Multiple sequence alignment - TraesCS7A01G031100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G031100 | chr7A | 100.000 | 4722 | 0 | 0 | 1 | 4722 | 12907719 | 12912440 | 0.000000e+00 | 8720.0 |
1 | TraesCS7A01G031100 | chr7A | 82.192 | 365 | 36 | 12 | 3449 | 3788 | 12973970 | 12974330 | 2.150000e-73 | 287.0 |
2 | TraesCS7A01G031100 | chr7A | 82.822 | 326 | 43 | 10 | 3034 | 3349 | 13205359 | 13205037 | 3.600000e-71 | 279.0 |
3 | TraesCS7A01G031100 | chr7A | 81.667 | 300 | 34 | 15 | 4020 | 4310 | 2740482 | 2740195 | 3.680000e-56 | 230.0 |
4 | TraesCS7A01G031100 | chr7A | 88.372 | 86 | 8 | 1 | 3809 | 3894 | 12979806 | 12979889 | 8.360000e-18 | 102.0 |
5 | TraesCS7A01G031100 | chr7A | 77.576 | 165 | 19 | 9 | 3686 | 3839 | 2740894 | 2740737 | 3.030000e-12 | 84.2 |
6 | TraesCS7A01G031100 | chr7A | 91.525 | 59 | 1 | 3 | 3781 | 3836 | 12982113 | 12982170 | 1.410000e-10 | 78.7 |
7 | TraesCS7A01G031100 | chr7A | 100.000 | 28 | 0 | 0 | 3815 | 3842 | 12982244 | 12982271 | 9.000000e-03 | 52.8 |
8 | TraesCS7A01G031100 | chr4A | 90.221 | 3886 | 274 | 54 | 600 | 4451 | 723640352 | 723636539 | 0.000000e+00 | 4974.0 |
9 | TraesCS7A01G031100 | chr4A | 87.826 | 1035 | 87 | 24 | 3473 | 4476 | 723141758 | 723140732 | 0.000000e+00 | 1177.0 |
10 | TraesCS7A01G031100 | chr4A | 92.802 | 514 | 32 | 1 | 2840 | 3348 | 723142358 | 723141845 | 0.000000e+00 | 739.0 |
11 | TraesCS7A01G031100 | chr4A | 84.516 | 465 | 54 | 7 | 1949 | 2406 | 723203778 | 723203325 | 1.210000e-120 | 444.0 |
12 | TraesCS7A01G031100 | chr4A | 84.833 | 389 | 52 | 6 | 3959 | 4343 | 742065966 | 742065581 | 7.410000e-103 | 385.0 |
13 | TraesCS7A01G031100 | chr4A | 84.896 | 384 | 51 | 6 | 3959 | 4338 | 739659185 | 739658805 | 9.590000e-102 | 381.0 |
14 | TraesCS7A01G031100 | chr4A | 76.979 | 682 | 108 | 24 | 3168 | 3841 | 742067585 | 742066945 | 1.260000e-90 | 344.0 |
15 | TraesCS7A01G031100 | chr4A | 76.833 | 682 | 109 | 24 | 3168 | 3841 | 739660806 | 739660166 | 5.850000e-89 | 339.0 |
16 | TraesCS7A01G031100 | chr4A | 80.381 | 367 | 51 | 13 | 4093 | 4449 | 739896526 | 739896171 | 4.690000e-65 | 259.0 |
17 | TraesCS7A01G031100 | chr4A | 88.517 | 209 | 23 | 1 | 3138 | 3346 | 723206172 | 723205965 | 7.840000e-63 | 252.0 |
18 | TraesCS7A01G031100 | chr4A | 85.200 | 250 | 28 | 5 | 3483 | 3723 | 741028511 | 741028262 | 1.010000e-61 | 248.0 |
19 | TraesCS7A01G031100 | chr4A | 85.965 | 171 | 20 | 4 | 4170 | 4339 | 723205044 | 723204877 | 3.750000e-41 | 180.0 |
20 | TraesCS7A01G031100 | chr4A | 82.160 | 213 | 14 | 13 | 1 | 197 | 723640921 | 723640717 | 1.360000e-35 | 161.0 |
21 | TraesCS7A01G031100 | chr4A | 81.176 | 170 | 23 | 3 | 2891 | 3052 | 723203225 | 723203057 | 1.380000e-25 | 128.0 |
22 | TraesCS7A01G031100 | chr4A | 78.698 | 169 | 24 | 10 | 2954 | 3121 | 739660948 | 739660791 | 8.360000e-18 | 102.0 |
23 | TraesCS7A01G031100 | chr4A | 78.698 | 169 | 24 | 10 | 2954 | 3121 | 742067727 | 742067570 | 8.360000e-18 | 102.0 |
24 | TraesCS7A01G031100 | chr7D | 91.931 | 3371 | 188 | 43 | 1 | 3334 | 13474227 | 13477550 | 0.000000e+00 | 4641.0 |
25 | TraesCS7A01G031100 | chr7D | 89.849 | 926 | 60 | 20 | 3459 | 4375 | 13477617 | 13478517 | 0.000000e+00 | 1158.0 |
26 | TraesCS7A01G031100 | chr7D | 80.357 | 616 | 87 | 25 | 3730 | 4331 | 13488132 | 13488727 | 2.020000e-118 | 436.0 |
27 | TraesCS7A01G031100 | chr7D | 89.342 | 319 | 16 | 14 | 498 | 803 | 414346663 | 414346350 | 7.410000e-103 | 385.0 |
28 | TraesCS7A01G031100 | chr7D | 83.733 | 375 | 52 | 6 | 3470 | 3839 | 2887667 | 2888037 | 3.500000e-91 | 346.0 |
29 | TraesCS7A01G031100 | chr7D | 81.988 | 322 | 46 | 9 | 4103 | 4420 | 3709924 | 3710237 | 3.620000e-66 | 263.0 |
30 | TraesCS7A01G031100 | chrUn | 93.812 | 404 | 23 | 1 | 3162 | 3565 | 367671454 | 367671855 | 1.450000e-169 | 606.0 |
31 | TraesCS7A01G031100 | chr4D | 90.000 | 310 | 21 | 8 | 498 | 803 | 212645021 | 212645324 | 4.430000e-105 | 392.0 |
32 | TraesCS7A01G031100 | chr5A | 88.462 | 312 | 26 | 7 | 498 | 803 | 465157268 | 465157575 | 7.470000e-98 | 368.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G031100 | chr7A | 12907719 | 12912440 | 4721 | False | 8720.0 | 8720 | 100.000000 | 1 | 4722 | 1 | chr7A.!!$F1 | 4721 |
1 | TraesCS7A01G031100 | chr4A | 723636539 | 723640921 | 4382 | True | 2567.5 | 4974 | 86.190500 | 1 | 4451 | 2 | chr4A.!!$R5 | 4450 |
2 | TraesCS7A01G031100 | chr4A | 723140732 | 723142358 | 1626 | True | 958.0 | 1177 | 90.314000 | 2840 | 4476 | 2 | chr4A.!!$R3 | 1636 |
3 | TraesCS7A01G031100 | chr4A | 742065581 | 742067727 | 2146 | True | 277.0 | 385 | 80.170000 | 2954 | 4343 | 3 | chr4A.!!$R7 | 1389 |
4 | TraesCS7A01G031100 | chr4A | 739658805 | 739660948 | 2143 | True | 274.0 | 381 | 80.142333 | 2954 | 4338 | 3 | chr4A.!!$R6 | 1384 |
5 | TraesCS7A01G031100 | chr4A | 723203057 | 723206172 | 3115 | True | 251.0 | 444 | 85.043500 | 1949 | 4339 | 4 | chr4A.!!$R4 | 2390 |
6 | TraesCS7A01G031100 | chr7D | 13474227 | 13478517 | 4290 | False | 2899.5 | 4641 | 90.890000 | 1 | 4375 | 2 | chr7D.!!$F4 | 4374 |
7 | TraesCS7A01G031100 | chr7D | 13488132 | 13488727 | 595 | False | 436.0 | 436 | 80.357000 | 3730 | 4331 | 1 | chr7D.!!$F3 | 601 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
937 | 1021 | 0.035056 | ACCCTCTGCCATGTGTTAGC | 60.035 | 55.0 | 0.0 | 0.0 | 0.00 | 3.09 | F |
938 | 1022 | 0.035152 | CCCTCTGCCATGTGTTAGCA | 60.035 | 55.0 | 0.0 | 0.0 | 34.79 | 3.49 | F |
2249 | 2342 | 0.673644 | TTGAGGACCTAGCAAAGCGC | 60.674 | 55.0 | 0.0 | 0.0 | 42.91 | 5.92 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2249 | 2342 | 0.035630 | CCACCTTCTTCCAGCAGAGG | 60.036 | 60.0 | 0.00 | 0.0 | 0.00 | 3.69 | R |
2788 | 2882 | 0.458669 | GCATTGTGATGGCCTTGAGG | 59.541 | 55.0 | 3.32 | 0.0 | 33.72 | 3.86 | R |
4238 | 5537 | 0.178981 | ACCAGCACATTCAGCTTGGT | 60.179 | 50.0 | 0.00 | 0.0 | 41.14 | 3.67 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
33 | 39 | 4.844349 | ATAACTAGCCTGAACACATGGT | 57.156 | 40.909 | 0.00 | 0.00 | 0.00 | 3.55 |
142 | 162 | 4.161295 | TGCCGGATTGCCTCCTCG | 62.161 | 66.667 | 5.05 | 0.00 | 42.47 | 4.63 |
233 | 289 | 4.472470 | GGTAAGGTAACCTTATCCCACACT | 59.528 | 45.833 | 0.00 | 0.00 | 46.16 | 3.55 |
234 | 290 | 4.569719 | AAGGTAACCTTATCCCACACTG | 57.430 | 45.455 | 0.00 | 0.00 | 42.74 | 3.66 |
298 | 354 | 4.322349 | CCGAGCTTAGGATAGGGATTTCAG | 60.322 | 50.000 | 3.30 | 0.00 | 0.00 | 3.02 |
327 | 383 | 5.012239 | CCAATCCTCATCTTTCTTGTTGGA | 58.988 | 41.667 | 0.00 | 0.00 | 36.55 | 3.53 |
328 | 384 | 5.655532 | CCAATCCTCATCTTTCTTGTTGGAT | 59.344 | 40.000 | 0.00 | 0.00 | 36.55 | 3.41 |
335 | 399 | 7.555554 | CCTCATCTTTCTTGTTGGATAGATTGT | 59.444 | 37.037 | 0.00 | 0.00 | 33.81 | 2.71 |
339 | 403 | 7.608153 | TCTTTCTTGTTGGATAGATTGTCGTA | 58.392 | 34.615 | 0.00 | 0.00 | 0.00 | 3.43 |
345 | 409 | 5.889853 | TGTTGGATAGATTGTCGTAGGTAGT | 59.110 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
346 | 410 | 6.183360 | TGTTGGATAGATTGTCGTAGGTAGTG | 60.183 | 42.308 | 0.00 | 0.00 | 0.00 | 2.74 |
352 | 416 | 6.525578 | AGATTGTCGTAGGTAGTGATTTCA | 57.474 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
360 | 424 | 6.323996 | TCGTAGGTAGTGATTTCATCTCCATT | 59.676 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
372 | 436 | 1.004758 | CTCCATTCCCTCCCCCTGA | 59.995 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
377 | 441 | 1.570501 | CATTCCCTCCCCCTGATTGAA | 59.429 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 |
378 | 442 | 1.766951 | TTCCCTCCCCCTGATTGAAA | 58.233 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
428 | 498 | 4.910913 | AGATAGATTCTTTTCCCCCTCTCC | 59.089 | 45.833 | 0.00 | 0.00 | 0.00 | 3.71 |
430 | 500 | 2.209758 | GATTCTTTTCCCCCTCTCCCT | 58.790 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
431 | 501 | 1.372501 | TTCTTTTCCCCCTCTCCCTG | 58.627 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
432 | 502 | 0.496382 | TCTTTTCCCCCTCTCCCTGA | 59.504 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
442 | 513 | 0.615850 | CTCTCCCTGAGTTGGTTCCC | 59.384 | 60.000 | 0.00 | 0.00 | 37.99 | 3.97 |
491 | 569 | 0.740737 | CATGAGCGGATTTTGGGTCC | 59.259 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
585 | 665 | 4.259952 | GGCTGGAAAGGCCCATAC | 57.740 | 61.111 | 0.00 | 0.00 | 43.49 | 2.39 |
631 | 713 | 3.060602 | GTGTTTCTCTTCTGTCGGGAAG | 58.939 | 50.000 | 7.16 | 7.16 | 42.72 | 3.46 |
642 | 724 | 1.254954 | GTCGGGAAGTAGTGTCAGGT | 58.745 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
654 | 736 | 2.774234 | AGTGTCAGGTAAGGATGATGGG | 59.226 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
655 | 737 | 2.505819 | GTGTCAGGTAAGGATGATGGGT | 59.494 | 50.000 | 0.00 | 0.00 | 0.00 | 4.51 |
663 | 745 | 6.270000 | CAGGTAAGGATGATGGGTACTCATTA | 59.730 | 42.308 | 10.22 | 6.11 | 33.56 | 1.90 |
719 | 802 | 5.163478 | GCTGCCATTCTTGTTTAATCAGGAT | 60.163 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
722 | 805 | 6.095860 | TGCCATTCTTGTTTAATCAGGATCAG | 59.904 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
726 | 809 | 5.994250 | TCTTGTTTAATCAGGATCAGGGAG | 58.006 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
727 | 810 | 4.778213 | TGTTTAATCAGGATCAGGGAGG | 57.222 | 45.455 | 0.00 | 0.00 | 0.00 | 4.30 |
817 | 901 | 4.036498 | GCCTTCTCTGAATCCACAATCATG | 59.964 | 45.833 | 0.00 | 0.00 | 0.00 | 3.07 |
827 | 911 | 7.988737 | TGAATCCACAATCATGTACTGAATTC | 58.011 | 34.615 | 0.00 | 0.00 | 37.82 | 2.17 |
866 | 950 | 6.349611 | CCATCCTGGTAAATGTTTCAGAGTTG | 60.350 | 42.308 | 0.00 | 0.00 | 31.35 | 3.16 |
868 | 952 | 5.763204 | TCCTGGTAAATGTTTCAGAGTTGTC | 59.237 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
883 | 967 | 2.428890 | AGTTGTCGATCACCTCCATCTC | 59.571 | 50.000 | 0.00 | 0.00 | 0.00 | 2.75 |
897 | 981 | 4.155644 | CCTCCATCTCTTCTTTTCTGCAAC | 59.844 | 45.833 | 0.00 | 0.00 | 0.00 | 4.17 |
909 | 993 | 0.746204 | TCTGCAACCACACAGCGAAA | 60.746 | 50.000 | 0.00 | 0.00 | 33.80 | 3.46 |
919 | 1003 | 5.754778 | ACCACACAGCGAAATTACTTTAAC | 58.245 | 37.500 | 0.00 | 0.00 | 0.00 | 2.01 |
922 | 1006 | 5.048991 | CACACAGCGAAATTACTTTAACCCT | 60.049 | 40.000 | 0.00 | 0.00 | 0.00 | 4.34 |
926 | 1010 | 4.395231 | AGCGAAATTACTTTAACCCTCTGC | 59.605 | 41.667 | 0.00 | 0.00 | 0.00 | 4.26 |
928 | 1012 | 4.698304 | CGAAATTACTTTAACCCTCTGCCA | 59.302 | 41.667 | 0.00 | 0.00 | 0.00 | 4.92 |
929 | 1013 | 5.357032 | CGAAATTACTTTAACCCTCTGCCAT | 59.643 | 40.000 | 0.00 | 0.00 | 0.00 | 4.40 |
930 | 1014 | 6.530019 | AAATTACTTTAACCCTCTGCCATG | 57.470 | 37.500 | 0.00 | 0.00 | 0.00 | 3.66 |
937 | 1021 | 0.035056 | ACCCTCTGCCATGTGTTAGC | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 3.09 |
938 | 1022 | 0.035152 | CCCTCTGCCATGTGTTAGCA | 60.035 | 55.000 | 0.00 | 0.00 | 34.79 | 3.49 |
1080 | 1167 | 2.125269 | GCCACGGCGTACATCCTT | 60.125 | 61.111 | 14.22 | 0.00 | 0.00 | 3.36 |
1123 | 1210 | 3.003230 | CCATAAAGGACGCCCCCA | 58.997 | 61.111 | 0.00 | 0.00 | 41.22 | 4.96 |
1218 | 1305 | 2.105128 | GCCTCGGTGACATCCTCG | 59.895 | 66.667 | 0.00 | 0.00 | 0.00 | 4.63 |
1221 | 1308 | 3.432051 | CTCGGTGACATCCTCGGGC | 62.432 | 68.421 | 0.00 | 0.00 | 0.00 | 6.13 |
1242 | 1329 | 1.521681 | CCGTCTCGATTTCCAGGCC | 60.522 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
1299 | 1386 | 2.797278 | GGAGATGATCCCGCCGTGT | 61.797 | 63.158 | 0.00 | 0.00 | 43.01 | 4.49 |
1343 | 1430 | 1.450312 | CTTGCCATGACCCGAGGAC | 60.450 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
1404 | 1491 | 1.398958 | GGCACTGCCCCACAAAAGAA | 61.399 | 55.000 | 9.13 | 0.00 | 44.06 | 2.52 |
1536 | 1623 | 1.448540 | CGAGAAGGCCGTGCAGAAT | 60.449 | 57.895 | 0.00 | 0.00 | 0.00 | 2.40 |
1558 | 1645 | 0.991920 | GATTCAGGTTGAGGGGGACA | 59.008 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1689 | 1776 | 0.839946 | ATACTGGATGTGGGGTGAGC | 59.160 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1705 | 1792 | 3.492011 | GGTGAGCTTGCTTGACAAATTTG | 59.508 | 43.478 | 16.67 | 16.67 | 37.96 | 2.32 |
2032 | 2121 | 7.592938 | TCAGATTTTTAGTTACATTGCACTGG | 58.407 | 34.615 | 9.06 | 0.00 | 0.00 | 4.00 |
2249 | 2342 | 0.673644 | TTGAGGACCTAGCAAAGCGC | 60.674 | 55.000 | 0.00 | 0.00 | 42.91 | 5.92 |
2264 | 2357 | 2.105466 | GCGCCTCTGCTGGAAGAAG | 61.105 | 63.158 | 0.00 | 0.00 | 42.87 | 2.85 |
2267 | 2360 | 0.676151 | GCCTCTGCTGGAAGAAGGTG | 60.676 | 60.000 | 0.00 | 0.00 | 41.31 | 4.00 |
2273 | 2366 | 2.303022 | CTGCTGGAAGAAGGTGGTAGAA | 59.697 | 50.000 | 0.00 | 0.00 | 35.25 | 2.10 |
2282 | 2375 | 6.149640 | GGAAGAAGGTGGTAGAAAAAGATGAC | 59.850 | 42.308 | 0.00 | 0.00 | 0.00 | 3.06 |
2288 | 2381 | 4.079253 | TGGTAGAAAAAGATGACCTTGCC | 58.921 | 43.478 | 0.00 | 0.00 | 34.79 | 4.52 |
2312 | 2405 | 3.737559 | TGGCAGAAACCTATCAACCAT | 57.262 | 42.857 | 0.00 | 0.00 | 0.00 | 3.55 |
2350 | 2443 | 2.087344 | GGAATGCCGACGAAACTCC | 58.913 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
2379 | 2472 | 1.596603 | CAACAGCAGTGATGTGGACA | 58.403 | 50.000 | 15.94 | 0.00 | 30.60 | 4.02 |
2422 | 2515 | 8.703604 | TGTTATGCTTTCTCTGAGTATTGTAC | 57.296 | 34.615 | 4.32 | 0.00 | 0.00 | 2.90 |
2442 | 2535 | 4.205323 | ACTTTTTGTACGCTTGCAGTAC | 57.795 | 40.909 | 15.35 | 15.35 | 43.34 | 2.73 |
2449 | 2542 | 1.442769 | ACGCTTGCAGTACCTCATTG | 58.557 | 50.000 | 0.00 | 0.00 | 0.00 | 2.82 |
2462 | 2555 | 3.162666 | ACCTCATTGTCTGTAGTTCCGA | 58.837 | 45.455 | 0.00 | 0.00 | 0.00 | 4.55 |
2465 | 2558 | 4.994852 | CCTCATTGTCTGTAGTTCCGAAAA | 59.005 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
2523 | 2617 | 6.564328 | CCTGGTTTGTTTAGCAAGATTATCC | 58.436 | 40.000 | 0.00 | 0.00 | 38.47 | 2.59 |
2542 | 2636 | 5.894298 | ATCCTTGTATGAACCTCATGCTA | 57.106 | 39.130 | 6.34 | 0.00 | 39.71 | 3.49 |
2543 | 2637 | 5.894298 | TCCTTGTATGAACCTCATGCTAT | 57.106 | 39.130 | 6.34 | 0.00 | 39.71 | 2.97 |
2626 | 2720 | 7.094205 | GGTTTCACTAACATCATTCTGAATGGT | 60.094 | 37.037 | 25.52 | 18.78 | 37.70 | 3.55 |
2642 | 2736 | 7.279615 | TCTGAATGGTGTCTTCTTAAGTGAAA | 58.720 | 34.615 | 1.63 | 0.00 | 0.00 | 2.69 |
2684 | 2778 | 7.338196 | TCTCTTGTGTCAGTTTTGGAAACATTA | 59.662 | 33.333 | 6.35 | 0.00 | 42.32 | 1.90 |
2727 | 2821 | 3.325870 | TGGCTCAGTTCACTTACAATCG | 58.674 | 45.455 | 0.00 | 0.00 | 0.00 | 3.34 |
2737 | 2831 | 8.922676 | CAGTTCACTTACAATCGTACAATAACT | 58.077 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2740 | 2834 | 7.529158 | TCACTTACAATCGTACAATAACTCGA | 58.471 | 34.615 | 0.00 | 0.00 | 36.77 | 4.04 |
2778 | 2872 | 4.462834 | AGCAGCACACTAGTACAGTCATAA | 59.537 | 41.667 | 0.00 | 0.00 | 34.26 | 1.90 |
2788 | 2882 | 9.239002 | CACTAGTACAGTCATAAATGCTTAGAC | 57.761 | 37.037 | 0.00 | 0.00 | 34.26 | 2.59 |
2790 | 2884 | 7.425224 | AGTACAGTCATAAATGCTTAGACCT | 57.575 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2791 | 2885 | 7.493367 | AGTACAGTCATAAATGCTTAGACCTC | 58.507 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
2792 | 2886 | 6.299805 | ACAGTCATAAATGCTTAGACCTCA | 57.700 | 37.500 | 0.00 | 0.00 | 0.00 | 3.86 |
2794 | 2888 | 6.820656 | ACAGTCATAAATGCTTAGACCTCAAG | 59.179 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
2824 | 2919 | 7.315142 | TCACAATGCATTCTCTGTTATTTTCC | 58.685 | 34.615 | 9.53 | 0.00 | 0.00 | 3.13 |
2836 | 2931 | 9.573166 | TCTCTGTTATTTTCCTGATCAGAAAAA | 57.427 | 29.630 | 20.35 | 20.35 | 32.55 | 1.94 |
2837 | 2932 | 9.617975 | CTCTGTTATTTTCCTGATCAGAAAAAC | 57.382 | 33.333 | 20.47 | 18.49 | 32.55 | 2.43 |
2838 | 2933 | 9.130661 | TCTGTTATTTTCCTGATCAGAAAAACA | 57.869 | 29.630 | 20.47 | 20.92 | 32.55 | 2.83 |
2922 | 3022 | 0.238553 | GTGCAAACCGAGGAAGAAGC | 59.761 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2982 | 3082 | 1.365699 | GCAGTTCCGCCGAGAATAAA | 58.634 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3031 | 3131 | 4.233789 | CTGAGAAGTTCGAAGAGGACAAG | 58.766 | 47.826 | 0.00 | 0.00 | 38.43 | 3.16 |
3367 | 3471 | 3.489416 | CGATTGTTTGAGTTCTGTCGTCA | 59.511 | 43.478 | 0.00 | 0.00 | 0.00 | 4.35 |
3372 | 3476 | 5.538118 | TGTTTGAGTTCTGTCGTCATGTAT | 58.462 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
3373 | 3477 | 5.989168 | TGTTTGAGTTCTGTCGTCATGTATT | 59.011 | 36.000 | 0.00 | 0.00 | 0.00 | 1.89 |
3380 | 3484 | 6.710744 | AGTTCTGTCGTCATGTATTCCTTTTT | 59.289 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
3405 | 3509 | 4.512571 | GCTCCAATTTCATGCTTGTGTTTT | 59.487 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
3438 | 3542 | 6.566197 | AAGGAAGTTCAGATTAAGCAAGTG | 57.434 | 37.500 | 5.01 | 0.00 | 0.00 | 3.16 |
3761 | 3922 | 1.546029 | TGTTCTATGTCGTCTGCTGCT | 59.454 | 47.619 | 0.00 | 0.00 | 0.00 | 4.24 |
3779 | 3940 | 6.572519 | TGCTGCTAAAGTTCAAACAGAAAAT | 58.427 | 32.000 | 0.00 | 0.00 | 38.13 | 1.82 |
3917 | 4166 | 0.031585 | GAGTGTGACACGGTGCTACA | 59.968 | 55.000 | 10.41 | 10.71 | 39.64 | 2.74 |
3918 | 4167 | 0.249322 | AGTGTGACACGGTGCTACAC | 60.249 | 55.000 | 27.33 | 27.33 | 39.64 | 2.90 |
3919 | 4168 | 1.299544 | TGTGACACGGTGCTACACG | 60.300 | 57.895 | 20.12 | 0.00 | 34.83 | 4.49 |
3920 | 4169 | 1.008194 | GTGACACGGTGCTACACGA | 60.008 | 57.895 | 8.30 | 0.00 | 34.83 | 4.35 |
3921 | 4170 | 0.388134 | GTGACACGGTGCTACACGAT | 60.388 | 55.000 | 8.30 | 0.00 | 34.83 | 3.73 |
3922 | 4171 | 0.388006 | TGACACGGTGCTACACGATG | 60.388 | 55.000 | 8.30 | 0.00 | 34.83 | 3.84 |
3923 | 4172 | 1.076533 | GACACGGTGCTACACGATGG | 61.077 | 60.000 | 8.30 | 0.00 | 34.83 | 3.51 |
3924 | 4173 | 1.080093 | CACGGTGCTACACGATGGT | 60.080 | 57.895 | 0.00 | 0.00 | 34.83 | 3.55 |
3925 | 4174 | 0.171679 | CACGGTGCTACACGATGGTA | 59.828 | 55.000 | 0.00 | 0.00 | 34.83 | 3.25 |
3926 | 4175 | 1.108776 | ACGGTGCTACACGATGGTAT | 58.891 | 50.000 | 0.00 | 0.00 | 34.83 | 2.73 |
3927 | 4176 | 1.479323 | ACGGTGCTACACGATGGTATT | 59.521 | 47.619 | 0.00 | 0.00 | 34.83 | 1.89 |
3928 | 4177 | 2.124903 | CGGTGCTACACGATGGTATTC | 58.875 | 52.381 | 0.00 | 0.00 | 34.83 | 1.75 |
3929 | 4178 | 2.480587 | CGGTGCTACACGATGGTATTCA | 60.481 | 50.000 | 0.00 | 0.00 | 34.83 | 2.57 |
3930 | 4179 | 3.123804 | GGTGCTACACGATGGTATTCAG | 58.876 | 50.000 | 0.00 | 0.00 | 34.83 | 3.02 |
3931 | 4180 | 2.540101 | GTGCTACACGATGGTATTCAGC | 59.460 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
3932 | 4181 | 2.167487 | TGCTACACGATGGTATTCAGCA | 59.833 | 45.455 | 0.00 | 0.00 | 36.41 | 4.41 |
3933 | 4182 | 3.194861 | GCTACACGATGGTATTCAGCAA | 58.805 | 45.455 | 0.00 | 0.00 | 35.40 | 3.91 |
3934 | 4183 | 3.001330 | GCTACACGATGGTATTCAGCAAC | 59.999 | 47.826 | 0.00 | 0.00 | 35.40 | 4.17 |
3935 | 4184 | 2.356135 | ACACGATGGTATTCAGCAACC | 58.644 | 47.619 | 0.00 | 0.00 | 35.40 | 3.77 |
3936 | 4185 | 1.327460 | CACGATGGTATTCAGCAACCG | 59.673 | 52.381 | 0.00 | 0.00 | 38.70 | 4.44 |
3937 | 4186 | 1.066430 | ACGATGGTATTCAGCAACCGT | 60.066 | 47.619 | 0.00 | 0.00 | 38.70 | 4.83 |
3938 | 4187 | 2.006888 | CGATGGTATTCAGCAACCGTT | 58.993 | 47.619 | 0.00 | 0.00 | 38.70 | 4.44 |
3939 | 4188 | 2.030457 | CGATGGTATTCAGCAACCGTTC | 59.970 | 50.000 | 0.00 | 0.00 | 38.70 | 3.95 |
3940 | 4189 | 1.816074 | TGGTATTCAGCAACCGTTCC | 58.184 | 50.000 | 0.00 | 0.00 | 38.70 | 3.62 |
3941 | 4190 | 1.072489 | TGGTATTCAGCAACCGTTCCA | 59.928 | 47.619 | 0.00 | 0.00 | 38.70 | 3.53 |
3942 | 4191 | 2.156098 | GGTATTCAGCAACCGTTCCAA | 58.844 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
3943 | 4192 | 2.161609 | GGTATTCAGCAACCGTTCCAAG | 59.838 | 50.000 | 0.00 | 0.00 | 0.00 | 3.61 |
3944 | 4193 | 2.270352 | ATTCAGCAACCGTTCCAAGA | 57.730 | 45.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3945 | 4194 | 1.593196 | TTCAGCAACCGTTCCAAGAG | 58.407 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
3946 | 4195 | 0.250295 | TCAGCAACCGTTCCAAGAGG | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3947 | 4196 | 0.250295 | CAGCAACCGTTCCAAGAGGA | 60.250 | 55.000 | 0.00 | 0.00 | 43.93 | 3.71 |
3948 | 4197 | 0.693049 | AGCAACCGTTCCAAGAGGAT | 59.307 | 50.000 | 0.00 | 0.00 | 45.26 | 3.24 |
3949 | 4198 | 1.906574 | AGCAACCGTTCCAAGAGGATA | 59.093 | 47.619 | 0.00 | 0.00 | 45.26 | 2.59 |
3950 | 4199 | 2.505819 | AGCAACCGTTCCAAGAGGATAT | 59.494 | 45.455 | 0.00 | 0.00 | 45.26 | 1.63 |
3951 | 4200 | 3.054361 | AGCAACCGTTCCAAGAGGATATT | 60.054 | 43.478 | 0.00 | 0.00 | 45.26 | 1.28 |
3952 | 4201 | 3.312697 | GCAACCGTTCCAAGAGGATATTC | 59.687 | 47.826 | 0.00 | 0.00 | 45.26 | 1.75 |
3976 | 5101 | 7.450074 | TCACTTATAGTTTTGAGAAAGCTGGA | 58.550 | 34.615 | 0.00 | 0.00 | 33.77 | 3.86 |
4059 | 5191 | 1.001378 | CAAGAAAGGGCAGACCAAACG | 60.001 | 52.381 | 0.00 | 0.00 | 43.89 | 3.60 |
4072 | 5204 | 3.499918 | AGACCAAACGATCTTTTGAGCAG | 59.500 | 43.478 | 22.43 | 10.54 | 38.54 | 4.24 |
4090 | 5222 | 2.354259 | CAGAGGTGCAGAATCCAAGTC | 58.646 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
4165 | 5297 | 9.045223 | CGATTCATGAACCAAATCTGAACTATA | 57.955 | 33.333 | 11.07 | 0.00 | 0.00 | 1.31 |
4178 | 5313 | 9.823647 | AAATCTGAACTATATTCGACTGAATGT | 57.176 | 29.630 | 0.93 | 0.00 | 44.46 | 2.71 |
4189 | 5332 | 5.095691 | TCGACTGAATGTTTCTCTTTTGC | 57.904 | 39.130 | 0.00 | 0.00 | 0.00 | 3.68 |
4223 | 5522 | 1.203440 | ACTAAAAGAGGAGGCCCAGGA | 60.203 | 52.381 | 0.00 | 0.00 | 33.88 | 3.86 |
4238 | 5537 | 5.134339 | AGGCCCAGGAAGAATGTATGATAAA | 59.866 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
4259 | 5558 | 1.336517 | CCAAGCTGAATGTGCTGGTTG | 60.337 | 52.381 | 0.00 | 0.00 | 41.03 | 3.77 |
4261 | 5560 | 1.443194 | GCTGAATGTGCTGGTTGCG | 60.443 | 57.895 | 0.00 | 0.00 | 46.63 | 4.85 |
4323 | 5624 | 6.317391 | CAGGAAAGAGAACAAGACTGAACTTT | 59.683 | 38.462 | 0.00 | 0.00 | 0.00 | 2.66 |
4340 | 5641 | 4.918810 | ACTTTGTGTTGGGAAATGACTC | 57.081 | 40.909 | 0.00 | 0.00 | 0.00 | 3.36 |
4343 | 5644 | 5.363580 | ACTTTGTGTTGGGAAATGACTCAAT | 59.636 | 36.000 | 0.00 | 0.00 | 32.72 | 2.57 |
4344 | 5645 | 5.452078 | TTGTGTTGGGAAATGACTCAATC | 57.548 | 39.130 | 0.00 | 0.00 | 32.72 | 2.67 |
4346 | 5647 | 5.139727 | TGTGTTGGGAAATGACTCAATCTT | 58.860 | 37.500 | 0.00 | 0.00 | 32.72 | 2.40 |
4347 | 5648 | 5.241506 | TGTGTTGGGAAATGACTCAATCTTC | 59.758 | 40.000 | 0.00 | 0.00 | 32.72 | 2.87 |
4348 | 5649 | 5.241506 | GTGTTGGGAAATGACTCAATCTTCA | 59.758 | 40.000 | 0.00 | 0.00 | 32.72 | 3.02 |
4359 | 5660 | 6.290605 | TGACTCAATCTTCAACAGTTCATCA | 58.709 | 36.000 | 0.00 | 0.00 | 0.00 | 3.07 |
4365 | 5666 | 7.333672 | TCAATCTTCAACAGTTCATCATCTGAG | 59.666 | 37.037 | 0.00 | 0.00 | 34.68 | 3.35 |
4369 | 5670 | 5.476614 | TCAACAGTTCATCATCTGAGTGAG | 58.523 | 41.667 | 0.00 | 0.00 | 34.68 | 3.51 |
4375 | 5676 | 6.040729 | CAGTTCATCATCTGAGTGAGACCTAT | 59.959 | 42.308 | 0.00 | 0.00 | 34.68 | 2.57 |
4386 | 5687 | 8.278639 | TCTGAGTGAGACCTATTAGAAGAAGAT | 58.721 | 37.037 | 0.00 | 0.00 | 0.00 | 2.40 |
4389 | 5690 | 9.131791 | GAGTGAGACCTATTAGAAGAAGATTCT | 57.868 | 37.037 | 0.00 | 0.00 | 39.74 | 2.40 |
4451 | 5752 | 9.491675 | GCATGAAGAGTATCACTACTACTACTA | 57.508 | 37.037 | 0.00 | 0.00 | 38.33 | 1.82 |
4487 | 5788 | 9.846248 | TTAGAAACACTACTACTACGAAAATCC | 57.154 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
4488 | 5789 | 7.025963 | AGAAACACTACTACTACGAAAATCCG | 58.974 | 38.462 | 0.00 | 0.00 | 0.00 | 4.18 |
4489 | 5790 | 4.666237 | ACACTACTACTACGAAAATCCGC | 58.334 | 43.478 | 0.00 | 0.00 | 0.00 | 5.54 |
4490 | 5791 | 4.156556 | ACACTACTACTACGAAAATCCGCA | 59.843 | 41.667 | 0.00 | 0.00 | 0.00 | 5.69 |
4491 | 5792 | 5.163581 | ACACTACTACTACGAAAATCCGCAT | 60.164 | 40.000 | 0.00 | 0.00 | 0.00 | 4.73 |
4492 | 5793 | 5.173312 | CACTACTACTACGAAAATCCGCATG | 59.827 | 44.000 | 0.00 | 0.00 | 0.00 | 4.06 |
4493 | 5794 | 3.454375 | ACTACTACGAAAATCCGCATGG | 58.546 | 45.455 | 0.00 | 0.00 | 0.00 | 3.66 |
4494 | 5795 | 1.663695 | ACTACGAAAATCCGCATGGG | 58.336 | 50.000 | 2.06 | 2.06 | 35.24 | 4.00 |
4495 | 5796 | 0.307760 | CTACGAAAATCCGCATGGGC | 59.692 | 55.000 | 3.80 | 0.00 | 35.24 | 5.36 |
4496 | 5797 | 0.107410 | TACGAAAATCCGCATGGGCT | 60.107 | 50.000 | 3.80 | 0.00 | 38.10 | 5.19 |
4497 | 5798 | 1.356624 | CGAAAATCCGCATGGGCTC | 59.643 | 57.895 | 3.80 | 0.00 | 38.10 | 4.70 |
4498 | 5799 | 1.375853 | CGAAAATCCGCATGGGCTCA | 61.376 | 55.000 | 3.80 | 0.00 | 38.10 | 4.26 |
4499 | 5800 | 0.383231 | GAAAATCCGCATGGGCTCAG | 59.617 | 55.000 | 3.80 | 0.00 | 38.10 | 3.35 |
4500 | 5801 | 0.034186 | AAAATCCGCATGGGCTCAGA | 60.034 | 50.000 | 3.80 | 0.00 | 38.10 | 3.27 |
4501 | 5802 | 0.184451 | AAATCCGCATGGGCTCAGAT | 59.816 | 50.000 | 3.80 | 0.00 | 38.10 | 2.90 |
4502 | 5803 | 0.536687 | AATCCGCATGGGCTCAGATG | 60.537 | 55.000 | 3.80 | 0.00 | 38.10 | 2.90 |
4503 | 5804 | 3.285215 | CCGCATGGGCTCAGATGC | 61.285 | 66.667 | 3.80 | 1.84 | 41.37 | 3.91 |
4504 | 5805 | 2.203167 | CGCATGGGCTCAGATGCT | 60.203 | 61.111 | 10.33 | 0.00 | 42.40 | 3.79 |
4505 | 5806 | 2.252346 | CGCATGGGCTCAGATGCTC | 61.252 | 63.158 | 10.33 | 0.00 | 42.40 | 4.26 |
4506 | 5807 | 1.897615 | GCATGGGCTCAGATGCTCC | 60.898 | 63.158 | 4.86 | 0.00 | 41.52 | 4.70 |
4507 | 5808 | 1.228184 | CATGGGCTCAGATGCTCCC | 60.228 | 63.158 | 0.00 | 0.00 | 39.22 | 4.30 |
4508 | 5809 | 2.815945 | ATGGGCTCAGATGCTCCCG | 61.816 | 63.158 | 0.00 | 0.00 | 41.65 | 5.14 |
4509 | 5810 | 4.925861 | GGGCTCAGATGCTCCCGC | 62.926 | 72.222 | 0.00 | 0.00 | 0.00 | 6.13 |
4510 | 5811 | 3.859414 | GGCTCAGATGCTCCCGCT | 61.859 | 66.667 | 0.00 | 0.00 | 36.97 | 5.52 |
4511 | 5812 | 2.188994 | GCTCAGATGCTCCCGCTT | 59.811 | 61.111 | 0.00 | 0.00 | 36.97 | 4.68 |
4512 | 5813 | 1.443407 | GCTCAGATGCTCCCGCTTA | 59.557 | 57.895 | 0.00 | 0.00 | 36.97 | 3.09 |
4513 | 5814 | 0.599728 | GCTCAGATGCTCCCGCTTAG | 60.600 | 60.000 | 0.00 | 0.00 | 36.97 | 2.18 |
4514 | 5815 | 1.035923 | CTCAGATGCTCCCGCTTAGA | 58.964 | 55.000 | 0.00 | 0.00 | 36.97 | 2.10 |
4525 | 5826 | 1.026182 | CCGCTTAGAATGGCAGCACA | 61.026 | 55.000 | 0.00 | 0.00 | 32.71 | 4.57 |
4526 | 5827 | 0.376152 | CGCTTAGAATGGCAGCACAG | 59.624 | 55.000 | 0.00 | 0.00 | 32.71 | 3.66 |
4530 | 5831 | 1.908344 | TAGAATGGCAGCACAGCAAA | 58.092 | 45.000 | 0.00 | 0.00 | 35.83 | 3.68 |
4536 | 5837 | 3.235157 | TGGCAGCACAGCAAAATTATC | 57.765 | 42.857 | 0.00 | 0.00 | 35.83 | 1.75 |
4540 | 5841 | 3.173599 | CAGCACAGCAAAATTATCCACG | 58.826 | 45.455 | 0.00 | 0.00 | 0.00 | 4.94 |
4544 | 5845 | 3.364621 | CACAGCAAAATTATCCACGCAAC | 59.635 | 43.478 | 0.00 | 0.00 | 0.00 | 4.17 |
4545 | 5846 | 3.255642 | ACAGCAAAATTATCCACGCAACT | 59.744 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
4546 | 5847 | 3.853671 | CAGCAAAATTATCCACGCAACTC | 59.146 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
4547 | 5848 | 3.505680 | AGCAAAATTATCCACGCAACTCA | 59.494 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
4549 | 5850 | 4.500477 | GCAAAATTATCCACGCAACTCATC | 59.500 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
4550 | 5851 | 5.639757 | CAAAATTATCCACGCAACTCATCA | 58.360 | 37.500 | 0.00 | 0.00 | 0.00 | 3.07 |
4552 | 5853 | 3.610040 | TTATCCACGCAACTCATCAGT | 57.390 | 42.857 | 0.00 | 0.00 | 0.00 | 3.41 |
4553 | 5854 | 4.729227 | TTATCCACGCAACTCATCAGTA | 57.271 | 40.909 | 0.00 | 0.00 | 30.14 | 2.74 |
4562 | 5864 | 4.409570 | GCAACTCATCAGTACAATTGCAG | 58.590 | 43.478 | 5.05 | 0.00 | 33.33 | 4.41 |
4566 | 5868 | 7.310664 | CAACTCATCAGTACAATTGCAGATTT | 58.689 | 34.615 | 5.05 | 0.00 | 30.14 | 2.17 |
4567 | 5869 | 7.081526 | ACTCATCAGTACAATTGCAGATTTC | 57.918 | 36.000 | 5.05 | 0.00 | 0.00 | 2.17 |
4569 | 5871 | 5.945191 | TCATCAGTACAATTGCAGATTTCCA | 59.055 | 36.000 | 5.05 | 0.00 | 0.00 | 3.53 |
4584 | 5886 | 9.625747 | TGCAGATTTCCATATAATTAACAGTCA | 57.374 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
4619 | 5921 | 4.439305 | ACATTTCATGTTCCATCAACCG | 57.561 | 40.909 | 0.00 | 0.00 | 41.63 | 4.44 |
4621 | 5923 | 4.522405 | ACATTTCATGTTCCATCAACCGAA | 59.478 | 37.500 | 0.00 | 0.00 | 41.63 | 4.30 |
4622 | 5924 | 5.185635 | ACATTTCATGTTCCATCAACCGAAT | 59.814 | 36.000 | 0.00 | 0.00 | 41.63 | 3.34 |
4623 | 5925 | 6.376864 | ACATTTCATGTTCCATCAACCGAATA | 59.623 | 34.615 | 0.00 | 0.00 | 41.63 | 1.75 |
4624 | 5926 | 5.811399 | TTCATGTTCCATCAACCGAATAC | 57.189 | 39.130 | 0.00 | 0.00 | 33.51 | 1.89 |
4625 | 5927 | 4.837972 | TCATGTTCCATCAACCGAATACA | 58.162 | 39.130 | 0.00 | 0.00 | 33.51 | 2.29 |
4628 | 5930 | 5.621197 | TGTTCCATCAACCGAATACAAAG | 57.379 | 39.130 | 0.00 | 0.00 | 33.51 | 2.77 |
4630 | 5932 | 6.231951 | TGTTCCATCAACCGAATACAAAGTA | 58.768 | 36.000 | 0.00 | 0.00 | 33.51 | 2.24 |
4631 | 5933 | 6.711194 | TGTTCCATCAACCGAATACAAAGTAA | 59.289 | 34.615 | 0.00 | 0.00 | 33.51 | 2.24 |
4632 | 5934 | 6.978343 | TCCATCAACCGAATACAAAGTAAG | 57.022 | 37.500 | 0.00 | 0.00 | 0.00 | 2.34 |
4633 | 5935 | 5.353123 | TCCATCAACCGAATACAAAGTAAGC | 59.647 | 40.000 | 0.00 | 0.00 | 0.00 | 3.09 |
4634 | 5936 | 5.354234 | CCATCAACCGAATACAAAGTAAGCT | 59.646 | 40.000 | 0.00 | 0.00 | 0.00 | 3.74 |
4657 | 7005 | 9.407380 | AGCTTGGTTTATATATTGTTCATCACA | 57.593 | 29.630 | 0.00 | 0.00 | 0.00 | 3.58 |
4658 | 7006 | 9.450807 | GCTTGGTTTATATATTGTTCATCACAC | 57.549 | 33.333 | 0.00 | 0.00 | 33.98 | 3.82 |
4659 | 7007 | 9.650371 | CTTGGTTTATATATTGTTCATCACACG | 57.350 | 33.333 | 0.00 | 0.00 | 33.98 | 4.49 |
4660 | 7008 | 7.635423 | TGGTTTATATATTGTTCATCACACGC | 58.365 | 34.615 | 0.00 | 0.00 | 33.98 | 5.34 |
4661 | 7009 | 7.497579 | TGGTTTATATATTGTTCATCACACGCT | 59.502 | 33.333 | 0.00 | 0.00 | 33.98 | 5.07 |
4662 | 7010 | 8.009974 | GGTTTATATATTGTTCATCACACGCTC | 58.990 | 37.037 | 0.00 | 0.00 | 33.98 | 5.03 |
4663 | 7011 | 8.547894 | GTTTATATATTGTTCATCACACGCTCA | 58.452 | 33.333 | 0.00 | 0.00 | 33.98 | 4.26 |
4664 | 7012 | 4.864916 | ATATTGTTCATCACACGCTCAC | 57.135 | 40.909 | 0.00 | 0.00 | 33.98 | 3.51 |
4665 | 7013 | 1.225855 | TTGTTCATCACACGCTCACC | 58.774 | 50.000 | 0.00 | 0.00 | 33.98 | 4.02 |
4666 | 7014 | 0.105778 | TGTTCATCACACGCTCACCA | 59.894 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
4667 | 7015 | 0.512952 | GTTCATCACACGCTCACCAC | 59.487 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
4668 | 7016 | 0.943835 | TTCATCACACGCTCACCACG | 60.944 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
4669 | 7017 | 2.738521 | ATCACACGCTCACCACGC | 60.739 | 61.111 | 0.00 | 0.00 | 0.00 | 5.34 |
4670 | 7018 | 3.513768 | ATCACACGCTCACCACGCA | 62.514 | 57.895 | 0.00 | 0.00 | 0.00 | 5.24 |
4671 | 7019 | 3.705638 | CACACGCTCACCACGCAG | 61.706 | 66.667 | 0.00 | 0.00 | 0.00 | 5.18 |
4672 | 7020 | 4.969196 | ACACGCTCACCACGCAGG | 62.969 | 66.667 | 0.00 | 0.00 | 45.67 | 4.85 |
4673 | 7021 | 4.662961 | CACGCTCACCACGCAGGA | 62.663 | 66.667 | 0.93 | 0.00 | 41.22 | 3.86 |
4674 | 7022 | 3.695606 | ACGCTCACCACGCAGGAT | 61.696 | 61.111 | 0.93 | 0.00 | 41.22 | 3.24 |
4675 | 7023 | 2.434884 | CGCTCACCACGCAGGATT | 60.435 | 61.111 | 0.93 | 0.00 | 41.22 | 3.01 |
4676 | 7024 | 2.034879 | CGCTCACCACGCAGGATTT | 61.035 | 57.895 | 0.93 | 0.00 | 41.22 | 2.17 |
4678 | 7026 | 0.727398 | GCTCACCACGCAGGATTTAC | 59.273 | 55.000 | 0.93 | 0.00 | 41.22 | 2.01 |
4679 | 7027 | 1.943968 | GCTCACCACGCAGGATTTACA | 60.944 | 52.381 | 0.93 | 0.00 | 41.22 | 2.41 |
4680 | 7028 | 2.422597 | CTCACCACGCAGGATTTACAA | 58.577 | 47.619 | 0.93 | 0.00 | 41.22 | 2.41 |
4681 | 7029 | 2.811431 | CTCACCACGCAGGATTTACAAA | 59.189 | 45.455 | 0.93 | 0.00 | 41.22 | 2.83 |
4682 | 7030 | 3.417101 | TCACCACGCAGGATTTACAAAT | 58.583 | 40.909 | 0.93 | 0.00 | 41.22 | 2.32 |
4687 | 7035 | 3.016736 | ACGCAGGATTTACAAATCTGGG | 58.983 | 45.455 | 12.99 | 16.31 | 43.33 | 4.45 |
4689 | 7037 | 3.443681 | CGCAGGATTTACAAATCTGGGTT | 59.556 | 43.478 | 12.99 | 0.00 | 43.33 | 4.11 |
4690 | 7038 | 4.675146 | CGCAGGATTTACAAATCTGGGTTG | 60.675 | 45.833 | 12.99 | 6.86 | 43.33 | 3.77 |
4691 | 7039 | 4.462483 | GCAGGATTTACAAATCTGGGTTGA | 59.538 | 41.667 | 12.99 | 0.00 | 43.33 | 3.18 |
4692 | 7040 | 5.127682 | GCAGGATTTACAAATCTGGGTTGAT | 59.872 | 40.000 | 12.99 | 0.00 | 43.33 | 2.57 |
4693 | 7041 | 6.567050 | CAGGATTTACAAATCTGGGTTGATG | 58.433 | 40.000 | 12.99 | 0.00 | 43.33 | 3.07 |
4695 | 7043 | 5.105392 | GGATTTACAAATCTGGGTTGATGCA | 60.105 | 40.000 | 12.99 | 0.00 | 43.33 | 3.96 |
4696 | 7044 | 4.782019 | TTACAAATCTGGGTTGATGCAC | 57.218 | 40.909 | 0.00 | 0.00 | 0.00 | 4.57 |
4697 | 7045 | 2.596346 | ACAAATCTGGGTTGATGCACA | 58.404 | 42.857 | 0.00 | 0.00 | 0.00 | 4.57 |
4703 | 7051 | 3.443045 | GGTTGATGCACAGCCCGG | 61.443 | 66.667 | 9.85 | 0.00 | 42.79 | 5.73 |
4704 | 7052 | 4.120331 | GTTGATGCACAGCCCGGC | 62.120 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
4709 | 7057 | 4.027173 | TGCACAGCCCGGCATACA | 62.027 | 61.111 | 13.15 | 1.01 | 34.58 | 2.29 |
4710 | 7058 | 3.508840 | GCACAGCCCGGCATACAC | 61.509 | 66.667 | 13.15 | 0.00 | 0.00 | 2.90 |
4712 | 7060 | 1.673993 | CACAGCCCGGCATACACAA | 60.674 | 57.895 | 13.15 | 0.00 | 0.00 | 3.33 |
4718 | 7066 | 1.181786 | CCCGGCATACACAACCATTT | 58.818 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
4719 | 7067 | 1.548269 | CCCGGCATACACAACCATTTT | 59.452 | 47.619 | 0.00 | 0.00 | 0.00 | 1.82 |
4721 | 7069 | 3.383185 | CCCGGCATACACAACCATTTTAT | 59.617 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
23 | 29 | 7.882179 | ACCAAATCTAGTAAAACCATGTGTTC | 58.118 | 34.615 | 0.00 | 0.00 | 35.67 | 3.18 |
136 | 156 | 3.878519 | GACGGACGAGGCGAGGAG | 61.879 | 72.222 | 0.00 | 0.00 | 0.00 | 3.69 |
199 | 219 | 3.447950 | GTTACCTTACCTCTTCCCCTGA | 58.552 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
233 | 289 | 2.640302 | GGAGAGTGCGAGTGAGCCA | 61.640 | 63.158 | 0.00 | 0.00 | 36.02 | 4.75 |
234 | 290 | 2.183046 | GGAGAGTGCGAGTGAGCC | 59.817 | 66.667 | 0.00 | 0.00 | 36.02 | 4.70 |
298 | 354 | 3.053320 | AGAAAGATGAGGATTGGGTTCCC | 60.053 | 47.826 | 0.12 | 0.12 | 36.35 | 3.97 |
310 | 366 | 8.503458 | ACAATCTATCCAACAAGAAAGATGAG | 57.497 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
327 | 383 | 8.234136 | TGAAATCACTACCTACGACAATCTAT | 57.766 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
328 | 384 | 7.634671 | TGAAATCACTACCTACGACAATCTA | 57.365 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
346 | 410 | 3.499382 | GGGGAGGGAATGGAGATGAAATC | 60.499 | 52.174 | 0.00 | 0.00 | 46.04 | 2.17 |
352 | 416 | 0.402566 | CAGGGGGAGGGAATGGAGAT | 60.403 | 60.000 | 0.00 | 0.00 | 0.00 | 2.75 |
360 | 424 | 1.766951 | TTTTCAATCAGGGGGAGGGA | 58.233 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
377 | 441 | 3.559655 | GCGTGCAAAAATCCTTCCTTTTT | 59.440 | 39.130 | 0.00 | 0.00 | 36.50 | 1.94 |
378 | 442 | 3.130633 | GCGTGCAAAAATCCTTCCTTTT | 58.869 | 40.909 | 0.00 | 0.00 | 0.00 | 2.27 |
491 | 569 | 2.472695 | TCACTGATTTTGGGAGTCGG | 57.527 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
631 | 713 | 4.202264 | CCCATCATCCTTACCTGACACTAC | 60.202 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
642 | 724 | 5.843969 | TGCTAATGAGTACCCATCATCCTTA | 59.156 | 40.000 | 0.00 | 0.00 | 36.38 | 2.69 |
654 | 736 | 3.063180 | CACTTGCTGCTGCTAATGAGTAC | 59.937 | 47.826 | 17.00 | 0.00 | 40.48 | 2.73 |
655 | 737 | 3.264947 | CACTTGCTGCTGCTAATGAGTA | 58.735 | 45.455 | 17.00 | 0.00 | 40.48 | 2.59 |
727 | 810 | 1.307430 | AAGAAGCTCTCCCTCCCCC | 60.307 | 63.158 | 0.00 | 0.00 | 0.00 | 5.40 |
734 | 817 | 0.539518 | GGGGTCAGAAGAAGCTCTCC | 59.460 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
866 | 950 | 2.955660 | AGAAGAGATGGAGGTGATCGAC | 59.044 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
868 | 952 | 4.399004 | AAAGAAGAGATGGAGGTGATCG | 57.601 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
883 | 967 | 3.699067 | CTGTGTGGTTGCAGAAAAGAAG | 58.301 | 45.455 | 0.00 | 0.00 | 34.87 | 2.85 |
897 | 981 | 5.151389 | GGTTAAAGTAATTTCGCTGTGTGG | 58.849 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
909 | 993 | 4.949856 | CACATGGCAGAGGGTTAAAGTAAT | 59.050 | 41.667 | 0.00 | 0.00 | 0.00 | 1.89 |
919 | 1003 | 0.035152 | TGCTAACACATGGCAGAGGG | 60.035 | 55.000 | 0.00 | 0.00 | 41.05 | 4.30 |
937 | 1021 | 4.313282 | CACATATGGATGGAGCAGTAGTG | 58.687 | 47.826 | 7.80 | 0.00 | 37.39 | 2.74 |
938 | 1022 | 3.244353 | GCACATATGGATGGAGCAGTAGT | 60.244 | 47.826 | 7.80 | 0.00 | 37.83 | 2.73 |
984 | 1071 | 1.819632 | CATCCCGCCCTGTTACTGC | 60.820 | 63.158 | 0.00 | 0.00 | 0.00 | 4.40 |
1197 | 1284 | 2.579787 | GATGTCACCGAGGCGACG | 60.580 | 66.667 | 5.90 | 0.00 | 34.78 | 5.12 |
1203 | 1290 | 2.808315 | CCCGAGGATGTCACCGAG | 59.192 | 66.667 | 0.00 | 0.00 | 34.73 | 4.63 |
1218 | 1305 | 4.832608 | AAATCGAGACGGGCGCCC | 62.833 | 66.667 | 36.69 | 36.69 | 0.00 | 6.13 |
1221 | 1308 | 1.878522 | CTGGAAATCGAGACGGGCG | 60.879 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
1230 | 1317 | 2.046285 | GTGGTGGGCCTGGAAATCG | 61.046 | 63.158 | 4.53 | 0.00 | 35.27 | 3.34 |
1271 | 1358 | 2.355445 | GATCATCTCCGTCGCCAGCA | 62.355 | 60.000 | 0.00 | 0.00 | 0.00 | 4.41 |
1299 | 1386 | 1.248486 | ACTCGCTGTACTTGAGCTGA | 58.752 | 50.000 | 0.00 | 0.00 | 34.03 | 4.26 |
1323 | 1410 | 2.124570 | CTCGGGTCATGGCAAGGG | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 3.95 |
1326 | 1413 | 2.668632 | GTCCTCGGGTCATGGCAA | 59.331 | 61.111 | 0.00 | 0.00 | 0.00 | 4.52 |
1404 | 1491 | 1.698506 | TCAGGCACCGGAACAATTTT | 58.301 | 45.000 | 9.46 | 0.00 | 0.00 | 1.82 |
1440 | 1527 | 3.528532 | CCACGTGAAGGGGTTCTTATAC | 58.471 | 50.000 | 19.30 | 0.00 | 39.08 | 1.47 |
1536 | 1623 | 0.704076 | CCCCCTCAACCTGAATCCAA | 59.296 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1650 | 1737 | 4.761235 | ATCAAGTGCAGTTCTGATGTTG | 57.239 | 40.909 | 3.08 | 3.72 | 0.00 | 3.33 |
2249 | 2342 | 0.035630 | CCACCTTCTTCCAGCAGAGG | 60.036 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2264 | 2357 | 4.082733 | GCAAGGTCATCTTTTTCTACCACC | 60.083 | 45.833 | 0.00 | 0.00 | 32.41 | 4.61 |
2267 | 2360 | 3.127030 | CGGCAAGGTCATCTTTTTCTACC | 59.873 | 47.826 | 0.00 | 0.00 | 32.41 | 3.18 |
2273 | 2366 | 3.016736 | CCATACGGCAAGGTCATCTTTT | 58.983 | 45.455 | 0.00 | 0.00 | 32.41 | 2.27 |
2288 | 2381 | 3.560068 | GGTTGATAGGTTTCTGCCATACG | 59.440 | 47.826 | 0.00 | 0.00 | 0.00 | 3.06 |
2300 | 2393 | 4.444876 | GCACACTCCATATGGTTGATAGGT | 60.445 | 45.833 | 24.38 | 11.89 | 36.34 | 3.08 |
2312 | 2405 | 6.413783 | TTCCGATTATTAGCACACTCCATA | 57.586 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
2379 | 2472 | 6.127897 | GCATAACAGAAATCTTACCAAGCAGT | 60.128 | 38.462 | 0.00 | 0.00 | 0.00 | 4.40 |
2422 | 2515 | 3.250040 | AGGTACTGCAAGCGTACAAAAAG | 59.750 | 43.478 | 20.20 | 1.43 | 39.11 | 2.27 |
2442 | 2535 | 3.868757 | TCGGAACTACAGACAATGAGG | 57.131 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
2465 | 2558 | 4.520492 | CAGAACAGCCAGAAATACAGGTTT | 59.480 | 41.667 | 0.00 | 0.00 | 0.00 | 3.27 |
2469 | 2562 | 5.947228 | TTTCAGAACAGCCAGAAATACAG | 57.053 | 39.130 | 0.00 | 0.00 | 0.00 | 2.74 |
2523 | 2617 | 9.276590 | TGATTTATAGCATGAGGTTCATACAAG | 57.723 | 33.333 | 0.00 | 0.00 | 34.28 | 3.16 |
2592 | 2686 | 9.774742 | GAATGATGTTAGTGAAACCTGATAAAC | 57.225 | 33.333 | 0.00 | 0.00 | 37.80 | 2.01 |
2597 | 2691 | 6.768483 | TCAGAATGATGTTAGTGAAACCTGA | 58.232 | 36.000 | 0.00 | 0.00 | 42.56 | 3.86 |
2606 | 2700 | 6.715280 | AGACACCATTCAGAATGATGTTAGT | 58.285 | 36.000 | 22.12 | 9.32 | 45.60 | 2.24 |
2651 | 2745 | 7.226720 | TCCAAAACTGACACAAGAGATAAACTC | 59.773 | 37.037 | 0.00 | 0.00 | 45.22 | 3.01 |
2661 | 2755 | 9.180678 | GTATAATGTTTCCAAAACTGACACAAG | 57.819 | 33.333 | 4.40 | 0.00 | 0.00 | 3.16 |
2663 | 2757 | 8.226819 | TGTATAATGTTTCCAAAACTGACACA | 57.773 | 30.769 | 4.40 | 0.00 | 0.00 | 3.72 |
2664 | 2758 | 9.691362 | ATTGTATAATGTTTCCAAAACTGACAC | 57.309 | 29.630 | 4.40 | 0.00 | 0.00 | 3.67 |
2684 | 2778 | 7.946776 | AGCCATAAGCCAGAGAAAATATTGTAT | 59.053 | 33.333 | 0.00 | 0.00 | 45.47 | 2.29 |
2691 | 2785 | 4.205587 | CTGAGCCATAAGCCAGAGAAAAT | 58.794 | 43.478 | 0.00 | 0.00 | 45.47 | 1.82 |
2696 | 2790 | 2.093288 | TGAACTGAGCCATAAGCCAGAG | 60.093 | 50.000 | 9.23 | 0.00 | 45.47 | 3.35 |
2727 | 2821 | 6.880822 | TGCTACAATGTCGAGTTATTGTAC | 57.119 | 37.500 | 18.49 | 16.15 | 43.54 | 2.90 |
2737 | 2831 | 2.232696 | TGCTAGGTTGCTACAATGTCGA | 59.767 | 45.455 | 0.00 | 0.00 | 0.00 | 4.20 |
2740 | 2834 | 2.290260 | TGCTGCTAGGTTGCTACAATGT | 60.290 | 45.455 | 0.00 | 0.00 | 0.00 | 2.71 |
2778 | 2872 | 1.635487 | TGGCCTTGAGGTCTAAGCATT | 59.365 | 47.619 | 3.32 | 0.00 | 41.34 | 3.56 |
2788 | 2882 | 0.458669 | GCATTGTGATGGCCTTGAGG | 59.541 | 55.000 | 3.32 | 0.00 | 33.72 | 3.86 |
2790 | 2884 | 1.855295 | ATGCATTGTGATGGCCTTGA | 58.145 | 45.000 | 3.32 | 0.00 | 33.72 | 3.02 |
2791 | 2885 | 2.167693 | AGAATGCATTGTGATGGCCTTG | 59.832 | 45.455 | 18.59 | 0.00 | 33.72 | 3.61 |
2792 | 2886 | 2.429610 | GAGAATGCATTGTGATGGCCTT | 59.570 | 45.455 | 18.59 | 0.00 | 33.72 | 4.35 |
2794 | 2888 | 2.029623 | AGAGAATGCATTGTGATGGCC | 58.970 | 47.619 | 18.59 | 0.00 | 33.72 | 5.36 |
2824 | 2919 | 6.690098 | CAGTCAGTTTGTGTTTTTCTGATCAG | 59.310 | 38.462 | 17.07 | 17.07 | 37.46 | 2.90 |
2838 | 2933 | 2.356135 | GTGGTCACACAGTCAGTTTGT | 58.644 | 47.619 | 0.00 | 0.00 | 46.90 | 2.83 |
2982 | 3082 | 0.250338 | GCCTGAAACTGAACCTCGGT | 60.250 | 55.000 | 0.00 | 0.00 | 37.65 | 4.69 |
3031 | 3131 | 1.294659 | CTCGCTCTGCCCACAACTTC | 61.295 | 60.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3380 | 3484 | 3.069872 | ACACAAGCATGAAATTGGAGCAA | 59.930 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
3385 | 3489 | 4.575645 | ACCAAAACACAAGCATGAAATTGG | 59.424 | 37.500 | 14.28 | 14.28 | 0.00 | 3.16 |
3388 | 3492 | 5.184711 | ACAACCAAAACACAAGCATGAAAT | 58.815 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
3391 | 3495 | 3.883830 | ACAACCAAAACACAAGCATGA | 57.116 | 38.095 | 0.00 | 0.00 | 0.00 | 3.07 |
3438 | 3542 | 8.607459 | CATTACAGTTTGATCATTAGTGTCTCC | 58.393 | 37.037 | 17.40 | 0.00 | 0.00 | 3.71 |
3478 | 3600 | 5.037383 | TGTCACACCTGTAACCATTGTAA | 57.963 | 39.130 | 0.00 | 0.00 | 0.00 | 2.41 |
3479 | 3601 | 4.691326 | TGTCACACCTGTAACCATTGTA | 57.309 | 40.909 | 0.00 | 0.00 | 0.00 | 2.41 |
3489 | 3611 | 6.711277 | AGAATGTATGTTATGTCACACCTGT | 58.289 | 36.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3779 | 3940 | 6.481313 | CAGTCAATGAAGACTCAACAGAAAGA | 59.519 | 38.462 | 0.00 | 0.00 | 45.35 | 2.52 |
3917 | 4166 | 1.066430 | ACGGTTGCTGAATACCATCGT | 60.066 | 47.619 | 0.00 | 0.00 | 33.94 | 3.73 |
3918 | 4167 | 1.651987 | ACGGTTGCTGAATACCATCG | 58.348 | 50.000 | 0.00 | 0.00 | 33.94 | 3.84 |
3919 | 4168 | 2.354821 | GGAACGGTTGCTGAATACCATC | 59.645 | 50.000 | 5.03 | 0.00 | 33.94 | 3.51 |
3920 | 4169 | 2.290641 | TGGAACGGTTGCTGAATACCAT | 60.291 | 45.455 | 13.57 | 0.00 | 33.94 | 3.55 |
3921 | 4170 | 1.072489 | TGGAACGGTTGCTGAATACCA | 59.928 | 47.619 | 13.57 | 2.02 | 33.94 | 3.25 |
3922 | 4171 | 1.816074 | TGGAACGGTTGCTGAATACC | 58.184 | 50.000 | 13.57 | 0.00 | 0.00 | 2.73 |
3923 | 4172 | 3.071479 | TCTTGGAACGGTTGCTGAATAC | 58.929 | 45.455 | 13.57 | 0.00 | 0.00 | 1.89 |
3924 | 4173 | 3.334691 | CTCTTGGAACGGTTGCTGAATA | 58.665 | 45.455 | 13.57 | 0.00 | 0.00 | 1.75 |
3925 | 4174 | 2.154462 | CTCTTGGAACGGTTGCTGAAT | 58.846 | 47.619 | 13.57 | 0.00 | 0.00 | 2.57 |
3926 | 4175 | 1.593196 | CTCTTGGAACGGTTGCTGAA | 58.407 | 50.000 | 13.57 | 0.00 | 0.00 | 3.02 |
3927 | 4176 | 0.250295 | CCTCTTGGAACGGTTGCTGA | 60.250 | 55.000 | 13.57 | 10.30 | 34.57 | 4.26 |
3928 | 4177 | 0.250295 | TCCTCTTGGAACGGTTGCTG | 60.250 | 55.000 | 13.57 | 6.76 | 39.87 | 4.41 |
3929 | 4178 | 0.693049 | ATCCTCTTGGAACGGTTGCT | 59.307 | 50.000 | 13.57 | 0.00 | 46.80 | 3.91 |
3930 | 4179 | 2.396590 | TATCCTCTTGGAACGGTTGC | 57.603 | 50.000 | 5.34 | 5.34 | 46.80 | 4.17 |
3931 | 4180 | 4.332819 | GTGAATATCCTCTTGGAACGGTTG | 59.667 | 45.833 | 0.00 | 0.00 | 46.80 | 3.77 |
3932 | 4181 | 4.225267 | AGTGAATATCCTCTTGGAACGGTT | 59.775 | 41.667 | 0.00 | 0.00 | 46.80 | 4.44 |
3933 | 4182 | 3.775316 | AGTGAATATCCTCTTGGAACGGT | 59.225 | 43.478 | 0.00 | 0.00 | 46.80 | 4.83 |
3934 | 4183 | 4.408182 | AGTGAATATCCTCTTGGAACGG | 57.592 | 45.455 | 0.00 | 0.00 | 46.80 | 4.44 |
3935 | 4184 | 8.361139 | ACTATAAGTGAATATCCTCTTGGAACG | 58.639 | 37.037 | 0.00 | 0.00 | 46.80 | 3.95 |
3949 | 4198 | 8.734386 | CCAGCTTTCTCAAAACTATAAGTGAAT | 58.266 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
3950 | 4199 | 7.936847 | TCCAGCTTTCTCAAAACTATAAGTGAA | 59.063 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
3951 | 4200 | 7.450074 | TCCAGCTTTCTCAAAACTATAAGTGA | 58.550 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
3952 | 4201 | 7.672983 | TCCAGCTTTCTCAAAACTATAAGTG | 57.327 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3976 | 5101 | 4.197750 | GGACAGAAGCACATTCATCTGAT | 58.802 | 43.478 | 8.48 | 0.00 | 41.38 | 2.90 |
4018 | 5148 | 3.760151 | TGGGATGAAAATTGCTCAGACTG | 59.240 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
4059 | 5191 | 2.419324 | CTGCACCTCTGCTCAAAAGATC | 59.581 | 50.000 | 0.00 | 0.00 | 44.57 | 2.75 |
4072 | 5204 | 1.743996 | GGACTTGGATTCTGCACCTC | 58.256 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4088 | 5220 | 5.455525 | CAGTTTTTGAACAGATGTTTCGGAC | 59.544 | 40.000 | 0.00 | 0.00 | 38.56 | 4.79 |
4090 | 5222 | 5.455525 | GTCAGTTTTTGAACAGATGTTTCGG | 59.544 | 40.000 | 0.00 | 0.00 | 38.56 | 4.30 |
4145 | 5277 | 9.046296 | GTCGAATATAGTTCAGATTTGGTTCAT | 57.954 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
4165 | 5297 | 6.145535 | GCAAAAGAGAAACATTCAGTCGAAT | 58.854 | 36.000 | 0.00 | 0.00 | 42.81 | 3.34 |
4178 | 5313 | 4.351192 | GAACTTTCTGCGCAAAAGAGAAA | 58.649 | 39.130 | 32.47 | 25.89 | 37.22 | 2.52 |
4188 | 5331 | 1.425412 | TTAGTCCGAACTTTCTGCGC | 58.575 | 50.000 | 0.00 | 0.00 | 36.92 | 6.09 |
4189 | 5332 | 3.739300 | TCTTTTAGTCCGAACTTTCTGCG | 59.261 | 43.478 | 0.00 | 0.00 | 36.92 | 5.18 |
4223 | 5522 | 8.579850 | TTCAGCTTGGTTTATCATACATTCTT | 57.420 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
4238 | 5537 | 0.178981 | ACCAGCACATTCAGCTTGGT | 60.179 | 50.000 | 0.00 | 0.00 | 41.14 | 3.67 |
4279 | 5578 | 6.729690 | TCCTGTTGAAGATTGTTTGGATTT | 57.270 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
4323 | 5624 | 4.728772 | AGATTGAGTCATTTCCCAACACA | 58.271 | 39.130 | 0.00 | 0.00 | 0.00 | 3.72 |
4340 | 5641 | 7.119407 | ACTCAGATGATGAACTGTTGAAGATTG | 59.881 | 37.037 | 0.00 | 0.00 | 37.52 | 2.67 |
4343 | 5644 | 5.930569 | CACTCAGATGATGAACTGTTGAAGA | 59.069 | 40.000 | 0.00 | 0.00 | 37.52 | 2.87 |
4344 | 5645 | 5.930569 | TCACTCAGATGATGAACTGTTGAAG | 59.069 | 40.000 | 0.00 | 0.00 | 37.52 | 3.02 |
4346 | 5647 | 5.244626 | TCTCACTCAGATGATGAACTGTTGA | 59.755 | 40.000 | 0.00 | 0.00 | 37.52 | 3.18 |
4347 | 5648 | 5.348179 | GTCTCACTCAGATGATGAACTGTTG | 59.652 | 44.000 | 0.00 | 0.00 | 37.52 | 3.33 |
4348 | 5649 | 5.477510 | GTCTCACTCAGATGATGAACTGTT | 58.522 | 41.667 | 0.00 | 0.00 | 37.52 | 3.16 |
4359 | 5660 | 8.278639 | TCTTCTTCTAATAGGTCTCACTCAGAT | 58.721 | 37.037 | 0.00 | 0.00 | 32.08 | 2.90 |
4375 | 5676 | 7.670140 | TGACCAGTGACTAGAATCTTCTTCTAA | 59.330 | 37.037 | 0.00 | 0.00 | 38.70 | 2.10 |
4466 | 5767 | 5.098211 | GCGGATTTTCGTAGTAGTAGTGTT | 58.902 | 41.667 | 0.00 | 0.00 | 0.00 | 3.32 |
4470 | 5771 | 4.680110 | CCATGCGGATTTTCGTAGTAGTAG | 59.320 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
4471 | 5772 | 4.500205 | CCCATGCGGATTTTCGTAGTAGTA | 60.500 | 45.833 | 0.00 | 0.00 | 0.00 | 1.82 |
4472 | 5773 | 3.454375 | CCATGCGGATTTTCGTAGTAGT | 58.546 | 45.455 | 0.00 | 0.00 | 0.00 | 2.73 |
4473 | 5774 | 2.800544 | CCCATGCGGATTTTCGTAGTAG | 59.199 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4474 | 5775 | 2.828877 | CCCATGCGGATTTTCGTAGTA | 58.171 | 47.619 | 0.00 | 0.00 | 0.00 | 1.82 |
4475 | 5776 | 1.663695 | CCCATGCGGATTTTCGTAGT | 58.336 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
4476 | 5777 | 0.307760 | GCCCATGCGGATTTTCGTAG | 59.692 | 55.000 | 4.56 | 0.00 | 0.00 | 3.51 |
4477 | 5778 | 0.107410 | AGCCCATGCGGATTTTCGTA | 60.107 | 50.000 | 4.56 | 0.00 | 44.33 | 3.43 |
4478 | 5779 | 1.376609 | GAGCCCATGCGGATTTTCGT | 61.377 | 55.000 | 4.56 | 0.00 | 44.33 | 3.85 |
4479 | 5780 | 1.356624 | GAGCCCATGCGGATTTTCG | 59.643 | 57.895 | 4.56 | 0.00 | 44.33 | 3.46 |
4480 | 5781 | 0.383231 | CTGAGCCCATGCGGATTTTC | 59.617 | 55.000 | 4.56 | 0.00 | 44.33 | 2.29 |
4481 | 5782 | 0.034186 | TCTGAGCCCATGCGGATTTT | 60.034 | 50.000 | 4.56 | 0.00 | 44.33 | 1.82 |
4482 | 5783 | 0.184451 | ATCTGAGCCCATGCGGATTT | 59.816 | 50.000 | 4.56 | 0.00 | 44.33 | 2.17 |
4483 | 5784 | 0.536687 | CATCTGAGCCCATGCGGATT | 60.537 | 55.000 | 4.56 | 0.00 | 44.33 | 3.01 |
4484 | 5785 | 1.072678 | CATCTGAGCCCATGCGGAT | 59.927 | 57.895 | 4.56 | 0.00 | 44.33 | 4.18 |
4485 | 5786 | 2.507452 | CATCTGAGCCCATGCGGA | 59.493 | 61.111 | 4.56 | 0.00 | 44.33 | 5.54 |
4486 | 5787 | 3.285215 | GCATCTGAGCCCATGCGG | 61.285 | 66.667 | 0.00 | 0.00 | 44.33 | 5.69 |
4488 | 5789 | 1.897615 | GGAGCATCTGAGCCCATGC | 60.898 | 63.158 | 0.00 | 0.00 | 44.96 | 4.06 |
4489 | 5790 | 1.228184 | GGGAGCATCTGAGCCCATG | 60.228 | 63.158 | 0.00 | 0.00 | 40.39 | 3.66 |
4490 | 5791 | 2.815945 | CGGGAGCATCTGAGCCCAT | 61.816 | 63.158 | 0.00 | 0.00 | 40.71 | 4.00 |
4491 | 5792 | 3.473647 | CGGGAGCATCTGAGCCCA | 61.474 | 66.667 | 0.00 | 0.00 | 40.71 | 5.36 |
4503 | 5804 | 1.162800 | GCTGCCATTCTAAGCGGGAG | 61.163 | 60.000 | 0.00 | 0.00 | 40.93 | 4.30 |
4504 | 5805 | 1.153168 | GCTGCCATTCTAAGCGGGA | 60.153 | 57.895 | 0.00 | 0.00 | 35.84 | 5.14 |
4505 | 5806 | 1.451927 | TGCTGCCATTCTAAGCGGG | 60.452 | 57.895 | 0.00 | 0.00 | 39.88 | 6.13 |
4506 | 5807 | 1.026182 | TGTGCTGCCATTCTAAGCGG | 61.026 | 55.000 | 0.00 | 0.00 | 39.88 | 5.52 |
4507 | 5808 | 0.376152 | CTGTGCTGCCATTCTAAGCG | 59.624 | 55.000 | 0.00 | 0.00 | 39.88 | 4.68 |
4508 | 5809 | 0.100146 | GCTGTGCTGCCATTCTAAGC | 59.900 | 55.000 | 0.00 | 0.00 | 37.46 | 3.09 |
4509 | 5810 | 1.456296 | TGCTGTGCTGCCATTCTAAG | 58.544 | 50.000 | 0.00 | 0.00 | 0.00 | 2.18 |
4510 | 5811 | 1.908344 | TTGCTGTGCTGCCATTCTAA | 58.092 | 45.000 | 0.00 | 0.00 | 0.00 | 2.10 |
4511 | 5812 | 1.908344 | TTTGCTGTGCTGCCATTCTA | 58.092 | 45.000 | 0.00 | 0.00 | 0.00 | 2.10 |
4512 | 5813 | 1.042229 | TTTTGCTGTGCTGCCATTCT | 58.958 | 45.000 | 0.00 | 0.00 | 0.00 | 2.40 |
4513 | 5814 | 2.088950 | ATTTTGCTGTGCTGCCATTC | 57.911 | 45.000 | 0.00 | 0.00 | 0.00 | 2.67 |
4514 | 5815 | 2.554370 | AATTTTGCTGTGCTGCCATT | 57.446 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
4525 | 5826 | 3.505680 | TGAGTTGCGTGGATAATTTTGCT | 59.494 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
4526 | 5827 | 3.832276 | TGAGTTGCGTGGATAATTTTGC | 58.168 | 40.909 | 0.00 | 0.00 | 0.00 | 3.68 |
4530 | 5831 | 4.517285 | ACTGATGAGTTGCGTGGATAATT | 58.483 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
4536 | 5837 | 2.078849 | TGTACTGATGAGTTGCGTGG | 57.921 | 50.000 | 0.00 | 0.00 | 33.21 | 4.94 |
4540 | 5841 | 4.154737 | TCTGCAATTGTACTGATGAGTTGC | 59.845 | 41.667 | 7.40 | 0.00 | 33.35 | 4.17 |
4544 | 5845 | 6.094464 | TGGAAATCTGCAATTGTACTGATGAG | 59.906 | 38.462 | 7.40 | 0.00 | 0.00 | 2.90 |
4545 | 5846 | 5.945191 | TGGAAATCTGCAATTGTACTGATGA | 59.055 | 36.000 | 7.40 | 0.00 | 0.00 | 2.92 |
4546 | 5847 | 6.198650 | TGGAAATCTGCAATTGTACTGATG | 57.801 | 37.500 | 7.40 | 0.00 | 0.00 | 3.07 |
4547 | 5848 | 8.701908 | ATATGGAAATCTGCAATTGTACTGAT | 57.298 | 30.769 | 7.40 | 3.78 | 0.00 | 2.90 |
4607 | 5909 | 5.622770 | ACTTTGTATTCGGTTGATGGAAC | 57.377 | 39.130 | 0.00 | 0.00 | 0.00 | 3.62 |
4609 | 5911 | 5.353123 | GCTTACTTTGTATTCGGTTGATGGA | 59.647 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4610 | 5912 | 5.354234 | AGCTTACTTTGTATTCGGTTGATGG | 59.646 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4611 | 5913 | 6.422776 | AGCTTACTTTGTATTCGGTTGATG | 57.577 | 37.500 | 0.00 | 0.00 | 0.00 | 3.07 |
4613 | 5915 | 5.180492 | CCAAGCTTACTTTGTATTCGGTTGA | 59.820 | 40.000 | 0.00 | 0.00 | 32.29 | 3.18 |
4614 | 5916 | 5.048991 | ACCAAGCTTACTTTGTATTCGGTTG | 60.049 | 40.000 | 0.00 | 0.00 | 30.37 | 3.77 |
4615 | 5917 | 5.067954 | ACCAAGCTTACTTTGTATTCGGTT | 58.932 | 37.500 | 0.00 | 0.00 | 30.37 | 4.44 |
4616 | 5918 | 4.648651 | ACCAAGCTTACTTTGTATTCGGT | 58.351 | 39.130 | 0.00 | 0.00 | 30.37 | 4.69 |
4617 | 5919 | 5.622770 | AACCAAGCTTACTTTGTATTCGG | 57.377 | 39.130 | 0.00 | 0.00 | 30.88 | 4.30 |
4631 | 5933 | 9.407380 | TGTGATGAACAATATATAAACCAAGCT | 57.593 | 29.630 | 0.00 | 0.00 | 35.24 | 3.74 |
4632 | 5934 | 9.450807 | GTGTGATGAACAATATATAAACCAAGC | 57.549 | 33.333 | 0.00 | 0.00 | 41.57 | 4.01 |
4633 | 5935 | 9.650371 | CGTGTGATGAACAATATATAAACCAAG | 57.350 | 33.333 | 0.00 | 0.00 | 41.57 | 3.61 |
4634 | 5936 | 8.126074 | GCGTGTGATGAACAATATATAAACCAA | 58.874 | 33.333 | 0.00 | 0.00 | 41.57 | 3.67 |
4645 | 6993 | 1.806542 | GGTGAGCGTGTGATGAACAAT | 59.193 | 47.619 | 0.00 | 0.00 | 41.57 | 2.71 |
4647 | 6995 | 0.105778 | TGGTGAGCGTGTGATGAACA | 59.894 | 50.000 | 0.00 | 0.00 | 36.04 | 3.18 |
4651 | 6999 | 3.015293 | GCGTGGTGAGCGTGTGATG | 62.015 | 63.158 | 0.00 | 0.00 | 0.00 | 3.07 |
4653 | 7001 | 4.214327 | TGCGTGGTGAGCGTGTGA | 62.214 | 61.111 | 0.00 | 0.00 | 37.44 | 3.58 |
4654 | 7002 | 3.705638 | CTGCGTGGTGAGCGTGTG | 61.706 | 66.667 | 0.00 | 0.00 | 37.44 | 3.82 |
4655 | 7003 | 4.969196 | CCTGCGTGGTGAGCGTGT | 62.969 | 66.667 | 0.00 | 0.00 | 37.44 | 4.49 |
4656 | 7004 | 3.939837 | ATCCTGCGTGGTGAGCGTG | 62.940 | 63.158 | 0.00 | 0.00 | 37.44 | 5.34 |
4657 | 7005 | 2.731691 | AAATCCTGCGTGGTGAGCGT | 62.732 | 55.000 | 0.00 | 0.00 | 37.44 | 5.07 |
4658 | 7006 | 0.739462 | TAAATCCTGCGTGGTGAGCG | 60.739 | 55.000 | 0.00 | 0.00 | 37.44 | 5.03 |
4659 | 7007 | 0.727398 | GTAAATCCTGCGTGGTGAGC | 59.273 | 55.000 | 0.00 | 0.00 | 37.07 | 4.26 |
4660 | 7008 | 2.093306 | TGTAAATCCTGCGTGGTGAG | 57.907 | 50.000 | 0.00 | 0.00 | 37.07 | 3.51 |
4661 | 7009 | 2.552599 | TTGTAAATCCTGCGTGGTGA | 57.447 | 45.000 | 0.00 | 0.00 | 37.07 | 4.02 |
4662 | 7010 | 3.440173 | AGATTTGTAAATCCTGCGTGGTG | 59.560 | 43.478 | 12.41 | 0.00 | 44.55 | 4.17 |
4663 | 7011 | 3.440173 | CAGATTTGTAAATCCTGCGTGGT | 59.560 | 43.478 | 12.41 | 0.00 | 44.55 | 4.16 |
4664 | 7012 | 3.181497 | CCAGATTTGTAAATCCTGCGTGG | 60.181 | 47.826 | 12.41 | 9.81 | 44.55 | 4.94 |
4665 | 7013 | 3.181497 | CCCAGATTTGTAAATCCTGCGTG | 60.181 | 47.826 | 12.41 | 5.50 | 44.55 | 5.34 |
4666 | 7014 | 3.016736 | CCCAGATTTGTAAATCCTGCGT | 58.983 | 45.455 | 12.41 | 0.00 | 44.55 | 5.24 |
4667 | 7015 | 3.016736 | ACCCAGATTTGTAAATCCTGCG | 58.983 | 45.455 | 12.41 | 6.75 | 44.55 | 5.18 |
4668 | 7016 | 4.462483 | TCAACCCAGATTTGTAAATCCTGC | 59.538 | 41.667 | 12.41 | 0.00 | 44.55 | 4.85 |
4669 | 7017 | 6.567050 | CATCAACCCAGATTTGTAAATCCTG | 58.433 | 40.000 | 12.41 | 10.17 | 44.55 | 3.86 |
4670 | 7018 | 5.127682 | GCATCAACCCAGATTTGTAAATCCT | 59.872 | 40.000 | 12.41 | 0.30 | 44.55 | 3.24 |
4671 | 7019 | 5.105392 | TGCATCAACCCAGATTTGTAAATCC | 60.105 | 40.000 | 12.41 | 0.00 | 44.55 | 3.01 |
4672 | 7020 | 5.807011 | GTGCATCAACCCAGATTTGTAAATC | 59.193 | 40.000 | 8.87 | 8.87 | 43.96 | 2.17 |
4673 | 7021 | 5.245751 | TGTGCATCAACCCAGATTTGTAAAT | 59.754 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
4674 | 7022 | 4.586421 | TGTGCATCAACCCAGATTTGTAAA | 59.414 | 37.500 | 0.00 | 0.00 | 0.00 | 2.01 |
4675 | 7023 | 4.148079 | TGTGCATCAACCCAGATTTGTAA | 58.852 | 39.130 | 0.00 | 0.00 | 0.00 | 2.41 |
4676 | 7024 | 3.758023 | CTGTGCATCAACCCAGATTTGTA | 59.242 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
4678 | 7026 | 2.673043 | GCTGTGCATCAACCCAGATTTG | 60.673 | 50.000 | 4.08 | 0.00 | 0.00 | 2.32 |
4679 | 7027 | 1.547372 | GCTGTGCATCAACCCAGATTT | 59.453 | 47.619 | 4.08 | 0.00 | 0.00 | 2.17 |
4680 | 7028 | 1.180029 | GCTGTGCATCAACCCAGATT | 58.820 | 50.000 | 4.08 | 0.00 | 0.00 | 2.40 |
4681 | 7029 | 0.682209 | GGCTGTGCATCAACCCAGAT | 60.682 | 55.000 | 4.08 | 0.00 | 0.00 | 2.90 |
4682 | 7030 | 1.303561 | GGCTGTGCATCAACCCAGA | 60.304 | 57.895 | 4.08 | 0.00 | 0.00 | 3.86 |
4687 | 7035 | 4.120331 | GCCGGGCTGTGCATCAAC | 62.120 | 66.667 | 12.87 | 0.00 | 0.00 | 3.18 |
4689 | 7037 | 3.041469 | TATGCCGGGCTGTGCATCA | 62.041 | 57.895 | 21.46 | 0.00 | 44.58 | 3.07 |
4690 | 7038 | 2.203195 | TATGCCGGGCTGTGCATC | 60.203 | 61.111 | 21.46 | 0.00 | 44.58 | 3.91 |
4692 | 7040 | 4.027173 | TGTATGCCGGGCTGTGCA | 62.027 | 61.111 | 21.46 | 15.16 | 42.52 | 4.57 |
4693 | 7041 | 3.508840 | GTGTATGCCGGGCTGTGC | 61.509 | 66.667 | 21.46 | 12.73 | 0.00 | 4.57 |
4695 | 7043 | 1.674322 | GTTGTGTATGCCGGGCTGT | 60.674 | 57.895 | 21.46 | 11.47 | 0.00 | 4.40 |
4696 | 7044 | 2.406616 | GGTTGTGTATGCCGGGCTG | 61.407 | 63.158 | 21.46 | 0.00 | 0.00 | 4.85 |
4697 | 7045 | 2.045340 | GGTTGTGTATGCCGGGCT | 60.045 | 61.111 | 21.46 | 8.36 | 0.00 | 5.19 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.