Multiple sequence alignment - TraesCS7A01G033200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G033200 chr7A 100.000 4637 0 0 1 4637 14448058 14443422 0.000000e+00 8564.0
1 TraesCS7A01G033200 chr7A 89.172 471 49 2 4030 4498 735179294 735179764 1.860000e-163 586.0
2 TraesCS7A01G033200 chr7A 81.239 549 95 7 1421 1965 687953361 687953905 1.980000e-118 436.0
3 TraesCS7A01G033200 chr7A 80.874 549 95 9 1422 1965 682892046 682891503 1.540000e-114 424.0
4 TraesCS7A01G033200 chr7A 100.000 85 0 0 2401 2485 30061342 30061258 1.730000e-34 158.0
5 TraesCS7A01G033200 chr7A 95.745 94 4 0 2400 2493 705090240 705090333 8.040000e-33 152.0
6 TraesCS7A01G033200 chr7A 82.716 162 28 0 1140 1301 200634361 200634200 1.340000e-30 145.0
7 TraesCS7A01G033200 chr7D 93.186 2436 82 36 1 2403 15001499 14999115 0.000000e+00 3502.0
8 TraesCS7A01G033200 chr7D 94.919 866 24 8 2484 3334 14999117 14998257 0.000000e+00 1338.0
9 TraesCS7A01G033200 chr7D 88.442 597 42 7 4029 4598 79321590 79322186 0.000000e+00 695.0
10 TraesCS7A01G033200 chr7D 88.087 596 45 8 4029 4598 79257353 79257948 0.000000e+00 684.0
11 TraesCS7A01G033200 chr7D 87.603 605 42 18 4025 4598 185380999 185381601 0.000000e+00 671.0
12 TraesCS7A01G033200 chr7D 79.954 878 151 22 1100 1965 576894556 576895420 1.420000e-174 623.0
13 TraesCS7A01G033200 chr7D 92.284 324 23 1 3275 3598 14998204 14997883 4.230000e-125 459.0
14 TraesCS7A01G033200 chr7D 81.387 548 94 8 1422 1965 591805831 591805288 1.530000e-119 440.0
15 TraesCS7A01G033200 chr7D 94.118 289 15 2 474 762 571322712 571322426 5.510000e-119 438.0
16 TraesCS7A01G033200 chr7D 81.338 568 76 21 276 825 378649865 378650420 7.130000e-118 435.0
17 TraesCS7A01G033200 chr7D 93.878 196 10 2 272 465 78179471 78179276 1.260000e-75 294.0
18 TraesCS7A01G033200 chr7D 77.439 492 97 13 1425 1909 192022477 192021993 9.820000e-72 281.0
19 TraesCS7A01G033200 chr7D 94.086 186 6 2 3841 4025 14997889 14997708 1.270000e-70 278.0
20 TraesCS7A01G033200 chr7D 76.687 489 104 8 1422 1905 191829075 191828592 3.560000e-66 263.0
21 TraesCS7A01G033200 chr7D 79.643 280 40 13 1422 1691 598257863 598257591 7.920000e-43 185.0
22 TraesCS7A01G033200 chr7D 93.878 98 6 0 2389 2486 104025064 104025161 1.040000e-31 148.0
23 TraesCS7A01G033200 chr7D 93.846 65 4 0 757 821 601122097 601122033 1.060000e-16 99.0
24 TraesCS7A01G033200 chr7D 94.737 38 2 0 3404 3441 14998119 14998082 5.010000e-05 60.2
25 TraesCS7A01G033200 chr4A 94.256 853 33 5 2484 3334 720784871 720785709 0.000000e+00 1290.0
26 TraesCS7A01G033200 chr4A 94.021 853 34 6 2484 3334 720678277 720679114 0.000000e+00 1277.0
27 TraesCS7A01G033200 chr4A 89.588 413 35 5 3275 3686 720785835 720786240 6.880000e-143 518.0
28 TraesCS7A01G033200 chr4A 89.346 413 36 5 3275 3686 720679240 720679645 3.200000e-141 512.0
29 TraesCS7A01G033200 chr4A 89.346 413 36 5 3275 3686 720734925 720735330 3.200000e-141 512.0
30 TraesCS7A01G033200 chr4A 90.331 362 13 5 2051 2398 720784459 720784812 5.470000e-124 455.0
31 TraesCS7A01G033200 chr4A 90.558 233 8 3 2051 2269 720677478 720677710 3.510000e-76 296.0
32 TraesCS7A01G033200 chr4A 93.407 182 7 2 3154 3334 720734622 720734799 9.890000e-67 265.0
33 TraesCS7A01G033200 chr4A 87.179 156 16 4 4433 4585 714850825 714850979 1.720000e-39 174.0
34 TraesCS7A01G033200 chr4A 96.000 100 4 0 986 1085 720784363 720784462 3.710000e-36 163.0
35 TraesCS7A01G033200 chr4A 90.909 121 9 1 819 939 720677257 720677375 1.340000e-35 161.0
36 TraesCS7A01G033200 chr4A 90.909 121 9 1 819 939 720784238 720784356 1.340000e-35 161.0
37 TraesCS7A01G033200 chr4A 96.703 91 3 0 2308 2398 720678128 720678218 8.040000e-33 152.0
38 TraesCS7A01G033200 chr4A 96.875 64 1 1 3275 3337 720734850 720734913 6.350000e-19 106.0
39 TraesCS7A01G033200 chr4A 92.754 69 5 0 753 821 733885642 733885574 2.950000e-17 100.0
40 TraesCS7A01G033200 chr4A 90.667 75 6 1 753 827 348807170 348807243 1.060000e-16 99.0
41 TraesCS7A01G033200 chr6A 88.945 597 39 6 4028 4598 470900785 470901380 0.000000e+00 712.0
42 TraesCS7A01G033200 chr6A 91.549 71 6 0 753 823 583442998 583443068 1.060000e-16 99.0
43 TraesCS7A01G033200 chr5D 88.403 595 43 5 4030 4598 385874467 385873873 0.000000e+00 693.0
44 TraesCS7A01G033200 chr5D 86.935 597 50 7 4029 4598 301438665 301438070 0.000000e+00 645.0
45 TraesCS7A01G033200 chr5D 80.399 551 96 11 1421 1965 476673808 476673264 4.320000e-110 409.0
46 TraesCS7A01G033200 chr5D 94.301 193 9 2 273 463 407995230 407995422 1.260000e-75 294.0
47 TraesCS7A01G033200 chr7B 81.066 882 143 21 1100 1965 639850556 639849683 0.000000e+00 682.0
48 TraesCS7A01G033200 chr7B 88.960 471 50 2 4030 4498 744555174 744554704 8.650000e-162 580.0
49 TraesCS7A01G033200 chr7B 81.273 550 97 6 1420 1966 666685161 666684615 1.530000e-119 440.0
50 TraesCS7A01G033200 chr7B 82.099 162 29 0 1140 1301 337158796 337158635 6.260000e-29 139.0
51 TraesCS7A01G033200 chr7B 90.000 80 8 0 1222 1301 677115449 677115370 2.280000e-18 104.0
52 TraesCS7A01G033200 chr3B 87.326 576 63 8 4030 4598 62981606 62981034 0.000000e+00 651.0
53 TraesCS7A01G033200 chr2B 86.935 597 49 12 4030 4598 26941046 26940451 1.090000e-180 643.0
54 TraesCS7A01G033200 chr2B 84.302 172 18 6 4433 4598 711254230 711254062 4.800000e-35 159.0
55 TraesCS7A01G033200 chr1D 86.667 600 48 18 4025 4598 13191856 13192449 1.820000e-178 636.0
56 TraesCS7A01G033200 chr1D 95.156 289 13 1 474 761 104869901 104869613 5.470000e-124 455.0
57 TraesCS7A01G033200 chr1D 95.668 277 12 0 474 750 139397701 139397977 3.290000e-121 446.0
58 TraesCS7A01G033200 chr1D 78.657 417 67 18 1414 1819 441308942 441308537 1.660000e-64 257.0
59 TraesCS7A01G033200 chr1D 90.625 64 4 1 762 825 161817307 161817246 2.970000e-12 84.2
60 TraesCS7A01G033200 chr5B 85.395 582 56 18 4044 4598 18404202 18403623 1.120000e-160 577.0
61 TraesCS7A01G033200 chr5B 80.036 551 98 11 1421 1965 584096281 584095737 9.350000e-107 398.0
62 TraesCS7A01G033200 chr5B 87.449 247 23 8 274 514 320094183 320094427 1.270000e-70 278.0
63 TraesCS7A01G033200 chr5B 100.000 89 0 0 2398 2486 705462716 705462628 1.030000e-36 165.0
64 TraesCS7A01G033200 chr5B 92.857 70 5 0 754 823 48636322 48636391 8.210000e-18 102.0
65 TraesCS7A01G033200 chr5B 92.857 70 5 0 754 823 499229425 499229356 8.210000e-18 102.0
66 TraesCS7A01G033200 chr5B 92.857 70 5 0 754 823 520633647 520633716 8.210000e-18 102.0
67 TraesCS7A01G033200 chr5B 92.857 70 5 0 754 823 585313243 585313312 8.210000e-18 102.0
68 TraesCS7A01G033200 chr4D 95.406 283 13 0 471 753 318830809 318831091 7.080000e-123 451.0
69 TraesCS7A01G033200 chr4D 91.667 72 6 0 753 824 508590510 508590439 2.950000e-17 100.0
70 TraesCS7A01G033200 chr3D 95.053 283 14 0 471 753 163316431 163316713 3.290000e-121 446.0
71 TraesCS7A01G033200 chr3D 95.357 280 13 0 474 753 309507416 309507137 3.290000e-121 446.0
72 TraesCS7A01G033200 chr3D 92.308 104 5 3 2384 2486 560920334 560920435 1.340000e-30 145.0
73 TraesCS7A01G033200 chr3D 72.771 415 101 11 1415 1823 5760763 5760355 3.770000e-26 130.0
74 TraesCS7A01G033200 chr1A 92.715 302 18 3 471 768 136795529 136795830 2.560000e-117 433.0
75 TraesCS7A01G033200 chr1A 77.941 408 72 15 1421 1819 536652744 536653142 6.000000e-59 239.0
76 TraesCS7A01G033200 chr1A 95.745 94 4 0 2393 2486 584966833 584966926 8.040000e-33 152.0
77 TraesCS7A01G033200 chr1A 82.203 118 21 0 1184 1301 536652617 536652734 8.210000e-18 102.0
78 TraesCS7A01G033200 chr1A 90.625 64 4 1 762 825 421373487 421373426 2.970000e-12 84.2
79 TraesCS7A01G033200 chr3A 86.347 271 31 6 273 539 121649194 121649462 1.630000e-74 291.0
80 TraesCS7A01G033200 chr3A 92.105 76 5 1 751 826 530480928 530481002 6.350000e-19 106.0
81 TraesCS7A01G033200 chr5A 90.741 216 12 8 274 482 332920411 332920197 9.820000e-72 281.0
82 TraesCS7A01G033200 chr5A 92.105 114 5 4 2390 2500 566991394 566991506 1.730000e-34 158.0
83 TraesCS7A01G033200 chr2D 87.705 244 23 4 273 510 25753320 25753078 1.270000e-70 278.0
84 TraesCS7A01G033200 chr2D 88.034 117 11 3 2371 2486 412382632 412382518 8.090000e-28 135.0
85 TraesCS7A01G033200 chr2A 84.783 276 34 7 273 542 28152017 28151744 2.130000e-68 270.0
86 TraesCS7A01G033200 chr2A 93.056 72 5 0 753 824 706288819 706288748 6.350000e-19 106.0
87 TraesCS7A01G033200 chr2A 91.892 74 6 0 753 826 99129765 99129692 2.280000e-18 104.0
88 TraesCS7A01G033200 chr1B 77.941 408 72 15 1421 1819 599514409 599514011 6.000000e-59 239.0
89 TraesCS7A01G033200 chr1B 97.778 90 2 0 2397 2486 344374434 344374345 6.210000e-34 156.0
90 TraesCS7A01G033200 chrUn 82.988 241 14 14 4384 4598 479583393 479583632 4.730000e-45 193.0
91 TraesCS7A01G033200 chrUn 86.184 152 18 3 4433 4582 288727457 288727607 1.340000e-35 161.0
92 TraesCS7A01G033200 chr6B 94.286 70 4 0 754 823 565314477 565314408 1.760000e-19 108.0
93 TraesCS7A01G033200 chr6B 88.095 84 8 1 751 834 38219275 38219194 1.060000e-16 99.0
94 TraesCS7A01G033200 chr4B 92.857 70 5 0 754 823 562313554 562313623 8.210000e-18 102.0
95 TraesCS7A01G033200 chr4B 91.429 70 6 0 754 823 98391850 98391919 3.820000e-16 97.1
96 TraesCS7A01G033200 chr4B 86.842 76 9 1 753 827 80549922 80549847 2.970000e-12 84.2
97 TraesCS7A01G033200 chr4B 86.842 76 9 1 753 827 80579247 80579172 2.970000e-12 84.2
98 TraesCS7A01G033200 chr4B 92.308 52 4 0 753 804 583979216 583979165 1.790000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G033200 chr7A 14443422 14448058 4636 True 8564.000000 8564 100.000000 1 4637 1 chr7A.!!$R1 4636
1 TraesCS7A01G033200 chr7A 687953361 687953905 544 False 436.000000 436 81.239000 1421 1965 1 chr7A.!!$F1 544
2 TraesCS7A01G033200 chr7A 682891503 682892046 543 True 424.000000 424 80.874000 1422 1965 1 chr7A.!!$R4 543
3 TraesCS7A01G033200 chr7D 14997708 15001499 3791 True 1127.440000 3502 93.842400 1 4025 5 chr7D.!!$R8 4024
4 TraesCS7A01G033200 chr7D 79321590 79322186 596 False 695.000000 695 88.442000 4029 4598 1 chr7D.!!$F2 569
5 TraesCS7A01G033200 chr7D 79257353 79257948 595 False 684.000000 684 88.087000 4029 4598 1 chr7D.!!$F1 569
6 TraesCS7A01G033200 chr7D 185380999 185381601 602 False 671.000000 671 87.603000 4025 4598 1 chr7D.!!$F4 573
7 TraesCS7A01G033200 chr7D 576894556 576895420 864 False 623.000000 623 79.954000 1100 1965 1 chr7D.!!$F6 865
8 TraesCS7A01G033200 chr7D 591805288 591805831 543 True 440.000000 440 81.387000 1422 1965 1 chr7D.!!$R5 543
9 TraesCS7A01G033200 chr7D 378649865 378650420 555 False 435.000000 435 81.338000 276 825 1 chr7D.!!$F5 549
10 TraesCS7A01G033200 chr4A 720784238 720786240 2002 False 517.400000 1290 92.216800 819 3686 5 chr4A.!!$F5 2867
11 TraesCS7A01G033200 chr4A 720677257 720679645 2388 False 479.600000 1277 92.307400 819 3686 5 chr4A.!!$F3 2867
12 TraesCS7A01G033200 chr4A 720734622 720735330 708 False 294.333333 512 93.209333 3154 3686 3 chr4A.!!$F4 532
13 TraesCS7A01G033200 chr6A 470900785 470901380 595 False 712.000000 712 88.945000 4028 4598 1 chr6A.!!$F1 570
14 TraesCS7A01G033200 chr5D 385873873 385874467 594 True 693.000000 693 88.403000 4030 4598 1 chr5D.!!$R2 568
15 TraesCS7A01G033200 chr5D 301438070 301438665 595 True 645.000000 645 86.935000 4029 4598 1 chr5D.!!$R1 569
16 TraesCS7A01G033200 chr5D 476673264 476673808 544 True 409.000000 409 80.399000 1421 1965 1 chr5D.!!$R3 544
17 TraesCS7A01G033200 chr7B 639849683 639850556 873 True 682.000000 682 81.066000 1100 1965 1 chr7B.!!$R2 865
18 TraesCS7A01G033200 chr7B 666684615 666685161 546 True 440.000000 440 81.273000 1420 1966 1 chr7B.!!$R3 546
19 TraesCS7A01G033200 chr3B 62981034 62981606 572 True 651.000000 651 87.326000 4030 4598 1 chr3B.!!$R1 568
20 TraesCS7A01G033200 chr2B 26940451 26941046 595 True 643.000000 643 86.935000 4030 4598 1 chr2B.!!$R1 568
21 TraesCS7A01G033200 chr1D 13191856 13192449 593 False 636.000000 636 86.667000 4025 4598 1 chr1D.!!$F1 573
22 TraesCS7A01G033200 chr5B 18403623 18404202 579 True 577.000000 577 85.395000 4044 4598 1 chr5B.!!$R1 554
23 TraesCS7A01G033200 chr5B 584095737 584096281 544 True 398.000000 398 80.036000 1421 1965 1 chr5B.!!$R3 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
297 300 0.460311 CTAGCCACGGTGGGAGTAAG 59.540 60.0 27.41 1.67 38.19 2.34 F
944 957 0.546507 TGGCCCGCCCATATATCTCA 60.547 55.0 0.00 0.00 39.18 3.27 F
945 958 0.618458 GGCCCGCCCATATATCTCAA 59.382 55.0 0.00 0.00 0.00 3.02 F
1909 1934 0.704664 GGTTCTCCATGGAGGGGTTT 59.295 55.0 35.95 0.00 42.20 3.27 F
3165 3611 0.613260 AATTCTACCAGGACGCTGCA 59.387 50.0 0.00 0.00 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1212 1228 0.175760 CCGACGAACATGAGGGACAT 59.824 55.00 0.00 0.00 40.17 3.06 R
2712 3152 0.179084 AATGTATGCCACGACCTCCG 60.179 55.00 0.00 0.00 45.44 4.63 R
2937 3379 7.601886 TCAAAGTTTTTCTTTTGCAGATGACAA 59.398 29.63 0.00 0.00 42.95 3.18 R
3217 3663 0.174162 GCCTTGGTAGCCTGCAATTG 59.826 55.00 0.00 0.00 0.00 2.32 R
4611 5281 0.109226 GTAGGAGGCTGACACGTGTC 60.109 60.00 36.01 36.01 44.97 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
175 176 6.019075 GCCTTTTAGTTCACAAAATTCACCAC 60.019 38.462 0.00 0.00 0.00 4.16
184 185 3.634910 ACAAAATTCACCACTGTACACCC 59.365 43.478 0.00 0.00 0.00 4.61
185 186 3.876309 AAATTCACCACTGTACACCCT 57.124 42.857 0.00 0.00 0.00 4.34
211 212 3.981071 TCCGGTCACATTTTCTCTCAT 57.019 42.857 0.00 0.00 0.00 2.90
229 230 3.326521 TCATAGGCACACTCCCCAATAT 58.673 45.455 0.00 0.00 0.00 1.28
246 247 7.792736 TCCCCAATATACTATTCCAACACTACT 59.207 37.037 0.00 0.00 0.00 2.57
269 270 4.517453 TCCCAATTTCACGAACTAAACAGG 59.483 41.667 0.00 0.00 0.00 4.00
297 300 0.460311 CTAGCCACGGTGGGAGTAAG 59.540 60.000 27.41 1.67 38.19 2.34
502 511 4.770795 AGCCACAATGGAGAGTAACATAC 58.229 43.478 0.00 0.00 40.96 2.39
541 550 9.742144 CACATATCCCTAGACTATGTTACTACT 57.258 37.037 8.30 0.00 34.66 2.57
593 602 5.979517 GGTAACATGCAAAGCCTCATTTATC 59.020 40.000 0.00 0.00 0.00 1.75
602 611 7.725397 TGCAAAGCCTCATTTATCAGGTTATAT 59.275 33.333 0.00 0.00 31.65 0.86
626 635 8.922931 ATACTCATATTGCATTTGGACATGTA 57.077 30.769 0.00 0.00 0.00 2.29
707 716 7.331440 TGCCACATAAGCAAATTTATTGAGTTG 59.669 33.333 0.00 0.00 37.28 3.16
728 737 3.006430 TGGACTCGATGTTACTGCTGAAA 59.994 43.478 0.00 0.00 0.00 2.69
734 743 6.874134 ACTCGATGTTACTGCTGAAATTACTT 59.126 34.615 0.00 0.00 0.00 2.24
848 861 2.418746 GCAAGTGACGGTACCATGAGAT 60.419 50.000 13.54 0.00 0.00 2.75
858 871 7.081526 ACGGTACCATGAGATTATATACGTC 57.918 40.000 13.54 0.00 0.00 4.34
886 899 2.639065 TGACACAAGTTCAACCAGTCC 58.361 47.619 0.00 0.00 0.00 3.85
907 920 3.315191 CCTGAAACTTGAAAGCTCCGAAA 59.685 43.478 0.00 0.00 0.00 3.46
908 921 4.202010 CCTGAAACTTGAAAGCTCCGAAAA 60.202 41.667 0.00 0.00 0.00 2.29
939 952 1.382240 CCATTGGCCCGCCCATATA 59.618 57.895 0.00 0.00 44.89 0.86
941 954 1.392589 CATTGGCCCGCCCATATATC 58.607 55.000 0.00 0.00 44.89 1.63
942 955 1.064463 CATTGGCCCGCCCATATATCT 60.064 52.381 0.00 0.00 44.89 1.98
943 956 0.618458 TTGGCCCGCCCATATATCTC 59.382 55.000 0.00 0.00 44.89 2.75
944 957 0.546507 TGGCCCGCCCATATATCTCA 60.547 55.000 0.00 0.00 39.18 3.27
945 958 0.618458 GGCCCGCCCATATATCTCAA 59.382 55.000 0.00 0.00 0.00 3.02
946 959 1.407437 GGCCCGCCCATATATCTCAAG 60.407 57.143 0.00 0.00 0.00 3.02
947 960 1.279271 GCCCGCCCATATATCTCAAGT 59.721 52.381 0.00 0.00 0.00 3.16
948 961 2.678190 GCCCGCCCATATATCTCAAGTC 60.678 54.545 0.00 0.00 0.00 3.01
949 962 2.567169 CCCGCCCATATATCTCAAGTCA 59.433 50.000 0.00 0.00 0.00 3.41
979 992 1.158944 TACCACACCCTGCCCTACA 59.841 57.895 0.00 0.00 0.00 2.74
1085 1098 0.813610 TGGACCACAAGCAAGACACG 60.814 55.000 0.00 0.00 0.00 4.49
1212 1228 4.701171 TGCTGCAGAACATCATCAACATAA 59.299 37.500 20.43 0.00 0.00 1.90
1301 1317 3.616721 AGCGTCACCGGCTTCAGT 61.617 61.111 0.00 0.00 37.50 3.41
1311 1327 2.293677 ACCGGCTTCAGTATCATCGTAG 59.706 50.000 0.00 0.00 0.00 3.51
1330 1346 1.010170 AGGCCCATTTCCCTACTCTCT 59.990 52.381 0.00 0.00 0.00 3.10
1342 1358 5.626142 TCCCTACTCTCTCTCATCATACAC 58.374 45.833 0.00 0.00 0.00 2.90
1356 1381 6.393171 TCATCATACACACACTCTCTTCAAG 58.607 40.000 0.00 0.00 0.00 3.02
1357 1382 6.209391 TCATCATACACACACTCTCTTCAAGA 59.791 38.462 0.00 0.00 0.00 3.02
1359 1384 6.997655 TCATACACACACTCTCTTCAAGAAT 58.002 36.000 0.00 0.00 32.23 2.40
1362 1387 5.674525 ACACACACTCTCTTCAAGAATGAA 58.325 37.500 0.00 0.00 43.18 2.57
1645 1670 3.390521 TGGCTCATCCCGTCGCTT 61.391 61.111 0.00 0.00 0.00 4.68
1909 1934 0.704664 GGTTCTCCATGGAGGGGTTT 59.295 55.000 35.95 0.00 42.20 3.27
1938 1963 1.752501 CGCAAATTCGCCGATCTCGT 61.753 55.000 0.00 0.00 37.74 4.18
1970 1995 5.243730 TCTGCGATGATGATCTGGTATGTAA 59.756 40.000 0.00 0.00 0.00 2.41
1971 1996 5.473039 TGCGATGATGATCTGGTATGTAAG 58.527 41.667 0.00 0.00 0.00 2.34
2041 2066 0.741326 TAGGCTGTTTTGTTGCGCAA 59.259 45.000 21.02 21.02 34.87 4.85
2052 2077 2.979240 TGTTGCGCAATAGACCATACA 58.021 42.857 27.79 14.03 0.00 2.29
2071 2101 4.981806 ACACCCGGATTTCATTTACATG 57.018 40.909 0.73 0.00 0.00 3.21
2134 2178 6.514870 GCACCACTTGATAGAAACAATGTCAA 60.515 38.462 0.00 0.00 0.00 3.18
2269 2313 7.249147 CACATCAAGCTTCAGAAATTAAGGAG 58.751 38.462 0.00 0.00 0.00 3.69
2270 2314 6.944862 ACATCAAGCTTCAGAAATTAAGGAGT 59.055 34.615 0.00 0.00 0.00 3.85
2271 2315 8.103305 ACATCAAGCTTCAGAAATTAAGGAGTA 58.897 33.333 0.00 0.00 0.00 2.59
2272 2316 8.950210 CATCAAGCTTCAGAAATTAAGGAGTAA 58.050 33.333 0.00 0.00 0.00 2.24
2273 2317 8.553459 TCAAGCTTCAGAAATTAAGGAGTAAG 57.447 34.615 0.00 0.00 0.00 2.34
2274 2318 7.607991 TCAAGCTTCAGAAATTAAGGAGTAAGG 59.392 37.037 0.00 0.00 0.00 2.69
2275 2319 7.259088 AGCTTCAGAAATTAAGGAGTAAGGA 57.741 36.000 0.00 0.00 0.00 3.36
2284 2328 8.794335 AAATTAAGGAGTAAGGACACATCTTC 57.206 34.615 0.00 0.00 0.00 2.87
2405 2835 8.098220 GGTAACTTACTACTATCTGCTACTCC 57.902 42.308 0.00 0.00 0.00 3.85
2407 2837 6.518516 ACTTACTACTATCTGCTACTCCCT 57.481 41.667 0.00 0.00 0.00 4.20
2408 2838 6.913545 ACTTACTACTATCTGCTACTCCCTT 58.086 40.000 0.00 0.00 0.00 3.95
2409 2839 6.999871 ACTTACTACTATCTGCTACTCCCTTC 59.000 42.308 0.00 0.00 0.00 3.46
2411 2841 3.300239 ACTATCTGCTACTCCCTTCGT 57.700 47.619 0.00 0.00 0.00 3.85
2412 2842 4.434545 ACTATCTGCTACTCCCTTCGTA 57.565 45.455 0.00 0.00 0.00 3.43
2413 2843 4.789807 ACTATCTGCTACTCCCTTCGTAA 58.210 43.478 0.00 0.00 0.00 3.18
2414 2844 5.198965 ACTATCTGCTACTCCCTTCGTAAA 58.801 41.667 0.00 0.00 0.00 2.01
2415 2845 3.863142 TCTGCTACTCCCTTCGTAAAC 57.137 47.619 0.00 0.00 0.00 2.01
2416 2846 3.428532 TCTGCTACTCCCTTCGTAAACT 58.571 45.455 0.00 0.00 0.00 2.66
2417 2847 4.592942 TCTGCTACTCCCTTCGTAAACTA 58.407 43.478 0.00 0.00 0.00 2.24
2418 2848 5.012239 TCTGCTACTCCCTTCGTAAACTAA 58.988 41.667 0.00 0.00 0.00 2.24
2419 2849 5.655532 TCTGCTACTCCCTTCGTAAACTAAT 59.344 40.000 0.00 0.00 0.00 1.73
2421 2851 7.504911 TCTGCTACTCCCTTCGTAAACTAATAT 59.495 37.037 0.00 0.00 0.00 1.28
2422 2852 8.696043 TGCTACTCCCTTCGTAAACTAATATA 57.304 34.615 0.00 0.00 0.00 0.86
2423 2853 9.135189 TGCTACTCCCTTCGTAAACTAATATAA 57.865 33.333 0.00 0.00 0.00 0.98
2424 2854 9.623350 GCTACTCCCTTCGTAAACTAATATAAG 57.377 37.037 0.00 0.00 0.00 1.73
2428 2858 7.365741 TCCCTTCGTAAACTAATATAAGAGCG 58.634 38.462 0.00 0.00 0.00 5.03
2431 2861 9.028185 CCTTCGTAAACTAATATAAGAGCGTTT 57.972 33.333 0.00 0.00 0.00 3.60
2446 2876 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
2447 2877 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
2448 2878 8.503458 AGAGCGTTTAGATCACTAAAGTAGTA 57.497 34.615 0.00 0.00 45.42 1.82
2449 2879 8.954350 AGAGCGTTTAGATCACTAAAGTAGTAA 58.046 33.333 0.00 0.00 45.42 2.24
2450 2880 9.733219 GAGCGTTTAGATCACTAAAGTAGTAAT 57.267 33.333 0.00 0.00 45.42 1.89
2451 2881 9.733219 AGCGTTTAGATCACTAAAGTAGTAATC 57.267 33.333 0.00 0.00 45.42 1.75
2452 2882 9.733219 GCGTTTAGATCACTAAAGTAGTAATCT 57.267 33.333 6.37 6.37 44.17 2.40
2458 2888 9.733219 AGATCACTAAAGTAGTAATCTAAACGC 57.267 33.333 0.03 0.00 41.03 4.84
2459 2889 9.733219 GATCACTAAAGTAGTAATCTAAACGCT 57.267 33.333 0.00 0.00 37.23 5.07
2460 2890 9.733219 ATCACTAAAGTAGTAATCTAAACGCTC 57.267 33.333 0.00 0.00 37.23 5.03
2461 2891 8.954350 TCACTAAAGTAGTAATCTAAACGCTCT 58.046 33.333 0.00 0.00 37.23 4.09
2462 2892 9.570488 CACTAAAGTAGTAATCTAAACGCTCTT 57.430 33.333 0.00 0.00 37.23 2.85
2479 2909 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
2480 2910 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
2481 2911 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
2482 2912 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
2503 2933 5.655532 GGAGTACCACTCAATACCTACAAGA 59.344 44.000 8.47 0.00 46.79 3.02
2642 3082 1.210155 GTGTGCATCGCCTTGTTCC 59.790 57.895 0.00 0.00 0.00 3.62
2712 3152 3.559774 GGTACATGTACAGCAACGAGCC 61.560 54.545 31.52 11.35 37.01 4.70
2937 3379 5.163343 TGGTAAACTCTACAAGCTCAACACT 60.163 40.000 0.00 0.00 0.00 3.55
2970 3412 7.683746 TGCAAAAGAAAAACTTTGAATGTAGC 58.316 30.769 0.00 0.00 46.55 3.58
2980 3422 9.683069 AAAACTTTGAATGTAGCATAGTGAAAG 57.317 29.630 0.00 0.00 29.90 2.62
3001 3443 5.954153 AGGACATGATCATCTCTCAACTT 57.046 39.130 4.86 0.00 0.00 2.66
3129 3571 5.211973 TGGAGCATGGAAGTAAGTAGAGAT 58.788 41.667 0.00 0.00 0.00 2.75
3130 3572 5.663106 TGGAGCATGGAAGTAAGTAGAGATT 59.337 40.000 0.00 0.00 0.00 2.40
3165 3611 0.613260 AATTCTACCAGGACGCTGCA 59.387 50.000 0.00 0.00 0.00 4.41
3166 3612 0.613260 ATTCTACCAGGACGCTGCAA 59.387 50.000 0.00 0.00 0.00 4.08
3167 3613 0.613260 TTCTACCAGGACGCTGCAAT 59.387 50.000 0.00 0.00 0.00 3.56
3168 3614 1.480789 TCTACCAGGACGCTGCAATA 58.519 50.000 0.00 0.00 0.00 1.90
3205 3651 1.280421 GCCAGGGTGACATCTCTTTCT 59.720 52.381 0.00 0.00 0.00 2.52
3217 3663 6.708054 TGACATCTCTTTCTCTTCCTGTTTTC 59.292 38.462 0.00 0.00 0.00 2.29
3381 4015 4.257731 TGCTGATTTGTACGGCAGATTTA 58.742 39.130 0.00 0.00 43.38 1.40
3401 4035 7.758528 AGATTTATTGTGAGAGAAAAATGCTGC 59.241 33.333 0.00 0.00 0.00 5.25
3464 4098 4.219288 ACTGCAGAAGAAGCCAAAATAAGG 59.781 41.667 23.35 0.00 0.00 2.69
3472 4106 3.739077 CCAAAATAAGGCAAGCCGG 57.261 52.632 5.28 0.00 41.95 6.13
3478 4112 1.696097 ATAAGGCAAGCCGGACGGAT 61.696 55.000 15.99 4.99 41.95 4.18
3539 4173 4.510340 CGACCAAGCTAACAGTAAGTTGTT 59.490 41.667 0.00 0.00 41.50 2.83
3560 4194 6.884832 TGTTCTCCGTAGATGTTATTGGATT 58.115 36.000 0.00 0.00 0.00 3.01
3611 4245 8.742554 AATATTTAAGAAACCAAAGAACGCAG 57.257 30.769 0.00 0.00 0.00 5.18
3613 4247 3.692791 AAGAAACCAAAGAACGCAGAC 57.307 42.857 0.00 0.00 0.00 3.51
3621 4255 4.280174 ACCAAAGAACGCAGACTAGAGTAA 59.720 41.667 0.00 0.00 0.00 2.24
3623 4257 5.869888 CCAAAGAACGCAGACTAGAGTAAAT 59.130 40.000 0.00 0.00 0.00 1.40
3624 4258 6.369065 CCAAAGAACGCAGACTAGAGTAAATT 59.631 38.462 0.00 0.00 0.00 1.82
3658 4292 1.071385 AGAGTCTGGTCCAGCACTTTG 59.929 52.381 14.64 0.00 0.00 2.77
3668 4302 0.109342 CAGCACTTTGGGACTCTGGT 59.891 55.000 0.00 0.00 0.00 4.00
3669 4303 0.398318 AGCACTTTGGGACTCTGGTC 59.602 55.000 0.00 0.00 41.43 4.02
3670 4304 0.398318 GCACTTTGGGACTCTGGTCT 59.602 55.000 0.00 0.00 41.82 3.85
3674 4308 2.104963 ACTTTGGGACTCTGGTCTGTTC 59.895 50.000 0.00 0.00 41.82 3.18
3686 4320 9.220767 GACTCTGGTCTGTTCTGTATTTAAAAT 57.779 33.333 0.00 0.00 39.24 1.82
3687 4321 9.574516 ACTCTGGTCTGTTCTGTATTTAAAATT 57.425 29.630 0.00 0.00 0.00 1.82
3709 4343 7.656707 ATTTTCTTGTAACAAACATGATGGC 57.343 32.000 0.00 0.00 40.72 4.40
3710 4344 5.781210 TTCTTGTAACAAACATGATGGCA 57.219 34.783 0.00 0.00 40.72 4.92
3711 4345 5.119931 TCTTGTAACAAACATGATGGCAC 57.880 39.130 0.00 1.69 37.35 5.01
3712 4346 4.582240 TCTTGTAACAAACATGATGGCACA 59.418 37.500 0.00 4.20 40.12 4.57
3713 4347 5.243507 TCTTGTAACAAACATGATGGCACAT 59.756 36.000 0.00 0.00 40.24 3.21
3714 4348 6.432472 TCTTGTAACAAACATGATGGCACATA 59.568 34.615 0.00 0.00 40.24 2.29
3715 4349 6.193514 TGTAACAAACATGATGGCACATAG 57.806 37.500 0.00 0.00 36.55 2.23
3716 4350 5.125257 TGTAACAAACATGATGGCACATAGG 59.875 40.000 0.00 0.00 36.55 2.57
3717 4351 7.026389 TGTAACAAACATGATGGCACATAGGA 61.026 38.462 0.00 0.00 36.55 2.94
3718 4352 8.446602 TGTAACAAACATGATGGCACATAGGAA 61.447 37.037 0.00 0.00 36.55 3.36
3726 4360 2.991250 TGGCACATAGGAAGAGCTTTC 58.009 47.619 0.00 0.00 0.00 2.62
3727 4361 2.293170 GGCACATAGGAAGAGCTTTCC 58.707 52.381 15.76 15.76 38.86 3.13
3735 4369 3.699413 AGGAAGAGCTTTCCTACGTAGT 58.301 45.455 21.50 1.17 46.48 2.73
3736 4370 3.444388 AGGAAGAGCTTTCCTACGTAGTG 59.556 47.826 21.50 12.38 46.48 2.74
3737 4371 3.442977 GGAAGAGCTTTCCTACGTAGTGA 59.557 47.826 20.73 14.37 45.73 3.41
3738 4372 4.098196 GGAAGAGCTTTCCTACGTAGTGAT 59.902 45.833 20.73 7.15 45.73 3.06
3739 4373 4.904253 AGAGCTTTCCTACGTAGTGATC 57.096 45.455 20.73 14.65 45.73 2.92
3740 4374 4.528920 AGAGCTTTCCTACGTAGTGATCT 58.471 43.478 20.73 16.35 45.73 2.75
3741 4375 4.336993 AGAGCTTTCCTACGTAGTGATCTG 59.663 45.833 20.73 4.99 45.73 2.90
3742 4376 4.270834 AGCTTTCCTACGTAGTGATCTGA 58.729 43.478 20.73 7.30 45.73 3.27
3743 4377 4.336993 AGCTTTCCTACGTAGTGATCTGAG 59.663 45.833 20.73 12.79 45.73 3.35
3744 4378 4.335874 GCTTTCCTACGTAGTGATCTGAGA 59.664 45.833 20.73 5.89 45.73 3.27
3745 4379 5.009210 GCTTTCCTACGTAGTGATCTGAGAT 59.991 44.000 20.73 0.00 45.73 2.75
3746 4380 6.378710 TTTCCTACGTAGTGATCTGAGATG 57.621 41.667 20.73 1.68 45.73 2.90
3747 4381 5.037383 TCCTACGTAGTGATCTGAGATGT 57.963 43.478 20.73 0.00 45.73 3.06
3748 4382 4.816925 TCCTACGTAGTGATCTGAGATGTG 59.183 45.833 20.73 1.06 45.73 3.21
3749 4383 3.428746 ACGTAGTGATCTGAGATGTGC 57.571 47.619 0.00 0.00 42.51 4.57
3750 4384 3.020274 ACGTAGTGATCTGAGATGTGCT 58.980 45.455 0.00 0.00 42.51 4.40
3751 4385 3.066064 ACGTAGTGATCTGAGATGTGCTC 59.934 47.826 0.00 0.00 42.51 4.26
3752 4386 5.403221 ACGTAGTGATCTGAGATGTGCTCA 61.403 45.833 0.00 0.00 46.76 4.26
3753 4387 7.385886 ACGTAGTGATCTGAGATGTGCTCAC 62.386 48.000 0.00 2.06 44.90 3.51
3761 4395 2.891112 GAGATGTGCTCACAAGAGAGG 58.109 52.381 6.81 0.00 45.41 3.69
3762 4396 2.495270 GAGATGTGCTCACAAGAGAGGA 59.505 50.000 6.81 0.00 45.41 3.71
3763 4397 2.496871 AGATGTGCTCACAAGAGAGGAG 59.503 50.000 6.81 0.00 45.41 3.69
3764 4398 2.001076 TGTGCTCACAAGAGAGGAGA 57.999 50.000 0.00 0.00 44.98 3.71
3765 4399 2.319844 TGTGCTCACAAGAGAGGAGAA 58.680 47.619 0.00 0.00 44.98 2.87
3766 4400 2.298446 TGTGCTCACAAGAGAGGAGAAG 59.702 50.000 0.00 0.00 44.98 2.85
3767 4401 2.560542 GTGCTCACAAGAGAGGAGAAGA 59.439 50.000 0.00 0.00 44.98 2.87
3768 4402 3.006323 GTGCTCACAAGAGAGGAGAAGAA 59.994 47.826 0.00 0.00 44.98 2.52
3769 4403 3.257873 TGCTCACAAGAGAGGAGAAGAAG 59.742 47.826 0.00 0.00 44.98 2.85
3770 4404 3.509575 GCTCACAAGAGAGGAGAAGAAGA 59.490 47.826 0.00 0.00 44.98 2.87
3771 4405 4.160252 GCTCACAAGAGAGGAGAAGAAGAT 59.840 45.833 0.00 0.00 44.98 2.40
3772 4406 5.337491 GCTCACAAGAGAGGAGAAGAAGATT 60.337 44.000 0.00 0.00 44.98 2.40
3773 4407 6.678568 TCACAAGAGAGGAGAAGAAGATTT 57.321 37.500 0.00 0.00 0.00 2.17
3774 4408 7.578571 GCTCACAAGAGAGGAGAAGAAGATTTA 60.579 40.741 0.00 0.00 44.98 1.40
3775 4409 7.835822 TCACAAGAGAGGAGAAGAAGATTTAG 58.164 38.462 0.00 0.00 0.00 1.85
3776 4410 7.041107 CACAAGAGAGGAGAAGAAGATTTAGG 58.959 42.308 0.00 0.00 0.00 2.69
3777 4411 5.869649 AGAGAGGAGAAGAAGATTTAGGC 57.130 43.478 0.00 0.00 0.00 3.93
3778 4412 5.528337 AGAGAGGAGAAGAAGATTTAGGCT 58.472 41.667 0.00 0.00 0.00 4.58
3779 4413 5.963865 AGAGAGGAGAAGAAGATTTAGGCTT 59.036 40.000 0.00 0.00 0.00 4.35
3780 4414 5.988287 AGAGGAGAAGAAGATTTAGGCTTG 58.012 41.667 0.00 0.00 0.00 4.01
3781 4415 5.487131 AGAGGAGAAGAAGATTTAGGCTTGT 59.513 40.000 0.00 0.00 0.00 3.16
3782 4416 6.012945 AGAGGAGAAGAAGATTTAGGCTTGTT 60.013 38.462 0.00 0.00 32.34 2.83
3783 4417 6.176896 AGGAGAAGAAGATTTAGGCTTGTTC 58.823 40.000 0.00 0.00 42.59 3.18
3845 4479 5.633655 TTTTACTGTCTTGGGAGGTAACA 57.366 39.130 0.00 0.00 41.41 2.41
3846 4480 5.633655 TTTACTGTCTTGGGAGGTAACAA 57.366 39.130 0.00 0.00 41.41 2.83
3928 4562 6.921857 AGGTCAATTAGGTGTCGAATTATACG 59.078 38.462 0.00 0.00 29.27 3.06
3973 4607 2.362077 TCTTGTCTTTTGAGCCTTTGCC 59.638 45.455 0.00 0.00 38.69 4.52
3974 4608 0.667993 TGTCTTTTGAGCCTTTGCCG 59.332 50.000 0.00 0.00 38.69 5.69
3975 4609 0.951558 GTCTTTTGAGCCTTTGCCGA 59.048 50.000 0.00 0.00 38.69 5.54
3976 4610 1.541588 GTCTTTTGAGCCTTTGCCGAT 59.458 47.619 0.00 0.00 38.69 4.18
3983 4617 0.741221 AGCCTTTGCCGATCGAACTC 60.741 55.000 18.66 3.22 38.69 3.01
3989 4623 0.601057 TGCCGATCGAACTCTCAACA 59.399 50.000 18.66 0.00 0.00 3.33
3998 4632 4.380531 TCGAACTCTCAACAGAATTGCTT 58.619 39.130 0.00 0.00 0.00 3.91
4017 4651 0.320858 TTGTTGCCGGATTCGTAGCA 60.321 50.000 5.05 0.00 33.16 3.49
4018 4652 1.017177 TGTTGCCGGATTCGTAGCAC 61.017 55.000 5.05 0.00 34.35 4.40
4019 4653 1.017177 GTTGCCGGATTCGTAGCACA 61.017 55.000 5.05 0.00 34.35 4.57
4020 4654 0.739462 TTGCCGGATTCGTAGCACAG 60.739 55.000 5.05 0.00 34.35 3.66
4021 4655 2.526120 GCCGGATTCGTAGCACAGC 61.526 63.158 5.05 0.00 33.95 4.40
4022 4656 1.153647 CCGGATTCGTAGCACAGCA 60.154 57.895 0.00 0.00 33.95 4.41
4023 4657 1.148157 CCGGATTCGTAGCACAGCAG 61.148 60.000 0.00 0.00 33.95 4.24
4024 4658 1.756375 CGGATTCGTAGCACAGCAGC 61.756 60.000 0.00 0.00 0.00 5.25
4026 4660 0.649475 GATTCGTAGCACAGCAGCTG 59.351 55.000 21.54 21.54 46.11 4.24
4086 4720 1.803334 TTCGCCGAGTGCTAAAACAT 58.197 45.000 0.00 0.00 38.05 2.71
4093 4727 2.159627 CGAGTGCTAAAACATGGACACC 59.840 50.000 0.00 0.00 0.00 4.16
4095 4729 1.544246 GTGCTAAAACATGGACACCCC 59.456 52.381 0.00 0.00 0.00 4.95
4152 4790 1.299541 CCAGCTTCACGACAAACTGT 58.700 50.000 0.00 0.00 0.00 3.55
4153 4791 1.670811 CCAGCTTCACGACAAACTGTT 59.329 47.619 0.00 0.00 0.00 3.16
4382 5024 5.708736 TTATAACTGACATGTGGTCCCAT 57.291 39.130 1.15 0.25 46.38 4.00
4479 5123 4.132999 GCTCTCGGCAATTCTCCC 57.867 61.111 0.00 0.00 41.35 4.30
4480 5124 1.221840 GCTCTCGGCAATTCTCCCA 59.778 57.895 0.00 0.00 41.35 4.37
4485 5155 1.078214 CGGCAATTCTCCCAGCAGA 60.078 57.895 0.00 0.00 0.00 4.26
4530 5200 0.607489 AGCTTGTCTCGGCAATGCTT 60.607 50.000 4.82 0.00 32.87 3.91
4570 5240 0.396811 CTCTCGGAAAAGGTGTGGGT 59.603 55.000 0.00 0.00 0.00 4.51
4590 5260 3.514309 GGTACAACAGTAGTGTCTCCCAT 59.486 47.826 3.07 0.00 35.08 4.00
4598 5268 1.183549 AGTGTCTCCCATACGACCAC 58.816 55.000 0.00 0.00 0.00 4.16
4599 5269 0.892755 GTGTCTCCCATACGACCACA 59.107 55.000 0.00 0.00 0.00 4.17
4600 5270 1.480954 GTGTCTCCCATACGACCACAT 59.519 52.381 0.00 0.00 0.00 3.21
4601 5271 1.480545 TGTCTCCCATACGACCACATG 59.519 52.381 0.00 0.00 0.00 3.21
4602 5272 1.480954 GTCTCCCATACGACCACATGT 59.519 52.381 0.00 0.00 0.00 3.21
4603 5273 1.754803 TCTCCCATACGACCACATGTC 59.245 52.381 0.00 0.00 40.81 3.06
4604 5274 1.480545 CTCCCATACGACCACATGTCA 59.519 52.381 0.00 0.00 44.71 3.58
4605 5275 1.480545 TCCCATACGACCACATGTCAG 59.519 52.381 0.00 0.00 44.71 3.51
4606 5276 1.480545 CCCATACGACCACATGTCAGA 59.519 52.381 0.00 0.00 44.71 3.27
4607 5277 2.093711 CCCATACGACCACATGTCAGAA 60.094 50.000 0.00 0.00 44.71 3.02
4608 5278 3.190079 CCATACGACCACATGTCAGAAG 58.810 50.000 0.00 0.00 44.71 2.85
4609 5279 3.119137 CCATACGACCACATGTCAGAAGA 60.119 47.826 0.00 0.00 44.71 2.87
4610 5280 2.440539 ACGACCACATGTCAGAAGAC 57.559 50.000 0.00 0.00 44.71 3.01
4618 5288 4.923904 CACATGTCAGAAGACGACACGTG 61.924 52.174 15.48 15.48 46.87 4.49
4619 5289 3.546407 GTCAGAAGACGACACGTGT 57.454 52.632 23.64 23.64 41.37 4.49
4620 5290 1.396644 GTCAGAAGACGACACGTGTC 58.603 55.000 33.76 33.76 41.37 3.67
4621 5291 1.018910 TCAGAAGACGACACGTGTCA 58.981 50.000 39.14 20.52 44.99 3.58
4622 5292 1.002792 TCAGAAGACGACACGTGTCAG 60.003 52.381 39.14 32.68 44.99 3.51
4623 5293 0.317938 AGAAGACGACACGTGTCAGC 60.318 55.000 39.14 30.78 44.99 4.26
4624 5294 1.276145 GAAGACGACACGTGTCAGCC 61.276 60.000 39.14 28.31 44.99 4.85
4625 5295 1.735376 AAGACGACACGTGTCAGCCT 61.735 55.000 39.14 29.71 44.99 4.58
4626 5296 1.729838 GACGACACGTGTCAGCCTC 60.730 63.158 39.14 25.72 44.99 4.70
4627 5297 2.430921 CGACACGTGTCAGCCTCC 60.431 66.667 39.14 18.30 44.99 4.30
4628 5298 2.920645 CGACACGTGTCAGCCTCCT 61.921 63.158 39.14 9.33 44.99 3.69
4629 5299 1.583495 CGACACGTGTCAGCCTCCTA 61.583 60.000 39.14 0.00 44.99 2.94
4630 5300 0.109226 GACACGTGTCAGCCTCCTAC 60.109 60.000 37.16 11.94 44.18 3.18
4631 5301 1.215647 CACGTGTCAGCCTCCTACC 59.784 63.158 7.58 0.00 0.00 3.18
4632 5302 2.341101 ACGTGTCAGCCTCCTACCG 61.341 63.158 0.00 0.00 0.00 4.02
4633 5303 2.893398 GTGTCAGCCTCCTACCGG 59.107 66.667 0.00 0.00 0.00 5.28
4634 5304 1.982938 GTGTCAGCCTCCTACCGGT 60.983 63.158 13.98 13.98 0.00 5.28
4635 5305 1.229082 TGTCAGCCTCCTACCGGTT 60.229 57.895 15.04 0.00 0.00 4.44
4636 5306 1.255667 TGTCAGCCTCCTACCGGTTC 61.256 60.000 15.04 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 5.989168 ACTGACACGACAACATTTCTTATGA 59.011 36.000 0.00 0.00 0.00 2.15
86 87 3.944422 ACACTGACACGACAACATTTC 57.056 42.857 0.00 0.00 0.00 2.17
89 90 7.172532 ACATTAAATACACTGACACGACAACAT 59.827 33.333 0.00 0.00 0.00 2.71
175 176 1.405526 CCGGATGTGAAGGGTGTACAG 60.406 57.143 0.00 0.00 0.00 2.74
184 185 3.753272 AGAAAATGTGACCGGATGTGAAG 59.247 43.478 9.46 0.00 0.00 3.02
185 186 3.750371 AGAAAATGTGACCGGATGTGAA 58.250 40.909 9.46 0.00 0.00 3.18
211 212 3.936461 AGTATATTGGGGAGTGTGCCTA 58.064 45.455 0.00 0.00 0.00 3.93
229 230 7.504926 AATTGGGAGTAGTGTTGGAATAGTA 57.495 36.000 0.00 0.00 0.00 1.82
246 247 4.517453 CCTGTTTAGTTCGTGAAATTGGGA 59.483 41.667 0.00 0.00 0.00 4.37
269 270 1.104630 ACCGTGGCTAGTCTTAGAGC 58.895 55.000 0.00 0.00 38.00 4.09
286 289 3.697619 ACTGCTAAACTTACTCCCACC 57.302 47.619 0.00 0.00 0.00 4.61
297 300 4.491676 TGGACTCGATGTTACTGCTAAAC 58.508 43.478 0.00 0.00 0.00 2.01
502 511 9.516546 TCTAGGGATATGTGTATGTTACTAGTG 57.483 37.037 5.39 0.00 0.00 2.74
565 574 4.535781 TGAGGCTTTGCATGTTACCATAT 58.464 39.130 0.00 0.00 0.00 1.78
602 611 8.744568 TTACATGTCCAAATGCAATATGAGTA 57.255 30.769 0.00 0.00 0.00 2.59
660 669 5.055812 GCAATGAGTTAATGAGGAGAGAGG 58.944 45.833 0.00 0.00 0.00 3.69
699 708 5.171476 CAGTAACATCGAGTCCAACTCAAT 58.829 41.667 7.78 0.00 45.30 2.57
707 716 2.941453 TCAGCAGTAACATCGAGTCC 57.059 50.000 0.00 0.00 0.00 3.85
734 743 8.043429 ACTACCTTTAGACTAGCCATAGTAGA 57.957 38.462 0.00 0.00 42.46 2.59
796 809 5.241949 AGACTAGCCATAATGGAGAGTAACG 59.758 44.000 0.00 0.00 40.96 3.18
840 853 5.932619 TGGGGACGTATATAATCTCATGG 57.067 43.478 0.00 0.00 0.00 3.66
848 861 5.599242 TGTGTCATCTTGGGGACGTATATAA 59.401 40.000 0.00 0.00 36.83 0.98
858 871 2.862541 TGAACTTGTGTCATCTTGGGG 58.137 47.619 0.00 0.00 0.00 4.96
886 899 4.552166 TTTCGGAGCTTTCAAGTTTCAG 57.448 40.909 0.00 0.00 0.00 3.02
907 920 1.340017 CCAATGGGATCACGTGACCTT 60.340 52.381 22.71 13.69 35.59 3.50
908 921 0.253044 CCAATGGGATCACGTGACCT 59.747 55.000 22.71 5.74 35.59 3.85
939 952 3.062763 CTGTGCTCGTTTGACTTGAGAT 58.937 45.455 0.00 0.00 31.31 2.75
941 954 2.205074 ACTGTGCTCGTTTGACTTGAG 58.795 47.619 0.00 0.00 0.00 3.02
942 955 2.309528 ACTGTGCTCGTTTGACTTGA 57.690 45.000 0.00 0.00 0.00 3.02
943 956 2.221055 GGTACTGTGCTCGTTTGACTTG 59.779 50.000 0.00 0.00 0.00 3.16
944 957 2.159014 TGGTACTGTGCTCGTTTGACTT 60.159 45.455 0.00 0.00 0.00 3.01
945 958 1.411246 TGGTACTGTGCTCGTTTGACT 59.589 47.619 0.00 0.00 0.00 3.41
946 959 1.525619 GTGGTACTGTGCTCGTTTGAC 59.474 52.381 0.00 0.00 0.00 3.18
947 960 1.137282 TGTGGTACTGTGCTCGTTTGA 59.863 47.619 0.00 0.00 0.00 2.69
948 961 1.260561 GTGTGGTACTGTGCTCGTTTG 59.739 52.381 0.00 0.00 0.00 2.93
949 962 1.578583 GTGTGGTACTGTGCTCGTTT 58.421 50.000 0.00 0.00 0.00 3.60
979 992 2.280592 GGACACAAGGACCGCGTT 60.281 61.111 4.92 0.00 0.00 4.84
1212 1228 0.175760 CCGACGAACATGAGGGACAT 59.824 55.000 0.00 0.00 40.17 3.06
1301 1317 2.304761 GGGAAATGGGCCTACGATGATA 59.695 50.000 4.53 0.00 0.00 2.15
1311 1327 1.418264 GAGAGAGTAGGGAAATGGGCC 59.582 57.143 0.00 0.00 0.00 5.80
1330 1346 5.711976 TGAAGAGAGTGTGTGTATGATGAGA 59.288 40.000 0.00 0.00 0.00 3.27
1356 1381 5.854431 GAACAGAGTCCAGTTCTTCATTC 57.146 43.478 15.28 0.00 40.63 2.67
1364 1389 5.303971 CAAGAATCAGAACAGAGTCCAGTT 58.696 41.667 0.00 0.00 33.35 3.16
1365 1390 4.802248 GCAAGAATCAGAACAGAGTCCAGT 60.802 45.833 0.00 0.00 33.35 4.00
1366 1391 3.683822 GCAAGAATCAGAACAGAGTCCAG 59.316 47.826 0.00 0.00 33.35 3.86
1367 1392 3.326006 AGCAAGAATCAGAACAGAGTCCA 59.674 43.478 0.00 0.00 33.35 4.02
1369 1394 4.153835 CCAAGCAAGAATCAGAACAGAGTC 59.846 45.833 0.00 0.00 33.09 3.36
1370 1395 4.070716 CCAAGCAAGAATCAGAACAGAGT 58.929 43.478 0.00 0.00 0.00 3.24
1409 1434 2.528743 CCATGCCGATCTGCGACAC 61.529 63.158 4.58 0.00 44.57 3.67
1938 1963 2.426406 ATCATCGCAGAGGGCACGA 61.426 57.895 0.00 0.00 43.63 4.35
1951 1976 5.798132 TGCCTTACATACCAGATCATCATC 58.202 41.667 0.00 0.00 0.00 2.92
1981 2006 5.945784 TGAATCTGGGTGAGTATTTTTGAGG 59.054 40.000 0.00 0.00 0.00 3.86
2015 2040 3.615056 GCAACAAAACAGCCTACGTTTTT 59.385 39.130 0.00 0.00 42.41 1.94
2016 2041 3.183754 GCAACAAAACAGCCTACGTTTT 58.816 40.909 0.00 0.00 45.10 2.43
2041 2066 3.971305 TGAAATCCGGGTGTATGGTCTAT 59.029 43.478 0.00 0.00 0.00 1.98
2052 2077 5.946972 TGTAACATGTAAATGAAATCCGGGT 59.053 36.000 0.00 0.00 0.00 5.28
2092 2122 4.875536 GTGGTGCCTGTTTTTGAAGATTTT 59.124 37.500 0.00 0.00 0.00 1.82
2134 2178 1.345415 CTCCAAGCTGCACCCAAAAAT 59.655 47.619 1.02 0.00 0.00 1.82
2269 2313 5.009210 AGCTAGATCGAAGATGTGTCCTTAC 59.991 44.000 0.00 0.00 45.12 2.34
2270 2314 5.133941 AGCTAGATCGAAGATGTGTCCTTA 58.866 41.667 0.00 0.00 45.12 2.69
2271 2315 3.957497 AGCTAGATCGAAGATGTGTCCTT 59.043 43.478 0.00 0.00 45.12 3.36
2272 2316 3.561143 AGCTAGATCGAAGATGTGTCCT 58.439 45.455 0.00 0.00 45.12 3.85
2273 2317 5.216648 GTTAGCTAGATCGAAGATGTGTCC 58.783 45.833 0.00 0.00 45.12 4.02
2274 2318 5.009210 AGGTTAGCTAGATCGAAGATGTGTC 59.991 44.000 0.00 0.00 45.12 3.67
2275 2319 4.890581 AGGTTAGCTAGATCGAAGATGTGT 59.109 41.667 0.00 0.00 45.12 3.72
2284 2328 5.297278 ACACTCTGTTAGGTTAGCTAGATCG 59.703 44.000 0.00 0.00 0.00 3.69
2398 2828 9.623350 CTTATATTAGTTTACGAAGGGAGTAGC 57.377 37.037 0.00 0.00 0.00 3.58
2402 2832 7.537991 CGCTCTTATATTAGTTTACGAAGGGAG 59.462 40.741 0.00 0.00 0.00 4.30
2403 2833 7.013655 ACGCTCTTATATTAGTTTACGAAGGGA 59.986 37.037 0.00 0.00 0.00 4.20
2404 2834 7.144000 ACGCTCTTATATTAGTTTACGAAGGG 58.856 38.462 0.00 0.00 0.00 3.95
2405 2835 8.571461 AACGCTCTTATATTAGTTTACGAAGG 57.429 34.615 0.00 0.00 0.00 3.46
2421 2851 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
2422 2852 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
2423 2853 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
2424 2854 9.733219 ATTACTACTTTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 40.05 5.03
2425 2855 9.733219 GATTACTACTTTAGTGATCTAAACGCT 57.267 33.333 9.68 0.00 44.10 5.07
2433 2863 9.733219 AGCGTTTAGATTACTACTTTAGTGATC 57.267 33.333 9.14 9.14 46.38 2.92
2435 2865 8.954350 AGAGCGTTTAGATTACTACTTTAGTGA 58.046 33.333 0.00 0.00 39.81 3.41
2436 2866 9.570488 AAGAGCGTTTAGATTACTACTTTAGTG 57.430 33.333 0.00 0.00 39.81 2.74
2453 2883 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
2454 2884 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
2455 2885 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
2456 2886 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
2457 2887 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
2461 2891 9.940974 TGGTACTCCCTCTGTAAACTAATATAA 57.059 33.333 0.00 0.00 0.00 0.98
2462 2892 9.359653 GTGGTACTCCCTCTGTAAACTAATATA 57.640 37.037 0.00 0.00 0.00 0.86
2463 2893 8.066247 AGTGGTACTCCCTCTGTAAACTAATAT 58.934 37.037 0.00 0.00 35.71 1.28
2464 2894 7.416731 AGTGGTACTCCCTCTGTAAACTAATA 58.583 38.462 0.00 0.00 35.71 0.98
2465 2895 6.262207 AGTGGTACTCCCTCTGTAAACTAAT 58.738 40.000 0.00 0.00 35.71 1.73
2466 2896 5.648247 AGTGGTACTCCCTCTGTAAACTAA 58.352 41.667 0.00 0.00 35.71 2.24
2467 2897 5.222192 TGAGTGGTACTCCCTCTGTAAACTA 60.222 44.000 6.52 0.00 44.44 2.24
2468 2898 4.087907 GAGTGGTACTCCCTCTGTAAACT 58.912 47.826 0.00 0.00 39.28 2.66
2469 2899 3.830755 TGAGTGGTACTCCCTCTGTAAAC 59.169 47.826 6.52 0.00 44.44 2.01
2470 2900 4.122337 TGAGTGGTACTCCCTCTGTAAA 57.878 45.455 6.52 0.00 44.44 2.01
2471 2901 3.820195 TGAGTGGTACTCCCTCTGTAA 57.180 47.619 6.52 0.00 44.44 2.41
2472 2902 3.820195 TTGAGTGGTACTCCCTCTGTA 57.180 47.619 6.52 0.00 44.44 2.74
2473 2903 2.696526 TTGAGTGGTACTCCCTCTGT 57.303 50.000 6.52 0.00 44.44 3.41
2474 2904 3.385111 GGTATTGAGTGGTACTCCCTCTG 59.615 52.174 6.52 0.00 44.44 3.35
2475 2905 3.272551 AGGTATTGAGTGGTACTCCCTCT 59.727 47.826 6.52 0.00 44.44 3.69
2476 2906 3.644335 AGGTATTGAGTGGTACTCCCTC 58.356 50.000 6.52 0.00 44.44 4.30
2477 2907 3.778622 AGGTATTGAGTGGTACTCCCT 57.221 47.619 6.52 3.23 44.44 4.20
2478 2908 4.284178 TGTAGGTATTGAGTGGTACTCCC 58.716 47.826 6.52 1.12 44.44 4.30
2479 2909 5.655532 TCTTGTAGGTATTGAGTGGTACTCC 59.344 44.000 6.52 0.00 44.44 3.85
2480 2910 6.770746 TCTTGTAGGTATTGAGTGGTACTC 57.229 41.667 2.11 2.11 45.26 2.59
2481 2911 7.735326 ATTCTTGTAGGTATTGAGTGGTACT 57.265 36.000 0.00 0.00 0.00 2.73
2482 2912 9.310716 GTAATTCTTGTAGGTATTGAGTGGTAC 57.689 37.037 0.00 0.00 0.00 3.34
2503 2933 6.324819 CGATCAAATTTCCAGCAGTGTAATT 58.675 36.000 0.00 0.00 0.00 1.40
2628 3068 2.695314 CCTAGGAACAAGGCGATGC 58.305 57.895 1.05 0.00 0.00 3.91
2642 3082 1.134965 CAAGGTCAGGACGAAGCCTAG 60.135 57.143 0.00 0.00 36.22 3.02
2712 3152 0.179084 AATGTATGCCACGACCTCCG 60.179 55.000 0.00 0.00 45.44 4.63
2937 3379 7.601886 TCAAAGTTTTTCTTTTGCAGATGACAA 59.398 29.630 0.00 0.00 42.95 3.18
2961 3403 6.048732 TGTCCTTTCACTATGCTACATTCA 57.951 37.500 0.00 0.00 0.00 2.57
2970 3412 7.443477 AGAGATGATCATGTCCTTTCACTATG 58.557 38.462 24.94 0.00 32.06 2.23
2980 3422 7.048629 TCTAAGTTGAGAGATGATCATGTCC 57.951 40.000 24.94 17.78 32.06 4.02
3001 3443 5.221601 GGGAGAAGAACATCATCAGCATCTA 60.222 44.000 0.00 0.00 0.00 1.98
3054 3496 1.798735 CACTTTGATGAGGCTGCCG 59.201 57.895 13.96 0.00 0.00 5.69
3129 3571 7.339721 TGGTAGAATTTTGTTGGTGTTCAGTAA 59.660 33.333 0.00 0.00 0.00 2.24
3130 3572 6.829298 TGGTAGAATTTTGTTGGTGTTCAGTA 59.171 34.615 0.00 0.00 0.00 2.74
3165 3611 7.294584 CCTGGCTAGGCTAGACTCTATATATT 58.705 42.308 26.94 0.00 39.54 1.28
3166 3612 6.183361 CCCTGGCTAGGCTAGACTCTATATAT 60.183 46.154 26.94 0.00 43.16 0.86
3167 3613 5.132985 CCCTGGCTAGGCTAGACTCTATATA 59.867 48.000 26.94 5.09 43.16 0.86
3168 3614 4.079443 CCCTGGCTAGGCTAGACTCTATAT 60.079 50.000 26.94 0.00 43.16 0.86
3217 3663 0.174162 GCCTTGGTAGCCTGCAATTG 59.826 55.000 0.00 0.00 0.00 2.32
3282 3728 5.048782 TGAAACTTGTACCATGTGATGCTTC 60.049 40.000 0.00 0.00 0.00 3.86
3381 4015 3.254166 ACGCAGCATTTTTCTCTCACAAT 59.746 39.130 0.00 0.00 0.00 2.71
3401 4035 0.578683 CTGCCGTATCAATCAGCACG 59.421 55.000 0.00 0.00 0.00 5.34
3464 4098 2.534903 GCTAATCCGTCCGGCTTGC 61.535 63.158 0.00 3.72 34.68 4.01
3591 4225 4.879545 AGTCTGCGTTCTTTGGTTTCTTAA 59.120 37.500 0.00 0.00 0.00 1.85
3630 4264 1.251527 GGACCAGACTCTGCTCGGAA 61.252 60.000 0.00 0.00 0.00 4.30
3632 4266 1.943116 CTGGACCAGACTCTGCTCGG 61.943 65.000 17.22 0.00 32.44 4.63
3633 4267 1.510383 CTGGACCAGACTCTGCTCG 59.490 63.158 17.22 0.00 32.44 5.03
3639 4273 1.517242 CAAAGTGCTGGACCAGACTC 58.483 55.000 26.25 15.89 32.44 3.36
3658 4292 1.343069 ACAGAACAGACCAGAGTCCC 58.657 55.000 0.00 0.00 44.72 4.46
3686 4320 6.478344 GTGCCATCATGTTTGTTACAAGAAAA 59.522 34.615 0.00 0.00 40.89 2.29
3687 4321 5.982516 GTGCCATCATGTTTGTTACAAGAAA 59.017 36.000 0.00 0.00 40.89 2.52
3688 4322 5.068329 TGTGCCATCATGTTTGTTACAAGAA 59.932 36.000 0.00 0.00 40.89 2.52
3689 4323 4.582240 TGTGCCATCATGTTTGTTACAAGA 59.418 37.500 0.00 0.00 40.89 3.02
3690 4324 4.869215 TGTGCCATCATGTTTGTTACAAG 58.131 39.130 0.00 0.00 40.89 3.16
3691 4325 4.926140 TGTGCCATCATGTTTGTTACAA 57.074 36.364 0.00 0.00 40.89 2.41
3692 4326 5.125257 CCTATGTGCCATCATGTTTGTTACA 59.875 40.000 0.00 0.94 41.97 2.41
3693 4327 5.356751 TCCTATGTGCCATCATGTTTGTTAC 59.643 40.000 0.00 0.00 0.00 2.50
3694 4328 5.504853 TCCTATGTGCCATCATGTTTGTTA 58.495 37.500 0.00 0.00 0.00 2.41
3695 4329 4.343231 TCCTATGTGCCATCATGTTTGTT 58.657 39.130 0.00 0.00 0.00 2.83
3696 4330 3.966979 TCCTATGTGCCATCATGTTTGT 58.033 40.909 0.00 0.00 0.00 2.83
3697 4331 4.641541 TCTTCCTATGTGCCATCATGTTTG 59.358 41.667 0.00 0.00 0.00 2.93
3698 4332 4.858850 TCTTCCTATGTGCCATCATGTTT 58.141 39.130 0.00 0.00 0.00 2.83
3699 4333 4.458397 CTCTTCCTATGTGCCATCATGTT 58.542 43.478 0.00 0.00 0.00 2.71
3700 4334 3.746751 GCTCTTCCTATGTGCCATCATGT 60.747 47.826 0.00 0.00 0.00 3.21
3701 4335 2.812591 GCTCTTCCTATGTGCCATCATG 59.187 50.000 0.00 0.00 0.00 3.07
3702 4336 2.709934 AGCTCTTCCTATGTGCCATCAT 59.290 45.455 0.00 0.00 0.00 2.45
3703 4337 2.121948 AGCTCTTCCTATGTGCCATCA 58.878 47.619 0.00 0.00 0.00 3.07
3704 4338 2.926778 AGCTCTTCCTATGTGCCATC 57.073 50.000 0.00 0.00 0.00 3.51
3705 4339 3.549794 GAAAGCTCTTCCTATGTGCCAT 58.450 45.455 0.00 0.00 0.00 4.40
3706 4340 2.356125 GGAAAGCTCTTCCTATGTGCCA 60.356 50.000 16.08 0.00 35.73 4.92
3707 4341 2.092699 AGGAAAGCTCTTCCTATGTGCC 60.093 50.000 21.50 0.00 46.48 5.01
3708 4342 3.274095 AGGAAAGCTCTTCCTATGTGC 57.726 47.619 21.50 0.00 46.48 4.57
3713 4347 4.639310 CACTACGTAGGAAAGCTCTTCCTA 59.361 45.833 25.63 22.86 46.48 2.94
3715 4349 3.442977 TCACTACGTAGGAAAGCTCTTCC 59.557 47.826 25.63 15.76 38.86 3.46
3716 4350 4.698583 TCACTACGTAGGAAAGCTCTTC 57.301 45.455 25.63 0.00 0.00 2.87
3717 4351 4.951094 AGATCACTACGTAGGAAAGCTCTT 59.049 41.667 25.63 4.56 0.00 2.85
3718 4352 4.336993 CAGATCACTACGTAGGAAAGCTCT 59.663 45.833 25.63 15.18 0.00 4.09
3719 4353 4.335874 TCAGATCACTACGTAGGAAAGCTC 59.664 45.833 25.63 13.52 0.00 4.09
3720 4354 4.270834 TCAGATCACTACGTAGGAAAGCT 58.729 43.478 25.63 15.11 0.00 3.74
3721 4355 4.335874 TCTCAGATCACTACGTAGGAAAGC 59.664 45.833 25.63 13.22 0.00 3.51
3722 4356 6.038825 ACATCTCAGATCACTACGTAGGAAAG 59.961 42.308 25.63 12.74 0.00 2.62
3723 4357 5.886474 ACATCTCAGATCACTACGTAGGAAA 59.114 40.000 25.63 11.33 0.00 3.13
3724 4358 5.297029 CACATCTCAGATCACTACGTAGGAA 59.703 44.000 25.63 13.77 0.00 3.36
3725 4359 4.816925 CACATCTCAGATCACTACGTAGGA 59.183 45.833 25.63 19.11 0.00 2.94
3726 4360 4.555708 GCACATCTCAGATCACTACGTAGG 60.556 50.000 25.63 14.76 0.00 3.18
3727 4361 4.274705 AGCACATCTCAGATCACTACGTAG 59.725 45.833 20.97 20.97 0.00 3.51
3728 4362 4.200092 AGCACATCTCAGATCACTACGTA 58.800 43.478 0.00 0.00 0.00 3.57
3729 4363 3.020274 AGCACATCTCAGATCACTACGT 58.980 45.455 0.00 0.00 0.00 3.57
3730 4364 3.065925 TGAGCACATCTCAGATCACTACG 59.934 47.826 0.00 0.00 46.34 3.51
3731 4365 4.645762 TGAGCACATCTCAGATCACTAC 57.354 45.455 0.00 0.00 46.34 2.73
3741 4375 2.495270 TCCTCTCTTGTGAGCACATCTC 59.505 50.000 3.90 0.00 41.52 2.75
3742 4376 2.496871 CTCCTCTCTTGTGAGCACATCT 59.503 50.000 3.90 0.00 41.52 2.90
3743 4377 2.495270 TCTCCTCTCTTGTGAGCACATC 59.505 50.000 3.90 0.00 41.52 3.06
3744 4378 2.533916 TCTCCTCTCTTGTGAGCACAT 58.466 47.619 3.90 0.00 41.52 3.21
3745 4379 2.001076 TCTCCTCTCTTGTGAGCACA 57.999 50.000 0.00 0.00 40.03 4.57
3746 4380 2.560542 TCTTCTCCTCTCTTGTGAGCAC 59.439 50.000 0.00 0.00 40.03 4.40
3747 4381 2.881734 TCTTCTCCTCTCTTGTGAGCA 58.118 47.619 0.00 0.00 40.03 4.26
3748 4382 3.509575 TCTTCTTCTCCTCTCTTGTGAGC 59.490 47.826 0.00 0.00 40.03 4.26
3749 4383 5.920193 ATCTTCTTCTCCTCTCTTGTGAG 57.080 43.478 0.00 0.00 41.51 3.51
3750 4384 6.678568 AAATCTTCTTCTCCTCTCTTGTGA 57.321 37.500 0.00 0.00 0.00 3.58
3751 4385 7.041107 CCTAAATCTTCTTCTCCTCTCTTGTG 58.959 42.308 0.00 0.00 0.00 3.33
3752 4386 6.351796 GCCTAAATCTTCTTCTCCTCTCTTGT 60.352 42.308 0.00 0.00 0.00 3.16
3753 4387 6.048509 GCCTAAATCTTCTTCTCCTCTCTTG 58.951 44.000 0.00 0.00 0.00 3.02
3754 4388 5.963865 AGCCTAAATCTTCTTCTCCTCTCTT 59.036 40.000 0.00 0.00 0.00 2.85
3755 4389 5.528337 AGCCTAAATCTTCTTCTCCTCTCT 58.472 41.667 0.00 0.00 0.00 3.10
3756 4390 5.869649 AGCCTAAATCTTCTTCTCCTCTC 57.130 43.478 0.00 0.00 0.00 3.20
3757 4391 5.487131 ACAAGCCTAAATCTTCTTCTCCTCT 59.513 40.000 0.00 0.00 0.00 3.69
3758 4392 5.739959 ACAAGCCTAAATCTTCTTCTCCTC 58.260 41.667 0.00 0.00 0.00 3.71
3759 4393 5.770685 ACAAGCCTAAATCTTCTTCTCCT 57.229 39.130 0.00 0.00 0.00 3.69
3760 4394 6.176896 AGAACAAGCCTAAATCTTCTTCTCC 58.823 40.000 0.00 0.00 27.42 3.71
3761 4395 7.680442 AAGAACAAGCCTAAATCTTCTTCTC 57.320 36.000 0.00 0.00 30.90 2.87
3762 4396 9.746457 AATAAGAACAAGCCTAAATCTTCTTCT 57.254 29.630 0.00 0.00 32.62 2.85
3822 4456 6.003859 TGTTACCTCCCAAGACAGTAAAAA 57.996 37.500 0.00 0.00 0.00 1.94
3823 4457 5.633655 TGTTACCTCCCAAGACAGTAAAA 57.366 39.130 0.00 0.00 0.00 1.52
3824 4458 5.367352 TCTTGTTACCTCCCAAGACAGTAAA 59.633 40.000 0.00 0.00 41.47 2.01
3825 4459 4.903049 TCTTGTTACCTCCCAAGACAGTAA 59.097 41.667 0.00 0.00 41.47 2.24
3826 4460 4.485875 TCTTGTTACCTCCCAAGACAGTA 58.514 43.478 0.00 0.00 41.47 2.74
3827 4461 3.314693 TCTTGTTACCTCCCAAGACAGT 58.685 45.455 0.00 0.00 41.47 3.55
3828 4462 3.307059 CCTCTTGTTACCTCCCAAGACAG 60.307 52.174 0.00 0.00 41.47 3.51
3829 4463 2.637872 CCTCTTGTTACCTCCCAAGACA 59.362 50.000 0.00 0.00 41.47 3.41
3830 4464 2.638363 ACCTCTTGTTACCTCCCAAGAC 59.362 50.000 0.00 0.00 41.47 3.01
3831 4465 2.986050 ACCTCTTGTTACCTCCCAAGA 58.014 47.619 0.00 0.00 43.47 3.02
3832 4466 3.055312 GGTACCTCTTGTTACCTCCCAAG 60.055 52.174 4.06 0.00 39.50 3.61
3833 4467 2.908351 GGTACCTCTTGTTACCTCCCAA 59.092 50.000 4.06 0.00 0.00 4.12
3834 4468 2.158127 TGGTACCTCTTGTTACCTCCCA 60.158 50.000 14.36 0.00 33.90 4.37
3835 4469 2.235650 GTGGTACCTCTTGTTACCTCCC 59.764 54.545 14.36 0.00 33.90 4.30
3836 4470 2.235650 GGTGGTACCTCTTGTTACCTCC 59.764 54.545 14.36 3.74 38.53 4.30
3837 4471 2.094338 CGGTGGTACCTCTTGTTACCTC 60.094 54.545 14.36 0.00 35.66 3.85
3838 4472 1.897802 CGGTGGTACCTCTTGTTACCT 59.102 52.381 14.36 0.00 35.66 3.08
3839 4473 1.895131 TCGGTGGTACCTCTTGTTACC 59.105 52.381 14.36 9.30 35.66 2.85
3840 4474 3.665745 TTCGGTGGTACCTCTTGTTAC 57.334 47.619 14.36 0.15 35.66 2.50
3841 4475 4.895668 ATTTCGGTGGTACCTCTTGTTA 57.104 40.909 14.36 0.00 35.66 2.41
3842 4476 3.782656 ATTTCGGTGGTACCTCTTGTT 57.217 42.857 14.36 0.00 35.66 2.83
3843 4477 6.155737 AGTTATATTTCGGTGGTACCTCTTGT 59.844 38.462 14.36 0.00 35.66 3.16
3844 4478 6.579865 AGTTATATTTCGGTGGTACCTCTTG 58.420 40.000 14.36 6.91 35.66 3.02
3845 4479 6.803366 AGTTATATTTCGGTGGTACCTCTT 57.197 37.500 14.36 0.00 35.66 2.85
3846 4480 6.835488 TGTAGTTATATTTCGGTGGTACCTCT 59.165 38.462 14.36 0.00 35.66 3.69
3928 4562 5.181748 ACTGACTGAATTTGGATAGACTGC 58.818 41.667 0.00 0.00 0.00 4.40
3973 4607 4.491602 GCAATTCTGTTGAGAGTTCGATCG 60.492 45.833 9.36 9.36 0.00 3.69
3974 4608 4.629200 AGCAATTCTGTTGAGAGTTCGATC 59.371 41.667 0.00 0.00 0.00 3.69
3975 4609 4.573900 AGCAATTCTGTTGAGAGTTCGAT 58.426 39.130 0.00 0.00 0.00 3.59
3976 4610 3.995199 AGCAATTCTGTTGAGAGTTCGA 58.005 40.909 0.00 0.00 0.00 3.71
3989 4623 1.327303 TCCGGCAACAAAGCAATTCT 58.673 45.000 0.00 0.00 35.83 2.40
3998 4632 0.320858 TGCTACGAATCCGGCAACAA 60.321 50.000 0.00 0.00 40.78 2.83
4017 4651 0.602106 CAGTAGTGTGCAGCTGCTGT 60.602 55.000 36.61 21.09 40.30 4.40
4018 4652 1.296755 CCAGTAGTGTGCAGCTGCTG 61.297 60.000 36.61 24.80 43.27 4.41
4019 4653 1.004080 CCAGTAGTGTGCAGCTGCT 60.004 57.895 36.61 20.81 42.66 4.24
4020 4654 0.603707 TTCCAGTAGTGTGCAGCTGC 60.604 55.000 31.89 31.89 42.50 5.25
4021 4655 2.105006 ATTCCAGTAGTGTGCAGCTG 57.895 50.000 10.11 10.11 0.00 4.24
4022 4656 2.867109 AATTCCAGTAGTGTGCAGCT 57.133 45.000 0.00 0.00 0.00 4.24
4023 4657 3.253188 TGAAAATTCCAGTAGTGTGCAGC 59.747 43.478 0.00 0.00 0.00 5.25
4024 4658 4.275689 TGTGAAAATTCCAGTAGTGTGCAG 59.724 41.667 0.00 0.00 0.00 4.41
4025 4659 4.203226 TGTGAAAATTCCAGTAGTGTGCA 58.797 39.130 0.00 0.00 0.00 4.57
4026 4660 4.829064 TGTGAAAATTCCAGTAGTGTGC 57.171 40.909 0.00 0.00 0.00 4.57
4086 4720 0.693622 TTATCTTTGCGGGGTGTCCA 59.306 50.000 0.00 0.00 34.36 4.02
4093 4727 4.756642 TCTCAGCATTATTATCTTTGCGGG 59.243 41.667 0.00 0.00 40.00 6.13
4095 4729 6.201615 TGACTCTCAGCATTATTATCTTTGCG 59.798 38.462 0.00 0.00 40.00 4.85
4152 4790 2.612212 GAGACAGTGACGGCAAAGAAAA 59.388 45.455 0.00 0.00 0.00 2.29
4153 4791 2.210116 GAGACAGTGACGGCAAAGAAA 58.790 47.619 0.00 0.00 0.00 2.52
4302 4942 0.657368 CTTTGCCGAGTGTCGTTTGC 60.657 55.000 0.00 0.00 38.40 3.68
4351 4993 7.665559 ACCACATGTCAGTTATAAAGAACACAT 59.334 33.333 0.00 0.00 30.25 3.21
4362 5004 4.272489 CAATGGGACCACATGTCAGTTAT 58.728 43.478 0.00 0.00 46.38 1.89
4439 5083 2.287909 GCTCTCGGCAAAGATATCGTCT 60.288 50.000 0.00 0.00 41.35 4.18
4479 5123 7.783090 AAGATATGTAAACTGTCATCTGCTG 57.217 36.000 0.00 0.00 0.00 4.41
4480 5124 7.201679 GCAAAGATATGTAAACTGTCATCTGCT 60.202 37.037 0.00 0.00 0.00 4.24
4485 5155 6.112734 TCGGCAAAGATATGTAAACTGTCAT 58.887 36.000 0.00 0.00 0.00 3.06
4530 5200 0.396435 TGCTCTCGGAAAAGAAGGCA 59.604 50.000 0.00 0.00 0.00 4.75
4570 5240 4.397103 CGTATGGGAGACACTACTGTTGTA 59.603 45.833 0.00 0.00 0.00 2.41
4599 5269 1.337071 ACACGTGTCGTCTTCTGACAT 59.663 47.619 17.22 0.00 46.98 3.06
4600 5270 0.736636 ACACGTGTCGTCTTCTGACA 59.263 50.000 17.22 0.00 43.68 3.58
4601 5271 1.396644 GACACGTGTCGTCTTCTGAC 58.603 55.000 31.03 6.94 38.32 3.51
4602 5272 3.839654 GACACGTGTCGTCTTCTGA 57.160 52.632 31.03 0.00 38.32 3.27
4611 5281 0.109226 GTAGGAGGCTGACACGTGTC 60.109 60.000 36.01 36.01 44.97 3.67
4612 5282 1.533469 GGTAGGAGGCTGACACGTGT 61.533 60.000 23.64 23.64 0.00 4.49
4613 5283 1.215647 GGTAGGAGGCTGACACGTG 59.784 63.158 15.48 15.48 0.00 4.49
4614 5284 2.341101 CGGTAGGAGGCTGACACGT 61.341 63.158 0.00 0.00 0.00 4.49
4615 5285 2.490217 CGGTAGGAGGCTGACACG 59.510 66.667 0.00 0.00 0.00 4.49
4616 5286 1.542187 AACCGGTAGGAGGCTGACAC 61.542 60.000 8.00 0.00 41.02 3.67
4617 5287 1.229082 AACCGGTAGGAGGCTGACA 60.229 57.895 8.00 0.00 41.02 3.58
4618 5288 1.516423 GAACCGGTAGGAGGCTGAC 59.484 63.158 8.00 0.00 41.02 3.51
4619 5289 4.029472 GAACCGGTAGGAGGCTGA 57.971 61.111 8.00 0.00 41.02 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.