Multiple sequence alignment - TraesCS7A01G030800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G030800 chr7A 100.000 2398 0 0 1 2398 12653728 12651331 0.000000e+00 4429.0
1 TraesCS7A01G030800 chr7A 85.690 1740 169 48 704 2386 12455648 12453932 0.000000e+00 1760.0
2 TraesCS7A01G030800 chr7A 86.507 1045 90 28 694 1701 12429974 12428944 0.000000e+00 1101.0
3 TraesCS7A01G030800 chr7A 100.000 526 0 0 2801 3326 12650928 12650403 0.000000e+00 972.0
4 TraesCS7A01G030800 chr7A 86.370 719 62 18 1706 2396 12428906 12428196 0.000000e+00 752.0
5 TraesCS7A01G030800 chr7A 81.941 371 44 18 2949 3314 12427944 12427592 3.250000e-75 292.0
6 TraesCS7A01G030800 chr7A 89.024 164 9 5 616 773 12430093 12429933 9.420000e-46 195.0
7 TraesCS7A01G030800 chr7A 84.507 142 16 2 2806 2942 12428120 12427980 5.790000e-28 135.0
8 TraesCS7A01G030800 chr7A 93.056 72 4 1 616 687 12457518 12457448 1.630000e-18 104.0
9 TraesCS7A01G030800 chr7D 90.932 2018 134 22 391 2374 13098770 13096768 0.000000e+00 2667.0
10 TraesCS7A01G030800 chr7D 89.395 1075 87 12 1342 2396 13066899 13065832 0.000000e+00 1328.0
11 TraesCS7A01G030800 chr7D 85.387 1047 92 37 704 1701 13029843 13028809 0.000000e+00 1029.0
12 TraesCS7A01G030800 chr7D 85.339 723 63 24 1706 2396 13028771 13028060 0.000000e+00 708.0
13 TraesCS7A01G030800 chr7D 83.642 593 59 25 704 1271 13067829 13067250 1.060000e-144 523.0
14 TraesCS7A01G030800 chr7D 84.085 377 28 14 2949 3311 13027807 13027449 5.320000e-88 335.0
15 TraesCS7A01G030800 chr7D 84.226 336 41 10 2801 3130 13065759 13065430 1.930000e-82 316.0
16 TraesCS7A01G030800 chr7D 90.732 205 16 2 3115 3319 13044106 13043905 1.520000e-68 270.0
17 TraesCS7A01G030800 chr7D 86.555 119 11 3 2806 2922 13027985 13027870 3.480000e-25 126.0
18 TraesCS7A01G030800 chr4A 88.796 2151 114 36 1 2094 724581103 724579023 0.000000e+00 2519.0
19 TraesCS7A01G030800 chr4A 84.912 1763 163 45 704 2396 724782335 724784064 0.000000e+00 1687.0
20 TraesCS7A01G030800 chr4A 87.805 1025 87 7 1392 2396 724399909 724398903 0.000000e+00 1166.0
21 TraesCS7A01G030800 chr4A 86.364 660 43 23 704 1342 724400544 724399911 0.000000e+00 676.0
22 TraesCS7A01G030800 chr4A 79.218 563 58 29 2806 3321 724784138 724784688 1.480000e-88 337.0
23 TraesCS7A01G030800 chr4A 87.685 203 18 3 2202 2397 724578971 724578769 2.580000e-56 230.0
24 TraesCS7A01G030800 chr4D 83.844 1795 172 61 704 2396 506607452 506605674 0.000000e+00 1600.0
25 TraesCS7A01G030800 chr4D 85.561 374 27 12 2949 3309 506605426 506605067 1.890000e-97 366.0
26 TraesCS7A01G030800 chr4D 83.824 136 17 3 2810 2942 506605595 506605462 1.250000e-24 124.0
27 TraesCS7A01G030800 chrUn 86.806 144 16 3 233 376 9641115 9640975 1.240000e-34 158.0
28 TraesCS7A01G030800 chr2A 90.541 74 5 2 1342 1414 607841870 607841798 2.730000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G030800 chr7A 12650403 12653728 3325 True 2700.500000 4429 100.000000 1 3326 2 chr7A.!!$R3 3325
1 TraesCS7A01G030800 chr7A 12453932 12457518 3586 True 932.000000 1760 89.373000 616 2386 2 chr7A.!!$R2 1770
2 TraesCS7A01G030800 chr7A 12427592 12430093 2501 True 495.000000 1101 85.669800 616 3314 5 chr7A.!!$R1 2698
3 TraesCS7A01G030800 chr7D 13096768 13098770 2002 True 2667.000000 2667 90.932000 391 2374 1 chr7D.!!$R2 1983
4 TraesCS7A01G030800 chr7D 13065430 13067829 2399 True 722.333333 1328 85.754333 704 3130 3 chr7D.!!$R4 2426
5 TraesCS7A01G030800 chr7D 13027449 13029843 2394 True 549.500000 1029 85.341500 704 3311 4 chr7D.!!$R3 2607
6 TraesCS7A01G030800 chr4A 724578769 724581103 2334 True 1374.500000 2519 88.240500 1 2397 2 chr4A.!!$R2 2396
7 TraesCS7A01G030800 chr4A 724782335 724784688 2353 False 1012.000000 1687 82.065000 704 3321 2 chr4A.!!$F1 2617
8 TraesCS7A01G030800 chr4A 724398903 724400544 1641 True 921.000000 1166 87.084500 704 2396 2 chr4A.!!$R1 1692
9 TraesCS7A01G030800 chr4D 506605067 506607452 2385 True 696.666667 1600 84.409667 704 3309 3 chr4D.!!$R1 2605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
819 2681 0.572590 CTTCCTTAGCGTTCGATGCG 59.427 55.000 5.67 5.67 34.72 4.73 F
1090 3005 0.173481 GCTGCTGGTCGAGTACATCA 59.827 55.000 0.00 0.00 0.00 3.07 F
1569 3777 1.133253 CTGGAACATGAACGCGCTG 59.867 57.895 5.73 1.02 38.20 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2007 4275 0.243907 CGTCCGTGTTGAGGTCATCT 59.756 55.000 0.0 0.0 0.0 2.90 R
2120 4401 2.954318 GGTGGATGGAAATGAGACATGG 59.046 50.000 0.0 0.0 0.0 3.66 R
3124 5479 2.494059 CGGACTCACAAGACCAACATT 58.506 47.619 0.0 0.0 37.2 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 142 9.617975 GAGGATTCTTTCTACACATTTCAAAAG 57.382 33.333 0.00 0.00 0.00 2.27
136 143 8.579863 AGGATTCTTTCTACACATTTCAAAAGG 58.420 33.333 0.00 0.00 0.00 3.11
144 151 2.799978 CACATTTCAAAAGGCGGGTTTC 59.200 45.455 0.00 0.00 0.00 2.78
145 152 2.432510 ACATTTCAAAAGGCGGGTTTCA 59.567 40.909 0.00 0.00 0.00 2.69
146 153 3.070878 ACATTTCAAAAGGCGGGTTTCAT 59.929 39.130 0.00 0.00 0.00 2.57
193 200 2.672961 TATCGTGAGGCTCCAAGTTG 57.327 50.000 12.86 0.00 0.00 3.16
203 210 1.339535 GCTCCAAGTTGCCTAAGAGCT 60.340 52.381 18.35 0.00 40.38 4.09
215 222 3.801983 GCCTAAGAGCTCTCTATGCAACC 60.802 52.174 18.55 0.00 39.39 3.77
258 265 5.574082 TGAAATTCAAAACTTCTTCGCGAA 58.426 33.333 22.01 22.01 0.00 4.70
315 322 5.227569 TGAGAATTTCTGACAAGGCTACA 57.772 39.130 3.03 0.00 0.00 2.74
372 379 0.960364 GTTTGAGCGGCCTCCAATCA 60.960 55.000 0.00 0.00 37.29 2.57
379 386 1.308998 CGGCCTCCAATCATTGTACC 58.691 55.000 0.00 0.00 0.00 3.34
383 390 2.357154 GCCTCCAATCATTGTACCTGGT 60.357 50.000 4.05 4.05 0.00 4.00
388 395 2.824936 CAATCATTGTACCTGGTTGGCA 59.175 45.455 3.84 0.00 40.22 4.92
416 423 1.561542 AGAGAGGGTGGCATTTCGAAT 59.438 47.619 0.00 0.00 0.00 3.34
562 596 6.199908 TGCCTAAAATTGTCATCAAAACGTTG 59.800 34.615 0.00 0.00 37.11 4.10
702 2532 3.008485 GGACAGACAGGGTGAGAGATTTT 59.992 47.826 0.00 0.00 0.00 1.82
740 2572 2.098443 GGTCGCTAGAGAGAGAAACAGG 59.902 54.545 0.00 0.00 32.85 4.00
819 2681 0.572590 CTTCCTTAGCGTTCGATGCG 59.427 55.000 5.67 5.67 34.72 4.73
853 2727 4.400251 CGTCCACCTCCCCCTCCT 62.400 72.222 0.00 0.00 0.00 3.69
994 2909 5.887035 AGGAGTAGCAACTAGATCGTTAGTT 59.113 40.000 0.00 2.35 42.94 2.24
1058 2973 3.782443 GAAGGGGCCGTGGACGAT 61.782 66.667 0.00 0.00 43.02 3.73
1083 2998 1.739562 GGACAAGCTGCTGGTCGAG 60.740 63.158 26.32 6.11 35.39 4.04
1090 3005 0.173481 GCTGCTGGTCGAGTACATCA 59.827 55.000 0.00 0.00 0.00 3.07
1134 3049 4.148825 CGCCTACCCAAGCTCGCT 62.149 66.667 0.00 0.00 0.00 4.93
1143 3058 1.748122 CAAGCTCGCTGGCCTCAAT 60.748 57.895 3.32 0.00 0.00 2.57
1158 3073 2.046892 AATCGCTGCGGCAAGAGT 60.047 55.556 23.03 3.71 38.60 3.24
1300 3215 2.133281 TGCATGCTTTCTGGCTACAT 57.867 45.000 20.33 0.00 0.00 2.29
1301 3216 3.280197 TGCATGCTTTCTGGCTACATA 57.720 42.857 20.33 0.00 0.00 2.29
1526 3734 1.508088 CGGTAGCCGGTAACTTCGT 59.492 57.895 1.90 0.00 44.15 3.85
1569 3777 1.133253 CTGGAACATGAACGCGCTG 59.867 57.895 5.73 1.02 38.20 5.18
1587 3795 2.992114 AAGCTCCAGGTCGACGCT 60.992 61.111 9.92 9.30 0.00 5.07
1673 3887 1.746615 CCGGCATGGACAACCTCAG 60.747 63.158 0.00 0.00 42.00 3.35
1886 4136 2.434359 GGTGAGCGGGAGAAACGG 60.434 66.667 0.00 0.00 0.00 4.44
1887 4137 2.654877 GTGAGCGGGAGAAACGGA 59.345 61.111 0.00 0.00 0.00 4.69
2007 4275 2.695666 GCTACAGAGCCTGAACCTGATA 59.304 50.000 8.91 0.00 43.49 2.15
2072 4345 1.492176 AGTACCTGCTCCCATTCCATG 59.508 52.381 0.00 0.00 0.00 3.66
2087 4360 7.340232 TCCCATTCCATGAACTTTCTATCAAAG 59.660 37.037 0.00 0.00 0.00 2.77
2094 4368 9.617975 CCATGAACTTTCTATCAAAGAGAAAAC 57.382 33.333 0.00 0.00 41.24 2.43
2120 4401 3.788333 ATAAACACACATGCATGCCTC 57.212 42.857 26.53 0.00 0.00 4.70
2129 4410 4.341030 ACATGCATGCCTCCATGTCTCA 62.341 50.000 26.53 0.00 46.56 3.27
2142 4426 3.623703 CATGTCTCATTTCCATCCACCA 58.376 45.455 0.00 0.00 0.00 4.17
2146 4430 4.898265 TGTCTCATTTCCATCCACCAAAAA 59.102 37.500 0.00 0.00 0.00 1.94
2348 4659 9.303116 GTGATGGGTAGATAGAAGAGATAAGAA 57.697 37.037 0.00 0.00 0.00 2.52
2358 4669 9.762933 GATAGAAGAGATAAGAACAAGAATGCT 57.237 33.333 0.00 0.00 0.00 3.79
2392 4705 8.380742 TCTGGAAAGATGGAGACTACTAATTT 57.619 34.615 0.00 0.00 0.00 1.82
2396 4709 9.449719 GGAAAGATGGAGACTACTAATTTTTGA 57.550 33.333 0.00 0.00 0.00 2.69
2825 5138 4.447724 TCGAGTTCACACTTTTAGACATGC 59.552 41.667 0.00 0.00 31.22 4.06
2827 5140 5.613360 CGAGTTCACACTTTTAGACATGCAG 60.613 44.000 0.00 0.00 31.22 4.41
2828 5141 4.516698 AGTTCACACTTTTAGACATGCAGG 59.483 41.667 0.00 0.00 0.00 4.85
2829 5142 3.411446 TCACACTTTTAGACATGCAGGG 58.589 45.455 2.31 0.00 0.00 4.45
2918 5238 9.810545 TTAATTAGTTTCTTTGTTGTTTCCCTG 57.189 29.630 0.00 0.00 0.00 4.45
2962 5316 5.596836 AAGTTGAATTCCAGACAGCAAAA 57.403 34.783 2.27 0.00 0.00 2.44
2963 5317 5.192327 AGTTGAATTCCAGACAGCAAAAG 57.808 39.130 2.27 0.00 0.00 2.27
2964 5318 4.646492 AGTTGAATTCCAGACAGCAAAAGT 59.354 37.500 2.27 0.00 0.00 2.66
2965 5319 5.827797 AGTTGAATTCCAGACAGCAAAAGTA 59.172 36.000 2.27 0.00 0.00 2.24
2973 5327 4.275689 CCAGACAGCAAAAGTATGTGTGAA 59.724 41.667 3.56 0.00 39.78 3.18
3033 5387 7.977789 TCTTTAGTCTTGCATAATGACACAA 57.022 32.000 10.67 3.91 33.56 3.33
3074 5429 4.060038 ACTTTCTCTTGCGTGAAGAAGA 57.940 40.909 1.45 0.00 40.33 2.87
3144 5499 2.169832 ATGTTGGTCTTGTGAGTCCG 57.830 50.000 0.00 0.00 34.28 4.79
3150 5506 2.000447 GGTCTTGTGAGTCCGCATTAC 59.000 52.381 0.00 0.00 32.17 1.89
3157 5513 3.006430 TGTGAGTCCGCATTACTCTTCAA 59.994 43.478 10.40 0.00 43.13 2.69
3164 5520 5.753438 GTCCGCATTACTCTTCAATGTGATA 59.247 40.000 9.53 0.00 43.41 2.15
3165 5521 6.425114 GTCCGCATTACTCTTCAATGTGATAT 59.575 38.462 9.53 0.00 43.41 1.63
3193 5561 7.878127 ACTTTGCGACAATAATAGTATGGCTAT 59.122 33.333 0.00 0.00 41.91 2.97
3197 5569 9.961265 TGCGACAATAATAGTATGGCTATATAC 57.039 33.333 0.00 0.00 39.36 1.47
3198 5570 9.961265 GCGACAATAATAGTATGGCTATATACA 57.039 33.333 0.00 0.00 39.36 2.29
3208 5580 8.267620 AGTATGGCTATATACATATGCATGGT 57.732 34.615 10.16 10.19 36.27 3.55
3209 5581 8.370940 AGTATGGCTATATACATATGCATGGTC 58.629 37.037 10.16 0.00 36.27 4.02
3210 5582 5.600696 TGGCTATATACATATGCATGGTCG 58.399 41.667 10.16 0.00 36.39 4.79
3211 5583 4.991056 GGCTATATACATATGCATGGTCGG 59.009 45.833 10.16 0.00 36.39 4.79
3213 5585 6.239204 GGCTATATACATATGCATGGTCGGTA 60.239 42.308 10.16 4.97 36.39 4.02
3214 5586 6.863645 GCTATATACATATGCATGGTCGGTAG 59.136 42.308 10.16 10.60 36.39 3.18
3215 5587 6.791867 ATATACATATGCATGGTCGGTAGT 57.208 37.500 10.16 0.00 36.39 2.73
3216 5588 3.386768 ACATATGCATGGTCGGTAGTC 57.613 47.619 10.16 0.00 36.39 2.59
3217 5589 2.965831 ACATATGCATGGTCGGTAGTCT 59.034 45.455 10.16 0.00 36.39 3.24
3218 5590 4.149598 ACATATGCATGGTCGGTAGTCTA 58.850 43.478 10.16 0.00 36.39 2.59
3219 5591 4.587262 ACATATGCATGGTCGGTAGTCTAA 59.413 41.667 10.16 0.00 36.39 2.10
3220 5592 5.246203 ACATATGCATGGTCGGTAGTCTAAT 59.754 40.000 10.16 0.00 36.39 1.73
3221 5593 4.689612 ATGCATGGTCGGTAGTCTAATT 57.310 40.909 0.00 0.00 0.00 1.40
3222 5594 5.801531 ATGCATGGTCGGTAGTCTAATTA 57.198 39.130 0.00 0.00 0.00 1.40
3287 5659 6.578163 AGAGAAGGTAAAGTCTACACTGTC 57.422 41.667 0.00 0.00 31.06 3.51
3288 5660 6.069331 AGAGAAGGTAAAGTCTACACTGTCA 58.931 40.000 0.00 0.00 31.06 3.58
3290 5662 5.834204 AGAAGGTAAAGTCTACACTGTCAGT 59.166 40.000 0.00 0.00 31.06 3.41
3301 5673 4.422073 ACACTGTCAGTCTTCCATTTCA 57.578 40.909 1.37 0.00 0.00 2.69
3311 5683 5.124457 CAGTCTTCCATTTCACATTAGGGTG 59.876 44.000 0.00 0.00 40.16 4.61
3324 5696 7.921786 CACATTAGGGTGTGTATATAATGGG 57.078 40.000 7.82 0.75 43.43 4.00
3325 5697 7.685481 CACATTAGGGTGTGTATATAATGGGA 58.315 38.462 7.82 0.00 43.43 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 50 0.668096 TGCCGCAATACGTCGTTTCT 60.668 50.000 1.78 0.00 41.42 2.52
44 51 0.164217 TTGCCGCAATACGTCGTTTC 59.836 50.000 1.78 0.00 41.42 2.78
135 142 2.104281 AGGTATGACTATGAAACCCGCC 59.896 50.000 0.00 0.00 0.00 6.13
136 143 3.470645 AGGTATGACTATGAAACCCGC 57.529 47.619 0.00 0.00 0.00 6.13
193 200 3.389221 GTTGCATAGAGAGCTCTTAGGC 58.611 50.000 19.36 22.17 40.93 3.93
203 210 5.508567 TGGAAATGAATGGTTGCATAGAGA 58.491 37.500 0.00 0.00 0.00 3.10
258 265 2.058595 CCGAGGATGACGGGAAGGT 61.059 63.158 0.00 0.00 45.65 3.50
303 310 3.211045 GGTCAAAAGTGTAGCCTTGTCA 58.789 45.455 0.00 0.00 0.00 3.58
338 345 4.947147 AACCCGCCGCTTTGAGCA 62.947 61.111 0.50 0.00 42.58 4.26
379 386 2.031012 TCAGCGAGTGCCAACCAG 59.969 61.111 0.00 0.00 44.31 4.00
383 390 1.588597 CTCTCTCAGCGAGTGCCAA 59.411 57.895 5.66 0.00 44.31 4.52
386 393 2.347322 ACCCTCTCTCAGCGAGTGC 61.347 63.158 5.66 0.00 40.75 4.40
388 395 1.680651 CCACCCTCTCTCAGCGAGT 60.681 63.158 5.66 0.00 40.75 4.18
416 423 5.645497 ACAACTAAAATTGCCAGCAAAAACA 59.355 32.000 9.44 0.00 39.55 2.83
549 583 4.038042 TGGTATTTGCCAACGTTTTGATGA 59.962 37.500 0.00 0.00 35.25 2.92
702 2532 3.078097 CGACCTCTCTGTTTCTCTCTCA 58.922 50.000 0.00 0.00 0.00 3.27
740 2572 2.682836 GACCTCTCTGTTTCTCACTGC 58.317 52.381 0.00 0.00 0.00 4.40
819 2681 1.007734 CGATGATGCTTGCATGGCC 60.008 57.895 13.18 0.00 0.00 5.36
828 2690 1.690219 GGGAGGTGGACGATGATGCT 61.690 60.000 0.00 0.00 0.00 3.79
875 2754 0.623617 GTTGGGGTGGATAGGAGGGT 60.624 60.000 0.00 0.00 0.00 4.34
1030 2945 4.016706 CCCCTTCTTCACGCCGGT 62.017 66.667 1.90 0.00 0.00 5.28
1058 2973 1.607756 AGCAGCTTGTCCTCCTCGA 60.608 57.895 0.00 0.00 0.00 4.04
1083 2998 3.010420 GTGGCCTTTCTCCTTGATGTAC 58.990 50.000 3.32 0.00 0.00 2.90
1090 3005 2.034221 GCCGTGGCCTTTCTCCTT 59.966 61.111 3.32 0.00 34.56 3.36
1143 3058 3.043713 CAACTCTTGCCGCAGCGA 61.044 61.111 18.75 0.00 44.31 4.93
1300 3215 0.385751 CGGCGCCTGAGAAGAAGATA 59.614 55.000 26.68 0.00 0.00 1.98
1301 3216 1.142748 CGGCGCCTGAGAAGAAGAT 59.857 57.895 26.68 0.00 0.00 2.40
1569 3777 2.507324 GCGTCGACCTGGAGCTTC 60.507 66.667 10.58 0.00 0.00 3.86
1587 3795 1.900016 CAGCAGCTGGAACTTGGCA 60.900 57.895 17.12 0.00 0.00 4.92
1871 4121 1.005394 GTTCCGTTTCTCCCGCTCA 60.005 57.895 0.00 0.00 0.00 4.26
1881 4131 2.029518 GGGTCGACGGTTCCGTTT 59.970 61.111 17.90 0.00 43.08 3.60
1886 4136 3.884900 CCATTGGGTCGACGGTTC 58.115 61.111 9.92 0.00 0.00 3.62
1990 4258 3.640498 TCATCTATCAGGTTCAGGCTCTG 59.360 47.826 0.00 0.00 0.00 3.35
2007 4275 0.243907 CGTCCGTGTTGAGGTCATCT 59.756 55.000 0.00 0.00 0.00 2.90
2120 4401 2.954318 GGTGGATGGAAATGAGACATGG 59.046 50.000 0.00 0.00 0.00 3.66
2208 4511 9.496710 TTCCAGATAAAAATGACCTAGGTAGTA 57.503 33.333 16.29 4.83 0.00 1.82
2239 4542 4.488126 TTCAGCTAAGCATTGTGTGAAC 57.512 40.909 0.00 0.00 0.00 3.18
2369 4680 9.231297 CAAAAATTAGTAGTCTCCATCTTTCCA 57.769 33.333 0.00 0.00 0.00 3.53
2808 5121 3.072330 TCCCTGCATGTCTAAAAGTGTGA 59.928 43.478 0.00 0.00 0.00 3.58
2937 5262 5.885230 TGCTGTCTGGAATTCAACTTATG 57.115 39.130 7.93 0.00 0.00 1.90
2942 5267 4.936891 ACTTTTGCTGTCTGGAATTCAAC 58.063 39.130 7.93 3.05 0.00 3.18
2944 5269 5.769662 ACATACTTTTGCTGTCTGGAATTCA 59.230 36.000 7.93 0.00 0.00 2.57
2947 5272 5.048504 CACACATACTTTTGCTGTCTGGAAT 60.049 40.000 0.00 0.00 0.00 3.01
2962 5316 4.811024 CACACTCACACTTTCACACATACT 59.189 41.667 0.00 0.00 0.00 2.12
2963 5317 4.808895 TCACACTCACACTTTCACACATAC 59.191 41.667 0.00 0.00 0.00 2.39
2964 5318 4.808895 GTCACACTCACACTTTCACACATA 59.191 41.667 0.00 0.00 0.00 2.29
2965 5319 3.623060 GTCACACTCACACTTTCACACAT 59.377 43.478 0.00 0.00 0.00 3.21
2973 5327 7.939784 TGAGTATATAGTCACACTCACACTT 57.060 36.000 15.03 0.00 41.76 3.16
3074 5429 6.094048 CCAATCAAATGACGACCTGAGTTTAT 59.906 38.462 0.00 0.00 0.00 1.40
3124 5479 2.494059 CGGACTCACAAGACCAACATT 58.506 47.619 0.00 0.00 37.20 2.71
3150 5506 7.848051 GTCGCAAAGTAATATCACATTGAAGAG 59.152 37.037 0.00 0.00 30.57 2.85
3164 5520 8.504005 GCCATACTATTATTGTCGCAAAGTAAT 58.496 33.333 6.19 5.49 0.00 1.89
3165 5521 7.713507 AGCCATACTATTATTGTCGCAAAGTAA 59.286 33.333 6.19 0.06 0.00 2.24
3183 5551 8.267620 ACCATGCATATGTATATAGCCATACT 57.732 34.615 5.94 0.00 33.37 2.12
3193 5561 5.949952 AGACTACCGACCATGCATATGTATA 59.050 40.000 5.94 0.00 32.21 1.47
3197 5569 3.667497 AGACTACCGACCATGCATATG 57.333 47.619 0.00 0.00 0.00 1.78
3198 5570 6.360370 AATTAGACTACCGACCATGCATAT 57.640 37.500 0.00 0.00 0.00 1.78
3199 5571 5.801531 AATTAGACTACCGACCATGCATA 57.198 39.130 0.00 0.00 0.00 3.14
3200 5572 4.689612 AATTAGACTACCGACCATGCAT 57.310 40.909 0.00 0.00 0.00 3.96
3203 5575 5.989168 TGCAATAATTAGACTACCGACCATG 59.011 40.000 0.00 0.00 0.00 3.66
3204 5576 6.169557 TGCAATAATTAGACTACCGACCAT 57.830 37.500 0.00 0.00 0.00 3.55
3205 5577 5.601583 TGCAATAATTAGACTACCGACCA 57.398 39.130 0.00 0.00 0.00 4.02
3207 5579 7.891183 ATGATGCAATAATTAGACTACCGAC 57.109 36.000 0.00 0.00 0.00 4.79
3222 5594 9.955102 ACACAATGATAGTCTATATGATGCAAT 57.045 29.630 0.00 0.00 0.00 3.56
3262 5634 7.390996 TGACAGTGTAGACTTTACCTTCTCTAG 59.609 40.741 0.00 0.00 0.00 2.43
3271 5643 6.151004 GGAAGACTGACAGTGTAGACTTTAC 58.849 44.000 14.14 3.85 31.05 2.01
3274 5646 4.215908 TGGAAGACTGACAGTGTAGACTT 58.784 43.478 14.14 9.46 32.98 3.01
3287 5659 5.124457 CACCCTAATGTGAAATGGAAGACTG 59.876 44.000 0.00 0.00 38.55 3.51
3288 5660 5.222130 ACACCCTAATGTGAAATGGAAGACT 60.222 40.000 0.00 0.00 39.57 3.24
3290 5662 5.255397 ACACCCTAATGTGAAATGGAAGA 57.745 39.130 0.00 0.00 39.57 2.87
3301 5673 7.881912 TCCCATTATATACACACCCTAATGT 57.118 36.000 0.00 0.00 31.10 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.