Multiple sequence alignment - TraesCS7A01G032000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G032000 chr7A 100.000 3893 0 0 1 3893 13196501 13192609 0.000000e+00 7190.0
1 TraesCS7A01G032000 chr7A 93.525 695 34 4 2223 2912 13626728 13626040 0.000000e+00 1024.0
2 TraesCS7A01G032000 chr7A 99.020 510 5 0 1 510 13203503 13202994 0.000000e+00 915.0
3 TraesCS7A01G032000 chr7A 97.059 510 15 0 1 510 728519032 728518523 0.000000e+00 859.0
4 TraesCS7A01G032000 chr7A 96.857 509 15 1 1 509 728506706 728506199 0.000000e+00 850.0
5 TraesCS7A01G032000 chr7A 85.544 754 59 23 1439 2164 13627488 13626757 0.000000e+00 743.0
6 TraesCS7A01G032000 chr7A 81.858 689 85 29 2646 3303 2997745 2998424 9.510000e-151 544.0
7 TraesCS7A01G032000 chr7A 81.333 675 87 21 2649 3309 3385848 3385199 2.680000e-141 512.0
8 TraesCS7A01G032000 chr7A 88.663 344 35 4 2200 2539 3386199 3385856 2.160000e-112 416.0
9 TraesCS7A01G032000 chr7A 87.032 347 44 1 2194 2539 2997394 2997740 1.310000e-104 390.0
10 TraesCS7A01G032000 chr7D 89.278 1968 113 32 1441 3363 13719719 13717805 0.000000e+00 2375.0
11 TraesCS7A01G032000 chr7D 87.599 379 33 5 988 1359 13734638 13734267 1.000000e-115 427.0
12 TraesCS7A01G032000 chr7D 87.898 314 20 2 1924 2228 13720887 13720583 1.720000e-93 353.0
13 TraesCS7A01G032000 chr7D 81.978 455 38 22 988 1440 13720174 13719762 2.880000e-91 346.0
14 TraesCS7A01G032000 chr7D 86.142 267 25 9 3636 3893 13717126 13716863 1.070000e-70 278.0
15 TraesCS7A01G032000 chr7D 86.381 257 25 5 1525 1779 13721128 13720880 4.960000e-69 272.0
16 TraesCS7A01G032000 chr7D 87.413 143 13 4 1551 1689 3726442 3726583 4.030000e-35 159.0
17 TraesCS7A01G032000 chr4A 94.128 1175 57 7 2191 3354 722838887 722840060 0.000000e+00 1777.0
18 TraesCS7A01G032000 chr4A 94.930 710 31 2 2271 2975 722906199 722905490 0.000000e+00 1107.0
19 TraesCS7A01G032000 chr4A 97.255 510 11 1 2 508 617640899 617640390 0.000000e+00 861.0
20 TraesCS7A01G032000 chr4A 96.686 513 14 1 1 510 617647909 617647397 0.000000e+00 850.0
21 TraesCS7A01G032000 chr4A 84.929 637 50 20 841 1440 722837753 722838380 1.550000e-168 603.0
22 TraesCS7A01G032000 chr4A 86.900 458 41 9 988 1440 722906827 722906384 2.700000e-136 496.0
23 TraesCS7A01G032000 chr4A 82.100 419 53 15 1440 1845 722838422 722838831 4.820000e-89 339.0
24 TraesCS7A01G032000 chr6A 96.869 511 15 1 1 510 517301647 517301137 0.000000e+00 854.0
25 TraesCS7A01G032000 chr6A 96.680 512 16 1 1 511 517294625 517294114 0.000000e+00 850.0
26 TraesCS7A01G032000 chr6A 80.519 77 15 0 512 588 502114343 502114267 4.200000e-05 60.2
27 TraesCS7A01G032000 chr2A 96.863 510 16 0 1 510 196023069 196023578 0.000000e+00 854.0
28 TraesCS7A01G032000 chr5A 96.857 509 15 1 1 508 629730696 629730188 0.000000e+00 850.0
29 TraesCS7A01G032000 chr2B 89.024 82 6 3 512 592 129693722 129693643 8.900000e-17 99.0
30 TraesCS7A01G032000 chr2B 96.774 31 1 0 509 539 390557978 390558008 7.000000e-03 52.8
31 TraesCS7A01G032000 chr2D 88.000 50 6 0 509 558 322418560 322418609 4.200000e-05 60.2
32 TraesCS7A01G032000 chr1D 100.000 29 0 0 510 538 4534136 4534164 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G032000 chr7A 13192609 13196501 3892 True 7190.000000 7190 100.000000 1 3893 1 chr7A.!!$R1 3892
1 TraesCS7A01G032000 chr7A 13202994 13203503 509 True 915.000000 915 99.020000 1 510 1 chr7A.!!$R2 509
2 TraesCS7A01G032000 chr7A 13626040 13627488 1448 True 883.500000 1024 89.534500 1439 2912 2 chr7A.!!$R6 1473
3 TraesCS7A01G032000 chr7A 728518523 728519032 509 True 859.000000 859 97.059000 1 510 1 chr7A.!!$R4 509
4 TraesCS7A01G032000 chr7A 728506199 728506706 507 True 850.000000 850 96.857000 1 509 1 chr7A.!!$R3 508
5 TraesCS7A01G032000 chr7A 2997394 2998424 1030 False 467.000000 544 84.445000 2194 3303 2 chr7A.!!$F1 1109
6 TraesCS7A01G032000 chr7A 3385199 3386199 1000 True 464.000000 512 84.998000 2200 3309 2 chr7A.!!$R5 1109
7 TraesCS7A01G032000 chr7D 13716863 13721128 4265 True 724.800000 2375 86.335400 988 3893 5 chr7D.!!$R2 2905
8 TraesCS7A01G032000 chr4A 722837753 722840060 2307 False 906.333333 1777 87.052333 841 3354 3 chr4A.!!$F1 2513
9 TraesCS7A01G032000 chr4A 617640390 617640899 509 True 861.000000 861 97.255000 2 508 1 chr4A.!!$R1 506
10 TraesCS7A01G032000 chr4A 617647397 617647909 512 True 850.000000 850 96.686000 1 510 1 chr4A.!!$R2 509
11 TraesCS7A01G032000 chr4A 722905490 722906827 1337 True 801.500000 1107 90.915000 988 2975 2 chr4A.!!$R3 1987
12 TraesCS7A01G032000 chr6A 517301137 517301647 510 True 854.000000 854 96.869000 1 510 1 chr6A.!!$R3 509
13 TraesCS7A01G032000 chr6A 517294114 517294625 511 True 850.000000 850 96.680000 1 511 1 chr6A.!!$R2 510
14 TraesCS7A01G032000 chr2A 196023069 196023578 509 False 854.000000 854 96.863000 1 510 1 chr2A.!!$F1 509
15 TraesCS7A01G032000 chr5A 629730188 629730696 508 True 850.000000 850 96.857000 1 508 1 chr5A.!!$R1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
529 536 0.032515 TAGGGCATCTCCAACTCCGA 60.033 55.0 0.00 0.0 36.21 4.55 F
535 542 0.041238 ATCTCCAACTCCGACCCTCA 59.959 55.0 0.00 0.0 0.00 3.86 F
540 547 0.107831 CAACTCCGACCCTCAAACCA 59.892 55.0 0.00 0.0 0.00 3.67 F
561 568 0.172578 CCGTAACAGTCTGGATCGCA 59.827 55.0 4.53 0.0 0.00 5.10 F
868 875 0.173708 GAGAGGGAGCGTACCTGTTG 59.826 60.0 1.50 0.0 38.79 3.33 F
1177 1216 0.174617 CTGACCGAGCTTCCTTCCTC 59.825 60.0 0.00 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2080 2228 0.107456 CCAAGCTGTGTCTGACCAGT 59.893 55.000 20.09 9.87 0.00 4.00 R
2081 2229 1.233285 GCCAAGCTGTGTCTGACCAG 61.233 60.000 16.91 16.91 0.00 4.00 R
2365 2531 1.391577 CAATGCCGTGGATGGATTGA 58.608 50.000 0.00 0.00 32.72 2.57 R
2527 2693 1.533625 TCAGATTGGCAAAAGGACCG 58.466 50.000 3.01 0.00 0.00 4.79 R
2856 3027 1.555477 CAAACGACTTGTTGGCAACC 58.445 50.000 26.31 10.73 40.84 3.77 R
2932 3111 1.789054 GCGCGGTAATGCAGTACAAAC 60.789 52.381 24.19 12.34 34.15 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
511 518 7.054124 CCTCTAGGGCATATTTTCAACAGTTA 58.946 38.462 0.00 0.00 0.00 2.24
512 519 7.227512 CCTCTAGGGCATATTTTCAACAGTTAG 59.772 40.741 0.00 0.00 0.00 2.34
513 520 7.054124 TCTAGGGCATATTTTCAACAGTTAGG 58.946 38.462 0.00 0.00 0.00 2.69
514 521 4.956075 AGGGCATATTTTCAACAGTTAGGG 59.044 41.667 0.00 0.00 0.00 3.53
515 522 4.441495 GGGCATATTTTCAACAGTTAGGGC 60.441 45.833 0.00 0.00 0.00 5.19
516 523 4.159506 GGCATATTTTCAACAGTTAGGGCA 59.840 41.667 0.00 0.00 0.00 5.36
517 524 5.163416 GGCATATTTTCAACAGTTAGGGCAT 60.163 40.000 0.00 0.00 0.00 4.40
518 525 5.979517 GCATATTTTCAACAGTTAGGGCATC 59.020 40.000 0.00 0.00 0.00 3.91
520 527 5.904362 ATTTTCAACAGTTAGGGCATCTC 57.096 39.130 0.00 0.00 0.00 2.75
521 528 3.350219 TTCAACAGTTAGGGCATCTCC 57.650 47.619 0.00 0.00 0.00 3.71
524 531 2.749621 CAACAGTTAGGGCATCTCCAAC 59.250 50.000 0.00 0.00 36.21 3.77
525 532 2.269940 ACAGTTAGGGCATCTCCAACT 58.730 47.619 0.00 0.00 36.21 3.16
526 533 2.237392 ACAGTTAGGGCATCTCCAACTC 59.763 50.000 0.00 0.00 36.21 3.01
527 534 1.840635 AGTTAGGGCATCTCCAACTCC 59.159 52.381 0.00 0.00 36.21 3.85
528 535 0.830648 TTAGGGCATCTCCAACTCCG 59.169 55.000 0.00 0.00 36.21 4.63
529 536 0.032515 TAGGGCATCTCCAACTCCGA 60.033 55.000 0.00 0.00 36.21 4.55
530 537 1.153349 GGGCATCTCCAACTCCGAC 60.153 63.158 0.00 0.00 36.21 4.79
531 538 1.153349 GGCATCTCCAACTCCGACC 60.153 63.158 0.00 0.00 34.01 4.79
532 539 1.153349 GCATCTCCAACTCCGACCC 60.153 63.158 0.00 0.00 0.00 4.46
534 541 0.461961 CATCTCCAACTCCGACCCTC 59.538 60.000 0.00 0.00 0.00 4.30
535 542 0.041238 ATCTCCAACTCCGACCCTCA 59.959 55.000 0.00 0.00 0.00 3.86
536 543 0.178944 TCTCCAACTCCGACCCTCAA 60.179 55.000 0.00 0.00 0.00 3.02
538 545 0.395312 TCCAACTCCGACCCTCAAAC 59.605 55.000 0.00 0.00 0.00 2.93
539 546 0.605589 CCAACTCCGACCCTCAAACC 60.606 60.000 0.00 0.00 0.00 3.27
540 547 0.107831 CAACTCCGACCCTCAAACCA 59.892 55.000 0.00 0.00 0.00 3.67
542 549 1.003718 CTCCGACCCTCAAACCACC 60.004 63.158 0.00 0.00 0.00 4.61
545 552 2.833957 GACCCTCAAACCACCCGT 59.166 61.111 0.00 0.00 0.00 5.28
550 557 1.519408 CCTCAAACCACCCGTAACAG 58.481 55.000 0.00 0.00 0.00 3.16
551 558 1.202722 CCTCAAACCACCCGTAACAGT 60.203 52.381 0.00 0.00 0.00 3.55
553 560 1.764134 TCAAACCACCCGTAACAGTCT 59.236 47.619 0.00 0.00 0.00 3.24
554 561 1.871039 CAAACCACCCGTAACAGTCTG 59.129 52.381 0.00 0.00 0.00 3.51
555 562 0.395312 AACCACCCGTAACAGTCTGG 59.605 55.000 4.53 0.00 0.00 3.86
556 563 0.470456 ACCACCCGTAACAGTCTGGA 60.470 55.000 4.53 0.00 0.00 3.86
558 565 1.134788 CCACCCGTAACAGTCTGGATC 60.135 57.143 4.53 0.00 0.00 3.36
559 566 0.815734 ACCCGTAACAGTCTGGATCG 59.184 55.000 4.53 5.46 0.00 3.69
560 567 0.527817 CCCGTAACAGTCTGGATCGC 60.528 60.000 4.53 0.00 0.00 4.58
561 568 0.172578 CCGTAACAGTCTGGATCGCA 59.827 55.000 4.53 0.00 0.00 5.10
563 570 1.854743 CGTAACAGTCTGGATCGCATG 59.145 52.381 4.53 0.00 0.00 4.06
564 571 2.205074 GTAACAGTCTGGATCGCATGG 58.795 52.381 4.53 0.00 0.00 3.66
565 572 0.615331 AACAGTCTGGATCGCATGGT 59.385 50.000 4.53 0.00 0.00 3.55
566 573 0.176680 ACAGTCTGGATCGCATGGTC 59.823 55.000 4.53 0.00 0.00 4.02
567 574 0.531532 CAGTCTGGATCGCATGGTCC 60.532 60.000 0.00 0.00 35.02 4.46
568 575 1.592669 GTCTGGATCGCATGGTCCG 60.593 63.158 0.00 0.00 37.32 4.79
569 576 2.280389 CTGGATCGCATGGTCCGG 60.280 66.667 0.00 0.00 37.32 5.14
570 577 2.762043 TGGATCGCATGGTCCGGA 60.762 61.111 0.00 0.00 37.32 5.14
571 578 2.280186 GGATCGCATGGTCCGGAC 60.280 66.667 27.04 27.04 0.00 4.79
573 580 3.426117 GATCGCATGGTCCGGACGT 62.426 63.158 27.68 16.41 0.00 4.34
574 581 3.716539 ATCGCATGGTCCGGACGTG 62.717 63.158 27.68 26.61 0.00 4.49
579 586 0.237235 CATGGTCCGGACGTGTTTTG 59.763 55.000 27.68 14.08 0.00 2.44
581 588 0.810823 TGGTCCGGACGTGTTTTGTC 60.811 55.000 27.68 11.32 35.60 3.18
582 589 0.810823 GGTCCGGACGTGTTTTGTCA 60.811 55.000 27.68 0.00 38.10 3.58
583 590 1.223187 GTCCGGACGTGTTTTGTCAT 58.777 50.000 20.85 0.00 38.10 3.06
585 592 0.515564 CCGGACGTGTTTTGTCATCC 59.484 55.000 0.00 0.00 38.10 3.51
586 593 1.222300 CGGACGTGTTTTGTCATCCA 58.778 50.000 0.00 0.00 38.10 3.41
587 594 1.600013 CGGACGTGTTTTGTCATCCAA 59.400 47.619 0.00 0.00 38.10 3.53
588 595 2.032302 CGGACGTGTTTTGTCATCCAAA 59.968 45.455 0.00 0.00 41.25 3.28
589 596 3.304391 CGGACGTGTTTTGTCATCCAAAT 60.304 43.478 0.00 0.00 42.45 2.32
590 597 3.980775 GGACGTGTTTTGTCATCCAAATG 59.019 43.478 0.00 0.00 42.45 2.32
591 598 3.380142 ACGTGTTTTGTCATCCAAATGC 58.620 40.909 0.00 0.00 42.45 3.56
592 599 2.404693 CGTGTTTTGTCATCCAAATGCG 59.595 45.455 0.00 0.00 42.45 4.73
593 600 2.155539 GTGTTTTGTCATCCAAATGCGC 59.844 45.455 0.00 0.00 42.45 6.09
594 601 1.386412 GTTTTGTCATCCAAATGCGCG 59.614 47.619 0.00 0.00 42.45 6.86
596 603 0.877743 TTGTCATCCAAATGCGCGAA 59.122 45.000 12.10 0.00 32.58 4.70
597 604 0.877743 TGTCATCCAAATGCGCGAAA 59.122 45.000 12.10 0.00 32.58 3.46
642 649 6.931243 TTTTAATCCCGCGTATTGTTTTTC 57.069 33.333 4.92 0.00 0.00 2.29
643 650 5.624344 TTAATCCCGCGTATTGTTTTTCA 57.376 34.783 4.92 0.00 0.00 2.69
644 651 4.506886 AATCCCGCGTATTGTTTTTCAA 57.493 36.364 4.92 0.00 40.53 2.69
646 653 3.630101 TCCCGCGTATTGTTTTTCAAAC 58.370 40.909 4.92 0.00 39.62 2.93
647 654 3.315749 TCCCGCGTATTGTTTTTCAAACT 59.684 39.130 4.92 0.00 39.62 2.66
648 655 3.666797 CCCGCGTATTGTTTTTCAAACTC 59.333 43.478 4.92 0.00 39.62 3.01
650 657 4.915085 CCGCGTATTGTTTTTCAAACTCAT 59.085 37.500 4.92 0.00 39.62 2.90
652 659 5.623264 CGCGTATTGTTTTTCAAACTCATGA 59.377 36.000 0.00 0.00 39.62 3.07
653 660 6.141527 CGCGTATTGTTTTTCAAACTCATGAA 59.858 34.615 0.00 0.00 39.62 2.57
655 662 7.167468 GCGTATTGTTTTTCAAACTCATGAACT 59.833 33.333 0.00 0.00 38.95 3.01
656 663 9.019764 CGTATTGTTTTTCAAACTCATGAACTT 57.980 29.630 0.00 0.00 38.95 2.66
688 695 8.782533 GTTCGTGAACTATTTTTCAAATCTGT 57.217 30.769 5.51 0.00 37.24 3.41
689 696 8.682016 GTTCGTGAACTATTTTTCAAATCTGTG 58.318 33.333 5.51 0.00 37.24 3.66
690 697 7.359595 TCGTGAACTATTTTTCAAATCTGTGG 58.640 34.615 0.00 0.00 37.24 4.17
691 698 7.227711 TCGTGAACTATTTTTCAAATCTGTGGA 59.772 33.333 0.00 0.00 37.24 4.02
692 699 7.860373 CGTGAACTATTTTTCAAATCTGTGGAA 59.140 33.333 0.00 0.00 37.24 3.53
693 700 8.968242 GTGAACTATTTTTCAAATCTGTGGAAC 58.032 33.333 0.00 0.00 37.24 3.62
694 701 8.690884 TGAACTATTTTTCAAATCTGTGGAACA 58.309 29.630 0.00 0.00 37.20 3.18
707 714 2.461897 TGGAACACGCGAACTTTTTC 57.538 45.000 15.93 5.38 0.00 2.29
709 716 2.031191 TGGAACACGCGAACTTTTTCTC 59.969 45.455 15.93 0.00 0.00 2.87
710 717 2.031191 GGAACACGCGAACTTTTTCTCA 59.969 45.455 15.93 0.00 0.00 3.27
711 718 3.486209 GGAACACGCGAACTTTTTCTCAA 60.486 43.478 15.93 0.00 0.00 3.02
713 720 4.287238 ACACGCGAACTTTTTCTCAAAT 57.713 36.364 15.93 0.00 0.00 2.32
717 724 5.399301 CACGCGAACTTTTTCTCAAATTCAT 59.601 36.000 15.93 0.00 0.00 2.57
718 725 5.399301 ACGCGAACTTTTTCTCAAATTCATG 59.601 36.000 15.93 0.00 0.00 3.07
719 726 5.624900 CGCGAACTTTTTCTCAAATTCATGA 59.375 36.000 0.00 0.00 0.00 3.07
720 727 6.142161 CGCGAACTTTTTCTCAAATTCATGAA 59.858 34.615 11.26 11.26 0.00 2.57
811 818 4.811555 TGTTTTGAGAATCTGGTCAACG 57.188 40.909 0.00 0.00 32.40 4.10
812 819 3.563808 TGTTTTGAGAATCTGGTCAACGG 59.436 43.478 0.00 0.00 32.40 4.44
813 820 3.485463 TTTGAGAATCTGGTCAACGGT 57.515 42.857 0.00 0.00 32.40 4.83
814 821 3.485463 TTGAGAATCTGGTCAACGGTT 57.515 42.857 0.00 0.00 34.92 4.44
816 823 4.188247 TGAGAATCTGGTCAACGGTTAG 57.812 45.455 0.00 0.00 34.92 2.34
818 825 4.039973 TGAGAATCTGGTCAACGGTTAGTT 59.960 41.667 0.00 0.00 39.06 2.24
819 826 4.969484 AGAATCTGGTCAACGGTTAGTTT 58.031 39.130 0.00 0.00 42.02 2.66
820 827 5.374071 AGAATCTGGTCAACGGTTAGTTTT 58.626 37.500 0.00 0.00 42.02 2.43
821 828 5.826208 AGAATCTGGTCAACGGTTAGTTTTT 59.174 36.000 0.00 0.00 42.02 1.94
850 857 4.365899 TTTGATAAGTTAGCGAGCGAGA 57.634 40.909 0.00 0.00 0.00 4.04
854 861 0.736053 AAGTTAGCGAGCGAGAGAGG 59.264 55.000 0.00 0.00 0.00 3.69
868 875 0.173708 GAGAGGGAGCGTACCTGTTG 59.826 60.000 1.50 0.00 38.79 3.33
894 901 2.202756 GCCCAGGTCGCGAAGTAG 60.203 66.667 12.06 0.59 0.00 2.57
895 902 2.202756 CCCAGGTCGCGAAGTAGC 60.203 66.667 12.06 0.00 0.00 3.58
919 929 2.185608 GACGCTGAAGAGGGGCTC 59.814 66.667 0.00 0.00 37.20 4.70
948 958 4.299796 GGCCCAACTGCTTCCCCA 62.300 66.667 0.00 0.00 0.00 4.96
950 960 2.672996 CCCAACTGCTTCCCCACG 60.673 66.667 0.00 0.00 0.00 4.94
951 961 2.429930 CCAACTGCTTCCCCACGA 59.570 61.111 0.00 0.00 0.00 4.35
956 966 1.738099 CTGCTTCCCCACGACTTCG 60.738 63.158 0.00 0.00 46.33 3.79
975 1006 2.382770 TTCATCCCCACCATCCCGG 61.383 63.158 0.00 0.00 42.50 5.73
1131 1169 3.962694 TCAGCCTGCCTGCTTGCT 61.963 61.111 0.00 1.05 40.32 3.91
1177 1216 0.174617 CTGACCGAGCTTCCTTCCTC 59.825 60.000 0.00 0.00 0.00 3.71
1189 1228 1.592223 CTTCCTCGGGTGTCTGTCC 59.408 63.158 0.00 0.00 0.00 4.02
1194 1233 0.249741 CTCGGGTGTCTGTCCGTTTT 60.250 55.000 0.00 0.00 45.79 2.43
1195 1234 1.000060 CTCGGGTGTCTGTCCGTTTTA 60.000 52.381 0.00 0.00 45.79 1.52
1232 1276 6.174049 GGATTTTCCTAGCACTTTGTAGACT 58.826 40.000 0.00 0.00 32.53 3.24
1263 1307 1.289160 TGTGGCCTCCTTAGATTGCT 58.711 50.000 3.32 0.00 0.00 3.91
1267 1320 2.308570 TGGCCTCCTTAGATTGCTTCAA 59.691 45.455 3.32 0.00 0.00 2.69
1271 1324 3.626670 CCTCCTTAGATTGCTTCAAGCTG 59.373 47.826 11.57 0.00 40.42 4.24
1272 1325 4.511527 CTCCTTAGATTGCTTCAAGCTGA 58.488 43.478 11.57 0.00 40.42 4.26
1273 1326 5.108187 TCCTTAGATTGCTTCAAGCTGAT 57.892 39.130 11.57 4.71 40.42 2.90
1274 1327 5.121811 TCCTTAGATTGCTTCAAGCTGATC 58.878 41.667 11.57 13.57 40.42 2.92
1275 1328 4.025061 CCTTAGATTGCTTCAAGCTGATCG 60.025 45.833 11.57 2.64 40.42 3.69
1276 1329 2.983229 AGATTGCTTCAAGCTGATCGT 58.017 42.857 11.57 2.59 38.71 3.73
1277 1330 2.676839 AGATTGCTTCAAGCTGATCGTG 59.323 45.455 11.57 0.00 38.71 4.35
1278 1331 0.518636 TTGCTTCAAGCTGATCGTGC 59.481 50.000 11.57 2.71 42.97 5.34
1279 1332 0.603439 TGCTTCAAGCTGATCGTGCA 60.603 50.000 11.57 0.00 42.97 4.57
1291 1344 2.938451 TGATCGTGCAACTCATCAATCC 59.062 45.455 0.00 0.00 32.74 3.01
1306 1359 2.568509 TCAATCCTCAGCATCACAGTGA 59.431 45.455 5.50 5.50 0.00 3.41
1350 1407 9.678260 ATGAACTATATTCTTTGAGAGTTGCTT 57.322 29.630 0.00 0.00 0.00 3.91
1351 1408 9.155975 TGAACTATATTCTTTGAGAGTTGCTTC 57.844 33.333 0.00 0.00 0.00 3.86
1359 1416 2.889512 TGAGAGTTGCTTCCAGGACTA 58.110 47.619 0.00 0.00 0.00 2.59
1360 1417 2.828520 TGAGAGTTGCTTCCAGGACTAG 59.171 50.000 0.00 0.00 0.00 2.57
1380 1437 1.202533 GCTAGCCACTTGGATAAGCGA 60.203 52.381 2.29 0.00 35.40 4.93
1406 1463 7.347222 AGGTGGATAAATACCAAGTGTATCTCA 59.653 37.037 0.00 0.00 39.28 3.27
1416 1473 7.914427 ACCAAGTGTATCTCATCCTATTACA 57.086 36.000 0.00 0.00 0.00 2.41
1427 1484 5.461526 TCATCCTATTACAATCTTCTCGCG 58.538 41.667 0.00 0.00 0.00 5.87
1444 1549 5.525199 TCTCGCGCAATGTTAGTTATGATA 58.475 37.500 8.75 0.00 0.00 2.15
1470 1575 3.873952 GGAAATGGCTAGTTCTAGTGCAG 59.126 47.826 10.13 0.00 31.84 4.41
1493 1598 1.455587 CCACTGGCTTTGGGTGTGT 60.456 57.895 0.00 0.00 0.00 3.72
1494 1599 0.179004 CCACTGGCTTTGGGTGTGTA 60.179 55.000 0.00 0.00 0.00 2.90
1495 1600 1.686355 CACTGGCTTTGGGTGTGTAA 58.314 50.000 0.00 0.00 0.00 2.41
1497 1602 1.493022 ACTGGCTTTGGGTGTGTAAGA 59.507 47.619 0.00 0.00 0.00 2.10
1506 1611 1.470098 GGGTGTGTAAGATGCTTGCTG 59.530 52.381 0.00 0.00 0.00 4.41
1514 1619 3.696782 GATGCTTGCTGCTTCTGTG 57.303 52.632 0.00 0.00 41.11 3.66
1515 1620 0.456312 GATGCTTGCTGCTTCTGTGC 60.456 55.000 0.00 0.00 41.11 4.57
1516 1621 1.874345 ATGCTTGCTGCTTCTGTGCC 61.874 55.000 0.00 0.00 43.37 5.01
1517 1622 2.960170 CTTGCTGCTTCTGTGCCC 59.040 61.111 0.00 0.00 0.00 5.36
1518 1623 1.900016 CTTGCTGCTTCTGTGCCCA 60.900 57.895 0.00 0.00 0.00 5.36
1592 1719 6.342111 TGCATAATTAGTGTTCGTGTGGATA 58.658 36.000 0.00 0.00 0.00 2.59
1616 1743 2.026262 TGCTTCTGAACTATGAACCCCC 60.026 50.000 0.00 0.00 0.00 5.40
1617 1744 2.239907 GCTTCTGAACTATGAACCCCCT 59.760 50.000 0.00 0.00 0.00 4.79
1620 1747 2.838202 TCTGAACTATGAACCCCCTGTC 59.162 50.000 0.00 0.00 0.00 3.51
1628 1755 1.911702 GAACCCCCTGTCCCTAGCAC 61.912 65.000 0.00 0.00 0.00 4.40
1638 1765 1.135170 GTCCCTAGCACGTTACCTGAC 60.135 57.143 0.00 0.00 0.00 3.51
1671 1811 6.740411 TTTTCTTTTCTTTTTGCACAGCAT 57.260 29.167 0.00 0.00 38.76 3.79
1696 1836 6.339730 TGTAAATGCCATGCTTTTAATCCTG 58.660 36.000 8.23 0.00 38.94 3.86
1702 1842 5.105023 TGCCATGCTTTTAATCCTGCAAATA 60.105 36.000 0.00 0.00 38.96 1.40
1709 1850 8.235905 TGCTTTTAATCCTGCAAATAAAAATGC 58.764 29.630 11.32 11.32 42.86 3.56
1722 1863 0.336392 AAAATGCCCCTTCCCCTCTC 59.664 55.000 0.00 0.00 0.00 3.20
1723 1864 1.584717 AAATGCCCCTTCCCCTCTCC 61.585 60.000 0.00 0.00 0.00 3.71
1728 1869 3.148279 CCTTCCCCTCTCCCGACG 61.148 72.222 0.00 0.00 0.00 5.12
1742 1883 1.088340 CCGACGTCTCGCTTCCTCTA 61.088 60.000 14.70 0.00 38.70 2.43
1798 1939 1.882623 CTCCTGGTTTCACAAAGAGCC 59.117 52.381 0.00 0.00 0.00 4.70
1807 1948 2.912771 TCACAAAGAGCCGAGACAAAA 58.087 42.857 0.00 0.00 0.00 2.44
1813 1954 0.793250 GAGCCGAGACAAAACAGAGC 59.207 55.000 0.00 0.00 0.00 4.09
1820 1961 3.309682 CGAGACAAAACAGAGCAAACAGA 59.690 43.478 0.00 0.00 0.00 3.41
1821 1962 4.551603 CGAGACAAAACAGAGCAAACAGAG 60.552 45.833 0.00 0.00 0.00 3.35
1822 1963 4.265073 AGACAAAACAGAGCAAACAGAGT 58.735 39.130 0.00 0.00 0.00 3.24
1862 2007 1.133823 TGTCACAAGTCACATGCCCTT 60.134 47.619 0.00 0.00 0.00 3.95
1863 2008 1.956477 GTCACAAGTCACATGCCCTTT 59.044 47.619 0.00 0.00 0.00 3.11
1877 2025 7.121168 TCACATGCCCTTTCTTTCATTACTTAG 59.879 37.037 0.00 0.00 0.00 2.18
1880 2028 5.772672 TGCCCTTTCTTTCATTACTTAGCAA 59.227 36.000 0.00 0.00 0.00 3.91
1921 2069 3.563390 GGATGCTTCTCTAATCAGCAACC 59.437 47.826 4.20 4.20 46.35 3.77
1993 2141 2.336945 TGCTAGGATGCAACAGATGG 57.663 50.000 0.00 0.00 40.29 3.51
1998 2146 4.020751 GCTAGGATGCAACAGATGGATAGA 60.021 45.833 0.00 0.00 40.61 1.98
2019 2167 3.959495 ATTACAAGATGGGACTGCCAT 57.041 42.857 0.81 0.81 35.15 4.40
2080 2228 2.945008 CCTCAGCAAGTTCACTGTCAAA 59.055 45.455 3.07 0.00 35.37 2.69
2081 2229 3.242870 CCTCAGCAAGTTCACTGTCAAAC 60.243 47.826 3.07 0.00 35.37 2.93
2177 2334 4.925646 GCTTTTCTTTCTATGCACTTTGGG 59.074 41.667 0.00 0.00 0.00 4.12
2178 2335 5.509670 GCTTTTCTTTCTATGCACTTTGGGT 60.510 40.000 0.00 0.00 0.00 4.51
2205 2362 4.400529 AAACCAATTTGCCTCTTTCGTT 57.599 36.364 0.00 0.00 0.00 3.85
2365 2531 0.542232 AGAGGGTGGAGTACGCACTT 60.542 55.000 0.00 0.00 45.13 3.16
2377 2543 1.453155 ACGCACTTCAATCCATCCAC 58.547 50.000 0.00 0.00 0.00 4.02
2527 2693 4.967442 ACAGACCTAGTAAGTAATTCCCCC 59.033 45.833 0.00 0.00 0.00 5.40
2570 2737 0.461163 TCCCGTGCATGTCGTTATGG 60.461 55.000 4.96 0.00 0.00 2.74
2666 2833 9.436957 CTAGGTGTATCTGTCATTTTAGTTTGT 57.563 33.333 0.00 0.00 0.00 2.83
2856 3027 0.605083 GCAAGGAAAAGAGGGCTTGG 59.395 55.000 0.00 0.00 33.79 3.61
2874 3045 0.458260 GGGTTGCCAACAAGTCGTTT 59.542 50.000 10.18 0.00 36.16 3.60
3037 3243 4.909880 GGACTTTCCGAACTTTCAAATTCG 59.090 41.667 0.00 0.00 45.68 3.34
3112 3318 9.703892 ATCTACAATGATTCTGTAGCATAGTTC 57.296 33.333 7.78 0.00 43.94 3.01
3174 3403 5.522456 TGCATGTTCTTTTTAGTGCTGAAG 58.478 37.500 0.00 0.00 33.95 3.02
3233 3464 1.553248 TGTTAATCGGTGCCACTAGCT 59.447 47.619 0.00 0.00 44.23 3.32
3281 3517 5.280654 AGGACGGTTCAACTTAGTGTTTA 57.719 39.130 0.00 0.00 36.63 2.01
3332 3568 4.006319 GGGCATAGATAGAAATGAGGCAC 58.994 47.826 0.00 0.00 0.00 5.01
3372 3611 8.463055 TGATATAAGATTGTTTATAGGGCCCT 57.537 34.615 31.35 31.35 31.13 5.19
3373 3612 8.328758 TGATATAAGATTGTTTATAGGGCCCTG 58.671 37.037 35.81 0.00 31.13 4.45
3374 3613 6.780198 ATAAGATTGTTTATAGGGCCCTGA 57.220 37.500 35.81 19.71 0.00 3.86
3375 3614 5.466127 AAGATTGTTTATAGGGCCCTGAA 57.534 39.130 35.81 24.48 0.00 3.02
3377 3616 5.635120 AGATTGTTTATAGGGCCCTGAATC 58.365 41.667 35.81 25.71 0.00 2.52
3379 3618 5.466127 TTGTTTATAGGGCCCTGAATCTT 57.534 39.130 35.81 8.91 0.00 2.40
3380 3619 5.048846 TGTTTATAGGGCCCTGAATCTTC 57.951 43.478 35.81 17.64 0.00 2.87
3381 3620 4.476846 TGTTTATAGGGCCCTGAATCTTCA 59.523 41.667 35.81 19.90 35.57 3.02
3393 3632 4.543590 TGAATCTTCAGAGGTTGTCTCC 57.456 45.455 0.00 0.00 43.44 3.71
3395 3634 1.257743 TCTTCAGAGGTTGTCTCCCG 58.742 55.000 0.00 0.00 43.44 5.14
3396 3635 0.390472 CTTCAGAGGTTGTCTCCCGC 60.390 60.000 0.00 0.00 43.44 6.13
3397 3636 1.827399 TTCAGAGGTTGTCTCCCGCC 61.827 60.000 0.00 0.00 43.44 6.13
3398 3637 2.203788 AGAGGTTGTCTCCCGCCA 60.204 61.111 0.00 0.00 43.44 5.69
3399 3638 1.841556 AGAGGTTGTCTCCCGCCAA 60.842 57.895 0.00 0.00 43.44 4.52
3400 3639 1.201429 AGAGGTTGTCTCCCGCCAAT 61.201 55.000 0.00 0.00 43.44 3.16
3403 3642 0.966179 GGTTGTCTCCCGCCAATTTT 59.034 50.000 0.00 0.00 0.00 1.82
3404 3643 2.164338 GGTTGTCTCCCGCCAATTTTA 58.836 47.619 0.00 0.00 0.00 1.52
3406 3645 1.444836 TGTCTCCCGCCAATTTTACG 58.555 50.000 0.00 0.00 0.00 3.18
3407 3646 0.730840 GTCTCCCGCCAATTTTACGG 59.269 55.000 4.02 4.02 46.50 4.02
3412 3651 0.454196 CCGCCAATTTTACGGGAAGG 59.546 55.000 3.20 0.00 43.23 3.46
3413 3652 0.454196 CGCCAATTTTACGGGAAGGG 59.546 55.000 0.00 0.00 0.00 3.95
3415 3654 1.475280 GCCAATTTTACGGGAAGGGAC 59.525 52.381 0.00 0.00 0.00 4.46
3430 3669 3.786213 AGGGACTTCCTTCTGGTAGAT 57.214 47.619 0.00 0.00 45.47 1.98
3431 3670 3.379452 AGGGACTTCCTTCTGGTAGATG 58.621 50.000 0.00 0.00 45.47 2.90
3432 3671 2.436173 GGGACTTCCTTCTGGTAGATGG 59.564 54.545 4.79 4.79 40.00 3.51
3441 3680 5.428184 CTTCTGGTAGATGGAAGGAAAGT 57.572 43.478 0.00 0.00 34.55 2.66
3443 3682 5.843019 TCTGGTAGATGGAAGGAAAGTTT 57.157 39.130 0.00 0.00 0.00 2.66
3444 3683 5.560724 TCTGGTAGATGGAAGGAAAGTTTG 58.439 41.667 0.00 0.00 0.00 2.93
3445 3684 4.662278 TGGTAGATGGAAGGAAAGTTTGG 58.338 43.478 0.00 0.00 0.00 3.28
3446 3685 4.017126 GGTAGATGGAAGGAAAGTTTGGG 58.983 47.826 0.00 0.00 0.00 4.12
3447 3686 4.263771 GGTAGATGGAAGGAAAGTTTGGGA 60.264 45.833 0.00 0.00 0.00 4.37
3448 3687 4.039603 AGATGGAAGGAAAGTTTGGGAG 57.960 45.455 0.00 0.00 0.00 4.30
3450 3689 3.963476 TGGAAGGAAAGTTTGGGAGAA 57.037 42.857 0.00 0.00 0.00 2.87
3451 3690 4.469469 TGGAAGGAAAGTTTGGGAGAAT 57.531 40.909 0.00 0.00 0.00 2.40
3452 3691 4.814967 TGGAAGGAAAGTTTGGGAGAATT 58.185 39.130 0.00 0.00 0.00 2.17
3454 3693 6.377912 TGGAAGGAAAGTTTGGGAGAATTTA 58.622 36.000 0.00 0.00 0.00 1.40
3456 3695 6.266786 GGAAGGAAAGTTTGGGAGAATTTACA 59.733 38.462 0.00 0.00 0.00 2.41
3457 3696 6.901081 AGGAAAGTTTGGGAGAATTTACAG 57.099 37.500 0.00 0.00 0.00 2.74
3458 3697 5.775195 AGGAAAGTTTGGGAGAATTTACAGG 59.225 40.000 0.00 0.00 0.00 4.00
3459 3698 5.773176 GGAAAGTTTGGGAGAATTTACAGGA 59.227 40.000 0.00 0.00 0.00 3.86
3460 3699 6.437477 GGAAAGTTTGGGAGAATTTACAGGAT 59.563 38.462 0.00 0.00 0.00 3.24
3461 3700 7.363007 GGAAAGTTTGGGAGAATTTACAGGATC 60.363 40.741 0.00 0.00 0.00 3.36
3462 3701 5.510430 AGTTTGGGAGAATTTACAGGATCC 58.490 41.667 2.48 2.48 0.00 3.36
3466 3705 5.843019 GGGAGAATTTACAGGATCCCATA 57.157 43.478 8.55 0.00 44.85 2.74
3467 3706 6.200878 GGGAGAATTTACAGGATCCCATAA 57.799 41.667 8.55 4.59 44.85 1.90
3468 3707 6.610830 GGGAGAATTTACAGGATCCCATAAA 58.389 40.000 16.52 16.52 44.85 1.40
3469 3708 7.066781 GGGAGAATTTACAGGATCCCATAAAA 58.933 38.462 17.61 10.54 44.85 1.52
3492 3731 4.996062 AATTGTACGTTTACCGGAACTG 57.004 40.909 9.46 2.44 42.24 3.16
3493 3732 3.724508 TTGTACGTTTACCGGAACTGA 57.275 42.857 9.46 0.00 42.24 3.41
3494 3733 3.287312 TGTACGTTTACCGGAACTGAG 57.713 47.619 9.46 0.00 42.24 3.35
3495 3734 2.622942 TGTACGTTTACCGGAACTGAGT 59.377 45.455 9.46 3.29 42.24 3.41
3496 3735 2.896745 ACGTTTACCGGAACTGAGTT 57.103 45.000 9.46 0.00 42.24 3.01
3497 3736 3.183793 ACGTTTACCGGAACTGAGTTT 57.816 42.857 9.46 0.00 42.24 2.66
3498 3737 3.534554 ACGTTTACCGGAACTGAGTTTT 58.465 40.909 9.46 0.00 42.24 2.43
3499 3738 3.940852 ACGTTTACCGGAACTGAGTTTTT 59.059 39.130 9.46 0.00 42.24 1.94
3519 3758 5.340439 TTTTTGGCCTAACTTTTCCGAAA 57.660 34.783 3.32 0.00 31.90 3.46
3520 3759 3.994204 TTGGCCTAACTTTTCCGAAAC 57.006 42.857 3.32 0.00 0.00 2.78
3521 3760 2.232399 TGGCCTAACTTTTCCGAAACC 58.768 47.619 3.32 0.00 0.00 3.27
3522 3761 2.232399 GGCCTAACTTTTCCGAAACCA 58.768 47.619 0.00 0.00 0.00 3.67
3523 3762 2.823747 GGCCTAACTTTTCCGAAACCAT 59.176 45.455 0.00 0.00 0.00 3.55
3525 3764 4.460034 GGCCTAACTTTTCCGAAACCATTA 59.540 41.667 0.00 0.00 0.00 1.90
3526 3765 5.126545 GGCCTAACTTTTCCGAAACCATTAT 59.873 40.000 0.00 0.00 0.00 1.28
3529 3768 6.376018 CCTAACTTTTCCGAAACCATTATGGA 59.624 38.462 19.23 0.00 40.96 3.41
3530 3769 6.850752 AACTTTTCCGAAACCATTATGGAT 57.149 33.333 19.23 2.57 40.96 3.41
3531 3770 7.948034 AACTTTTCCGAAACCATTATGGATA 57.052 32.000 19.23 0.00 40.96 2.59
3532 3771 7.329588 ACTTTTCCGAAACCATTATGGATAC 57.670 36.000 19.23 7.17 40.96 2.24
3534 3773 3.997762 TCCGAAACCATTATGGATACCG 58.002 45.455 19.23 12.67 40.96 4.02
3536 3775 3.244284 CCGAAACCATTATGGATACCGGA 60.244 47.826 19.23 0.00 40.96 5.14
3540 3779 6.567701 CGAAACCATTATGGATACCGGAATTG 60.568 42.308 19.23 0.00 40.96 2.32
3544 3783 5.048083 CCATTATGGATACCGGAATTGTTGG 60.048 44.000 9.46 0.00 40.96 3.77
3546 3785 3.275617 TGGATACCGGAATTGTTGGAG 57.724 47.619 9.46 0.00 0.00 3.86
3547 3786 2.841266 TGGATACCGGAATTGTTGGAGA 59.159 45.455 9.46 0.00 0.00 3.71
3549 3788 3.815401 GGATACCGGAATTGTTGGAGATG 59.185 47.826 9.46 0.00 0.00 2.90
3550 3789 2.879103 ACCGGAATTGTTGGAGATGT 57.121 45.000 9.46 0.00 0.00 3.06
3551 3790 3.154827 ACCGGAATTGTTGGAGATGTT 57.845 42.857 9.46 0.00 0.00 2.71
3554 3793 3.696051 CCGGAATTGTTGGAGATGTTCAT 59.304 43.478 0.00 0.00 0.00 2.57
3555 3794 4.158394 CCGGAATTGTTGGAGATGTTCATT 59.842 41.667 0.00 0.00 0.00 2.57
3556 3795 5.097529 CGGAATTGTTGGAGATGTTCATTG 58.902 41.667 0.00 0.00 0.00 2.82
3559 3798 2.170166 TGTTGGAGATGTTCATTGGGC 58.830 47.619 0.00 0.00 0.00 5.36
3560 3799 2.225091 TGTTGGAGATGTTCATTGGGCT 60.225 45.455 0.00 0.00 0.00 5.19
3561 3800 2.827921 GTTGGAGATGTTCATTGGGCTT 59.172 45.455 0.00 0.00 0.00 4.35
3562 3801 3.173953 TGGAGATGTTCATTGGGCTTT 57.826 42.857 0.00 0.00 0.00 3.51
3563 3802 3.091545 TGGAGATGTTCATTGGGCTTTC 58.908 45.455 0.00 0.00 0.00 2.62
3564 3803 3.245371 TGGAGATGTTCATTGGGCTTTCT 60.245 43.478 0.00 0.00 0.00 2.52
3566 3805 4.221482 GGAGATGTTCATTGGGCTTTCTTT 59.779 41.667 0.00 0.00 0.00 2.52
3567 3806 5.279657 GGAGATGTTCATTGGGCTTTCTTTT 60.280 40.000 0.00 0.00 0.00 2.27
3568 3807 6.178607 AGATGTTCATTGGGCTTTCTTTTT 57.821 33.333 0.00 0.00 0.00 1.94
3585 3824 3.390175 TTTTTGTCAAGAGGGGGTCAA 57.610 42.857 0.00 0.00 0.00 3.18
3586 3825 3.611025 TTTTGTCAAGAGGGGGTCAAT 57.389 42.857 0.00 0.00 0.00 2.57
3587 3826 4.733077 TTTTGTCAAGAGGGGGTCAATA 57.267 40.909 0.00 0.00 0.00 1.90
3588 3827 4.301072 TTTGTCAAGAGGGGGTCAATAG 57.699 45.455 0.00 0.00 0.00 1.73
3589 3828 2.196595 TGTCAAGAGGGGGTCAATAGG 58.803 52.381 0.00 0.00 0.00 2.57
3590 3829 2.197465 GTCAAGAGGGGGTCAATAGGT 58.803 52.381 0.00 0.00 0.00 3.08
3591 3830 2.170817 GTCAAGAGGGGGTCAATAGGTC 59.829 54.545 0.00 0.00 0.00 3.85
3592 3831 2.196595 CAAGAGGGGGTCAATAGGTCA 58.803 52.381 0.00 0.00 0.00 4.02
3593 3832 2.576191 CAAGAGGGGGTCAATAGGTCAA 59.424 50.000 0.00 0.00 0.00 3.18
3594 3833 3.151542 AGAGGGGGTCAATAGGTCAAT 57.848 47.619 0.00 0.00 0.00 2.57
3595 3834 4.295905 AGAGGGGGTCAATAGGTCAATA 57.704 45.455 0.00 0.00 0.00 1.90
3596 3835 4.641868 AGAGGGGGTCAATAGGTCAATAA 58.358 43.478 0.00 0.00 0.00 1.40
3597 3836 5.235534 AGAGGGGGTCAATAGGTCAATAAT 58.764 41.667 0.00 0.00 0.00 1.28
3598 3837 5.310857 AGAGGGGGTCAATAGGTCAATAATC 59.689 44.000 0.00 0.00 0.00 1.75
3599 3838 5.235534 AGGGGGTCAATAGGTCAATAATCT 58.764 41.667 0.00 0.00 0.00 2.40
3600 3839 5.310857 AGGGGGTCAATAGGTCAATAATCTC 59.689 44.000 0.00 0.00 0.00 2.75
3601 3840 5.310857 GGGGGTCAATAGGTCAATAATCTCT 59.689 44.000 0.00 0.00 0.00 3.10
3611 4262 7.150783 AGGTCAATAATCTCTTGTTTTGAGC 57.849 36.000 0.00 0.00 40.19 4.26
3617 4268 9.199982 CAATAATCTCTTGTTTTGAGCATTTGT 57.800 29.630 0.00 0.00 0.00 2.83
3620 4271 6.455360 TCTCTTGTTTTGAGCATTTGTTCT 57.545 33.333 0.00 0.00 0.00 3.01
3621 4272 7.566760 TCTCTTGTTTTGAGCATTTGTTCTA 57.433 32.000 0.00 0.00 0.00 2.10
3626 4277 5.978919 TGTTTTGAGCATTTGTTCTAAGCTG 59.021 36.000 0.00 0.00 35.36 4.24
3628 4279 2.489329 TGAGCATTTGTTCTAAGCTGCC 59.511 45.455 0.00 0.00 35.36 4.85
3629 4280 2.489329 GAGCATTTGTTCTAAGCTGCCA 59.511 45.455 0.00 0.00 35.36 4.92
3630 4281 2.892852 AGCATTTGTTCTAAGCTGCCAA 59.107 40.909 0.00 0.00 33.67 4.52
3631 4282 2.989166 GCATTTGTTCTAAGCTGCCAAC 59.011 45.455 0.00 0.00 0.00 3.77
3632 4283 3.236816 CATTTGTTCTAAGCTGCCAACG 58.763 45.455 0.00 0.00 0.00 4.10
3633 4284 2.248280 TTGTTCTAAGCTGCCAACGA 57.752 45.000 0.00 0.00 0.00 3.85
3634 4285 1.795768 TGTTCTAAGCTGCCAACGAG 58.204 50.000 0.00 0.00 0.00 4.18
3635 4286 0.444260 GTTCTAAGCTGCCAACGAGC 59.556 55.000 0.00 0.00 36.65 5.03
3637 4288 1.375908 CTAAGCTGCCAACGAGCCA 60.376 57.895 0.00 0.00 37.12 4.75
3638 4289 0.955428 CTAAGCTGCCAACGAGCCAA 60.955 55.000 0.00 0.00 37.12 4.52
3639 4290 1.234615 TAAGCTGCCAACGAGCCAAC 61.235 55.000 0.00 0.00 37.12 3.77
3640 4291 2.965716 AAGCTGCCAACGAGCCAACT 62.966 55.000 0.00 0.00 37.12 3.16
3641 4292 2.949106 CTGCCAACGAGCCAACTG 59.051 61.111 0.00 0.00 0.00 3.16
3642 4293 3.259425 CTGCCAACGAGCCAACTGC 62.259 63.158 0.00 0.00 41.71 4.40
3699 4350 9.591792 CTCATGAAACATAGAGATCAAGTAACA 57.408 33.333 0.00 0.00 0.00 2.41
3703 4354 8.708742 TGAAACATAGAGATCAAGTAACAAACG 58.291 33.333 0.00 0.00 0.00 3.60
3707 4358 3.071479 GAGATCAAGTAACAAACGCCCA 58.929 45.455 0.00 0.00 0.00 5.36
3711 4362 2.875933 TCAAGTAACAAACGCCCAAGAG 59.124 45.455 0.00 0.00 0.00 2.85
3716 4367 2.270352 ACAAACGCCCAAGAGATGAA 57.730 45.000 0.00 0.00 0.00 2.57
3721 4372 4.487714 AACGCCCAAGAGATGAAGATAA 57.512 40.909 0.00 0.00 0.00 1.75
3780 4433 8.537016 TGTACCTAAACATACATTTACTGCTCT 58.463 33.333 0.00 0.00 0.00 4.09
3781 4434 7.849804 ACCTAAACATACATTTACTGCTCTG 57.150 36.000 0.00 0.00 0.00 3.35
3863 4520 8.500753 TGTACTTGTTTTCTCTCTAAAAGCAA 57.499 30.769 0.00 0.00 35.39 3.91
3879 4538 3.202829 AGCAACCAAGGACGTCTTTAA 57.797 42.857 16.46 0.00 32.41 1.52
3886 4545 4.131596 CCAAGGACGTCTTTAAAGGACAA 58.868 43.478 16.46 0.00 32.41 3.18
3887 4546 4.760204 CCAAGGACGTCTTTAAAGGACAAT 59.240 41.667 16.46 3.98 32.41 2.71
3888 4547 5.334879 CCAAGGACGTCTTTAAAGGACAATG 60.335 44.000 16.46 4.12 32.41 2.82
3890 4549 4.041198 AGGACGTCTTTAAAGGACAATGGA 59.959 41.667 16.46 0.00 33.73 3.41
3892 4551 5.334646 GGACGTCTTTAAAGGACAATGGAAC 60.335 44.000 16.46 2.11 33.73 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
502 509 2.265367 TGGAGATGCCCTAACTGTTGA 58.735 47.619 2.69 0.00 34.97 3.18
511 518 1.306141 TCGGAGTTGGAGATGCCCT 60.306 57.895 0.00 0.00 34.97 5.19
512 519 1.153349 GTCGGAGTTGGAGATGCCC 60.153 63.158 0.00 0.00 34.97 5.36
513 520 1.153349 GGTCGGAGTTGGAGATGCC 60.153 63.158 0.00 0.00 37.10 4.40
514 521 1.153349 GGGTCGGAGTTGGAGATGC 60.153 63.158 0.00 0.00 0.00 3.91
515 522 0.461961 GAGGGTCGGAGTTGGAGATG 59.538 60.000 0.00 0.00 0.00 2.90
516 523 0.041238 TGAGGGTCGGAGTTGGAGAT 59.959 55.000 0.00 0.00 0.00 2.75
517 524 0.178944 TTGAGGGTCGGAGTTGGAGA 60.179 55.000 0.00 0.00 0.00 3.71
518 525 0.685097 TTTGAGGGTCGGAGTTGGAG 59.315 55.000 0.00 0.00 0.00 3.86
520 527 0.605589 GGTTTGAGGGTCGGAGTTGG 60.606 60.000 0.00 0.00 0.00 3.77
521 528 0.107831 TGGTTTGAGGGTCGGAGTTG 59.892 55.000 0.00 0.00 0.00 3.16
524 531 1.003718 GGTGGTTTGAGGGTCGGAG 60.004 63.158 0.00 0.00 0.00 4.63
525 532 2.522367 GGGTGGTTTGAGGGTCGGA 61.522 63.158 0.00 0.00 0.00 4.55
526 533 2.033602 GGGTGGTTTGAGGGTCGG 59.966 66.667 0.00 0.00 0.00 4.79
527 534 1.818959 TACGGGTGGTTTGAGGGTCG 61.819 60.000 0.00 0.00 0.00 4.79
528 535 0.397564 TTACGGGTGGTTTGAGGGTC 59.602 55.000 0.00 0.00 0.00 4.46
529 536 0.109153 GTTACGGGTGGTTTGAGGGT 59.891 55.000 0.00 0.00 0.00 4.34
530 537 0.108963 TGTTACGGGTGGTTTGAGGG 59.891 55.000 0.00 0.00 0.00 4.30
531 538 1.202722 ACTGTTACGGGTGGTTTGAGG 60.203 52.381 0.00 0.00 0.00 3.86
532 539 2.140717 GACTGTTACGGGTGGTTTGAG 58.859 52.381 0.00 0.00 0.00 3.02
534 541 1.871039 CAGACTGTTACGGGTGGTTTG 59.129 52.381 0.00 0.00 0.00 2.93
535 542 1.202722 CCAGACTGTTACGGGTGGTTT 60.203 52.381 0.93 0.00 0.00 3.27
536 543 0.395312 CCAGACTGTTACGGGTGGTT 59.605 55.000 0.93 0.00 0.00 3.67
538 545 0.902531 ATCCAGACTGTTACGGGTGG 59.097 55.000 8.14 8.14 0.00 4.61
539 546 1.469251 CGATCCAGACTGTTACGGGTG 60.469 57.143 0.93 0.00 0.00 4.61
540 547 0.815734 CGATCCAGACTGTTACGGGT 59.184 55.000 0.93 0.00 0.00 5.28
542 549 0.172578 TGCGATCCAGACTGTTACGG 59.827 55.000 0.93 0.00 0.00 4.02
545 552 1.831106 ACCATGCGATCCAGACTGTTA 59.169 47.619 0.93 0.00 0.00 2.41
550 557 1.592669 CGGACCATGCGATCCAGAC 60.593 63.158 8.96 0.00 34.35 3.51
551 558 2.796193 CCGGACCATGCGATCCAGA 61.796 63.158 0.00 0.00 34.35 3.86
553 560 2.762043 TCCGGACCATGCGATCCA 60.762 61.111 0.00 0.00 34.35 3.41
554 561 2.280186 GTCCGGACCATGCGATCC 60.280 66.667 24.75 0.00 30.86 3.36
555 562 2.658593 CGTCCGGACCATGCGATC 60.659 66.667 28.52 0.46 30.86 3.69
556 563 3.458163 ACGTCCGGACCATGCGAT 61.458 61.111 28.52 5.01 30.86 4.58
558 565 4.735132 ACACGTCCGGACCATGCG 62.735 66.667 28.52 18.80 0.00 4.73
559 566 1.512156 AAAACACGTCCGGACCATGC 61.512 55.000 28.52 3.72 0.00 4.06
560 567 0.237235 CAAAACACGTCCGGACCATG 59.763 55.000 28.52 26.50 0.00 3.66
561 568 0.179040 ACAAAACACGTCCGGACCAT 60.179 50.000 28.52 14.60 0.00 3.55
563 570 0.810823 TGACAAAACACGTCCGGACC 60.811 55.000 28.52 11.59 32.15 4.46
564 571 1.193874 GATGACAAAACACGTCCGGAC 59.806 52.381 25.28 25.28 32.15 4.79
565 572 1.504359 GATGACAAAACACGTCCGGA 58.496 50.000 0.00 0.00 32.15 5.14
566 573 0.515564 GGATGACAAAACACGTCCGG 59.484 55.000 0.00 0.00 33.45 5.14
567 574 1.222300 TGGATGACAAAACACGTCCG 58.778 50.000 0.00 0.00 42.96 4.79
568 575 3.701532 TTTGGATGACAAAACACGTCC 57.298 42.857 0.00 0.00 45.59 4.79
579 586 1.975837 TTTTCGCGCATTTGGATGAC 58.024 45.000 8.75 0.00 35.16 3.06
618 625 6.921857 TGAAAAACAATACGCGGGATTAAAAA 59.078 30.769 12.47 0.00 0.00 1.94
619 626 6.444633 TGAAAAACAATACGCGGGATTAAAA 58.555 32.000 12.47 0.00 0.00 1.52
620 627 6.010294 TGAAAAACAATACGCGGGATTAAA 57.990 33.333 12.47 0.00 0.00 1.52
623 630 4.506886 TTGAAAAACAATACGCGGGATT 57.493 36.364 12.47 6.90 33.18 3.01
626 633 3.634283 AGTTTGAAAAACAATACGCGGG 58.366 40.909 12.47 0.00 38.36 6.13
627 634 4.283678 TGAGTTTGAAAAACAATACGCGG 58.716 39.130 12.47 0.00 38.36 6.46
628 635 5.623264 TCATGAGTTTGAAAAACAATACGCG 59.377 36.000 3.53 3.53 38.36 6.01
629 636 6.984740 TCATGAGTTTGAAAAACAATACGC 57.015 33.333 5.72 0.00 38.36 4.42
630 637 8.560576 AGTTCATGAGTTTGAAAAACAATACG 57.439 30.769 5.72 0.00 37.36 3.06
665 672 7.227711 TCCACAGATTTGAAAAATAGTTCACGA 59.772 33.333 0.00 0.00 37.24 4.35
666 673 7.359595 TCCACAGATTTGAAAAATAGTTCACG 58.640 34.615 0.00 0.00 37.24 4.35
667 674 8.968242 GTTCCACAGATTTGAAAAATAGTTCAC 58.032 33.333 0.00 0.00 37.24 3.18
670 677 7.647715 CGTGTTCCACAGATTTGAAAAATAGTT 59.352 33.333 0.00 0.00 33.40 2.24
671 678 7.138736 CGTGTTCCACAGATTTGAAAAATAGT 58.861 34.615 0.00 0.00 33.40 2.12
673 680 5.918011 GCGTGTTCCACAGATTTGAAAAATA 59.082 36.000 0.00 0.00 33.40 1.40
674 681 4.744631 GCGTGTTCCACAGATTTGAAAAAT 59.255 37.500 0.00 0.00 33.40 1.82
680 687 0.865111 TCGCGTGTTCCACAGATTTG 59.135 50.000 5.77 0.00 33.40 2.32
682 689 0.865769 GTTCGCGTGTTCCACAGATT 59.134 50.000 5.77 0.00 33.40 2.40
685 692 0.655733 AAAGTTCGCGTGTTCCACAG 59.344 50.000 5.77 0.00 33.40 3.66
687 694 2.106418 GAAAAAGTTCGCGTGTTCCAC 58.894 47.619 5.77 0.00 0.00 4.02
688 695 2.011222 AGAAAAAGTTCGCGTGTTCCA 58.989 42.857 5.77 0.00 38.90 3.53
689 696 2.031191 TGAGAAAAAGTTCGCGTGTTCC 59.969 45.455 5.77 0.00 38.90 3.62
690 697 3.313274 TGAGAAAAAGTTCGCGTGTTC 57.687 42.857 5.77 0.00 38.90 3.18
691 698 3.750639 TTGAGAAAAAGTTCGCGTGTT 57.249 38.095 5.77 0.00 38.90 3.32
692 699 3.750639 TTTGAGAAAAAGTTCGCGTGT 57.249 38.095 5.77 0.00 38.90 4.49
693 700 4.732923 TGAATTTGAGAAAAAGTTCGCGTG 59.267 37.500 5.77 0.00 38.90 5.34
694 701 4.915704 TGAATTTGAGAAAAAGTTCGCGT 58.084 34.783 5.77 0.00 38.90 6.01
695 702 5.624900 TCATGAATTTGAGAAAAAGTTCGCG 59.375 36.000 0.00 0.00 38.90 5.87
696 703 6.991485 TCATGAATTTGAGAAAAAGTTCGC 57.009 33.333 0.00 0.00 38.90 4.70
786 793 6.529829 CGTTGACCAGATTCTCAAAACAAAAA 59.470 34.615 0.00 0.00 0.00 1.94
787 794 6.033341 CGTTGACCAGATTCTCAAAACAAAA 58.967 36.000 0.00 0.00 0.00 2.44
788 795 5.449862 CCGTTGACCAGATTCTCAAAACAAA 60.450 40.000 0.00 0.00 0.00 2.83
789 796 4.036262 CCGTTGACCAGATTCTCAAAACAA 59.964 41.667 0.00 0.00 0.00 2.83
790 797 3.563808 CCGTTGACCAGATTCTCAAAACA 59.436 43.478 0.00 0.00 0.00 2.83
792 799 3.815809 ACCGTTGACCAGATTCTCAAAA 58.184 40.909 0.00 0.00 0.00 2.44
793 800 3.485463 ACCGTTGACCAGATTCTCAAA 57.515 42.857 0.00 0.00 0.00 2.69
795 802 3.576982 ACTAACCGTTGACCAGATTCTCA 59.423 43.478 0.00 0.00 0.00 3.27
796 803 4.189639 ACTAACCGTTGACCAGATTCTC 57.810 45.455 0.00 0.00 0.00 2.87
827 834 5.165676 TCTCGCTCGCTAACTTATCAAAAA 58.834 37.500 0.00 0.00 0.00 1.94
828 835 4.740268 TCTCGCTCGCTAACTTATCAAAA 58.260 39.130 0.00 0.00 0.00 2.44
831 838 3.203716 TCTCTCGCTCGCTAACTTATCA 58.796 45.455 0.00 0.00 0.00 2.15
832 839 3.364565 CCTCTCTCGCTCGCTAACTTATC 60.365 52.174 0.00 0.00 0.00 1.75
833 840 2.550606 CCTCTCTCGCTCGCTAACTTAT 59.449 50.000 0.00 0.00 0.00 1.73
834 841 1.941294 CCTCTCTCGCTCGCTAACTTA 59.059 52.381 0.00 0.00 0.00 2.24
835 842 0.736053 CCTCTCTCGCTCGCTAACTT 59.264 55.000 0.00 0.00 0.00 2.66
837 844 1.096386 TCCCTCTCTCGCTCGCTAAC 61.096 60.000 0.00 0.00 0.00 2.34
838 845 0.816018 CTCCCTCTCTCGCTCGCTAA 60.816 60.000 0.00 0.00 0.00 3.09
846 853 1.153127 AGGTACGCTCCCTCTCTCG 60.153 63.158 0.00 0.00 0.00 4.04
850 857 1.889530 GCAACAGGTACGCTCCCTCT 61.890 60.000 0.00 0.00 0.00 3.69
854 861 1.741770 CCAGCAACAGGTACGCTCC 60.742 63.158 0.00 0.00 32.48 4.70
895 902 1.272781 CCTCTTCAGCGTCTTAAGCG 58.727 55.000 12.90 12.90 40.04 4.68
896 903 1.646189 CCCTCTTCAGCGTCTTAAGC 58.354 55.000 0.00 0.00 0.00 3.09
897 904 1.740718 GCCCCTCTTCAGCGTCTTAAG 60.741 57.143 0.00 0.00 0.00 1.85
898 905 0.249398 GCCCCTCTTCAGCGTCTTAA 59.751 55.000 0.00 0.00 0.00 1.85
902 909 2.185608 GAGCCCCTCTTCAGCGTC 59.814 66.667 0.00 0.00 0.00 5.19
919 929 1.003839 TTGGGCCAGTAGTTGCGAG 60.004 57.895 6.23 0.00 0.00 5.03
950 960 0.323629 TGGTGGGGATGAACGAAGTC 59.676 55.000 0.00 0.00 45.00 3.01
956 966 1.152963 CGGGATGGTGGGGATGAAC 60.153 63.158 0.00 0.00 0.00 3.18
1014 1052 2.359850 GCAAGGGACGACCATGCA 60.360 61.111 22.20 0.00 44.44 3.96
1100 1138 1.450312 GCTGACCCGGTGGAGATTG 60.450 63.158 0.00 0.00 34.81 2.67
1232 1276 2.111384 GAGGCCACATCCTAGAACAGA 58.889 52.381 5.01 0.00 36.38 3.41
1263 1307 1.800586 GAGTTGCACGATCAGCTTGAA 59.199 47.619 8.41 0.00 0.00 2.69
1267 1320 1.066645 TGATGAGTTGCACGATCAGCT 60.067 47.619 10.49 0.00 30.86 4.24
1271 1324 3.201290 AGGATTGATGAGTTGCACGATC 58.799 45.455 0.00 0.00 0.00 3.69
1272 1325 3.201290 GAGGATTGATGAGTTGCACGAT 58.799 45.455 0.00 0.00 0.00 3.73
1273 1326 2.028203 TGAGGATTGATGAGTTGCACGA 60.028 45.455 0.00 0.00 0.00 4.35
1274 1327 2.349590 TGAGGATTGATGAGTTGCACG 58.650 47.619 0.00 0.00 0.00 5.34
1275 1328 2.097142 GCTGAGGATTGATGAGTTGCAC 59.903 50.000 0.00 0.00 0.00 4.57
1276 1329 2.290450 TGCTGAGGATTGATGAGTTGCA 60.290 45.455 0.00 0.00 0.00 4.08
1277 1330 2.362736 TGCTGAGGATTGATGAGTTGC 58.637 47.619 0.00 0.00 0.00 4.17
1278 1331 4.035324 GTGATGCTGAGGATTGATGAGTTG 59.965 45.833 0.00 0.00 0.00 3.16
1279 1332 4.197750 GTGATGCTGAGGATTGATGAGTT 58.802 43.478 0.00 0.00 0.00 3.01
1306 1359 3.176411 TCATGAGCCGATTCTATCCCAT 58.824 45.455 0.00 0.00 0.00 4.00
1350 1407 0.631753 AGTGGCTAGCTAGTCCTGGA 59.368 55.000 22.30 0.57 0.00 3.86
1351 1408 1.137872 CAAGTGGCTAGCTAGTCCTGG 59.862 57.143 22.30 12.42 0.00 4.45
1359 1416 1.202580 CGCTTATCCAAGTGGCTAGCT 60.203 52.381 15.72 0.00 38.40 3.32
1360 1417 1.202533 TCGCTTATCCAAGTGGCTAGC 60.203 52.381 6.04 6.04 41.68 3.42
1380 1437 7.347222 TGAGATACACTTGGTATTTATCCACCT 59.653 37.037 0.00 0.00 42.76 4.00
1406 1463 4.238514 GCGCGAGAAGATTGTAATAGGAT 58.761 43.478 12.10 0.00 0.00 3.24
1412 1469 3.000041 ACATTGCGCGAGAAGATTGTAA 59.000 40.909 12.10 0.00 0.00 2.41
1416 1473 3.262420 ACTAACATTGCGCGAGAAGATT 58.738 40.909 12.10 2.85 0.00 2.40
1444 1549 5.440610 CACTAGAACTAGCCATTTCCCAAT 58.559 41.667 8.54 0.00 36.66 3.16
1453 1558 2.248248 ACACTGCACTAGAACTAGCCA 58.752 47.619 8.54 5.91 36.66 4.75
1486 1591 1.470098 CAGCAAGCATCTTACACACCC 59.530 52.381 0.00 0.00 0.00 4.61
1514 1619 0.250513 CTCTAACACCTGGACTGGGC 59.749 60.000 0.00 0.00 0.00 5.36
1515 1620 1.827969 CTCTCTAACACCTGGACTGGG 59.172 57.143 0.00 0.00 0.00 4.45
1516 1621 2.808919 TCTCTCTAACACCTGGACTGG 58.191 52.381 0.00 0.00 0.00 4.00
1517 1622 4.082845 TCTTCTCTCTAACACCTGGACTG 58.917 47.826 0.00 0.00 0.00 3.51
1518 1623 4.340617 CTCTTCTCTCTAACACCTGGACT 58.659 47.826 0.00 0.00 0.00 3.85
1577 1704 3.674997 AGCAAATATCCACACGAACACT 58.325 40.909 0.00 0.00 0.00 3.55
1581 1708 4.574892 TCAGAAGCAAATATCCACACGAA 58.425 39.130 0.00 0.00 0.00 3.85
1584 1711 5.886960 AGTTCAGAAGCAAATATCCACAC 57.113 39.130 0.00 0.00 0.00 3.82
1592 1719 4.706962 GGGGTTCATAGTTCAGAAGCAAAT 59.293 41.667 0.00 0.00 42.37 2.32
1616 1743 1.135083 CAGGTAACGTGCTAGGGACAG 60.135 57.143 0.00 0.00 46.39 3.51
1617 1744 0.892755 CAGGTAACGTGCTAGGGACA 59.107 55.000 0.00 0.00 46.39 4.02
1620 1747 0.892755 TGTCAGGTAACGTGCTAGGG 59.107 55.000 0.00 0.00 46.39 3.53
1651 1791 5.177326 ACAATGCTGTGCAAAAAGAAAAGA 58.823 33.333 0.00 0.00 43.62 2.52
1652 1792 5.473796 ACAATGCTGTGCAAAAAGAAAAG 57.526 34.783 0.00 0.00 43.62 2.27
1653 1793 6.974932 TTACAATGCTGTGCAAAAAGAAAA 57.025 29.167 0.00 0.00 43.62 2.29
1654 1794 6.974932 TTTACAATGCTGTGCAAAAAGAAA 57.025 29.167 0.00 0.00 43.62 2.52
1655 1795 6.511444 GCATTTACAATGCTGTGCAAAAAGAA 60.511 34.615 13.16 0.00 43.62 2.52
1656 1796 5.050227 GCATTTACAATGCTGTGCAAAAAGA 60.050 36.000 13.16 0.00 43.62 2.52
1671 1811 6.817641 CAGGATTAAAAGCATGGCATTTACAA 59.182 34.615 0.00 0.00 32.71 2.41
1696 1836 3.278574 GGGAAGGGGCATTTTTATTTGC 58.721 45.455 0.00 0.00 38.14 3.68
1702 1842 0.792960 AGAGGGGAAGGGGCATTTTT 59.207 50.000 0.00 0.00 0.00 1.94
1709 1850 4.089757 TCGGGAGAGGGGAAGGGG 62.090 72.222 0.00 0.00 0.00 4.79
1722 1863 3.398353 GAGGAAGCGAGACGTCGGG 62.398 68.421 10.46 7.23 46.91 5.14
1723 1864 1.088340 TAGAGGAAGCGAGACGTCGG 61.088 60.000 10.46 7.62 46.91 4.79
1728 1869 1.402613 GTCCACTAGAGGAAGCGAGAC 59.597 57.143 10.79 0.00 39.92 3.36
1742 1883 1.227263 GTGTGAGCGTGTGTCCACT 60.227 57.895 0.00 0.00 39.55 4.00
1798 1939 3.309682 TCTGTTTGCTCTGTTTTGTCTCG 59.690 43.478 0.00 0.00 0.00 4.04
1807 1948 5.317808 TCTCTACTACTCTGTTTGCTCTGT 58.682 41.667 0.00 0.00 0.00 3.41
1813 1954 5.473846 TGGTGTCTCTCTACTACTCTGTTTG 59.526 44.000 0.00 0.00 0.00 2.93
1820 1961 7.144234 ACATATCTGGTGTCTCTCTACTACT 57.856 40.000 0.00 0.00 0.00 2.57
1821 1962 6.993308 TGACATATCTGGTGTCTCTCTACTAC 59.007 42.308 7.65 0.00 44.80 2.73
1822 1963 6.993308 GTGACATATCTGGTGTCTCTCTACTA 59.007 42.308 7.65 0.00 44.80 1.82
1898 2046 4.194640 GTTGCTGATTAGAGAAGCATCCA 58.805 43.478 0.00 0.00 45.75 3.41
1993 2141 5.703130 GGCAGTCCCATCTTGTAATTCTATC 59.297 44.000 0.00 0.00 0.00 2.08
1998 2146 3.737559 TGGCAGTCCCATCTTGTAATT 57.262 42.857 0.00 0.00 39.18 1.40
2019 2167 8.143835 GGTCGGTTAGTTAGCCTATAAATGTAA 58.856 37.037 0.00 0.00 0.00 2.41
2080 2228 0.107456 CCAAGCTGTGTCTGACCAGT 59.893 55.000 20.09 9.87 0.00 4.00
2081 2229 1.233285 GCCAAGCTGTGTCTGACCAG 61.233 60.000 16.91 16.91 0.00 4.00
2177 2334 8.432359 CGAAAGAGGCAAATTGGTTTTAATTAC 58.568 33.333 0.00 0.00 30.47 1.89
2178 2335 8.145122 ACGAAAGAGGCAAATTGGTTTTAATTA 58.855 29.630 0.00 0.00 30.47 1.40
2227 2388 6.884295 AGAATTAAGTTACCAGCATGCAACTA 59.116 34.615 21.98 6.98 38.41 2.24
2365 2531 1.391577 CAATGCCGTGGATGGATTGA 58.608 50.000 0.00 0.00 32.72 2.57
2527 2693 1.533625 TCAGATTGGCAAAAGGACCG 58.466 50.000 3.01 0.00 0.00 4.79
2570 2737 9.823098 GTTATAATCATCTCATGACAGCATTTC 57.177 33.333 0.00 0.00 43.01 2.17
2666 2833 8.690884 TCAGTATTTCCATTTCTTTTGTGTGAA 58.309 29.630 0.00 0.00 0.00 3.18
2856 3027 1.555477 CAAACGACTTGTTGGCAACC 58.445 50.000 26.31 10.73 40.84 3.77
2885 3057 4.410492 GGCAGCATGACTAATTATTCCG 57.590 45.455 0.00 0.00 44.72 4.30
2926 3105 4.677832 CGGTAATGCAGTACAAACAAAACC 59.322 41.667 24.19 6.75 0.00 3.27
2932 3111 1.789054 GCGCGGTAATGCAGTACAAAC 60.789 52.381 24.19 12.34 34.15 2.93
3037 3243 8.410912 ACTGAATTTAACCAAACCAAACTAGTC 58.589 33.333 0.00 0.00 0.00 2.59
3204 3435 3.058501 GGCACCGATTAACAATTATCCGG 60.059 47.826 0.00 0.00 36.87 5.14
3211 3442 2.943033 GCTAGTGGCACCGATTAACAAT 59.057 45.455 15.27 0.00 41.35 2.71
3221 3452 2.990066 ATAACAGAGCTAGTGGCACC 57.010 50.000 15.27 0.00 44.79 5.01
3233 3464 6.652205 AGGAACCAAAGGGAATATAACAGA 57.348 37.500 0.00 0.00 38.05 3.41
3288 3524 8.268605 TGCCCTATGTATGATAAACTACAAACA 58.731 33.333 0.00 0.00 32.02 2.83
3372 3611 3.261897 GGGAGACAACCTCTGAAGATTCA 59.738 47.826 0.00 0.00 41.66 2.57
3373 3612 3.677424 CGGGAGACAACCTCTGAAGATTC 60.677 52.174 0.00 0.00 41.66 2.52
3374 3613 2.234908 CGGGAGACAACCTCTGAAGATT 59.765 50.000 0.00 0.00 41.66 2.40
3375 3614 1.827969 CGGGAGACAACCTCTGAAGAT 59.172 52.381 0.00 0.00 41.66 2.40
3377 3616 0.390472 GCGGGAGACAACCTCTGAAG 60.390 60.000 0.00 0.00 41.66 3.02
3379 3618 2.283529 GGCGGGAGACAACCTCTGA 61.284 63.158 0.00 0.00 41.66 3.27
3380 3619 2.266055 GGCGGGAGACAACCTCTG 59.734 66.667 0.00 0.00 41.66 3.35
3388 3627 0.730840 CCGTAAAATTGGCGGGAGAC 59.269 55.000 7.47 0.00 41.60 3.36
3389 3628 3.162448 CCGTAAAATTGGCGGGAGA 57.838 52.632 7.47 0.00 41.60 3.71
3393 3632 0.454196 CCTTCCCGTAAAATTGGCGG 59.546 55.000 8.17 8.17 44.55 6.13
3395 3634 1.475280 GTCCCTTCCCGTAAAATTGGC 59.525 52.381 0.00 0.00 0.00 4.52
3396 3635 3.081710 AGTCCCTTCCCGTAAAATTGG 57.918 47.619 0.00 0.00 0.00 3.16
3397 3636 4.696899 GAAGTCCCTTCCCGTAAAATTG 57.303 45.455 0.00 0.00 34.71 2.32
3410 3649 7.552612 TTCCATCTACCAGAAGGAAGTCCCT 62.553 48.000 8.42 0.00 44.41 4.20
3411 3650 2.436173 CCATCTACCAGAAGGAAGTCCC 59.564 54.545 0.00 0.00 35.17 4.46
3412 3651 3.375699 TCCATCTACCAGAAGGAAGTCC 58.624 50.000 0.00 0.00 38.97 3.85
3421 3660 5.514834 CCAAACTTTCCTTCCATCTACCAGA 60.515 44.000 0.00 0.00 0.00 3.86
3422 3661 4.702131 CCAAACTTTCCTTCCATCTACCAG 59.298 45.833 0.00 0.00 0.00 4.00
3423 3662 4.508405 CCCAAACTTTCCTTCCATCTACCA 60.508 45.833 0.00 0.00 0.00 3.25
3425 3664 4.918588 TCCCAAACTTTCCTTCCATCTAC 58.081 43.478 0.00 0.00 0.00 2.59
3426 3665 4.849810 TCTCCCAAACTTTCCTTCCATCTA 59.150 41.667 0.00 0.00 0.00 1.98
3427 3666 3.657727 TCTCCCAAACTTTCCTTCCATCT 59.342 43.478 0.00 0.00 0.00 2.90
3428 3667 4.034285 TCTCCCAAACTTTCCTTCCATC 57.966 45.455 0.00 0.00 0.00 3.51
3430 3669 3.963476 TTCTCCCAAACTTTCCTTCCA 57.037 42.857 0.00 0.00 0.00 3.53
3431 3670 5.808366 AAATTCTCCCAAACTTTCCTTCC 57.192 39.130 0.00 0.00 0.00 3.46
3432 3671 7.284919 TGTAAATTCTCCCAAACTTTCCTTC 57.715 36.000 0.00 0.00 0.00 3.46
3434 3673 5.775195 CCTGTAAATTCTCCCAAACTTTCCT 59.225 40.000 0.00 0.00 0.00 3.36
3436 3675 6.894339 TCCTGTAAATTCTCCCAAACTTTC 57.106 37.500 0.00 0.00 0.00 2.62
3437 3676 6.437477 GGATCCTGTAAATTCTCCCAAACTTT 59.563 38.462 3.84 0.00 0.00 2.66
3438 3677 5.952347 GGATCCTGTAAATTCTCCCAAACTT 59.048 40.000 3.84 0.00 0.00 2.66
3439 3678 5.510430 GGATCCTGTAAATTCTCCCAAACT 58.490 41.667 3.84 0.00 0.00 2.66
3440 3679 4.645136 GGGATCCTGTAAATTCTCCCAAAC 59.355 45.833 12.58 0.00 41.67 2.93
3441 3680 4.867086 GGGATCCTGTAAATTCTCCCAAA 58.133 43.478 12.58 0.00 41.67 3.28
3444 3683 4.731313 ATGGGATCCTGTAAATTCTCCC 57.269 45.455 12.58 0.00 42.27 4.30
3445 3684 8.533569 TTTTTATGGGATCCTGTAAATTCTCC 57.466 34.615 12.58 0.00 0.00 3.71
3468 3707 6.038050 TCAGTTCCGGTAAACGTACAATTTTT 59.962 34.615 0.00 0.00 42.24 1.94
3469 3708 5.526846 TCAGTTCCGGTAAACGTACAATTTT 59.473 36.000 0.00 0.00 42.24 1.82
3472 3711 4.240096 CTCAGTTCCGGTAAACGTACAAT 58.760 43.478 0.00 0.00 42.24 2.71
3474 3713 2.622942 ACTCAGTTCCGGTAAACGTACA 59.377 45.455 0.00 0.00 42.24 2.90
3475 3714 3.288809 ACTCAGTTCCGGTAAACGTAC 57.711 47.619 0.00 0.00 42.24 3.67
3476 3715 4.320608 AAACTCAGTTCCGGTAAACGTA 57.679 40.909 0.00 0.00 42.24 3.57
3478 3717 4.541085 AAAAACTCAGTTCCGGTAAACG 57.459 40.909 0.00 0.00 43.80 3.60
3497 3736 5.110598 GTTTCGGAAAAGTTAGGCCAAAAA 58.889 37.500 5.01 0.00 0.00 1.94
3498 3737 4.441773 GGTTTCGGAAAAGTTAGGCCAAAA 60.442 41.667 5.01 0.00 0.00 2.44
3499 3738 3.068448 GGTTTCGGAAAAGTTAGGCCAAA 59.932 43.478 5.01 0.00 0.00 3.28
3501 3740 2.232399 GGTTTCGGAAAAGTTAGGCCA 58.768 47.619 5.01 0.00 0.00 5.36
3503 3742 4.514781 AATGGTTTCGGAAAAGTTAGGC 57.485 40.909 4.46 0.00 0.00 3.93
3505 3744 7.385778 TCCATAATGGTTTCGGAAAAGTTAG 57.614 36.000 4.46 1.13 39.03 2.34
3506 3745 7.948034 ATCCATAATGGTTTCGGAAAAGTTA 57.052 32.000 4.46 5.54 39.03 2.24
3508 3747 6.320418 GGTATCCATAATGGTTTCGGAAAAGT 59.680 38.462 4.46 0.00 39.03 2.66
3509 3748 6.512741 CGGTATCCATAATGGTTTCGGAAAAG 60.513 42.308 4.46 0.00 39.03 2.27
3510 3749 5.297278 CGGTATCCATAATGGTTTCGGAAAA 59.703 40.000 4.46 0.00 39.03 2.29
3511 3750 4.817464 CGGTATCCATAATGGTTTCGGAAA 59.183 41.667 0.00 0.00 39.03 3.13
3512 3751 4.382291 CGGTATCCATAATGGTTTCGGAA 58.618 43.478 0.00 0.00 39.03 4.30
3515 3754 3.997762 TCCGGTATCCATAATGGTTTCG 58.002 45.455 0.00 0.00 39.03 3.46
3516 3755 6.264518 ACAATTCCGGTATCCATAATGGTTTC 59.735 38.462 0.00 0.00 39.03 2.78
3518 3757 5.701224 ACAATTCCGGTATCCATAATGGTT 58.299 37.500 0.00 0.00 39.03 3.67
3519 3758 5.319043 ACAATTCCGGTATCCATAATGGT 57.681 39.130 0.00 0.00 39.03 3.55
3520 3759 5.048083 CCAACAATTCCGGTATCCATAATGG 60.048 44.000 0.00 0.00 39.43 3.16
3521 3760 5.767665 TCCAACAATTCCGGTATCCATAATG 59.232 40.000 0.00 0.00 0.00 1.90
3522 3761 5.947663 TCCAACAATTCCGGTATCCATAAT 58.052 37.500 0.00 0.00 0.00 1.28
3523 3762 5.131308 TCTCCAACAATTCCGGTATCCATAA 59.869 40.000 0.00 0.00 0.00 1.90
3525 3764 3.458118 TCTCCAACAATTCCGGTATCCAT 59.542 43.478 0.00 0.00 0.00 3.41
3526 3765 2.841266 TCTCCAACAATTCCGGTATCCA 59.159 45.455 0.00 0.00 0.00 3.41
3529 3768 4.503714 ACATCTCCAACAATTCCGGTAT 57.496 40.909 0.00 0.00 0.00 2.73
3530 3769 3.992943 ACATCTCCAACAATTCCGGTA 57.007 42.857 0.00 0.00 0.00 4.02
3531 3770 2.879103 ACATCTCCAACAATTCCGGT 57.121 45.000 0.00 0.00 0.00 5.28
3532 3771 3.081061 TGAACATCTCCAACAATTCCGG 58.919 45.455 0.00 0.00 0.00 5.14
3534 3773 5.413499 CCAATGAACATCTCCAACAATTCC 58.587 41.667 0.00 0.00 0.00 3.01
3536 3775 4.322953 GCCCAATGAACATCTCCAACAATT 60.323 41.667 0.00 0.00 0.00 2.32
3540 3779 2.450476 AGCCCAATGAACATCTCCAAC 58.550 47.619 0.00 0.00 0.00 3.77
3544 3783 5.397142 AAAGAAAGCCCAATGAACATCTC 57.603 39.130 0.00 0.00 0.00 2.75
3566 3805 3.611025 ATTGACCCCCTCTTGACAAAA 57.389 42.857 0.00 0.00 0.00 2.44
3567 3806 3.010138 CCTATTGACCCCCTCTTGACAAA 59.990 47.826 0.00 0.00 0.00 2.83
3568 3807 2.576191 CCTATTGACCCCCTCTTGACAA 59.424 50.000 0.00 0.00 0.00 3.18
3569 3808 2.196595 CCTATTGACCCCCTCTTGACA 58.803 52.381 0.00 0.00 0.00 3.58
3571 3810 2.225779 TGACCTATTGACCCCCTCTTGA 60.226 50.000 0.00 0.00 0.00 3.02
3572 3811 2.196595 TGACCTATTGACCCCCTCTTG 58.803 52.381 0.00 0.00 0.00 3.02
3577 3816 5.310857 AGAGATTATTGACCTATTGACCCCC 59.689 44.000 0.00 0.00 0.00 5.40
3578 3817 6.441088 AGAGATTATTGACCTATTGACCCC 57.559 41.667 0.00 0.00 0.00 4.95
3579 3818 7.283329 ACAAGAGATTATTGACCTATTGACCC 58.717 38.462 0.00 0.00 34.38 4.46
3580 3819 8.738645 AACAAGAGATTATTGACCTATTGACC 57.261 34.615 0.00 0.00 34.38 4.02
3585 3824 8.897752 GCTCAAAACAAGAGATTATTGACCTAT 58.102 33.333 0.00 0.00 35.09 2.57
3586 3825 7.882791 TGCTCAAAACAAGAGATTATTGACCTA 59.117 33.333 0.00 0.00 35.09 3.08
3587 3826 6.716628 TGCTCAAAACAAGAGATTATTGACCT 59.283 34.615 0.00 0.00 35.09 3.85
3588 3827 6.913170 TGCTCAAAACAAGAGATTATTGACC 58.087 36.000 0.00 0.00 35.09 4.02
3589 3828 8.976986 AATGCTCAAAACAAGAGATTATTGAC 57.023 30.769 0.00 0.00 35.09 3.18
3590 3829 9.414295 CAAATGCTCAAAACAAGAGATTATTGA 57.586 29.630 0.00 0.00 35.09 2.57
3591 3830 9.199982 ACAAATGCTCAAAACAAGAGATTATTG 57.800 29.630 0.00 0.00 35.09 1.90
3592 3831 9.768662 AACAAATGCTCAAAACAAGAGATTATT 57.231 25.926 0.00 0.00 35.09 1.40
3593 3832 9.415544 GAACAAATGCTCAAAACAAGAGATTAT 57.584 29.630 0.00 0.00 35.09 1.28
3594 3833 8.632679 AGAACAAATGCTCAAAACAAGAGATTA 58.367 29.630 0.00 0.00 35.09 1.75
3595 3834 7.495055 AGAACAAATGCTCAAAACAAGAGATT 58.505 30.769 0.00 0.00 35.09 2.40
3596 3835 7.047460 AGAACAAATGCTCAAAACAAGAGAT 57.953 32.000 0.00 0.00 35.09 2.75
3597 3836 6.455360 AGAACAAATGCTCAAAACAAGAGA 57.545 33.333 0.00 0.00 35.09 3.10
3598 3837 7.096312 GCTTAGAACAAATGCTCAAAACAAGAG 60.096 37.037 0.00 0.00 36.21 2.85
3599 3838 6.697019 GCTTAGAACAAATGCTCAAAACAAGA 59.303 34.615 0.00 0.00 0.00 3.02
3600 3839 6.698766 AGCTTAGAACAAATGCTCAAAACAAG 59.301 34.615 0.00 0.00 0.00 3.16
3601 3840 6.476380 CAGCTTAGAACAAATGCTCAAAACAA 59.524 34.615 0.00 0.00 0.00 2.83
3609 4260 2.517959 TGGCAGCTTAGAACAAATGCT 58.482 42.857 0.00 0.00 34.19 3.79
3611 4262 3.058293 TCGTTGGCAGCTTAGAACAAATG 60.058 43.478 0.00 0.00 0.00 2.32
3617 4268 0.673644 GGCTCGTTGGCAGCTTAGAA 60.674 55.000 0.00 0.00 41.37 2.10
3620 4271 2.747022 TGGCTCGTTGGCAGCTTA 59.253 55.556 0.00 0.00 46.76 3.09
3626 4277 4.389576 CGCAGTTGGCTCGTTGGC 62.390 66.667 0.00 0.00 41.67 4.52
3628 4279 2.551270 GTCGCAGTTGGCTCGTTG 59.449 61.111 0.00 0.00 41.67 4.10
3629 4280 2.665185 GGTCGCAGTTGGCTCGTT 60.665 61.111 0.00 0.00 41.67 3.85
3630 4281 3.923864 TGGTCGCAGTTGGCTCGT 61.924 61.111 0.00 0.00 41.67 4.18
3631 4282 3.414700 GTGGTCGCAGTTGGCTCG 61.415 66.667 0.00 0.00 41.67 5.03
3632 4283 3.050275 GGTGGTCGCAGTTGGCTC 61.050 66.667 0.00 0.00 41.67 4.70
3633 4284 4.643387 GGGTGGTCGCAGTTGGCT 62.643 66.667 0.00 0.00 41.67 4.75
3634 4285 4.947147 TGGGTGGTCGCAGTTGGC 62.947 66.667 0.00 0.00 39.90 4.52
3635 4286 2.669569 CTGGGTGGTCGCAGTTGG 60.670 66.667 4.52 0.00 45.54 3.77
3642 4293 2.509336 GATGCGTCTGGGTGGTCG 60.509 66.667 0.00 0.00 0.00 4.79
3643 4294 2.125106 GGATGCGTCTGGGTGGTC 60.125 66.667 5.77 0.00 0.00 4.02
3650 4301 7.064966 TGAGCAATATATTTATGGATGCGTCTG 59.935 37.037 5.77 0.00 37.40 3.51
3684 4335 4.020928 TGGGCGTTTGTTACTTGATCTCTA 60.021 41.667 0.00 0.00 0.00 2.43
3686 4337 3.071479 TGGGCGTTTGTTACTTGATCTC 58.929 45.455 0.00 0.00 0.00 2.75
3691 4342 2.875933 TCTCTTGGGCGTTTGTTACTTG 59.124 45.455 0.00 0.00 0.00 3.16
3699 4350 2.859165 TCTTCATCTCTTGGGCGTTT 57.141 45.000 0.00 0.00 0.00 3.60
3702 4353 4.065321 AGTTATCTTCATCTCTTGGGCG 57.935 45.455 0.00 0.00 0.00 6.13
3703 4354 4.578105 CCAAGTTATCTTCATCTCTTGGGC 59.422 45.833 12.23 0.00 44.41 5.36
3707 4358 6.479884 ACTTGCCAAGTTATCTTCATCTCTT 58.520 36.000 3.74 0.00 39.04 2.85
3721 4372 0.395586 TGCTCCACAACTTGCCAAGT 60.396 50.000 3.74 3.74 45.46 3.16
3755 4406 8.818057 CAGAGCAGTAAATGTATGTTTAGGTAC 58.182 37.037 0.00 0.00 0.00 3.34
3835 4488 9.952188 GCTTTTAGAGAGAAAACAAGTACATTT 57.048 29.630 0.00 0.00 0.00 2.32
3836 4489 9.120538 TGCTTTTAGAGAGAAAACAAGTACATT 57.879 29.630 0.00 0.00 0.00 2.71
3837 4490 8.677148 TGCTTTTAGAGAGAAAACAAGTACAT 57.323 30.769 0.00 0.00 0.00 2.29
3842 4499 6.795399 TGGTTGCTTTTAGAGAGAAAACAAG 58.205 36.000 0.00 0.00 0.00 3.16
3847 4504 5.531287 GTCCTTGGTTGCTTTTAGAGAGAAA 59.469 40.000 0.00 0.00 0.00 2.52
3863 4520 3.135167 TGTCCTTTAAAGACGTCCTTGGT 59.865 43.478 16.98 0.00 37.04 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.