Multiple sequence alignment - TraesCS7A01G030700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G030700 chr7A 100.000 3350 0 0 1 3350 12456343 12452994 0.000000e+00 6187.0
1 TraesCS7A01G030700 chr7A 85.272 2485 192 79 649 3018 12430017 12427592 0.000000e+00 2401.0
2 TraesCS7A01G030700 chr7A 85.698 1741 167 50 696 2412 12653025 12651343 0.000000e+00 1760.0
3 TraesCS7A01G030700 chr7A 92.647 272 15 3 3082 3350 9156132 9156401 1.460000e-103 387.0
4 TraesCS7A01G030700 chr7D 85.381 2442 228 85 696 3083 13098457 13096091 0.000000e+00 2412.0
5 TraesCS7A01G030700 chr7D 84.984 2504 191 77 639 3015 13029894 13027449 0.000000e+00 2370.0
6 TraesCS7A01G030700 chr7D 88.631 1337 104 28 1340 2649 13066911 13065596 0.000000e+00 1583.0
7 TraesCS7A01G030700 chr7D 87.517 729 39 22 638 1338 13067891 13067187 0.000000e+00 795.0
8 TraesCS7A01G030700 chr4A 85.392 2396 195 77 639 2953 724782282 724784603 0.000000e+00 2342.0
9 TraesCS7A01G030700 chr4A 84.615 1521 136 39 1402 2887 724399909 724398452 0.000000e+00 1423.0
10 TraesCS7A01G030700 chr4A 88.401 1138 90 16 996 2124 724580126 724579022 0.000000e+00 1332.0
11 TraesCS7A01G030700 chr4A 83.585 597 49 28 2506 3065 724578761 724578177 6.410000e-142 514.0
12 TraesCS7A01G030700 chr4A 92.857 280 20 0 996 1275 724400265 724399986 1.120000e-109 407.0
13 TraesCS7A01G030700 chr4A 92.391 276 17 3 3075 3350 312250569 312250298 1.130000e-104 390.0
14 TraesCS7A01G030700 chr4A 88.889 297 12 11 639 920 724400611 724400321 2.470000e-91 346.0
15 TraesCS7A01G030700 chr4A 87.097 155 15 2 2289 2443 724578904 724578755 1.600000e-38 171.0
16 TraesCS7A01G030700 chr4A 80.374 214 15 16 733 941 724580348 724580157 1.620000e-28 137.0
17 TraesCS7A01G030700 chr4D 85.033 2432 204 78 696 3013 506607452 506605067 0.000000e+00 2327.0
18 TraesCS7A01G030700 chr3B 91.601 631 45 3 7 636 32947773 32948396 0.000000e+00 865.0
19 TraesCS7A01G030700 chr6B 89.873 632 54 5 7 636 413935840 413936463 0.000000e+00 804.0
20 TraesCS7A01G030700 chr5D 87.805 533 49 9 68 599 28477410 28477927 7.950000e-171 610.0
21 TraesCS7A01G030700 chr1B 88.333 360 30 3 277 636 422558220 422557873 4.000000e-114 422.0
22 TraesCS7A01G030700 chr5A 92.058 277 18 3 3075 3350 6458155 6458428 1.460000e-103 387.0
23 TraesCS7A01G030700 chr5A 92.058 277 18 3 3075 3350 6466107 6466380 1.460000e-103 387.0
24 TraesCS7A01G030700 chr5A 87.037 54 7 0 586 639 624782782 624782729 1.000000e-05 62.1
25 TraesCS7A01G030700 chr6A 92.593 270 17 2 3082 3350 371705308 371705041 5.240000e-103 385.0
26 TraesCS7A01G030700 chr3D 92.565 269 18 1 3082 3350 484285184 484285450 5.240000e-103 385.0
27 TraesCS7A01G030700 chr3A 92.565 269 18 1 3082 3350 652031389 652031655 5.240000e-103 385.0
28 TraesCS7A01G030700 chr1A 92.565 269 17 2 3082 3350 82864788 82865053 1.890000e-102 383.0
29 TraesCS7A01G030700 chr5B 90.068 292 23 6 3062 3350 230012975 230013263 1.130000e-99 374.0
30 TraesCS7A01G030700 chr2A 90.789 76 5 2 1350 1424 607841872 607841798 2.130000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G030700 chr7A 12452994 12456343 3349 True 6187.000000 6187 100.00000 1 3350 1 chr7A.!!$R2 3349
1 TraesCS7A01G030700 chr7A 12427592 12430017 2425 True 2401.000000 2401 85.27200 649 3018 1 chr7A.!!$R1 2369
2 TraesCS7A01G030700 chr7A 12651343 12653025 1682 True 1760.000000 1760 85.69800 696 2412 1 chr7A.!!$R3 1716
3 TraesCS7A01G030700 chr7D 13096091 13098457 2366 True 2412.000000 2412 85.38100 696 3083 1 chr7D.!!$R2 2387
4 TraesCS7A01G030700 chr7D 13027449 13029894 2445 True 2370.000000 2370 84.98400 639 3015 1 chr7D.!!$R1 2376
5 TraesCS7A01G030700 chr7D 13065596 13067891 2295 True 1189.000000 1583 88.07400 638 2649 2 chr7D.!!$R3 2011
6 TraesCS7A01G030700 chr4A 724782282 724784603 2321 False 2342.000000 2342 85.39200 639 2953 1 chr4A.!!$F1 2314
7 TraesCS7A01G030700 chr4A 724398452 724400611 2159 True 725.333333 1423 88.78700 639 2887 3 chr4A.!!$R2 2248
8 TraesCS7A01G030700 chr4A 724578177 724580348 2171 True 538.500000 1332 84.86425 733 3065 4 chr4A.!!$R3 2332
9 TraesCS7A01G030700 chr4D 506605067 506607452 2385 True 2327.000000 2327 85.03300 696 3013 1 chr4D.!!$R1 2317
10 TraesCS7A01G030700 chr3B 32947773 32948396 623 False 865.000000 865 91.60100 7 636 1 chr3B.!!$F1 629
11 TraesCS7A01G030700 chr6B 413935840 413936463 623 False 804.000000 804 89.87300 7 636 1 chr6B.!!$F1 629
12 TraesCS7A01G030700 chr5D 28477410 28477927 517 False 610.000000 610 87.80500 68 599 1 chr5D.!!$F1 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
468 470 0.248825 AGATCAGCAACGCGAGCTAG 60.249 55.0 25.13 19.56 41.14 3.42 F
1276 1399 0.110823 CGGCAACAAGTAAGTCACGC 60.111 55.0 0.00 0.00 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1670 2076 0.107508 ATGAGGTTGTCCATGCCGAG 60.108 55.0 0.00 0.0 35.89 4.63 R
3237 3799 0.168128 GACGGCGGGTTGATTTCAAG 59.832 55.0 13.24 0.0 36.39 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.539827 GTCTGGGTCCAAATTTCGTGG 59.460 52.381 0.00 0.00 37.51 4.94
44 45 1.154169 CCGGACAACGTTCGATCGA 60.154 57.895 21.80 15.15 36.53 3.59
49 50 0.313043 ACAACGTTCGATCGACCTGT 59.687 50.000 19.26 14.94 34.70 4.00
51 52 0.879765 AACGTTCGATCGACCTGTCT 59.120 50.000 19.26 5.15 34.70 3.41
54 55 0.809385 GTTCGATCGACCTGTCTGGA 59.191 55.000 19.26 0.00 39.71 3.86
64 65 3.368843 CGACCTGTCTGGACATTTGAGAT 60.369 47.826 3.80 0.00 41.01 2.75
71 72 4.156739 GTCTGGACATTTGAGATGGGTTTC 59.843 45.833 0.00 0.00 0.00 2.78
76 77 3.075882 ACATTTGAGATGGGTTTCAGGGA 59.924 43.478 0.00 0.00 0.00 4.20
81 82 0.837272 GATGGGTTTCAGGGATCCGA 59.163 55.000 5.45 0.00 0.00 4.55
90 91 5.011738 GGTTTCAGGGATCCGATTGTAGATA 59.988 44.000 5.45 0.00 0.00 1.98
141 142 3.181501 GGAGCAAAAATACGTGCATGCTA 60.182 43.478 20.33 3.11 43.59 3.49
153 154 0.461135 GCATGCTAAATGTGGTGGGG 59.539 55.000 11.37 0.00 0.00 4.96
174 175 5.069119 GGGGCTGGTGGAATAAAAGAAATAG 59.931 44.000 0.00 0.00 0.00 1.73
213 214 4.941713 AGAGGAGACAATCACTAGAAGGT 58.058 43.478 0.00 0.00 0.00 3.50
233 235 2.556766 TCCCCATGTAGGACACATCAA 58.443 47.619 0.00 0.00 44.99 2.57
303 305 3.353600 TGGAAACGCCAGCATGTG 58.646 55.556 0.00 0.00 43.33 3.21
304 306 1.528076 TGGAAACGCCAGCATGTGT 60.528 52.632 0.00 0.00 43.33 3.72
305 307 1.210155 GGAAACGCCAGCATGTGTC 59.790 57.895 0.00 0.00 36.34 3.67
306 308 1.514678 GGAAACGCCAGCATGTGTCA 61.515 55.000 0.00 0.00 36.34 3.58
398 400 4.495844 GGTGTAAGCAATAGAAACGCCATC 60.496 45.833 0.00 0.00 39.86 3.51
400 402 3.764885 AAGCAATAGAAACGCCATCAC 57.235 42.857 0.00 0.00 0.00 3.06
440 442 1.376424 CACGTCAGCAAGGCCTGAT 60.376 57.895 5.69 0.00 43.19 2.90
441 443 3.494378 CGTCAGCAAGGCCTGATG 58.506 61.111 5.69 10.24 43.19 3.07
442 444 2.110967 CGTCAGCAAGGCCTGATGG 61.111 63.158 5.69 0.00 43.19 3.51
443 445 1.001641 GTCAGCAAGGCCTGATGGT 60.002 57.895 5.69 4.19 43.19 3.55
444 446 1.001764 TCAGCAAGGCCTGATGGTG 60.002 57.895 24.58 24.58 41.98 4.17
445 447 2.050350 CAGCAAGGCCTGATGGTGG 61.050 63.158 23.37 9.32 40.42 4.61
446 448 2.757099 GCAAGGCCTGATGGTGGG 60.757 66.667 5.69 0.00 35.27 4.61
457 459 2.934932 TGGTGGGCCAGATCAGCA 60.935 61.111 6.40 6.26 40.46 4.41
458 460 2.356278 GGTGGGCCAGATCAGCAA 59.644 61.111 6.40 0.00 34.09 3.91
459 461 2.048603 GGTGGGCCAGATCAGCAAC 61.049 63.158 6.40 7.05 34.09 4.17
460 462 2.046023 TGGGCCAGATCAGCAACG 60.046 61.111 0.00 0.00 0.00 4.10
461 463 3.512516 GGGCCAGATCAGCAACGC 61.513 66.667 4.39 0.00 0.00 4.84
462 464 3.869272 GGCCAGATCAGCAACGCG 61.869 66.667 3.53 3.53 0.00 6.01
463 465 2.815211 GCCAGATCAGCAACGCGA 60.815 61.111 15.93 0.00 0.00 5.87
464 466 2.806856 GCCAGATCAGCAACGCGAG 61.807 63.158 15.93 5.94 0.00 5.03
465 467 2.699809 CAGATCAGCAACGCGAGC 59.300 61.111 15.93 17.20 0.00 5.03
466 468 1.808799 CAGATCAGCAACGCGAGCT 60.809 57.895 21.44 21.44 44.62 4.09
467 469 0.526310 CAGATCAGCAACGCGAGCTA 60.526 55.000 25.13 16.03 41.14 3.32
468 470 0.248825 AGATCAGCAACGCGAGCTAG 60.249 55.000 25.13 19.56 41.14 3.42
469 471 1.816214 GATCAGCAACGCGAGCTAGC 61.816 60.000 25.13 6.62 41.14 3.42
470 472 2.290122 ATCAGCAACGCGAGCTAGCT 62.290 55.000 25.13 19.45 41.14 3.32
471 473 2.202676 AGCAACGCGAGCTAGCTC 60.203 61.111 31.12 31.12 41.32 4.09
472 474 2.507102 GCAACGCGAGCTAGCTCA 60.507 61.111 36.92 0.00 42.86 4.26
473 475 2.512301 GCAACGCGAGCTAGCTCAG 61.512 63.158 36.92 31.28 42.86 3.35
483 485 2.448726 GCTAGCTCAGCGTTTTCATG 57.551 50.000 7.70 0.00 41.37 3.07
484 486 2.002586 GCTAGCTCAGCGTTTTCATGA 58.997 47.619 7.70 0.00 41.37 3.07
485 487 2.030213 GCTAGCTCAGCGTTTTCATGAG 59.970 50.000 7.70 0.00 41.37 2.90
486 488 2.175878 AGCTCAGCGTTTTCATGAGT 57.824 45.000 0.00 0.00 41.99 3.41
487 489 2.498167 AGCTCAGCGTTTTCATGAGTT 58.502 42.857 0.00 0.00 41.99 3.01
488 490 2.225019 AGCTCAGCGTTTTCATGAGTTG 59.775 45.455 0.00 0.00 41.99 3.16
489 491 2.578495 CTCAGCGTTTTCATGAGTTGC 58.422 47.619 0.00 0.00 36.52 4.17
490 492 1.946081 TCAGCGTTTTCATGAGTTGCA 59.054 42.857 12.00 0.00 0.00 4.08
491 493 2.031769 TCAGCGTTTTCATGAGTTGCAG 60.032 45.455 12.00 5.95 0.00 4.41
492 494 1.055338 GCGTTTTCATGAGTTGCAGC 58.945 50.000 0.00 0.00 0.00 5.25
493 495 1.600164 GCGTTTTCATGAGTTGCAGCA 60.600 47.619 2.55 0.00 0.00 4.41
494 496 2.730069 CGTTTTCATGAGTTGCAGCAA 58.270 42.857 2.83 2.83 0.00 3.91
495 497 2.468777 CGTTTTCATGAGTTGCAGCAAC 59.531 45.455 28.02 28.02 43.83 4.17
502 504 4.017877 GTTGCAGCAACGCGAGCT 62.018 61.111 22.28 21.44 44.62 4.09
507 509 2.591715 AGCAACGCGAGCTGGTTT 60.592 55.556 25.04 5.76 41.61 3.27
508 510 2.427410 GCAACGCGAGCTGGTTTG 60.427 61.111 15.93 5.98 0.00 2.93
509 511 2.252260 CAACGCGAGCTGGTTTGG 59.748 61.111 15.93 0.00 0.00 3.28
510 512 3.660111 AACGCGAGCTGGTTTGGC 61.660 61.111 15.93 0.00 0.00 4.52
513 515 3.660111 GCGAGCTGGTTTGGCGTT 61.660 61.111 0.00 0.00 34.52 4.84
514 516 3.030652 CGAGCTGGTTTGGCGTTT 58.969 55.556 0.00 0.00 34.52 3.60
515 517 1.358759 CGAGCTGGTTTGGCGTTTT 59.641 52.632 0.00 0.00 34.52 2.43
516 518 0.660300 CGAGCTGGTTTGGCGTTTTC 60.660 55.000 0.00 0.00 34.52 2.29
517 519 0.383949 GAGCTGGTTTGGCGTTTTCA 59.616 50.000 0.00 0.00 34.52 2.69
518 520 1.000274 GAGCTGGTTTGGCGTTTTCAT 60.000 47.619 0.00 0.00 34.52 2.57
519 521 2.227865 GAGCTGGTTTGGCGTTTTCATA 59.772 45.455 0.00 0.00 34.52 2.15
520 522 2.825532 AGCTGGTTTGGCGTTTTCATAT 59.174 40.909 0.00 0.00 34.52 1.78
521 523 2.923020 GCTGGTTTGGCGTTTTCATATG 59.077 45.455 0.00 0.00 0.00 1.78
522 524 3.510719 CTGGTTTGGCGTTTTCATATGG 58.489 45.455 2.13 0.00 0.00 2.74
523 525 3.157881 TGGTTTGGCGTTTTCATATGGA 58.842 40.909 2.13 0.00 0.00 3.41
524 526 3.192422 TGGTTTGGCGTTTTCATATGGAG 59.808 43.478 2.13 0.00 0.00 3.86
525 527 3.442273 GGTTTGGCGTTTTCATATGGAGA 59.558 43.478 2.13 0.00 0.00 3.71
526 528 4.082463 GGTTTGGCGTTTTCATATGGAGAA 60.082 41.667 2.13 0.00 0.00 2.87
527 529 4.963276 TTGGCGTTTTCATATGGAGAAG 57.037 40.909 2.13 0.00 0.00 2.85
528 530 2.682856 TGGCGTTTTCATATGGAGAAGC 59.317 45.455 4.14 4.14 0.00 3.86
529 531 2.682856 GGCGTTTTCATATGGAGAAGCA 59.317 45.455 13.24 0.00 0.00 3.91
530 532 3.128589 GGCGTTTTCATATGGAGAAGCAA 59.871 43.478 13.24 0.00 0.00 3.91
531 533 4.202050 GGCGTTTTCATATGGAGAAGCAAT 60.202 41.667 13.24 0.00 0.00 3.56
532 534 4.736793 GCGTTTTCATATGGAGAAGCAATG 59.263 41.667 7.46 0.00 0.00 2.82
533 535 5.677091 GCGTTTTCATATGGAGAAGCAATGT 60.677 40.000 7.46 0.00 0.00 2.71
534 536 5.967674 CGTTTTCATATGGAGAAGCAATGTC 59.032 40.000 2.13 0.00 0.00 3.06
535 537 6.403527 CGTTTTCATATGGAGAAGCAATGTCA 60.404 38.462 2.13 0.00 0.00 3.58
536 538 6.441093 TTTCATATGGAGAAGCAATGTCAC 57.559 37.500 2.13 0.00 0.00 3.67
537 539 4.122046 TCATATGGAGAAGCAATGTCACG 58.878 43.478 2.13 0.00 0.00 4.35
538 540 1.742761 ATGGAGAAGCAATGTCACGG 58.257 50.000 0.00 0.00 0.00 4.94
539 541 0.321564 TGGAGAAGCAATGTCACGGG 60.322 55.000 0.00 0.00 0.00 5.28
540 542 1.648467 GGAGAAGCAATGTCACGGGC 61.648 60.000 0.00 0.00 0.00 6.13
541 543 0.674895 GAGAAGCAATGTCACGGGCT 60.675 55.000 0.00 0.00 38.45 5.19
542 544 0.957395 AGAAGCAATGTCACGGGCTG 60.957 55.000 0.00 0.00 36.58 4.85
543 545 1.228245 AAGCAATGTCACGGGCTGT 60.228 52.632 0.00 0.00 36.58 4.40
551 553 4.025401 CACGGGCTGTGGCGTTTC 62.025 66.667 18.87 0.00 45.21 2.78
552 554 4.250305 ACGGGCTGTGGCGTTTCT 62.250 61.111 0.00 0.00 39.81 2.52
553 555 2.047655 CGGGCTGTGGCGTTTCTA 60.048 61.111 0.00 0.00 39.81 2.10
554 556 1.669760 CGGGCTGTGGCGTTTCTAA 60.670 57.895 0.00 0.00 39.81 2.10
555 557 1.231958 CGGGCTGTGGCGTTTCTAAA 61.232 55.000 0.00 0.00 39.81 1.85
556 558 0.955905 GGGCTGTGGCGTTTCTAAAA 59.044 50.000 0.00 0.00 39.81 1.52
557 559 1.338655 GGGCTGTGGCGTTTCTAAAAA 59.661 47.619 0.00 0.00 39.81 1.94
599 601 8.061125 AGTTTTATTTCGAGTTCATTTTGTGC 57.939 30.769 0.00 0.00 0.00 4.57
600 602 6.667981 TTTATTTCGAGTTCATTTTGTGCG 57.332 33.333 0.00 0.00 0.00 5.34
601 603 3.953874 TTTCGAGTTCATTTTGTGCGA 57.046 38.095 0.00 0.00 0.00 5.10
602 604 3.953874 TTCGAGTTCATTTTGTGCGAA 57.046 38.095 0.00 0.00 34.44 4.70
603 605 3.519908 TCGAGTTCATTTTGTGCGAAG 57.480 42.857 0.00 0.00 0.00 3.79
604 606 3.127589 TCGAGTTCATTTTGTGCGAAGA 58.872 40.909 0.00 0.00 0.00 2.87
605 607 3.745975 TCGAGTTCATTTTGTGCGAAGAT 59.254 39.130 0.00 0.00 0.00 2.40
606 608 4.213270 TCGAGTTCATTTTGTGCGAAGATT 59.787 37.500 0.00 0.00 0.00 2.40
607 609 4.911610 CGAGTTCATTTTGTGCGAAGATTT 59.088 37.500 0.00 0.00 0.00 2.17
608 610 5.399301 CGAGTTCATTTTGTGCGAAGATTTT 59.601 36.000 0.00 0.00 0.00 1.82
609 611 6.397894 CGAGTTCATTTTGTGCGAAGATTTTC 60.398 38.462 0.00 0.00 0.00 2.29
610 612 6.507023 AGTTCATTTTGTGCGAAGATTTTCT 58.493 32.000 0.00 0.00 0.00 2.52
611 613 6.418819 AGTTCATTTTGTGCGAAGATTTTCTG 59.581 34.615 0.00 0.00 0.00 3.02
612 614 6.070897 TCATTTTGTGCGAAGATTTTCTGA 57.929 33.333 0.00 0.00 0.00 3.27
613 615 5.914635 TCATTTTGTGCGAAGATTTTCTGAC 59.085 36.000 0.00 0.00 0.00 3.51
614 616 4.891627 TTTGTGCGAAGATTTTCTGACA 57.108 36.364 0.00 0.00 0.00 3.58
615 617 4.891627 TTGTGCGAAGATTTTCTGACAA 57.108 36.364 5.89 5.89 0.00 3.18
616 618 4.472691 TGTGCGAAGATTTTCTGACAAG 57.527 40.909 0.00 0.00 0.00 3.16
617 619 3.250762 TGTGCGAAGATTTTCTGACAAGG 59.749 43.478 0.00 0.00 0.00 3.61
618 620 3.251004 GTGCGAAGATTTTCTGACAAGGT 59.749 43.478 0.00 0.00 0.00 3.50
619 621 3.498397 TGCGAAGATTTTCTGACAAGGTC 59.502 43.478 0.00 0.00 0.00 3.85
620 622 3.498397 GCGAAGATTTTCTGACAAGGTCA 59.502 43.478 0.00 0.00 40.50 4.02
634 636 5.869344 TGACAAGGTCAGAATAGTGATTTCG 59.131 40.000 0.00 0.00 37.67 3.46
635 637 5.178797 ACAAGGTCAGAATAGTGATTTCGG 58.821 41.667 0.00 0.00 0.00 4.30
636 638 5.178797 CAAGGTCAGAATAGTGATTTCGGT 58.821 41.667 0.00 0.00 0.00 4.69
637 639 5.012328 AGGTCAGAATAGTGATTTCGGTC 57.988 43.478 0.00 0.00 0.00 4.79
647 649 3.442273 AGTGATTTCGGTCAGAGAGAGAC 59.558 47.826 0.00 0.00 35.29 3.36
698 708 2.372172 GAGAGGTCCCTAGAGAGAGAGG 59.628 59.091 0.00 0.00 0.00 3.69
882 968 6.881570 TCTAAACCCTTCTCTATAAAACCCG 58.118 40.000 0.00 0.00 0.00 5.28
886 972 3.381949 CCTTCTCTATAAAACCCGCTCG 58.618 50.000 0.00 0.00 0.00 5.03
972 1095 7.866729 ACAAAGAAAAAGAAGAAGCTAGCTAC 58.133 34.615 19.70 10.07 0.00 3.58
973 1096 7.717436 ACAAAGAAAAAGAAGAAGCTAGCTACT 59.283 33.333 19.70 12.19 0.00 2.57
974 1097 9.209175 CAAAGAAAAAGAAGAAGCTAGCTACTA 57.791 33.333 19.70 0.00 0.00 1.82
975 1098 8.996024 AAGAAAAAGAAGAAGCTAGCTACTAG 57.004 34.615 19.70 0.00 37.16 2.57
999 1122 2.168496 AGCTAGTCGTTTAGTGGAGCA 58.832 47.619 0.00 0.00 0.00 4.26
1010 1133 3.978193 TGGAGCAATGGGGCGGTT 61.978 61.111 0.00 0.00 39.27 4.44
1082 1205 2.674380 GGACAAGCTGCTGGTGGG 60.674 66.667 15.75 0.00 0.00 4.61
1276 1399 0.110823 CGGCAACAAGTAAGTCACGC 60.111 55.000 0.00 0.00 0.00 5.34
1279 1402 1.136611 GCAACAAGTAAGTCACGCTCG 60.137 52.381 0.00 0.00 0.00 5.03
1338 1470 2.421952 CGGTGACTGATGGATTGGGATT 60.422 50.000 0.00 0.00 0.00 3.01
1938 2386 0.734889 GTTGATCGAATGGTGGCCAG 59.265 55.000 5.11 0.00 36.75 4.85
1987 2435 2.964925 GGTGTGTCGTGCGAGCAA 60.965 61.111 0.00 0.00 0.00 3.91
2041 2489 1.489649 AGCCTGAACCTGATGGATGAG 59.510 52.381 0.00 0.00 37.04 2.90
2092 2540 2.685522 GCTAGAGTGAGTACCTGCTCCT 60.686 54.545 0.00 0.00 34.74 3.69
2113 2566 7.387397 GCTCCTATTCCATCAACTTTCTATCAG 59.613 40.741 0.00 0.00 0.00 2.90
2160 2625 1.527311 GTCTGCACGTCTCTTTTCCAC 59.473 52.381 0.00 0.00 0.00 4.02
2161 2626 1.138069 TCTGCACGTCTCTTTTCCACA 59.862 47.619 0.00 0.00 0.00 4.17
2173 2639 4.230455 TCTTTTCCACATCCACCCAAATT 58.770 39.130 0.00 0.00 0.00 1.82
2248 2731 8.327271 TCCTAACTTCTAGTTCAACTAGCTAGA 58.673 37.037 27.45 8.17 45.93 2.43
2262 2746 7.928706 TCAACTAGCTAGATCTTTTTATCAGGC 59.071 37.037 27.45 0.00 0.00 4.85
2267 2751 7.938715 AGCTAGATCTTTTTATCAGGCAAATG 58.061 34.615 0.00 0.00 32.07 2.32
2268 2752 7.559170 AGCTAGATCTTTTTATCAGGCAAATGT 59.441 33.333 0.00 0.00 32.07 2.71
2269 2753 7.859875 GCTAGATCTTTTTATCAGGCAAATGTC 59.140 37.037 0.00 0.00 0.00 3.06
2283 2774 7.123098 TCAGGCAAATGTCATGATTAATTCTGT 59.877 33.333 0.00 0.00 0.00 3.41
2406 2901 6.835488 CCAAAAATAATCAGGAAGGAGATGGA 59.165 38.462 0.00 0.00 0.00 3.41
2407 2902 7.014038 CCAAAAATAATCAGGAAGGAGATGGAG 59.986 40.741 0.00 0.00 0.00 3.86
2408 2903 7.457380 AAAATAATCAGGAAGGAGATGGAGA 57.543 36.000 0.00 0.00 0.00 3.71
2409 2904 6.432403 AATAATCAGGAAGGAGATGGAGAC 57.568 41.667 0.00 0.00 0.00 3.36
2410 2905 3.704545 ATCAGGAAGGAGATGGAGACT 57.295 47.619 0.00 0.00 0.00 3.24
2525 3025 6.223852 AGTCCACACTTTTAGACATGTACAG 58.776 40.000 0.00 0.00 0.00 2.74
2572 3080 6.875948 ATGTACACACTCACTGCAATTAAA 57.124 33.333 0.00 0.00 0.00 1.52
2582 3091 8.482429 CACTCACTGCAATTAAAGTTCATTTTC 58.518 33.333 0.00 0.00 32.01 2.29
2660 3176 4.823989 AGCTTGTGACATAAAAGCACTTCT 59.176 37.500 17.52 0.68 46.94 2.85
2672 3195 3.194005 AGCACTTCTCTTTTCGGACAA 57.806 42.857 0.00 0.00 0.00 3.18
2680 3203 5.978934 TCTCTTTTCGGACAACAAAGTAC 57.021 39.130 1.17 0.00 0.00 2.73
2684 3207 1.210870 TCGGACAACAAAGTACGTGC 58.789 50.000 0.00 0.00 45.81 5.34
2685 3208 0.111442 CGGACAACAAAGTACGTGCG 60.111 55.000 0.00 0.00 40.88 5.34
2686 3209 0.932399 GGACAACAAAGTACGTGCGT 59.068 50.000 0.00 2.05 0.00 5.24
2687 3210 1.332552 GGACAACAAAGTACGTGCGTG 60.333 52.381 7.55 3.35 0.00 5.34
2688 3211 1.589320 GACAACAAAGTACGTGCGTGA 59.411 47.619 15.15 0.00 0.00 4.35
2689 3212 1.325338 ACAACAAAGTACGTGCGTGAC 59.675 47.619 15.15 0.00 0.00 3.67
2702 3225 1.949133 CGTGACGGTGTGAGTGTGG 60.949 63.158 0.00 0.00 0.00 4.17
2743 3273 3.763097 TTCTTGACGCTTGCATTATGG 57.237 42.857 0.00 0.00 0.00 2.74
2798 3328 0.793250 GCGTGAAGAAGCTCAACTCC 59.207 55.000 0.00 0.00 0.00 3.85
2803 3333 1.000955 GAAGAAGCTCAACTCCGGTCA 59.999 52.381 0.00 0.00 0.00 4.02
2821 3351 5.276270 CGGTCATCATTTGATTGGATTGTC 58.724 41.667 0.00 0.00 36.54 3.18
2825 3355 7.767198 GGTCATCATTTGATTGGATTGTCATTT 59.233 33.333 0.00 0.00 36.54 2.32
2869 3407 4.202357 TGTGTCCAGCATTAGTCTTCACTT 60.202 41.667 0.00 0.00 33.62 3.16
2884 3423 6.881602 AGTCTTCACTTTAATCAATCTCCCAC 59.118 38.462 0.00 0.00 0.00 4.61
2932 3481 4.039366 TGGCTACGTACATATGCATGGTTA 59.961 41.667 10.16 0.00 36.39 2.85
2933 3482 4.625742 GGCTACGTACATATGCATGGTTAG 59.374 45.833 10.16 7.62 36.39 2.34
2935 3484 6.384224 GCTACGTACATATGCATGGTTAGTA 58.616 40.000 10.16 12.84 36.39 1.82
2936 3485 6.527023 GCTACGTACATATGCATGGTTAGTAG 59.473 42.308 24.01 24.01 36.39 2.57
2937 3486 5.779922 ACGTACATATGCATGGTTAGTAGG 58.220 41.667 10.16 11.82 36.39 3.18
3080 3642 9.362539 AGAAATGTTTCATGCAATCTTATGTTC 57.637 29.630 8.09 0.00 39.61 3.18
3081 3643 9.142515 GAAATGTTTCATGCAATCTTATGTTCA 57.857 29.630 0.00 0.00 37.15 3.18
3082 3644 9.661563 AAATGTTTCATGCAATCTTATGTTCAT 57.338 25.926 0.00 0.00 0.00 2.57
3083 3645 8.867112 ATGTTTCATGCAATCTTATGTTCATC 57.133 30.769 0.00 0.00 0.00 2.92
3084 3646 8.058667 TGTTTCATGCAATCTTATGTTCATCT 57.941 30.769 0.00 0.00 0.00 2.90
3085 3647 8.525316 TGTTTCATGCAATCTTATGTTCATCTT 58.475 29.630 0.00 0.00 0.00 2.40
3086 3648 9.362539 GTTTCATGCAATCTTATGTTCATCTTT 57.637 29.630 0.00 0.00 0.00 2.52
3089 3651 8.623903 TCATGCAATCTTATGTTCATCTTTACC 58.376 33.333 0.00 0.00 0.00 2.85
3090 3652 8.627403 CATGCAATCTTATGTTCATCTTTACCT 58.373 33.333 0.00 0.00 0.00 3.08
3091 3653 9.851686 ATGCAATCTTATGTTCATCTTTACCTA 57.148 29.630 0.00 0.00 0.00 3.08
3092 3654 9.851686 TGCAATCTTATGTTCATCTTTACCTAT 57.148 29.630 0.00 0.00 0.00 2.57
3122 3684 8.965986 ATAAAGCAAATTAGGTTTCTTTCGTC 57.034 30.769 0.00 0.00 39.62 4.20
3123 3685 6.635030 AAGCAAATTAGGTTTCTTTCGTCT 57.365 33.333 0.00 0.00 0.00 4.18
3124 3686 6.002062 AGCAAATTAGGTTTCTTTCGTCTG 57.998 37.500 0.00 0.00 0.00 3.51
3125 3687 5.531287 AGCAAATTAGGTTTCTTTCGTCTGT 59.469 36.000 0.00 0.00 0.00 3.41
3126 3688 5.851703 GCAAATTAGGTTTCTTTCGTCTGTC 59.148 40.000 0.00 0.00 0.00 3.51
3127 3689 6.512741 GCAAATTAGGTTTCTTTCGTCTGTCA 60.513 38.462 0.00 0.00 0.00 3.58
3128 3690 7.584987 CAAATTAGGTTTCTTTCGTCTGTCAT 58.415 34.615 0.00 0.00 0.00 3.06
3129 3691 6.727824 ATTAGGTTTCTTTCGTCTGTCATG 57.272 37.500 0.00 0.00 0.00 3.07
3130 3692 3.403038 AGGTTTCTTTCGTCTGTCATGG 58.597 45.455 0.00 0.00 0.00 3.66
3131 3693 2.095718 GGTTTCTTTCGTCTGTCATGGC 60.096 50.000 0.00 0.00 0.00 4.40
3132 3694 2.542020 TTCTTTCGTCTGTCATGGCA 57.458 45.000 0.00 0.00 0.00 4.92
3133 3695 2.768253 TCTTTCGTCTGTCATGGCAT 57.232 45.000 0.00 0.00 0.00 4.40
3134 3696 3.057969 TCTTTCGTCTGTCATGGCATT 57.942 42.857 0.00 0.00 0.00 3.56
3135 3697 3.411446 TCTTTCGTCTGTCATGGCATTT 58.589 40.909 0.00 0.00 0.00 2.32
3136 3698 3.820467 TCTTTCGTCTGTCATGGCATTTT 59.180 39.130 0.00 0.00 0.00 1.82
3137 3699 4.278170 TCTTTCGTCTGTCATGGCATTTTT 59.722 37.500 0.00 0.00 0.00 1.94
3138 3700 3.829886 TCGTCTGTCATGGCATTTTTC 57.170 42.857 0.00 0.00 0.00 2.29
3139 3701 3.145286 TCGTCTGTCATGGCATTTTTCA 58.855 40.909 0.00 0.00 0.00 2.69
3140 3702 3.567585 TCGTCTGTCATGGCATTTTTCAA 59.432 39.130 0.00 0.00 0.00 2.69
3141 3703 4.037327 TCGTCTGTCATGGCATTTTTCAAA 59.963 37.500 0.00 0.00 0.00 2.69
3142 3704 4.744137 CGTCTGTCATGGCATTTTTCAAAA 59.256 37.500 0.00 0.00 0.00 2.44
3143 3705 5.233902 CGTCTGTCATGGCATTTTTCAAAAA 59.766 36.000 0.00 0.00 0.00 1.94
3174 3736 6.778821 TCTATTTCAGAGAATTCAACCCACA 58.221 36.000 8.44 0.00 0.00 4.17
3175 3737 5.972107 ATTTCAGAGAATTCAACCCACAG 57.028 39.130 8.44 0.00 0.00 3.66
3176 3738 4.437682 TTCAGAGAATTCAACCCACAGT 57.562 40.909 8.44 0.00 0.00 3.55
3177 3739 4.437682 TCAGAGAATTCAACCCACAGTT 57.562 40.909 8.44 0.00 40.16 3.16
3178 3740 5.560722 TCAGAGAATTCAACCCACAGTTA 57.439 39.130 8.44 0.00 36.18 2.24
3179 3741 6.126863 TCAGAGAATTCAACCCACAGTTAT 57.873 37.500 8.44 0.00 36.18 1.89
3180 3742 5.939883 TCAGAGAATTCAACCCACAGTTATG 59.060 40.000 8.44 0.00 36.18 1.90
3181 3743 5.707298 CAGAGAATTCAACCCACAGTTATGT 59.293 40.000 8.44 0.00 41.57 2.29
3182 3744 6.207417 CAGAGAATTCAACCCACAGTTATGTT 59.793 38.462 8.44 0.00 37.65 2.71
3183 3745 6.777580 AGAGAATTCAACCCACAGTTATGTTT 59.222 34.615 8.44 0.00 37.65 2.83
3184 3746 7.287696 AGAGAATTCAACCCACAGTTATGTTTT 59.712 33.333 8.44 0.00 37.65 2.43
3185 3747 8.472007 AGAATTCAACCCACAGTTATGTTTTA 57.528 30.769 8.44 0.00 37.65 1.52
3186 3748 8.919145 AGAATTCAACCCACAGTTATGTTTTAA 58.081 29.630 8.44 0.00 37.65 1.52
3187 3749 9.191995 GAATTCAACCCACAGTTATGTTTTAAG 57.808 33.333 0.00 0.00 37.65 1.85
3188 3750 7.648039 TTCAACCCACAGTTATGTTTTAAGT 57.352 32.000 0.00 0.00 37.65 2.24
3189 3751 7.648039 TCAACCCACAGTTATGTTTTAAGTT 57.352 32.000 0.00 0.00 37.65 2.66
3190 3752 8.749026 TCAACCCACAGTTATGTTTTAAGTTA 57.251 30.769 0.00 0.00 37.65 2.24
3191 3753 9.186837 TCAACCCACAGTTATGTTTTAAGTTAA 57.813 29.630 0.00 0.00 37.65 2.01
3192 3754 9.804758 CAACCCACAGTTATGTTTTAAGTTAAA 57.195 29.630 3.88 3.88 37.65 1.52
3231 3793 8.851541 TTCGTATTTTATACAAAAGTCCCTGT 57.148 30.769 0.00 0.00 37.08 4.00
3232 3794 8.483307 TCGTATTTTATACAAAAGTCCCTGTC 57.517 34.615 0.00 0.00 37.08 3.51
3233 3795 8.316214 TCGTATTTTATACAAAAGTCCCTGTCT 58.684 33.333 0.00 0.00 37.08 3.41
3234 3796 8.943002 CGTATTTTATACAAAAGTCCCTGTCTT 58.057 33.333 0.00 0.00 37.08 3.01
3238 3800 8.990163 TTTATACAAAAGTCCCTGTCTTTTCT 57.010 30.769 0.00 0.00 41.30 2.52
3239 3801 8.990163 TTATACAAAAGTCCCTGTCTTTTCTT 57.010 30.769 0.00 0.00 41.30 2.52
3240 3802 5.582689 ACAAAAGTCCCTGTCTTTTCTTG 57.417 39.130 0.00 0.00 41.30 3.02
3241 3803 5.261216 ACAAAAGTCCCTGTCTTTTCTTGA 58.739 37.500 0.00 0.00 41.30 3.02
3242 3804 5.714806 ACAAAAGTCCCTGTCTTTTCTTGAA 59.285 36.000 0.00 0.00 41.30 2.69
3243 3805 6.210584 ACAAAAGTCCCTGTCTTTTCTTGAAA 59.789 34.615 0.00 0.00 41.30 2.69
3244 3806 7.093333 ACAAAAGTCCCTGTCTTTTCTTGAAAT 60.093 33.333 0.00 0.00 41.30 2.17
3245 3807 6.641169 AAGTCCCTGTCTTTTCTTGAAATC 57.359 37.500 0.00 0.00 0.00 2.17
3246 3808 5.694995 AGTCCCTGTCTTTTCTTGAAATCA 58.305 37.500 0.00 0.00 0.00 2.57
3247 3809 6.129179 AGTCCCTGTCTTTTCTTGAAATCAA 58.871 36.000 0.00 0.00 0.00 2.57
3248 3810 6.039829 AGTCCCTGTCTTTTCTTGAAATCAAC 59.960 38.462 0.00 0.00 0.00 3.18
3249 3811 5.301805 TCCCTGTCTTTTCTTGAAATCAACC 59.698 40.000 0.00 0.00 0.00 3.77
3250 3812 5.509670 CCCTGTCTTTTCTTGAAATCAACCC 60.510 44.000 0.00 0.00 0.00 4.11
3251 3813 5.181690 TGTCTTTTCTTGAAATCAACCCG 57.818 39.130 0.00 0.00 0.00 5.28
3252 3814 3.981416 GTCTTTTCTTGAAATCAACCCGC 59.019 43.478 0.00 0.00 0.00 6.13
3253 3815 3.005367 TCTTTTCTTGAAATCAACCCGCC 59.995 43.478 0.00 0.00 0.00 6.13
3254 3816 0.878416 TTCTTGAAATCAACCCGCCG 59.122 50.000 0.00 0.00 0.00 6.46
3255 3817 0.250553 TCTTGAAATCAACCCGCCGT 60.251 50.000 0.00 0.00 0.00 5.68
3256 3818 0.168128 CTTGAAATCAACCCGCCGTC 59.832 55.000 0.00 0.00 0.00 4.79
3257 3819 1.238625 TTGAAATCAACCCGCCGTCC 61.239 55.000 0.00 0.00 0.00 4.79
3258 3820 2.744709 AAATCAACCCGCCGTCCG 60.745 61.111 0.00 0.00 0.00 4.79
3267 3829 4.507879 CGCCGTCCGGATTTAAGT 57.492 55.556 7.81 0.00 37.50 2.24
3268 3830 2.294728 CGCCGTCCGGATTTAAGTC 58.705 57.895 7.81 0.00 37.50 3.01
3269 3831 0.458889 CGCCGTCCGGATTTAAGTCA 60.459 55.000 7.81 0.00 37.50 3.41
3270 3832 1.004595 GCCGTCCGGATTTAAGTCAC 58.995 55.000 7.81 0.00 37.50 3.67
3271 3833 1.673626 GCCGTCCGGATTTAAGTCACA 60.674 52.381 7.81 0.00 37.50 3.58
3272 3834 1.997606 CCGTCCGGATTTAAGTCACAC 59.002 52.381 7.81 0.00 37.50 3.82
3273 3835 2.353406 CCGTCCGGATTTAAGTCACACT 60.353 50.000 7.81 0.00 37.50 3.55
3274 3836 2.921754 CGTCCGGATTTAAGTCACACTC 59.078 50.000 7.81 0.00 0.00 3.51
3275 3837 3.613193 CGTCCGGATTTAAGTCACACTCA 60.613 47.826 7.81 0.00 0.00 3.41
3276 3838 4.312443 GTCCGGATTTAAGTCACACTCAA 58.688 43.478 7.81 0.00 0.00 3.02
3277 3839 4.753107 GTCCGGATTTAAGTCACACTCAAA 59.247 41.667 7.81 0.00 0.00 2.69
3278 3840 4.753107 TCCGGATTTAAGTCACACTCAAAC 59.247 41.667 0.00 0.00 0.00 2.93
3279 3841 4.083484 CCGGATTTAAGTCACACTCAAACC 60.083 45.833 0.00 0.00 0.00 3.27
3280 3842 4.377022 CGGATTTAAGTCACACTCAAACCG 60.377 45.833 0.03 0.00 33.61 4.44
3281 3843 4.514066 GGATTTAAGTCACACTCAAACCGT 59.486 41.667 0.03 0.00 0.00 4.83
3282 3844 5.008316 GGATTTAAGTCACACTCAAACCGTT 59.992 40.000 0.03 0.00 0.00 4.44
3283 3845 6.203338 GGATTTAAGTCACACTCAAACCGTTA 59.797 38.462 0.03 0.00 0.00 3.18
3284 3846 7.094933 GGATTTAAGTCACACTCAAACCGTTAT 60.095 37.037 0.03 0.00 0.00 1.89
3285 3847 7.556733 TTTAAGTCACACTCAAACCGTTATT 57.443 32.000 0.00 0.00 0.00 1.40
3286 3848 7.556733 TTAAGTCACACTCAAACCGTTATTT 57.443 32.000 0.00 0.00 0.00 1.40
3287 3849 6.445357 AAGTCACACTCAAACCGTTATTTT 57.555 33.333 0.00 0.00 0.00 1.82
3288 3850 7.556733 AAGTCACACTCAAACCGTTATTTTA 57.443 32.000 0.00 0.00 0.00 1.52
3289 3851 6.951643 AGTCACACTCAAACCGTTATTTTAC 58.048 36.000 0.00 0.00 0.00 2.01
3290 3852 6.539464 AGTCACACTCAAACCGTTATTTTACA 59.461 34.615 0.00 0.00 0.00 2.41
3291 3853 7.227910 AGTCACACTCAAACCGTTATTTTACAT 59.772 33.333 0.00 0.00 0.00 2.29
3292 3854 7.858879 GTCACACTCAAACCGTTATTTTACATT 59.141 33.333 0.00 0.00 0.00 2.71
3293 3855 8.407064 TCACACTCAAACCGTTATTTTACATTT 58.593 29.630 0.00 0.00 0.00 2.32
3294 3856 9.026074 CACACTCAAACCGTTATTTTACATTTT 57.974 29.630 0.00 0.00 0.00 1.82
3295 3857 9.589111 ACACTCAAACCGTTATTTTACATTTTT 57.411 25.926 0.00 0.00 0.00 1.94
3297 3859 9.804758 ACTCAAACCGTTATTTTACATTTTTCA 57.195 25.926 0.00 0.00 0.00 2.69
3329 3891 7.553881 ACTGATGTTTTAGGTAATTCATCCG 57.446 36.000 0.00 0.00 33.20 4.18
3330 3892 6.038271 ACTGATGTTTTAGGTAATTCATCCGC 59.962 38.462 0.00 0.00 33.20 5.54
3331 3893 5.883115 TGATGTTTTAGGTAATTCATCCGCA 59.117 36.000 0.00 0.00 33.20 5.69
3332 3894 5.811399 TGTTTTAGGTAATTCATCCGCAG 57.189 39.130 0.00 0.00 0.00 5.18
3333 3895 5.492895 TGTTTTAGGTAATTCATCCGCAGA 58.507 37.500 0.00 0.00 0.00 4.26
3334 3896 6.119536 TGTTTTAGGTAATTCATCCGCAGAT 58.880 36.000 0.00 0.00 0.00 2.90
3335 3897 6.260050 TGTTTTAGGTAATTCATCCGCAGATC 59.740 38.462 0.00 0.00 0.00 2.75
3336 3898 5.545063 TTAGGTAATTCATCCGCAGATCA 57.455 39.130 0.00 0.00 0.00 2.92
3337 3899 4.630644 AGGTAATTCATCCGCAGATCAT 57.369 40.909 0.00 0.00 0.00 2.45
3338 3900 5.745312 AGGTAATTCATCCGCAGATCATA 57.255 39.130 0.00 0.00 0.00 2.15
3339 3901 6.305272 AGGTAATTCATCCGCAGATCATAT 57.695 37.500 0.00 0.00 0.00 1.78
3340 3902 6.715280 AGGTAATTCATCCGCAGATCATATT 58.285 36.000 0.00 0.00 0.00 1.28
3341 3903 7.170965 AGGTAATTCATCCGCAGATCATATTT 58.829 34.615 0.00 0.00 0.00 1.40
3342 3904 8.321353 AGGTAATTCATCCGCAGATCATATTTA 58.679 33.333 0.00 0.00 0.00 1.40
3343 3905 8.946085 GGTAATTCATCCGCAGATCATATTTAA 58.054 33.333 0.00 0.00 0.00 1.52
3344 3906 9.979270 GTAATTCATCCGCAGATCATATTTAAG 57.021 33.333 0.00 0.00 0.00 1.85
3345 3907 8.627208 AATTCATCCGCAGATCATATTTAAGT 57.373 30.769 0.00 0.00 0.00 2.24
3346 3908 7.658179 TTCATCCGCAGATCATATTTAAGTC 57.342 36.000 0.00 0.00 0.00 3.01
3347 3909 6.758254 TCATCCGCAGATCATATTTAAGTCA 58.242 36.000 0.00 0.00 0.00 3.41
3348 3910 7.216494 TCATCCGCAGATCATATTTAAGTCAA 58.784 34.615 0.00 0.00 0.00 3.18
3349 3911 7.714813 TCATCCGCAGATCATATTTAAGTCAAA 59.285 33.333 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.075355 AATTTGGACCCAGACCCGCA 62.075 55.000 0.00 0.00 0.00 5.69
2 3 1.173913 GAAATTTGGACCCAGACCCG 58.826 55.000 0.00 0.00 0.00 5.28
5 6 1.539827 CCACGAAATTTGGACCCAGAC 59.460 52.381 7.24 0.00 36.02 3.51
25 26 2.785105 CGATCGAACGTTGTCCGGC 61.785 63.158 10.26 0.00 42.24 6.13
44 45 3.307975 CCATCTCAAATGTCCAGACAGGT 60.308 47.826 6.63 0.00 45.48 4.00
49 50 4.202556 TGAAACCCATCTCAAATGTCCAGA 60.203 41.667 0.00 0.00 0.00 3.86
51 52 4.081406 CTGAAACCCATCTCAAATGTCCA 58.919 43.478 0.00 0.00 0.00 4.02
54 55 3.075882 TCCCTGAAACCCATCTCAAATGT 59.924 43.478 0.00 0.00 0.00 2.71
64 65 1.064758 CAATCGGATCCCTGAAACCCA 60.065 52.381 6.06 0.00 0.00 4.51
71 72 5.317733 GAGTATCTACAATCGGATCCCTG 57.682 47.826 6.06 3.84 0.00 4.45
109 110 7.250569 CACGTATTTTTGCTCCTTTCACATAT 58.749 34.615 0.00 0.00 0.00 1.78
141 142 1.533753 CACCAGCCCCACCACATTT 60.534 57.895 0.00 0.00 0.00 2.32
174 175 7.039270 GTCTCCTCTCTTCTTCAGGTTTATTC 58.961 42.308 0.00 0.00 0.00 1.75
233 235 6.735130 GGTTTGATGTGTACAAAGCTTACTT 58.265 36.000 0.00 0.00 45.80 2.24
302 304 8.951243 TGTTTATTTTATTCCGATGACATGACA 58.049 29.630 0.00 0.00 0.00 3.58
303 305 9.781834 TTGTTTATTTTATTCCGATGACATGAC 57.218 29.630 0.00 0.00 0.00 3.06
373 375 3.377172 GGCGTTTCTATTGCTTACACCAT 59.623 43.478 0.00 0.00 0.00 3.55
398 400 2.908073 GCAGGAAACGCCACAGGTG 61.908 63.158 0.00 0.00 40.02 4.00
400 402 2.281761 AGCAGGAAACGCCACAGG 60.282 61.111 0.00 0.00 40.02 4.00
440 442 2.537203 TTGCTGATCTGGCCCACCA 61.537 57.895 0.00 0.00 46.51 4.17
441 443 2.048603 GTTGCTGATCTGGCCCACC 61.049 63.158 0.00 0.00 0.00 4.61
442 444 2.401766 CGTTGCTGATCTGGCCCAC 61.402 63.158 0.00 2.25 0.00 4.61
443 445 2.046023 CGTTGCTGATCTGGCCCA 60.046 61.111 0.00 0.00 0.00 5.36
444 446 3.512516 GCGTTGCTGATCTGGCCC 61.513 66.667 0.00 0.00 0.00 5.80
445 447 3.869272 CGCGTTGCTGATCTGGCC 61.869 66.667 0.00 0.00 0.00 5.36
446 448 2.806856 CTCGCGTTGCTGATCTGGC 61.807 63.158 5.77 3.25 0.00 4.85
447 449 2.806856 GCTCGCGTTGCTGATCTGG 61.807 63.158 16.74 0.00 0.00 3.86
448 450 0.526310 TAGCTCGCGTTGCTGATCTG 60.526 55.000 28.90 0.00 41.32 2.90
449 451 0.248825 CTAGCTCGCGTTGCTGATCT 60.249 55.000 28.90 12.78 41.32 2.75
450 452 1.816214 GCTAGCTCGCGTTGCTGATC 61.816 60.000 28.90 17.89 41.32 2.92
451 453 1.880340 GCTAGCTCGCGTTGCTGAT 60.880 57.895 28.90 13.35 41.32 2.90
452 454 2.507102 GCTAGCTCGCGTTGCTGA 60.507 61.111 28.90 16.80 41.32 4.26
453 455 2.507992 AGCTAGCTCGCGTTGCTG 60.508 61.111 28.90 21.50 41.32 4.41
454 456 2.202676 GAGCTAGCTCGCGTTGCT 60.203 61.111 28.04 25.91 43.79 3.91
455 457 2.507102 TGAGCTAGCTCGCGTTGC 60.507 61.111 33.55 14.30 45.48 4.17
456 458 3.685592 CTGAGCTAGCTCGCGTTG 58.314 61.111 33.55 19.39 45.48 4.10
465 467 3.257393 ACTCATGAAAACGCTGAGCTAG 58.743 45.455 1.78 0.00 40.01 3.42
466 468 3.319137 ACTCATGAAAACGCTGAGCTA 57.681 42.857 1.78 0.00 40.01 3.32
467 469 2.175878 ACTCATGAAAACGCTGAGCT 57.824 45.000 1.78 0.00 40.01 4.09
468 470 2.578495 CAACTCATGAAAACGCTGAGC 58.422 47.619 0.00 0.00 40.01 4.26
469 471 2.031769 TGCAACTCATGAAAACGCTGAG 60.032 45.455 0.00 0.00 41.69 3.35
470 472 1.946081 TGCAACTCATGAAAACGCTGA 59.054 42.857 0.00 0.00 0.00 4.26
471 473 2.313234 CTGCAACTCATGAAAACGCTG 58.687 47.619 0.00 0.00 0.00 5.18
472 474 1.335324 GCTGCAACTCATGAAAACGCT 60.335 47.619 0.00 0.00 0.00 5.07
473 475 1.055338 GCTGCAACTCATGAAAACGC 58.945 50.000 0.00 0.00 0.00 4.84
474 476 2.404265 TGCTGCAACTCATGAAAACG 57.596 45.000 0.00 0.00 0.00 3.60
475 477 2.468777 CGTTGCTGCAACTCATGAAAAC 59.531 45.455 34.44 12.70 41.62 2.43
476 478 2.730069 CGTTGCTGCAACTCATGAAAA 58.270 42.857 34.44 1.63 41.62 2.29
477 479 1.600164 GCGTTGCTGCAACTCATGAAA 60.600 47.619 34.44 2.38 41.62 2.69
478 480 0.040157 GCGTTGCTGCAACTCATGAA 60.040 50.000 34.44 3.13 41.62 2.57
479 481 1.575922 GCGTTGCTGCAACTCATGA 59.424 52.632 34.44 3.89 41.62 3.07
480 482 1.794785 CGCGTTGCTGCAACTCATG 60.795 57.895 34.44 23.30 41.62 3.07
481 483 1.904852 CTCGCGTTGCTGCAACTCAT 61.905 55.000 34.44 0.00 41.62 2.90
482 484 2.587473 TCGCGTTGCTGCAACTCA 60.587 55.556 34.44 19.79 41.62 3.41
483 485 2.171940 CTCGCGTTGCTGCAACTC 59.828 61.111 34.44 28.48 41.62 3.01
484 486 4.017877 GCTCGCGTTGCTGCAACT 62.018 61.111 34.44 0.00 41.62 3.16
485 487 4.017877 AGCTCGCGTTGCTGCAAC 62.018 61.111 30.35 30.35 39.56 4.17
490 492 2.591715 AAACCAGCTCGCGTTGCT 60.592 55.556 19.83 19.83 42.06 3.91
491 493 2.427410 CAAACCAGCTCGCGTTGC 60.427 61.111 16.39 16.39 0.00 4.17
492 494 2.252260 CCAAACCAGCTCGCGTTG 59.748 61.111 5.77 0.56 0.00 4.10
493 495 3.660111 GCCAAACCAGCTCGCGTT 61.660 61.111 5.77 0.00 0.00 4.84
496 498 2.677573 AAAACGCCAAACCAGCTCGC 62.678 55.000 0.00 0.00 0.00 5.03
497 499 0.660300 GAAAACGCCAAACCAGCTCG 60.660 55.000 0.00 0.00 0.00 5.03
498 500 0.383949 TGAAAACGCCAAACCAGCTC 59.616 50.000 0.00 0.00 0.00 4.09
499 501 1.039856 ATGAAAACGCCAAACCAGCT 58.960 45.000 0.00 0.00 0.00 4.24
500 502 2.715737 TATGAAAACGCCAAACCAGC 57.284 45.000 0.00 0.00 0.00 4.85
501 503 3.192422 TCCATATGAAAACGCCAAACCAG 59.808 43.478 3.65 0.00 0.00 4.00
502 504 3.157881 TCCATATGAAAACGCCAAACCA 58.842 40.909 3.65 0.00 0.00 3.67
503 505 3.442273 TCTCCATATGAAAACGCCAAACC 59.558 43.478 3.65 0.00 0.00 3.27
504 506 4.695217 TCTCCATATGAAAACGCCAAAC 57.305 40.909 3.65 0.00 0.00 2.93
505 507 4.380444 GCTTCTCCATATGAAAACGCCAAA 60.380 41.667 3.65 0.00 0.00 3.28
506 508 3.128589 GCTTCTCCATATGAAAACGCCAA 59.871 43.478 3.65 0.00 0.00 4.52
507 509 2.682856 GCTTCTCCATATGAAAACGCCA 59.317 45.455 3.65 0.00 0.00 5.69
508 510 2.682856 TGCTTCTCCATATGAAAACGCC 59.317 45.455 3.65 0.00 0.00 5.68
509 511 4.355543 TTGCTTCTCCATATGAAAACGC 57.644 40.909 3.65 2.05 0.00 4.84
510 512 5.883661 ACATTGCTTCTCCATATGAAAACG 58.116 37.500 3.65 0.00 0.00 3.60
511 513 6.749118 GTGACATTGCTTCTCCATATGAAAAC 59.251 38.462 3.65 0.00 0.00 2.43
512 514 6.403527 CGTGACATTGCTTCTCCATATGAAAA 60.404 38.462 3.65 0.00 0.00 2.29
513 515 5.065090 CGTGACATTGCTTCTCCATATGAAA 59.935 40.000 3.65 0.00 0.00 2.69
514 516 4.571984 CGTGACATTGCTTCTCCATATGAA 59.428 41.667 3.65 0.00 0.00 2.57
515 517 4.122046 CGTGACATTGCTTCTCCATATGA 58.878 43.478 3.65 0.00 0.00 2.15
516 518 3.249320 CCGTGACATTGCTTCTCCATATG 59.751 47.826 0.00 0.00 0.00 1.78
517 519 3.470709 CCGTGACATTGCTTCTCCATAT 58.529 45.455 0.00 0.00 0.00 1.78
518 520 2.419990 CCCGTGACATTGCTTCTCCATA 60.420 50.000 0.00 0.00 0.00 2.74
519 521 1.679944 CCCGTGACATTGCTTCTCCAT 60.680 52.381 0.00 0.00 0.00 3.41
520 522 0.321564 CCCGTGACATTGCTTCTCCA 60.322 55.000 0.00 0.00 0.00 3.86
521 523 1.648467 GCCCGTGACATTGCTTCTCC 61.648 60.000 0.00 0.00 0.00 3.71
522 524 0.674895 AGCCCGTGACATTGCTTCTC 60.675 55.000 0.00 0.00 0.00 2.87
523 525 0.957395 CAGCCCGTGACATTGCTTCT 60.957 55.000 0.00 0.00 30.08 2.85
524 526 1.237285 ACAGCCCGTGACATTGCTTC 61.237 55.000 0.00 0.00 30.08 3.86
525 527 1.228245 ACAGCCCGTGACATTGCTT 60.228 52.632 0.00 0.00 30.08 3.91
526 528 2.431683 ACAGCCCGTGACATTGCT 59.568 55.556 0.00 0.00 33.52 3.91
534 536 4.025401 GAAACGCCACAGCCCGTG 62.025 66.667 0.00 0.00 45.92 4.94
535 537 2.386064 TTAGAAACGCCACAGCCCGT 62.386 55.000 0.00 0.00 39.70 5.28
536 538 1.231958 TTTAGAAACGCCACAGCCCG 61.232 55.000 0.00 0.00 34.57 6.13
537 539 0.955905 TTTTAGAAACGCCACAGCCC 59.044 50.000 0.00 0.00 34.57 5.19
538 540 2.785713 TTTTTAGAAACGCCACAGCC 57.214 45.000 0.00 0.00 34.57 4.85
573 575 9.176181 GCACAAAATGAACTCGAAATAAAACTA 57.824 29.630 0.00 0.00 0.00 2.24
574 576 7.096640 CGCACAAAATGAACTCGAAATAAAACT 60.097 33.333 0.00 0.00 0.00 2.66
575 577 6.995633 CGCACAAAATGAACTCGAAATAAAAC 59.004 34.615 0.00 0.00 0.00 2.43
576 578 6.913132 TCGCACAAAATGAACTCGAAATAAAA 59.087 30.769 0.00 0.00 0.00 1.52
577 579 6.431278 TCGCACAAAATGAACTCGAAATAAA 58.569 32.000 0.00 0.00 0.00 1.40
578 580 5.991568 TCGCACAAAATGAACTCGAAATAA 58.008 33.333 0.00 0.00 0.00 1.40
579 581 5.599359 TCGCACAAAATGAACTCGAAATA 57.401 34.783 0.00 0.00 0.00 1.40
580 582 4.481930 TCGCACAAAATGAACTCGAAAT 57.518 36.364 0.00 0.00 0.00 2.17
581 583 3.953874 TCGCACAAAATGAACTCGAAA 57.046 38.095 0.00 0.00 0.00 3.46
582 584 3.558006 TCTTCGCACAAAATGAACTCGAA 59.442 39.130 0.00 0.00 34.10 3.71
583 585 3.127589 TCTTCGCACAAAATGAACTCGA 58.872 40.909 0.00 0.00 0.00 4.04
584 586 3.519908 TCTTCGCACAAAATGAACTCG 57.480 42.857 0.00 0.00 0.00 4.18
585 587 6.638468 AGAAAATCTTCGCACAAAATGAACTC 59.362 34.615 0.00 0.00 36.61 3.01
586 588 6.418819 CAGAAAATCTTCGCACAAAATGAACT 59.581 34.615 0.00 0.00 36.61 3.01
587 589 6.417635 TCAGAAAATCTTCGCACAAAATGAAC 59.582 34.615 0.00 0.00 36.61 3.18
588 590 6.417635 GTCAGAAAATCTTCGCACAAAATGAA 59.582 34.615 0.00 0.00 36.61 2.57
589 591 5.914635 GTCAGAAAATCTTCGCACAAAATGA 59.085 36.000 0.00 0.00 36.61 2.57
590 592 5.686841 TGTCAGAAAATCTTCGCACAAAATG 59.313 36.000 0.00 0.00 36.61 2.32
591 593 5.830912 TGTCAGAAAATCTTCGCACAAAAT 58.169 33.333 0.00 0.00 36.61 1.82
592 594 5.242069 TGTCAGAAAATCTTCGCACAAAA 57.758 34.783 0.00 0.00 36.61 2.44
593 595 4.891627 TGTCAGAAAATCTTCGCACAAA 57.108 36.364 0.00 0.00 36.61 2.83
594 596 4.261155 CCTTGTCAGAAAATCTTCGCACAA 60.261 41.667 0.46 0.46 36.45 3.33
595 597 3.250762 CCTTGTCAGAAAATCTTCGCACA 59.749 43.478 0.00 0.00 36.61 4.57
596 598 3.251004 ACCTTGTCAGAAAATCTTCGCAC 59.749 43.478 0.00 0.00 36.61 5.34
597 599 3.476552 ACCTTGTCAGAAAATCTTCGCA 58.523 40.909 0.00 0.00 36.61 5.10
598 600 3.498397 TGACCTTGTCAGAAAATCTTCGC 59.502 43.478 0.00 0.00 37.67 4.70
610 612 5.869344 CGAAATCACTATTCTGACCTTGTCA 59.131 40.000 0.00 0.00 40.50 3.58
611 613 5.292101 CCGAAATCACTATTCTGACCTTGTC 59.708 44.000 0.00 0.00 0.00 3.18
612 614 5.178797 CCGAAATCACTATTCTGACCTTGT 58.821 41.667 0.00 0.00 0.00 3.16
613 615 5.178797 ACCGAAATCACTATTCTGACCTTG 58.821 41.667 0.00 0.00 0.00 3.61
614 616 5.046591 TGACCGAAATCACTATTCTGACCTT 60.047 40.000 0.00 0.00 0.00 3.50
615 617 4.466370 TGACCGAAATCACTATTCTGACCT 59.534 41.667 0.00 0.00 0.00 3.85
616 618 4.755411 TGACCGAAATCACTATTCTGACC 58.245 43.478 0.00 0.00 0.00 4.02
617 619 5.651530 TCTGACCGAAATCACTATTCTGAC 58.348 41.667 0.00 0.00 0.00 3.51
618 620 5.652452 TCTCTGACCGAAATCACTATTCTGA 59.348 40.000 0.00 0.00 0.00 3.27
619 621 5.895928 TCTCTGACCGAAATCACTATTCTG 58.104 41.667 0.00 0.00 0.00 3.02
620 622 5.888724 TCTCTCTGACCGAAATCACTATTCT 59.111 40.000 0.00 0.00 0.00 2.40
621 623 6.038825 TCTCTCTCTGACCGAAATCACTATTC 59.961 42.308 0.00 0.00 0.00 1.75
622 624 5.888724 TCTCTCTCTGACCGAAATCACTATT 59.111 40.000 0.00 0.00 0.00 1.73
623 625 5.298276 GTCTCTCTCTGACCGAAATCACTAT 59.702 44.000 0.00 0.00 0.00 2.12
624 626 4.636648 GTCTCTCTCTGACCGAAATCACTA 59.363 45.833 0.00 0.00 0.00 2.74
625 627 3.442273 GTCTCTCTCTGACCGAAATCACT 59.558 47.826 0.00 0.00 0.00 3.41
626 628 3.729462 CGTCTCTCTCTGACCGAAATCAC 60.729 52.174 0.00 0.00 0.00 3.06
627 629 2.420372 CGTCTCTCTCTGACCGAAATCA 59.580 50.000 0.00 0.00 0.00 2.57
628 630 2.223386 CCGTCTCTCTCTGACCGAAATC 60.223 54.545 0.00 0.00 0.00 2.17
629 631 1.746220 CCGTCTCTCTCTGACCGAAAT 59.254 52.381 0.00 0.00 0.00 2.17
630 632 1.166129 CCGTCTCTCTCTGACCGAAA 58.834 55.000 0.00 0.00 0.00 3.46
631 633 0.323957 TCCGTCTCTCTCTGACCGAA 59.676 55.000 0.00 0.00 0.00 4.30
632 634 0.108089 CTCCGTCTCTCTCTGACCGA 60.108 60.000 0.00 0.00 0.00 4.69
633 635 0.108089 TCTCCGTCTCTCTCTGACCG 60.108 60.000 0.00 0.00 0.00 4.79
634 636 1.208535 TCTCTCCGTCTCTCTCTGACC 59.791 57.143 0.00 0.00 0.00 4.02
635 637 2.167693 TCTCTCTCCGTCTCTCTCTGAC 59.832 54.545 0.00 0.00 0.00 3.51
636 638 2.430694 CTCTCTCTCCGTCTCTCTCTGA 59.569 54.545 0.00 0.00 0.00 3.27
637 639 2.430694 TCTCTCTCTCCGTCTCTCTCTG 59.569 54.545 0.00 0.00 0.00 3.35
647 649 5.853936 TCTCTCTAAATCTCTCTCTCTCCG 58.146 45.833 0.00 0.00 0.00 4.63
698 708 0.892063 AGCGACCTCTCTGTTTCTCC 59.108 55.000 0.00 0.00 0.00 3.71
882 968 1.520787 CGTTGGGGTGGATACGAGC 60.521 63.158 0.00 0.00 42.51 5.03
886 972 1.003928 AGGTTTCGTTGGGGTGGATAC 59.996 52.381 0.00 0.00 0.00 2.24
973 1096 5.188434 TCCACTAAACGACTAGCTAAGCTA 58.812 41.667 0.00 0.00 40.44 3.32
974 1097 4.015084 TCCACTAAACGACTAGCTAAGCT 58.985 43.478 0.00 0.00 43.41 3.74
975 1098 4.352887 CTCCACTAAACGACTAGCTAAGC 58.647 47.826 0.00 0.00 0.00 3.09
1082 1205 0.107643 GCCCTTCTCCTGGATGTAGC 59.892 60.000 0.00 0.00 0.00 3.58
1167 1290 1.448013 GAGGTAGTTGGTCCAGCGC 60.448 63.158 0.00 0.00 0.00 5.92
1208 1331 1.296755 CTCCTCGTCGTCGGTGAAGA 61.297 60.000 1.55 0.00 37.69 2.87
1237 1360 1.990614 GGAGGGAGTGGAGGTGGAC 60.991 68.421 0.00 0.00 0.00 4.02
1276 1399 8.467402 AAGAAGACACAAACAATAGATACGAG 57.533 34.615 0.00 0.00 0.00 4.18
1279 1402 8.874816 GGAGAAGAAGACACAAACAATAGATAC 58.125 37.037 0.00 0.00 0.00 2.24
1338 1470 1.216678 ACCACCTGAACCAACCAATCA 59.783 47.619 0.00 0.00 0.00 2.57
1516 1922 3.733344 GAAGATACCGGCTGCCGCA 62.733 63.158 34.33 23.85 46.86 5.69
1667 2073 4.166011 GTTGTCCATGCCGAGCGC 62.166 66.667 0.00 0.00 38.31 5.92
1668 2074 3.499737 GGTTGTCCATGCCGAGCG 61.500 66.667 0.00 0.00 0.00 5.03
1669 2075 2.045926 AGGTTGTCCATGCCGAGC 60.046 61.111 0.00 0.00 35.89 5.03
1670 2076 0.107508 ATGAGGTTGTCCATGCCGAG 60.108 55.000 0.00 0.00 35.89 4.63
1671 2077 0.392863 CATGAGGTTGTCCATGCCGA 60.393 55.000 0.00 0.00 34.52 5.54
1926 2374 3.134127 GGTCGCTGGCCACCATTC 61.134 66.667 0.00 0.00 30.82 2.67
1938 2386 1.891919 TTGTTGCACTCCTGGTCGC 60.892 57.895 0.00 0.00 0.00 5.19
2041 2489 3.041940 CCACCGTCCGTGTTGAGC 61.042 66.667 0.00 0.00 41.26 4.26
2141 2606 1.138069 TGTGGAAAAGAGACGTGCAGA 59.862 47.619 0.00 0.00 0.00 4.26
2147 2612 2.076863 GGTGGATGTGGAAAAGAGACG 58.923 52.381 0.00 0.00 0.00 4.18
2248 2731 8.070034 TCATGACATTTGCCTGATAAAAAGAT 57.930 30.769 0.00 0.00 0.00 2.40
2308 2803 2.545113 GCCATGACATTTGCCTGCATAG 60.545 50.000 0.00 0.00 0.00 2.23
2406 2901 8.478877 CCAATCCAACAATTAGTAGTCTAGTCT 58.521 37.037 0.00 0.00 0.00 3.24
2407 2902 8.475639 TCCAATCCAACAATTAGTAGTCTAGTC 58.524 37.037 0.00 0.00 0.00 2.59
2408 2903 8.375493 TCCAATCCAACAATTAGTAGTCTAGT 57.625 34.615 0.00 0.00 0.00 2.57
2409 2904 9.265901 CATCCAATCCAACAATTAGTAGTCTAG 57.734 37.037 0.00 0.00 0.00 2.43
2410 2905 7.715249 GCATCCAATCCAACAATTAGTAGTCTA 59.285 37.037 0.00 0.00 0.00 2.59
2635 3151 6.486657 AGAAGTGCTTTTATGTCACAAGCTAA 59.513 34.615 12.27 0.00 42.91 3.09
2653 3169 2.612212 TGTTGTCCGAAAAGAGAAGTGC 59.388 45.455 0.00 0.00 0.00 4.40
2660 3176 4.033129 CACGTACTTTGTTGTCCGAAAAGA 59.967 41.667 0.00 0.00 35.39 2.52
2672 3195 2.209872 CGTCACGCACGTACTTTGT 58.790 52.632 0.00 0.00 44.07 2.83
2684 3207 1.949133 CCACACTCACACCGTCACG 60.949 63.158 0.00 0.00 0.00 4.35
2685 3208 2.244651 GCCACACTCACACCGTCAC 61.245 63.158 0.00 0.00 0.00 3.67
2686 3209 1.110518 TAGCCACACTCACACCGTCA 61.111 55.000 0.00 0.00 0.00 4.35
2687 3210 0.246635 ATAGCCACACTCACACCGTC 59.753 55.000 0.00 0.00 0.00 4.79
2688 3211 1.552578 TATAGCCACACTCACACCGT 58.447 50.000 0.00 0.00 0.00 4.83
2689 3212 2.890808 ATATAGCCACACTCACACCG 57.109 50.000 0.00 0.00 0.00 4.94
2690 3213 4.341235 TGAGTATATAGCCACACTCACACC 59.659 45.833 0.54 0.00 41.76 4.16
2716 3245 9.616634 CATAATGCAAGCGTCAAGAAATAATAT 57.383 29.630 0.00 0.00 0.00 1.28
2731 3261 2.875087 TCATGTGCCATAATGCAAGC 57.125 45.000 0.00 0.00 44.11 4.01
2798 3328 5.163632 TGACAATCCAATCAAATGATGACCG 60.164 40.000 0.00 0.00 41.93 4.79
2843 3379 3.340814 AGACTAATGCTGGACACAAGG 57.659 47.619 0.00 0.00 0.00 3.61
2869 3407 7.148086 GCAAAGTACATGTGGGAGATTGATTAA 60.148 37.037 9.11 0.00 0.00 1.40
2884 3423 5.879237 ACCATTATTGTCGCAAAGTACATG 58.121 37.500 0.00 0.00 0.00 3.21
2980 3541 9.651913 GTGAAATGGAAAACCAACATTGTATAT 57.348 29.630 0.00 0.00 35.22 0.86
2982 3543 7.504403 TGTGAAATGGAAAACCAACATTGTAT 58.496 30.769 0.00 0.00 35.22 2.29
2987 3548 7.160726 CCTAATGTGAAATGGAAAACCAACAT 58.839 34.615 0.00 0.00 0.00 2.71
2991 3552 5.011533 CACCCTAATGTGAAATGGAAAACCA 59.988 40.000 0.00 0.00 38.55 3.67
3096 3658 9.406828 GACGAAAGAAACCTAATTTGCTTTATT 57.593 29.630 0.00 0.00 32.50 1.40
3097 3659 8.793592 AGACGAAAGAAACCTAATTTGCTTTAT 58.206 29.630 0.00 0.00 32.50 1.40
3098 3660 8.073768 CAGACGAAAGAAACCTAATTTGCTTTA 58.926 33.333 0.00 0.00 32.50 1.85
3099 3661 6.918022 CAGACGAAAGAAACCTAATTTGCTTT 59.082 34.615 0.00 0.00 33.79 3.51
3100 3662 6.039382 ACAGACGAAAGAAACCTAATTTGCTT 59.961 34.615 0.00 0.00 0.00 3.91
3101 3663 5.531287 ACAGACGAAAGAAACCTAATTTGCT 59.469 36.000 0.00 0.00 0.00 3.91
3102 3664 5.758924 ACAGACGAAAGAAACCTAATTTGC 58.241 37.500 0.00 0.00 0.00 3.68
3103 3665 6.954944 TGACAGACGAAAGAAACCTAATTTG 58.045 36.000 0.00 0.00 0.00 2.32
3104 3666 7.308589 CCATGACAGACGAAAGAAACCTAATTT 60.309 37.037 0.00 0.00 0.00 1.82
3105 3667 6.149474 CCATGACAGACGAAAGAAACCTAATT 59.851 38.462 0.00 0.00 0.00 1.40
3106 3668 5.643777 CCATGACAGACGAAAGAAACCTAAT 59.356 40.000 0.00 0.00 0.00 1.73
3107 3669 4.994852 CCATGACAGACGAAAGAAACCTAA 59.005 41.667 0.00 0.00 0.00 2.69
3108 3670 4.566004 CCATGACAGACGAAAGAAACCTA 58.434 43.478 0.00 0.00 0.00 3.08
3109 3671 3.403038 CCATGACAGACGAAAGAAACCT 58.597 45.455 0.00 0.00 0.00 3.50
3110 3672 2.095718 GCCATGACAGACGAAAGAAACC 60.096 50.000 0.00 0.00 0.00 3.27
3111 3673 2.548057 TGCCATGACAGACGAAAGAAAC 59.452 45.455 0.00 0.00 0.00 2.78
3112 3674 2.844946 TGCCATGACAGACGAAAGAAA 58.155 42.857 0.00 0.00 0.00 2.52
3113 3675 2.542020 TGCCATGACAGACGAAAGAA 57.458 45.000 0.00 0.00 0.00 2.52
3114 3676 2.768253 ATGCCATGACAGACGAAAGA 57.232 45.000 0.00 0.00 0.00 2.52
3115 3677 3.837213 AAATGCCATGACAGACGAAAG 57.163 42.857 0.00 0.00 0.00 2.62
3116 3678 4.037327 TGAAAAATGCCATGACAGACGAAA 59.963 37.500 0.00 0.00 0.00 3.46
3117 3679 3.567585 TGAAAAATGCCATGACAGACGAA 59.432 39.130 0.00 0.00 0.00 3.85
3118 3680 3.145286 TGAAAAATGCCATGACAGACGA 58.855 40.909 0.00 0.00 0.00 4.20
3119 3681 3.557577 TGAAAAATGCCATGACAGACG 57.442 42.857 0.00 0.00 0.00 4.18
3120 3682 6.601741 TTTTTGAAAAATGCCATGACAGAC 57.398 33.333 0.00 0.00 0.00 3.51
3150 3712 6.778821 TGTGGGTTGAATTCTCTGAAATAGA 58.221 36.000 7.05 0.00 0.00 1.98
3151 3713 6.656693 ACTGTGGGTTGAATTCTCTGAAATAG 59.343 38.462 7.05 0.00 0.00 1.73
3152 3714 6.542821 ACTGTGGGTTGAATTCTCTGAAATA 58.457 36.000 7.05 0.00 0.00 1.40
3153 3715 5.388654 ACTGTGGGTTGAATTCTCTGAAAT 58.611 37.500 7.05 0.00 0.00 2.17
3154 3716 4.792068 ACTGTGGGTTGAATTCTCTGAAA 58.208 39.130 7.05 0.00 0.00 2.69
3155 3717 4.437682 ACTGTGGGTTGAATTCTCTGAA 57.562 40.909 7.05 0.00 0.00 3.02
3156 3718 4.437682 AACTGTGGGTTGAATTCTCTGA 57.562 40.909 7.05 0.00 36.70 3.27
3157 3719 5.707298 ACATAACTGTGGGTTGAATTCTCTG 59.293 40.000 7.05 0.00 38.75 3.35
3158 3720 5.880901 ACATAACTGTGGGTTGAATTCTCT 58.119 37.500 7.05 0.00 38.75 3.10
3159 3721 6.575162 AACATAACTGTGGGTTGAATTCTC 57.425 37.500 7.05 0.06 38.75 2.87
3160 3722 6.976934 AAACATAACTGTGGGTTGAATTCT 57.023 33.333 7.05 0.00 38.75 2.40
3161 3723 9.191995 CTTAAAACATAACTGTGGGTTGAATTC 57.808 33.333 0.00 0.00 38.75 2.17
3162 3724 8.700973 ACTTAAAACATAACTGTGGGTTGAATT 58.299 29.630 0.00 0.00 38.75 2.17
3163 3725 8.245195 ACTTAAAACATAACTGTGGGTTGAAT 57.755 30.769 0.00 0.00 38.75 2.57
3164 3726 7.648039 ACTTAAAACATAACTGTGGGTTGAA 57.352 32.000 0.00 0.00 38.75 2.69
3165 3727 7.648039 AACTTAAAACATAACTGTGGGTTGA 57.352 32.000 0.00 0.00 38.75 3.18
3166 3728 9.804758 TTTAACTTAAAACATAACTGTGGGTTG 57.195 29.630 0.00 0.00 38.75 3.77
3205 3767 9.287373 ACAGGGACTTTTGTATAAAATACGAAA 57.713 29.630 10.55 10.55 34.60 3.46
3206 3768 8.851541 ACAGGGACTTTTGTATAAAATACGAA 57.148 30.769 0.00 0.00 34.60 3.85
3207 3769 8.316214 AGACAGGGACTTTTGTATAAAATACGA 58.684 33.333 0.00 0.00 34.60 3.43
3208 3770 8.488651 AGACAGGGACTTTTGTATAAAATACG 57.511 34.615 0.00 0.00 34.60 3.06
3212 3774 9.416284 AGAAAAGACAGGGACTTTTGTATAAAA 57.584 29.630 10.26 0.00 44.20 1.52
3213 3775 8.990163 AGAAAAGACAGGGACTTTTGTATAAA 57.010 30.769 10.26 0.00 44.20 1.40
3214 3776 8.846211 CAAGAAAAGACAGGGACTTTTGTATAA 58.154 33.333 10.26 0.00 44.20 0.98
3215 3777 8.215050 TCAAGAAAAGACAGGGACTTTTGTATA 58.785 33.333 10.26 0.00 44.20 1.47
3216 3778 7.060421 TCAAGAAAAGACAGGGACTTTTGTAT 58.940 34.615 10.26 0.00 44.20 2.29
3217 3779 6.419791 TCAAGAAAAGACAGGGACTTTTGTA 58.580 36.000 10.26 0.00 44.20 2.41
3218 3780 5.261216 TCAAGAAAAGACAGGGACTTTTGT 58.739 37.500 10.26 4.88 44.20 2.83
3219 3781 5.835113 TCAAGAAAAGACAGGGACTTTTG 57.165 39.130 10.26 0.00 44.20 2.44
3220 3782 6.850752 TTTCAAGAAAAGACAGGGACTTTT 57.149 33.333 0.00 0.00 45.95 2.27
3221 3783 6.607198 TGATTTCAAGAAAAGACAGGGACTTT 59.393 34.615 0.00 0.00 38.91 2.66
3222 3784 6.129179 TGATTTCAAGAAAAGACAGGGACTT 58.871 36.000 0.00 0.00 31.71 3.01
3223 3785 5.694995 TGATTTCAAGAAAAGACAGGGACT 58.305 37.500 0.00 0.00 33.80 3.85
3224 3786 6.209361 GTTGATTTCAAGAAAAGACAGGGAC 58.791 40.000 0.00 0.00 36.39 4.46
3225 3787 5.301805 GGTTGATTTCAAGAAAAGACAGGGA 59.698 40.000 0.00 0.00 36.39 4.20
3226 3788 5.509670 GGGTTGATTTCAAGAAAAGACAGGG 60.510 44.000 0.00 0.00 36.39 4.45
3227 3789 5.532557 GGGTTGATTTCAAGAAAAGACAGG 58.467 41.667 0.00 0.00 36.39 4.00
3228 3790 5.215160 CGGGTTGATTTCAAGAAAAGACAG 58.785 41.667 0.00 0.00 36.39 3.51
3229 3791 4.499019 GCGGGTTGATTTCAAGAAAAGACA 60.499 41.667 0.00 0.00 36.39 3.41
3230 3792 3.981416 GCGGGTTGATTTCAAGAAAAGAC 59.019 43.478 0.00 0.00 36.39 3.01
3231 3793 3.005367 GGCGGGTTGATTTCAAGAAAAGA 59.995 43.478 0.00 0.00 36.39 2.52
3232 3794 3.317150 GGCGGGTTGATTTCAAGAAAAG 58.683 45.455 0.00 0.00 36.39 2.27
3233 3795 2.287909 CGGCGGGTTGATTTCAAGAAAA 60.288 45.455 0.00 0.00 36.39 2.29
3234 3796 1.268352 CGGCGGGTTGATTTCAAGAAA 59.732 47.619 0.00 0.00 36.39 2.52
3235 3797 0.878416 CGGCGGGTTGATTTCAAGAA 59.122 50.000 0.00 0.00 36.39 2.52
3236 3798 0.250553 ACGGCGGGTTGATTTCAAGA 60.251 50.000 13.24 0.00 36.39 3.02
3237 3799 0.168128 GACGGCGGGTTGATTTCAAG 59.832 55.000 13.24 0.00 36.39 3.02
3238 3800 1.238625 GGACGGCGGGTTGATTTCAA 61.239 55.000 13.24 0.00 0.00 2.69
3239 3801 1.673009 GGACGGCGGGTTGATTTCA 60.673 57.895 13.24 0.00 0.00 2.69
3240 3802 2.746803 CGGACGGCGGGTTGATTTC 61.747 63.158 13.24 0.00 0.00 2.17
3241 3803 2.744709 CGGACGGCGGGTTGATTT 60.745 61.111 13.24 0.00 0.00 2.17
3242 3804 4.770874 CCGGACGGCGGGTTGATT 62.771 66.667 13.24 0.00 0.00 2.57
3245 3807 2.855880 TAAATCCGGACGGCGGGTTG 62.856 60.000 15.41 0.00 36.04 3.77
3246 3808 2.182732 TTAAATCCGGACGGCGGGTT 62.183 55.000 15.41 3.28 36.04 4.11
3247 3809 2.582734 CTTAAATCCGGACGGCGGGT 62.583 60.000 15.41 0.00 36.04 5.28
3248 3810 1.885850 CTTAAATCCGGACGGCGGG 60.886 63.158 6.12 8.96 35.92 6.13
3249 3811 1.149964 GACTTAAATCCGGACGGCGG 61.150 60.000 6.12 0.00 34.68 6.13
3250 3812 0.458889 TGACTTAAATCCGGACGGCG 60.459 55.000 6.12 4.80 34.68 6.46
3251 3813 1.004595 GTGACTTAAATCCGGACGGC 58.995 55.000 6.12 0.00 34.68 5.68
3252 3814 1.997606 GTGTGACTTAAATCCGGACGG 59.002 52.381 6.12 3.96 0.00 4.79
3253 3815 2.921754 GAGTGTGACTTAAATCCGGACG 59.078 50.000 6.12 0.00 0.00 4.79
3254 3816 3.921677 TGAGTGTGACTTAAATCCGGAC 58.078 45.455 6.12 0.00 0.00 4.79
3255 3817 4.610605 TTGAGTGTGACTTAAATCCGGA 57.389 40.909 6.61 6.61 0.00 5.14
3256 3818 4.083484 GGTTTGAGTGTGACTTAAATCCGG 60.083 45.833 0.00 0.00 36.35 5.14
3257 3819 4.377022 CGGTTTGAGTGTGACTTAAATCCG 60.377 45.833 14.34 14.34 39.37 4.18
3258 3820 4.514066 ACGGTTTGAGTGTGACTTAAATCC 59.486 41.667 0.00 0.00 36.35 3.01
3259 3821 5.668558 ACGGTTTGAGTGTGACTTAAATC 57.331 39.130 0.00 0.00 36.35 2.17
3260 3822 7.739498 ATAACGGTTTGAGTGTGACTTAAAT 57.261 32.000 0.00 0.00 36.35 1.40
3261 3823 7.556733 AATAACGGTTTGAGTGTGACTTAAA 57.443 32.000 0.00 0.00 32.30 1.52
3262 3824 7.556733 AAATAACGGTTTGAGTGTGACTTAA 57.443 32.000 0.00 0.00 0.00 1.85
3263 3825 7.556733 AAAATAACGGTTTGAGTGTGACTTA 57.443 32.000 0.00 0.00 0.00 2.24
3264 3826 6.445357 AAAATAACGGTTTGAGTGTGACTT 57.555 33.333 0.00 0.00 0.00 3.01
3265 3827 6.539464 TGTAAAATAACGGTTTGAGTGTGACT 59.461 34.615 0.00 0.00 0.00 3.41
3266 3828 6.717413 TGTAAAATAACGGTTTGAGTGTGAC 58.283 36.000 0.00 0.00 0.00 3.67
3267 3829 6.922247 TGTAAAATAACGGTTTGAGTGTGA 57.078 33.333 0.00 0.00 0.00 3.58
3268 3830 8.568732 AAATGTAAAATAACGGTTTGAGTGTG 57.431 30.769 0.00 0.00 0.00 3.82
3269 3831 9.589111 AAAAATGTAAAATAACGGTTTGAGTGT 57.411 25.926 0.00 0.00 0.00 3.55
3271 3833 9.804758 TGAAAAATGTAAAATAACGGTTTGAGT 57.195 25.926 0.00 0.00 0.00 3.41
3304 3866 7.415206 GCGGATGAATTACCTAAAACATCAGTT 60.415 37.037 0.00 0.00 40.40 3.16
3305 3867 6.038271 GCGGATGAATTACCTAAAACATCAGT 59.962 38.462 0.00 0.00 35.54 3.41
3306 3868 6.038161 TGCGGATGAATTACCTAAAACATCAG 59.962 38.462 0.00 0.00 35.54 2.90
3307 3869 5.883115 TGCGGATGAATTACCTAAAACATCA 59.117 36.000 0.00 0.00 35.54 3.07
3308 3870 6.260050 TCTGCGGATGAATTACCTAAAACATC 59.740 38.462 0.00 0.00 34.37 3.06
3309 3871 6.119536 TCTGCGGATGAATTACCTAAAACAT 58.880 36.000 0.00 0.00 0.00 2.71
3310 3872 5.492895 TCTGCGGATGAATTACCTAAAACA 58.507 37.500 0.00 0.00 0.00 2.83
3311 3873 6.260050 TGATCTGCGGATGAATTACCTAAAAC 59.740 38.462 14.17 0.00 31.46 2.43
3312 3874 6.353323 TGATCTGCGGATGAATTACCTAAAA 58.647 36.000 14.17 0.00 31.46 1.52
3313 3875 5.924356 TGATCTGCGGATGAATTACCTAAA 58.076 37.500 14.17 0.00 31.46 1.85
3314 3876 5.545063 TGATCTGCGGATGAATTACCTAA 57.455 39.130 14.17 0.00 31.46 2.69
3315 3877 5.745312 ATGATCTGCGGATGAATTACCTA 57.255 39.130 14.17 0.00 31.46 3.08
3316 3878 4.630644 ATGATCTGCGGATGAATTACCT 57.369 40.909 14.17 0.00 31.46 3.08
3317 3879 6.992063 AATATGATCTGCGGATGAATTACC 57.008 37.500 14.17 0.00 31.46 2.85
3318 3880 9.979270 CTTAAATATGATCTGCGGATGAATTAC 57.021 33.333 14.17 0.00 31.46 1.89
3319 3881 9.725019 ACTTAAATATGATCTGCGGATGAATTA 57.275 29.630 14.17 3.69 31.46 1.40
3320 3882 8.627208 ACTTAAATATGATCTGCGGATGAATT 57.373 30.769 14.17 6.75 31.46 2.17
3321 3883 7.879677 TGACTTAAATATGATCTGCGGATGAAT 59.120 33.333 14.17 9.02 31.46 2.57
3322 3884 7.216494 TGACTTAAATATGATCTGCGGATGAA 58.784 34.615 14.17 0.85 31.46 2.57
3323 3885 6.758254 TGACTTAAATATGATCTGCGGATGA 58.242 36.000 14.17 4.53 31.46 2.92
3324 3886 7.425577 TTGACTTAAATATGATCTGCGGATG 57.574 36.000 14.17 0.00 31.46 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.