2.972505 CCACAACCGCGTTCTGCT 60.973 61.111 4.92 0.00 43.27 4.24
2647 8333 4.683334 GCCACAACCGCGTTCTGC 62.683 66.667 4.92 0.00 41.47 4.26
2648 8334 4.368808 CGCCACAACCGCGTTCTG 62.369 66.667 4.92 1.08 44.55 3.02
2669 8355 3.004951 CCTCCTGCTTCCAGCCAT 58.995 61.111 0.00 0.00 41.51 4.40
2670 8356 4.039092 GCCTCCTGCTTCCAGCCA 62.039 66.667 0.00 0.00 41.51 4.75
2679 8365 2.125350 CTCAACCGAGCCTCCTGC 60.125 66.667 0.00 0.00 41.71 4.85
2680 8366 1.544825 TTCCTCAACCGAGCCTCCTG 61.545 60.000 0.00 0.00 38.00 3.86
2682 8368 1.219393 CTTCCTCAACCGAGCCTCC 59.781 63.158 0.00 0.00 38.00 4.30
2683 8369 1.448717 GCTTCCTCAACCGAGCCTC 60.449 63.158 0.00 0.00 38.00 4.70
2684 8370 2.665603 GCTTCCTCAACCGAGCCT 59.334 61.111 0.00 0.00 38.00 4.58
2686 8372 2.048127 ACGCTTCCTCAACCGAGC 60.048 61.111 0.00 0.00 38.00 5.03
2687 8373 2.383527 GCACGCTTCCTCAACCGAG 61.384 63.158 0.00 0.00 39.16 4.63
2688 8374 2.357034 GCACGCTTCCTCAACCGA 60.357 61.111 0.00 0.00 0.00 4.69
2712 8398 4.626081 CCGGGGGATTAGCCTGCG 62.626 72.222 0.00 0.00 36.66 5.18
2713 8399 4.956932 GCCGGGGGATTAGCCTGC 62.957 72.222 2.18 0.00 36.66 4.85
2714 8400 4.271016 GGCCGGGGGATTAGCCTG 62.271 72.222 2.18 0.00 42.34 4.85
2718 8404 4.250305 CACCGGCCGGGGGATTAG 62.250 72.222 44.99 22.24 44.62 1.73
2730 8416 3.918253 TAGGGCTTGCTTGCACCGG 62.918 63.158 0.00 0.00 36.97 5.28
2731 8417 2.359850 TAGGGCTTGCTTGCACCG 60.360 61.111 0.00 0.00 36.97 4.94
2732 8418 2.343426 GGTAGGGCTTGCTTGCACC 61.343 63.158 0.00 0.00 36.97 5.01
2733 8419 3.278157 GGTAGGGCTTGCTTGCAC 58.722 61.111 0.00 0.03 36.44 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.