Multiple sequence alignment - TraesCS7A01G030200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G030200 chr7A 100.000 2603 0 0 1 2603 12215754 12218356 0.000000e+00 4807.0
1 TraesCS7A01G030200 chr7A 89.706 68 7 0 268 335 721781172 721781239 1.280000e-13 87.9
2 TraesCS7A01G030200 chr7A 94.737 38 2 0 345 382 375878896 375878933 2.800000e-05 60.2
3 TraesCS7A01G030200 chr7A 89.362 47 4 1 343 389 733521583 733521628 1.010000e-04 58.4
4 TraesCS7A01G030200 chr3B 97.751 2223 35 9 392 2603 201489460 201487242 0.000000e+00 3814.0
5 TraesCS7A01G030200 chr3B 97.019 2214 47 11 405 2603 201486173 201483964 0.000000e+00 3705.0
6 TraesCS7A01G030200 chr3B 85.526 76 10 1 268 342 217984917 217984992 7.720000e-11 78.7
7 TraesCS7A01G030200 chr3B 85.526 76 10 1 268 342 219483623 219483698 7.720000e-11 78.7
8 TraesCS7A01G030200 chr3A 97.742 2214 43 7 392 2603 524024917 524022709 0.000000e+00 3805.0
9 TraesCS7A01G030200 chr5D 97.166 2223 41 11 392 2603 503327236 503325025 0.000000e+00 3736.0
10 TraesCS7A01G030200 chr5D 97.026 2219 47 10 392 2600 6239557 6241766 0.000000e+00 3714.0
11 TraesCS7A01G030200 chr7B 96.990 2226 48 11 392 2603 662741285 662743505 0.000000e+00 3722.0
12 TraesCS7A01G030200 chr1D 96.896 2223 47 11 392 2603 254473143 254470932 0.000000e+00 3703.0
13 TraesCS7A01G030200 chr1D 94.995 2218 95 11 392 2603 244764835 244762628 0.000000e+00 3467.0
14 TraesCS7A01G030200 chr1D 94.685 2220 95 16 392 2603 244197633 244195429 0.000000e+00 3424.0
15 TraesCS7A01G030200 chr4A 85.938 384 32 9 6 388 725512551 725512189 8.730000e-105 390.0
16 TraesCS7A01G030200 chr4A 87.081 209 21 4 184 387 725557630 725557423 5.600000e-57 231.0
17 TraesCS7A01G030200 chr4A 92.188 128 10 0 1 128 725558568 725558441 5.720000e-42 182.0
18 TraesCS7A01G030200 chr4A 94.737 38 2 0 345 382 656782895 656782858 2.800000e-05 60.2
19 TraesCS7A01G030200 chr4A 97.222 36 0 1 157 192 725558431 725558397 2.800000e-05 60.2
20 TraesCS7A01G030200 chr2B 87.013 77 9 1 267 342 139230059 139229983 4.620000e-13 86.1
21 TraesCS7A01G030200 chr2B 84.884 86 10 2 260 342 215837671 215837756 1.660000e-12 84.2
22 TraesCS7A01G030200 chr5A 85.135 74 10 1 269 341 7432589 7432516 9.990000e-10 75.0
23 TraesCS7A01G030200 chr1B 82.927 82 12 2 264 344 587663956 587664036 3.590000e-09 73.1
24 TraesCS7A01G030200 chrUn 94.737 38 2 0 345 382 275536521 275536558 2.800000e-05 60.2
25 TraesCS7A01G030200 chrUn 94.737 38 2 0 345 382 398232914 398232877 2.800000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G030200 chr7A 12215754 12218356 2602 False 4807.0 4807 100.000 1 2603 1 chr7A.!!$F1 2602
1 TraesCS7A01G030200 chr3B 201483964 201489460 5496 True 3759.5 3814 97.385 392 2603 2 chr3B.!!$R1 2211
2 TraesCS7A01G030200 chr3A 524022709 524024917 2208 True 3805.0 3805 97.742 392 2603 1 chr3A.!!$R1 2211
3 TraesCS7A01G030200 chr5D 503325025 503327236 2211 True 3736.0 3736 97.166 392 2603 1 chr5D.!!$R1 2211
4 TraesCS7A01G030200 chr5D 6239557 6241766 2209 False 3714.0 3714 97.026 392 2600 1 chr5D.!!$F1 2208
5 TraesCS7A01G030200 chr7B 662741285 662743505 2220 False 3722.0 3722 96.990 392 2603 1 chr7B.!!$F1 2211
6 TraesCS7A01G030200 chr1D 254470932 254473143 2211 True 3703.0 3703 96.896 392 2603 1 chr1D.!!$R3 2211
7 TraesCS7A01G030200 chr1D 244762628 244764835 2207 True 3467.0 3467 94.995 392 2603 1 chr1D.!!$R2 2211
8 TraesCS7A01G030200 chr1D 244195429 244197633 2204 True 3424.0 3424 94.685 392 2603 1 chr1D.!!$R1 2211

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
139 140 0.033504 GTTTCGTCCTCAGTGCAGGA 59.966 55.0 7.1 7.1 40.56 3.86 F
207 208 0.036388 GGTGCCCAGACGATCAGAAA 60.036 55.0 0.0 0.0 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1483 1495 2.160615 CCAACGTGTCAATCGCCAAATA 59.839 45.455 0.0 0.0 0.0 1.40 R
1915 1929 2.236395 GGTTCGAATCCCTCTCTTTCCA 59.764 50.000 0.0 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.068064 GTGGAAACCATGGCCGGG 61.068 66.667 13.04 11.54 35.28 5.73
18 19 3.585428 TGGAAACCATGGCCGGGT 61.585 61.111 13.04 12.91 41.41 5.28
19 20 3.068064 GGAAACCATGGCCGGGTG 61.068 66.667 18.74 7.59 39.01 4.61
20 21 2.034999 GAAACCATGGCCGGGTGA 59.965 61.111 18.74 0.00 39.01 4.02
21 22 2.035626 AAACCATGGCCGGGTGAG 59.964 61.111 18.74 4.96 39.01 3.51
22 23 4.740822 AACCATGGCCGGGTGAGC 62.741 66.667 18.74 0.00 39.01 4.26
31 32 4.504916 CGGGTGAGCAGCGGAGAG 62.505 72.222 1.59 0.00 0.00 3.20
32 33 3.071206 GGGTGAGCAGCGGAGAGA 61.071 66.667 0.00 0.00 0.00 3.10
33 34 2.650116 GGGTGAGCAGCGGAGAGAA 61.650 63.158 0.00 0.00 0.00 2.87
34 35 1.446966 GGTGAGCAGCGGAGAGAAC 60.447 63.158 0.00 0.00 0.00 3.01
35 36 1.446966 GTGAGCAGCGGAGAGAACC 60.447 63.158 0.00 0.00 0.00 3.62
36 37 1.607756 TGAGCAGCGGAGAGAACCT 60.608 57.895 0.00 0.00 0.00 3.50
37 38 1.140804 GAGCAGCGGAGAGAACCTC 59.859 63.158 0.00 0.00 41.22 3.85
38 39 2.202676 GCAGCGGAGAGAACCTCG 60.203 66.667 0.00 0.00 42.89 4.63
39 40 2.995872 GCAGCGGAGAGAACCTCGT 61.996 63.158 0.00 0.00 42.89 4.18
40 41 1.587054 CAGCGGAGAGAACCTCGTT 59.413 57.895 0.00 0.00 42.89 3.85
41 42 0.734253 CAGCGGAGAGAACCTCGTTG 60.734 60.000 0.00 0.00 42.89 4.10
42 43 0.894184 AGCGGAGAGAACCTCGTTGA 60.894 55.000 0.00 0.00 42.89 3.18
43 44 0.173708 GCGGAGAGAACCTCGTTGAT 59.826 55.000 0.00 0.00 42.89 2.57
44 45 1.914634 CGGAGAGAACCTCGTTGATG 58.085 55.000 0.00 0.00 42.89 3.07
45 46 1.469940 CGGAGAGAACCTCGTTGATGG 60.470 57.143 0.00 0.00 42.89 3.51
46 47 1.825474 GGAGAGAACCTCGTTGATGGA 59.175 52.381 0.00 0.00 42.89 3.41
47 48 2.159170 GGAGAGAACCTCGTTGATGGAG 60.159 54.545 0.00 0.00 42.89 3.86
48 49 2.755655 GAGAGAACCTCGTTGATGGAGA 59.244 50.000 0.00 0.00 35.36 3.71
49 50 2.757868 AGAGAACCTCGTTGATGGAGAG 59.242 50.000 0.00 0.00 35.36 3.20
55 56 2.898705 CTCGTTGATGGAGAGGAAAGG 58.101 52.381 0.00 0.00 33.27 3.11
56 57 2.497675 CTCGTTGATGGAGAGGAAAGGA 59.502 50.000 0.00 0.00 33.27 3.36
57 58 2.233922 TCGTTGATGGAGAGGAAAGGAC 59.766 50.000 0.00 0.00 0.00 3.85
58 59 2.028112 CGTTGATGGAGAGGAAAGGACA 60.028 50.000 0.00 0.00 0.00 4.02
59 60 3.557054 CGTTGATGGAGAGGAAAGGACAA 60.557 47.826 0.00 0.00 0.00 3.18
60 61 4.398319 GTTGATGGAGAGGAAAGGACAAA 58.602 43.478 0.00 0.00 0.00 2.83
61 62 4.934797 TGATGGAGAGGAAAGGACAAAT 57.065 40.909 0.00 0.00 0.00 2.32
62 63 4.592942 TGATGGAGAGGAAAGGACAAATG 58.407 43.478 0.00 0.00 0.00 2.32
63 64 4.043310 TGATGGAGAGGAAAGGACAAATGT 59.957 41.667 0.00 0.00 0.00 2.71
64 65 4.453480 TGGAGAGGAAAGGACAAATGTT 57.547 40.909 0.00 0.00 0.00 2.71
65 66 4.144297 TGGAGAGGAAAGGACAAATGTTG 58.856 43.478 0.00 0.00 0.00 3.33
66 67 4.141274 TGGAGAGGAAAGGACAAATGTTGA 60.141 41.667 0.00 0.00 0.00 3.18
67 68 4.457257 GGAGAGGAAAGGACAAATGTTGAG 59.543 45.833 0.00 0.00 0.00 3.02
68 69 5.053978 AGAGGAAAGGACAAATGTTGAGT 57.946 39.130 0.00 0.00 0.00 3.41
69 70 5.449553 AGAGGAAAGGACAAATGTTGAGTT 58.550 37.500 0.00 0.00 0.00 3.01
70 71 5.300286 AGAGGAAAGGACAAATGTTGAGTTG 59.700 40.000 0.00 0.00 33.28 3.16
71 72 4.342092 AGGAAAGGACAAATGTTGAGTTGG 59.658 41.667 0.00 0.00 31.23 3.77
72 73 4.099419 GGAAAGGACAAATGTTGAGTTGGT 59.901 41.667 0.00 0.00 31.23 3.67
73 74 5.395214 GGAAAGGACAAATGTTGAGTTGGTT 60.395 40.000 0.00 0.00 31.23 3.67
74 75 4.918810 AGGACAAATGTTGAGTTGGTTC 57.081 40.909 0.00 0.00 31.23 3.62
75 76 3.636764 AGGACAAATGTTGAGTTGGTTCC 59.363 43.478 0.00 0.00 31.23 3.62
76 77 3.383185 GGACAAATGTTGAGTTGGTTCCA 59.617 43.478 0.00 0.00 31.23 3.53
77 78 4.142049 GGACAAATGTTGAGTTGGTTCCAA 60.142 41.667 0.00 0.00 31.23 3.53
78 79 5.413309 ACAAATGTTGAGTTGGTTCCAAA 57.587 34.783 5.81 0.00 31.23 3.28
79 80 5.175127 ACAAATGTTGAGTTGGTTCCAAAC 58.825 37.500 5.81 2.01 31.23 2.93
80 81 5.046663 ACAAATGTTGAGTTGGTTCCAAACT 60.047 36.000 5.81 6.19 31.23 2.66
81 82 4.654091 ATGTTGAGTTGGTTCCAAACTG 57.346 40.909 5.81 0.00 0.00 3.16
82 83 3.691575 TGTTGAGTTGGTTCCAAACTGA 58.308 40.909 5.81 0.00 0.00 3.41
83 84 3.694072 TGTTGAGTTGGTTCCAAACTGAG 59.306 43.478 5.81 0.00 0.00 3.35
84 85 2.930950 TGAGTTGGTTCCAAACTGAGG 58.069 47.619 5.81 0.00 0.00 3.86
85 86 1.609072 GAGTTGGTTCCAAACTGAGGC 59.391 52.381 5.81 0.00 0.00 4.70
86 87 0.673985 GTTGGTTCCAAACTGAGGCC 59.326 55.000 5.81 0.00 0.00 5.19
87 88 0.821711 TTGGTTCCAAACTGAGGCCG 60.822 55.000 0.00 0.00 0.00 6.13
88 89 2.626780 GGTTCCAAACTGAGGCCGC 61.627 63.158 0.00 0.00 0.00 6.53
89 90 1.600916 GTTCCAAACTGAGGCCGCT 60.601 57.895 8.34 0.00 0.00 5.52
90 91 1.302511 TTCCAAACTGAGGCCGCTC 60.303 57.895 8.34 0.00 0.00 5.03
91 92 3.121030 CCAAACTGAGGCCGCTCG 61.121 66.667 8.34 1.13 0.00 5.03
92 93 2.357517 CAAACTGAGGCCGCTCGT 60.358 61.111 8.34 1.83 0.00 4.18
93 94 2.357517 AAACTGAGGCCGCTCGTG 60.358 61.111 8.34 0.00 0.00 4.35
94 95 3.165160 AAACTGAGGCCGCTCGTGT 62.165 57.895 8.34 0.00 0.00 4.49
95 96 3.865929 AACTGAGGCCGCTCGTGTG 62.866 63.158 8.34 0.00 0.00 3.82
96 97 4.363990 CTGAGGCCGCTCGTGTGT 62.364 66.667 8.34 0.00 0.00 3.72
97 98 2.986979 TGAGGCCGCTCGTGTGTA 60.987 61.111 8.34 0.00 0.00 2.90
98 99 2.202623 GAGGCCGCTCGTGTGTAG 60.203 66.667 0.00 0.00 0.00 2.74
99 100 3.701604 GAGGCCGCTCGTGTGTAGG 62.702 68.421 0.00 0.00 0.00 3.18
100 101 3.755628 GGCCGCTCGTGTGTAGGA 61.756 66.667 0.00 0.00 0.00 2.94
101 102 2.202623 GCCGCTCGTGTGTAGGAG 60.203 66.667 0.00 0.00 40.80 3.69
102 103 2.697761 GCCGCTCGTGTGTAGGAGA 61.698 63.158 0.00 0.00 40.41 3.71
103 104 1.136984 CCGCTCGTGTGTAGGAGAC 59.863 63.158 0.00 0.00 40.41 3.36
104 105 1.226046 CGCTCGTGTGTAGGAGACG 60.226 63.158 0.00 0.00 42.62 4.18
108 109 1.596603 TCGTGTGTAGGAGACGAACA 58.403 50.000 0.00 0.00 46.52 3.18
109 110 1.948834 TCGTGTGTAGGAGACGAACAA 59.051 47.619 0.00 0.00 46.52 2.83
110 111 2.358582 TCGTGTGTAGGAGACGAACAAA 59.641 45.455 0.00 0.00 46.52 2.83
111 112 3.005050 TCGTGTGTAGGAGACGAACAAAT 59.995 43.478 0.00 0.00 46.52 2.32
112 113 3.121279 CGTGTGTAGGAGACGAACAAATG 59.879 47.826 0.00 0.00 43.96 2.32
113 114 3.432252 GTGTGTAGGAGACGAACAAATGG 59.568 47.826 0.00 0.00 33.76 3.16
114 115 3.322541 TGTGTAGGAGACGAACAAATGGA 59.677 43.478 0.00 0.00 33.76 3.41
115 116 3.678548 GTGTAGGAGACGAACAAATGGAC 59.321 47.826 0.00 0.00 33.76 4.02
116 117 2.080286 AGGAGACGAACAAATGGACG 57.920 50.000 0.00 0.00 0.00 4.79
117 118 1.076332 GGAGACGAACAAATGGACGG 58.924 55.000 0.00 0.00 0.00 4.79
118 119 1.337447 GGAGACGAACAAATGGACGGA 60.337 52.381 0.00 0.00 0.00 4.69
119 120 2.409975 GAGACGAACAAATGGACGGAA 58.590 47.619 0.00 0.00 0.00 4.30
120 121 2.412089 GAGACGAACAAATGGACGGAAG 59.588 50.000 0.00 0.00 0.00 3.46
132 133 3.888093 ACGGAAGTTTCGTCCTCAG 57.112 52.632 2.52 0.00 46.40 3.35
133 134 1.038280 ACGGAAGTTTCGTCCTCAGT 58.962 50.000 2.52 0.00 46.40 3.41
134 135 1.269621 ACGGAAGTTTCGTCCTCAGTG 60.270 52.381 2.52 0.00 46.40 3.66
135 136 1.149148 GGAAGTTTCGTCCTCAGTGC 58.851 55.000 0.00 0.00 31.94 4.40
136 137 1.540363 GGAAGTTTCGTCCTCAGTGCA 60.540 52.381 0.00 0.00 31.94 4.57
137 138 1.795286 GAAGTTTCGTCCTCAGTGCAG 59.205 52.381 0.00 0.00 0.00 4.41
138 139 0.034059 AGTTTCGTCCTCAGTGCAGG 59.966 55.000 0.00 3.04 34.40 4.85
139 140 0.033504 GTTTCGTCCTCAGTGCAGGA 59.966 55.000 7.10 7.10 40.56 3.86
143 144 4.056125 TCCTCAGTGCAGGACGCG 62.056 66.667 3.53 3.53 46.97 6.01
144 145 4.363990 CCTCAGTGCAGGACGCGT 62.364 66.667 13.85 13.85 46.97 6.01
145 146 2.566529 CTCAGTGCAGGACGCGTA 59.433 61.111 13.97 0.00 46.97 4.42
146 147 1.515088 CTCAGTGCAGGACGCGTAG 60.515 63.158 13.97 6.60 46.97 3.51
147 148 2.507102 CAGTGCAGGACGCGTAGG 60.507 66.667 13.97 5.72 46.97 3.18
148 149 2.989824 AGTGCAGGACGCGTAGGT 60.990 61.111 13.97 0.00 46.97 3.08
149 150 2.809601 GTGCAGGACGCGTAGGTG 60.810 66.667 13.97 11.39 46.97 4.00
150 151 4.735132 TGCAGGACGCGTAGGTGC 62.735 66.667 25.15 25.15 46.97 5.01
151 152 4.735132 GCAGGACGCGTAGGTGCA 62.735 66.667 26.29 0.00 34.18 4.57
152 153 2.048597 CAGGACGCGTAGGTGCAA 60.049 61.111 13.97 0.00 34.15 4.08
153 154 2.094659 CAGGACGCGTAGGTGCAAG 61.095 63.158 13.97 0.00 34.15 4.01
154 155 2.260434 GGACGCGTAGGTGCAAGA 59.740 61.111 13.97 0.00 34.15 3.02
155 156 1.373748 GGACGCGTAGGTGCAAGAA 60.374 57.895 13.97 0.00 34.15 2.52
156 157 1.352156 GGACGCGTAGGTGCAAGAAG 61.352 60.000 13.97 0.00 34.15 2.85
157 158 1.352156 GACGCGTAGGTGCAAGAAGG 61.352 60.000 13.97 0.00 34.15 3.46
158 159 2.100631 CGCGTAGGTGCAAGAAGGG 61.101 63.158 0.00 0.00 34.15 3.95
159 160 1.295423 GCGTAGGTGCAAGAAGGGA 59.705 57.895 0.00 0.00 34.15 4.20
160 161 0.321298 GCGTAGGTGCAAGAAGGGAA 60.321 55.000 0.00 0.00 34.15 3.97
161 162 1.726853 CGTAGGTGCAAGAAGGGAAG 58.273 55.000 0.00 0.00 0.00 3.46
162 163 1.275291 CGTAGGTGCAAGAAGGGAAGA 59.725 52.381 0.00 0.00 0.00 2.87
163 164 2.289444 CGTAGGTGCAAGAAGGGAAGAA 60.289 50.000 0.00 0.00 0.00 2.52
164 165 3.751518 GTAGGTGCAAGAAGGGAAGAAA 58.248 45.455 0.00 0.00 0.00 2.52
165 166 3.532641 AGGTGCAAGAAGGGAAGAAAT 57.467 42.857 0.00 0.00 0.00 2.17
166 167 3.849527 AGGTGCAAGAAGGGAAGAAATT 58.150 40.909 0.00 0.00 0.00 1.82
167 168 3.829026 AGGTGCAAGAAGGGAAGAAATTC 59.171 43.478 0.00 0.00 0.00 2.17
168 169 3.829026 GGTGCAAGAAGGGAAGAAATTCT 59.171 43.478 0.00 0.00 34.81 2.40
169 170 4.281941 GGTGCAAGAAGGGAAGAAATTCTT 59.718 41.667 8.12 8.12 42.49 2.52
179 180 3.813529 AAGAAATTCTTCACGAAGCGG 57.186 42.857 1.80 0.00 38.28 5.52
180 181 2.767505 AGAAATTCTTCACGAAGCGGT 58.232 42.857 1.75 0.00 38.28 5.68
181 182 3.139077 AGAAATTCTTCACGAAGCGGTT 58.861 40.909 0.00 0.00 38.28 4.44
182 183 3.186613 AGAAATTCTTCACGAAGCGGTTC 59.813 43.478 17.24 17.24 38.28 3.62
183 184 2.163818 ATTCTTCACGAAGCGGTTCA 57.836 45.000 25.46 4.98 38.28 3.18
184 185 1.214367 TTCTTCACGAAGCGGTTCAC 58.786 50.000 25.46 2.02 38.28 3.18
185 186 0.599204 TCTTCACGAAGCGGTTCACC 60.599 55.000 25.46 1.27 38.28 4.02
186 187 0.600255 CTTCACGAAGCGGTTCACCT 60.600 55.000 25.46 5.82 32.36 4.00
187 188 0.878523 TTCACGAAGCGGTTCACCTG 60.879 55.000 25.46 16.67 32.36 4.00
188 189 2.030562 ACGAAGCGGTTCACCTGG 59.969 61.111 25.46 12.11 32.36 4.45
189 190 2.742372 CGAAGCGGTTCACCTGGG 60.742 66.667 25.46 5.78 32.36 4.45
190 191 2.430367 GAAGCGGTTCACCTGGGT 59.570 61.111 21.83 0.00 32.36 4.51
191 192 1.966451 GAAGCGGTTCACCTGGGTG 60.966 63.158 21.83 13.12 46.64 4.61
192 193 4.643387 AGCGGTTCACCTGGGTGC 62.643 66.667 14.35 3.18 45.04 5.01
195 196 3.897122 GGTTCACCTGGGTGCCCA 61.897 66.667 14.35 9.90 45.04 5.36
203 204 2.606213 TGGGTGCCCAGACGATCA 60.606 61.111 5.73 0.00 41.89 2.92
204 205 2.187946 GGGTGCCCAGACGATCAG 59.812 66.667 1.66 0.00 35.81 2.90
205 206 2.359169 GGGTGCCCAGACGATCAGA 61.359 63.158 1.66 0.00 35.81 3.27
206 207 1.596934 GGTGCCCAGACGATCAGAA 59.403 57.895 0.00 0.00 0.00 3.02
207 208 0.036388 GGTGCCCAGACGATCAGAAA 60.036 55.000 0.00 0.00 0.00 2.52
208 209 1.079503 GTGCCCAGACGATCAGAAAC 58.920 55.000 0.00 0.00 0.00 2.78
209 210 0.036388 TGCCCAGACGATCAGAAACC 60.036 55.000 0.00 0.00 0.00 3.27
210 211 0.036388 GCCCAGACGATCAGAAACCA 60.036 55.000 0.00 0.00 0.00 3.67
211 212 1.610624 GCCCAGACGATCAGAAACCAA 60.611 52.381 0.00 0.00 0.00 3.67
212 213 2.350522 CCCAGACGATCAGAAACCAAG 58.649 52.381 0.00 0.00 0.00 3.61
213 214 2.028112 CCCAGACGATCAGAAACCAAGA 60.028 50.000 0.00 0.00 0.00 3.02
214 215 3.257393 CCAGACGATCAGAAACCAAGAG 58.743 50.000 0.00 0.00 0.00 2.85
215 216 3.056536 CCAGACGATCAGAAACCAAGAGA 60.057 47.826 0.00 0.00 0.00 3.10
216 217 3.923461 CAGACGATCAGAAACCAAGAGAC 59.077 47.826 0.00 0.00 0.00 3.36
217 218 3.574396 AGACGATCAGAAACCAAGAGACA 59.426 43.478 0.00 0.00 0.00 3.41
218 219 3.654414 ACGATCAGAAACCAAGAGACAC 58.346 45.455 0.00 0.00 0.00 3.67
219 220 3.069586 ACGATCAGAAACCAAGAGACACA 59.930 43.478 0.00 0.00 0.00 3.72
220 221 4.248859 CGATCAGAAACCAAGAGACACAT 58.751 43.478 0.00 0.00 0.00 3.21
221 222 5.047306 ACGATCAGAAACCAAGAGACACATA 60.047 40.000 0.00 0.00 0.00 2.29
222 223 5.518128 CGATCAGAAACCAAGAGACACATAG 59.482 44.000 0.00 0.00 0.00 2.23
223 224 6.611613 ATCAGAAACCAAGAGACACATAGA 57.388 37.500 0.00 0.00 0.00 1.98
224 225 6.611613 TCAGAAACCAAGAGACACATAGAT 57.388 37.500 0.00 0.00 0.00 1.98
225 226 6.634805 TCAGAAACCAAGAGACACATAGATC 58.365 40.000 0.00 0.00 0.00 2.75
226 227 5.814705 CAGAAACCAAGAGACACATAGATCC 59.185 44.000 0.00 0.00 0.00 3.36
227 228 5.723887 AGAAACCAAGAGACACATAGATCCT 59.276 40.000 0.00 0.00 0.00 3.24
228 229 5.350504 AACCAAGAGACACATAGATCCTG 57.649 43.478 0.00 0.00 0.00 3.86
229 230 4.614475 ACCAAGAGACACATAGATCCTGA 58.386 43.478 0.16 0.00 0.00 3.86
230 231 5.215069 ACCAAGAGACACATAGATCCTGAT 58.785 41.667 0.16 0.00 0.00 2.90
231 232 5.304101 ACCAAGAGACACATAGATCCTGATC 59.696 44.000 0.00 0.00 38.09 2.92
232 233 5.459768 CAAGAGACACATAGATCCTGATCG 58.540 45.833 1.67 0.00 42.48 3.69
233 234 4.724399 AGAGACACATAGATCCTGATCGT 58.276 43.478 1.67 0.00 42.48 3.73
234 235 5.136828 AGAGACACATAGATCCTGATCGTT 58.863 41.667 1.67 0.00 42.48 3.85
235 236 6.299922 AGAGACACATAGATCCTGATCGTTA 58.700 40.000 1.67 0.00 42.48 3.18
236 237 6.945435 AGAGACACATAGATCCTGATCGTTAT 59.055 38.462 1.67 0.00 42.48 1.89
237 238 8.103935 AGAGACACATAGATCCTGATCGTTATA 58.896 37.037 1.67 0.00 42.48 0.98
238 239 8.275015 AGACACATAGATCCTGATCGTTATAG 57.725 38.462 1.67 0.00 42.48 1.31
239 240 7.338196 AGACACATAGATCCTGATCGTTATAGG 59.662 40.741 1.67 0.00 42.48 2.57
240 241 6.378564 ACACATAGATCCTGATCGTTATAGGG 59.621 42.308 1.67 0.00 42.48 3.53
241 242 6.603599 CACATAGATCCTGATCGTTATAGGGA 59.396 42.308 1.67 0.00 42.48 4.20
242 243 6.831353 ACATAGATCCTGATCGTTATAGGGAG 59.169 42.308 1.67 0.00 42.48 4.30
243 244 4.605183 AGATCCTGATCGTTATAGGGAGG 58.395 47.826 1.67 0.00 42.48 4.30
244 245 3.897657 TCCTGATCGTTATAGGGAGGT 57.102 47.619 0.00 0.00 32.39 3.85
245 246 3.497332 TCCTGATCGTTATAGGGAGGTG 58.503 50.000 0.00 0.00 32.39 4.00
246 247 2.028930 CCTGATCGTTATAGGGAGGTGC 60.029 54.545 0.00 0.00 0.00 5.01
247 248 1.611977 TGATCGTTATAGGGAGGTGCG 59.388 52.381 0.00 0.00 0.00 5.34
248 249 1.612463 GATCGTTATAGGGAGGTGCGT 59.388 52.381 0.00 0.00 0.00 5.24
249 250 2.346766 TCGTTATAGGGAGGTGCGTA 57.653 50.000 0.00 0.00 0.00 4.42
250 251 2.224606 TCGTTATAGGGAGGTGCGTAG 58.775 52.381 0.00 0.00 0.00 3.51
251 252 2.158769 TCGTTATAGGGAGGTGCGTAGA 60.159 50.000 0.00 0.00 0.00 2.59
252 253 2.620115 CGTTATAGGGAGGTGCGTAGAA 59.380 50.000 0.00 0.00 0.00 2.10
253 254 3.549625 CGTTATAGGGAGGTGCGTAGAAC 60.550 52.174 0.32 0.32 0.00 3.01
254 255 2.456073 ATAGGGAGGTGCGTAGAACT 57.544 50.000 0.00 0.00 0.00 3.01
255 256 1.760192 TAGGGAGGTGCGTAGAACTC 58.240 55.000 0.00 0.00 0.00 3.01
256 257 0.251653 AGGGAGGTGCGTAGAACTCA 60.252 55.000 0.00 0.00 0.00 3.41
257 258 0.606604 GGGAGGTGCGTAGAACTCAA 59.393 55.000 0.00 0.00 0.00 3.02
258 259 1.404315 GGGAGGTGCGTAGAACTCAAG 60.404 57.143 0.00 0.00 0.00 3.02
259 260 1.544691 GGAGGTGCGTAGAACTCAAGA 59.455 52.381 0.00 0.00 0.00 3.02
260 261 2.597520 GAGGTGCGTAGAACTCAAGAC 58.402 52.381 0.00 0.00 0.00 3.01
261 262 1.961394 AGGTGCGTAGAACTCAAGACA 59.039 47.619 0.00 0.00 0.00 3.41
262 263 2.364324 AGGTGCGTAGAACTCAAGACAA 59.636 45.455 0.00 0.00 0.00 3.18
263 264 3.128349 GGTGCGTAGAACTCAAGACAAA 58.872 45.455 0.00 0.00 0.00 2.83
264 265 3.558418 GGTGCGTAGAACTCAAGACAAAA 59.442 43.478 0.00 0.00 0.00 2.44
265 266 4.213482 GGTGCGTAGAACTCAAGACAAAAT 59.787 41.667 0.00 0.00 0.00 1.82
266 267 5.407387 GGTGCGTAGAACTCAAGACAAAATA 59.593 40.000 0.00 0.00 0.00 1.40
267 268 6.297353 GTGCGTAGAACTCAAGACAAAATAC 58.703 40.000 0.00 0.00 0.00 1.89
268 269 6.145696 GTGCGTAGAACTCAAGACAAAATACT 59.854 38.462 0.00 0.00 0.00 2.12
269 270 7.327761 GTGCGTAGAACTCAAGACAAAATACTA 59.672 37.037 0.00 0.00 0.00 1.82
270 271 7.327761 TGCGTAGAACTCAAGACAAAATACTAC 59.672 37.037 0.00 0.00 0.00 2.73
271 272 7.541437 GCGTAGAACTCAAGACAAAATACTACT 59.459 37.037 0.00 0.00 0.00 2.57
272 273 9.063739 CGTAGAACTCAAGACAAAATACTACTC 57.936 37.037 0.00 0.00 0.00 2.59
273 274 9.356433 GTAGAACTCAAGACAAAATACTACTCC 57.644 37.037 0.00 0.00 0.00 3.85
274 275 7.387643 AGAACTCAAGACAAAATACTACTCCC 58.612 38.462 0.00 0.00 0.00 4.30
275 276 6.936968 ACTCAAGACAAAATACTACTCCCT 57.063 37.500 0.00 0.00 0.00 4.20
276 277 6.937392 ACTCAAGACAAAATACTACTCCCTC 58.063 40.000 0.00 0.00 0.00 4.30
277 278 6.070710 ACTCAAGACAAAATACTACTCCCTCC 60.071 42.308 0.00 0.00 0.00 4.30
278 279 5.105473 TCAAGACAAAATACTACTCCCTCCG 60.105 44.000 0.00 0.00 0.00 4.63
279 280 4.351127 AGACAAAATACTACTCCCTCCGT 58.649 43.478 0.00 0.00 0.00 4.69
280 281 4.776308 AGACAAAATACTACTCCCTCCGTT 59.224 41.667 0.00 0.00 0.00 4.44
281 282 5.082251 ACAAAATACTACTCCCTCCGTTC 57.918 43.478 0.00 0.00 0.00 3.95
282 283 4.081254 ACAAAATACTACTCCCTCCGTTCC 60.081 45.833 0.00 0.00 0.00 3.62
283 284 3.393426 AATACTACTCCCTCCGTTCCA 57.607 47.619 0.00 0.00 0.00 3.53
284 285 3.614568 ATACTACTCCCTCCGTTCCAT 57.385 47.619 0.00 0.00 0.00 3.41
285 286 4.736611 ATACTACTCCCTCCGTTCCATA 57.263 45.455 0.00 0.00 0.00 2.74
286 287 3.393426 ACTACTCCCTCCGTTCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
287 288 3.924922 ACTACTCCCTCCGTTCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
288 289 5.070823 ACTACTCCCTCCGTTCCATAATA 57.929 43.478 0.00 0.00 0.00 0.98
289 290 5.652324 ACTACTCCCTCCGTTCCATAATAT 58.348 41.667 0.00 0.00 0.00 1.28
290 291 6.797707 ACTACTCCCTCCGTTCCATAATATA 58.202 40.000 0.00 0.00 0.00 0.86
291 292 7.243824 ACTACTCCCTCCGTTCCATAATATAA 58.756 38.462 0.00 0.00 0.00 0.98
292 293 6.607004 ACTCCCTCCGTTCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
293 294 6.320518 ACTCCCTCCGTTCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
294 295 6.785963 ACTCCCTCCGTTCCATAATATAAGAA 59.214 38.462 0.00 0.00 0.00 2.52
295 296 7.458170 ACTCCCTCCGTTCCATAATATAAGAAT 59.542 37.037 0.00 0.00 0.00 2.40
296 297 7.620880 TCCCTCCGTTCCATAATATAAGAATG 58.379 38.462 0.00 0.00 0.00 2.67
297 298 7.236847 TCCCTCCGTTCCATAATATAAGAATGT 59.763 37.037 0.00 0.00 0.00 2.71
298 299 7.883311 CCCTCCGTTCCATAATATAAGAATGTT 59.117 37.037 0.00 0.00 0.00 2.71
299 300 9.284968 CCTCCGTTCCATAATATAAGAATGTTT 57.715 33.333 0.00 0.00 0.00 2.83
345 346 9.435688 AAAATGTTTTTATATTCTTGGACAGCC 57.564 29.630 0.00 0.00 0.00 4.85
346 347 7.961326 ATGTTTTTATATTCTTGGACAGCCT 57.039 32.000 0.00 0.00 34.31 4.58
347 348 7.156876 TGTTTTTATATTCTTGGACAGCCTG 57.843 36.000 0.00 0.00 34.31 4.85
348 349 6.945435 TGTTTTTATATTCTTGGACAGCCTGA 59.055 34.615 0.00 0.00 34.31 3.86
349 350 7.450014 TGTTTTTATATTCTTGGACAGCCTGAA 59.550 33.333 0.00 0.00 34.02 3.02
350 351 8.303876 GTTTTTATATTCTTGGACAGCCTGAAA 58.696 33.333 0.00 0.00 33.53 2.69
351 352 8.415950 TTTTATATTCTTGGACAGCCTGAAAA 57.584 30.769 0.00 0.00 33.53 2.29
352 353 8.415950 TTTATATTCTTGGACAGCCTGAAAAA 57.584 30.769 0.00 0.00 33.53 1.94
353 354 4.590850 ATTCTTGGACAGCCTGAAAAAC 57.409 40.909 0.00 0.00 33.53 2.43
354 355 1.946768 TCTTGGACAGCCTGAAAAACG 59.053 47.619 0.00 0.00 34.31 3.60
355 356 1.676006 CTTGGACAGCCTGAAAAACGT 59.324 47.619 0.00 0.00 34.31 3.99
356 357 1.757682 TGGACAGCCTGAAAAACGTT 58.242 45.000 0.00 0.00 34.31 3.99
357 358 2.096248 TGGACAGCCTGAAAAACGTTT 58.904 42.857 7.96 7.96 34.31 3.60
358 359 2.494073 TGGACAGCCTGAAAAACGTTTT 59.506 40.909 20.26 20.26 34.31 2.43
359 360 3.056465 TGGACAGCCTGAAAAACGTTTTT 60.056 39.130 32.90 32.90 37.82 1.94
360 361 4.158025 TGGACAGCCTGAAAAACGTTTTTA 59.842 37.500 32.57 21.04 36.43 1.52
361 362 5.163499 TGGACAGCCTGAAAAACGTTTTTAT 60.163 36.000 32.57 17.06 36.43 1.40
362 363 6.039493 TGGACAGCCTGAAAAACGTTTTTATA 59.961 34.615 32.57 23.98 36.43 0.98
363 364 7.088272 GGACAGCCTGAAAAACGTTTTTATAT 58.912 34.615 32.57 16.01 40.21 0.86
364 365 7.597369 GGACAGCCTGAAAAACGTTTTTATATT 59.403 33.333 32.57 15.65 40.21 1.28
365 366 9.615295 GACAGCCTGAAAAACGTTTTTATATTA 57.385 29.630 32.57 18.00 40.21 0.98
368 369 9.581099 AGCCTGAAAAACGTTTTTATATTATGG 57.419 29.630 32.57 24.68 40.21 2.74
369 370 8.813282 GCCTGAAAAACGTTTTTATATTATGGG 58.187 33.333 32.57 23.82 40.21 4.00
374 375 9.863845 AAAAACGTTTTTATATTATGGGACAGG 57.136 29.630 31.82 0.00 39.38 4.00
384 385 2.307153 TGGGACAGGGGAAGTATGC 58.693 57.895 0.00 0.00 0.00 3.14
385 386 1.279025 TGGGACAGGGGAAGTATGCC 61.279 60.000 0.00 0.00 36.03 4.40
386 387 1.279025 GGGACAGGGGAAGTATGCCA 61.279 60.000 0.00 0.00 32.29 4.92
387 388 0.846693 GGACAGGGGAAGTATGCCAT 59.153 55.000 0.00 0.00 32.29 4.40
388 389 2.054799 GGACAGGGGAAGTATGCCATA 58.945 52.381 0.00 0.00 32.29 2.74
389 390 2.644798 GGACAGGGGAAGTATGCCATAT 59.355 50.000 0.00 0.00 32.29 1.78
390 391 3.307762 GGACAGGGGAAGTATGCCATATC 60.308 52.174 0.00 0.00 32.29 1.63
689 690 1.916181 AGGGTCATCGGTTCAAATCCT 59.084 47.619 0.00 0.00 0.00 3.24
1265 1275 9.685828 GGTTTTACTACAATTACTTGAAATGCA 57.314 29.630 0.00 0.00 36.20 3.96
1483 1495 1.191489 CCCGGGGAAATTGCCAAAGT 61.191 55.000 14.71 0.00 0.00 2.66
1570 1582 5.795441 GTCGGTCTCAAAATAAATGAGTTGC 59.205 40.000 3.72 0.00 43.77 4.17
1573 1585 6.961554 CGGTCTCAAAATAAATGAGTTGCTAC 59.038 38.462 3.72 0.00 43.77 3.58
1614 1626 5.806502 TCGTCAGACTTGAACTTAACGAAAA 59.193 36.000 0.00 0.00 34.49 2.29
1903 1917 5.123820 ACATTGTGATCCTTAACGTTGATGG 59.876 40.000 11.99 10.15 0.00 3.51
1909 1923 7.065324 TGTGATCCTTAACGTTGATGGATTAAC 59.935 37.037 22.99 22.27 37.62 2.01
1915 1929 9.418045 CCTTAACGTTGATGGATTAACAAAAAT 57.582 29.630 11.99 0.00 0.00 1.82
1962 1976 5.870978 TCGGTAAACAAAAGTCTACATAGCC 59.129 40.000 0.00 0.00 0.00 3.93
1991 2005 2.814183 CTACGCCTTGAACCGCTCGT 62.814 60.000 0.00 0.00 0.00 4.18
2098 2112 0.909623 ACTCGGGGGTTCCATAGTTG 59.090 55.000 0.00 0.00 34.36 3.16
2141 2155 7.862274 TGATCTAAGTGGAAGGATACATGAT 57.138 36.000 0.00 0.00 41.41 2.45
2213 2231 5.756347 GGTTTTCCCGCAACTAAAGAAAAAT 59.244 36.000 0.00 0.00 37.95 1.82
2475 2508 4.240096 CAATTTGAGCTGAGCGGAAAATT 58.760 39.130 16.50 16.50 33.54 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.068064 CCCGGCCATGGTTTCCAC 61.068 66.667 14.67 0.00 35.80 4.02
1 2 3.585428 ACCCGGCCATGGTTTCCA 61.585 61.111 14.67 0.00 38.19 3.53
2 3 3.068064 CACCCGGCCATGGTTTCC 61.068 66.667 14.67 5.12 32.46 3.13
3 4 2.034999 TCACCCGGCCATGGTTTC 59.965 61.111 14.67 2.71 32.46 2.78
4 5 2.035626 CTCACCCGGCCATGGTTT 59.964 61.111 14.67 0.00 32.46 3.27
5 6 4.740822 GCTCACCCGGCCATGGTT 62.741 66.667 14.67 0.00 32.46 3.67
14 15 4.504916 CTCTCCGCTGCTCACCCG 62.505 72.222 0.00 0.00 0.00 5.28
15 16 2.650116 TTCTCTCCGCTGCTCACCC 61.650 63.158 0.00 0.00 0.00 4.61
16 17 1.446966 GTTCTCTCCGCTGCTCACC 60.447 63.158 0.00 0.00 0.00 4.02
17 18 1.446966 GGTTCTCTCCGCTGCTCAC 60.447 63.158 0.00 0.00 0.00 3.51
18 19 1.599606 GAGGTTCTCTCCGCTGCTCA 61.600 60.000 0.00 0.00 36.52 4.26
19 20 1.140804 GAGGTTCTCTCCGCTGCTC 59.859 63.158 0.00 0.00 36.52 4.26
20 21 2.705821 CGAGGTTCTCTCCGCTGCT 61.706 63.158 0.00 0.00 39.30 4.24
21 22 2.202676 CGAGGTTCTCTCCGCTGC 60.203 66.667 0.00 0.00 39.30 5.25
22 23 0.734253 CAACGAGGTTCTCTCCGCTG 60.734 60.000 0.00 0.00 39.30 5.18
23 24 0.894184 TCAACGAGGTTCTCTCCGCT 60.894 55.000 0.00 0.00 39.30 5.52
24 25 0.173708 ATCAACGAGGTTCTCTCCGC 59.826 55.000 0.00 0.00 39.30 5.54
25 26 1.469940 CCATCAACGAGGTTCTCTCCG 60.470 57.143 0.00 0.00 39.30 4.63
26 27 1.825474 TCCATCAACGAGGTTCTCTCC 59.175 52.381 0.00 0.00 39.30 3.71
27 28 2.755655 TCTCCATCAACGAGGTTCTCTC 59.244 50.000 0.00 0.00 39.10 3.20
28 29 2.757868 CTCTCCATCAACGAGGTTCTCT 59.242 50.000 0.00 0.00 0.00 3.10
29 30 2.159170 CCTCTCCATCAACGAGGTTCTC 60.159 54.545 0.00 0.00 39.54 2.87
30 31 1.827969 CCTCTCCATCAACGAGGTTCT 59.172 52.381 0.00 0.00 39.54 3.01
31 32 1.825474 TCCTCTCCATCAACGAGGTTC 59.175 52.381 0.00 0.00 43.73 3.62
32 33 1.938585 TCCTCTCCATCAACGAGGTT 58.061 50.000 0.00 0.00 43.73 3.50
33 34 1.938585 TTCCTCTCCATCAACGAGGT 58.061 50.000 0.00 0.00 43.73 3.85
34 35 2.419297 CCTTTCCTCTCCATCAACGAGG 60.419 54.545 0.00 0.00 44.48 4.63
35 36 2.497675 TCCTTTCCTCTCCATCAACGAG 59.502 50.000 0.00 0.00 0.00 4.18
36 37 2.233922 GTCCTTTCCTCTCCATCAACGA 59.766 50.000 0.00 0.00 0.00 3.85
37 38 2.028112 TGTCCTTTCCTCTCCATCAACG 60.028 50.000 0.00 0.00 0.00 4.10
38 39 3.703001 TGTCCTTTCCTCTCCATCAAC 57.297 47.619 0.00 0.00 0.00 3.18
39 40 4.722526 TTTGTCCTTTCCTCTCCATCAA 57.277 40.909 0.00 0.00 0.00 2.57
40 41 4.043310 ACATTTGTCCTTTCCTCTCCATCA 59.957 41.667 0.00 0.00 0.00 3.07
41 42 4.593956 ACATTTGTCCTTTCCTCTCCATC 58.406 43.478 0.00 0.00 0.00 3.51
42 43 4.664688 ACATTTGTCCTTTCCTCTCCAT 57.335 40.909 0.00 0.00 0.00 3.41
43 44 4.141274 TCAACATTTGTCCTTTCCTCTCCA 60.141 41.667 0.00 0.00 0.00 3.86
44 45 4.398319 TCAACATTTGTCCTTTCCTCTCC 58.602 43.478 0.00 0.00 0.00 3.71
45 46 5.066593 ACTCAACATTTGTCCTTTCCTCTC 58.933 41.667 0.00 0.00 0.00 3.20
46 47 5.053978 ACTCAACATTTGTCCTTTCCTCT 57.946 39.130 0.00 0.00 0.00 3.69
47 48 5.507985 CCAACTCAACATTTGTCCTTTCCTC 60.508 44.000 0.00 0.00 0.00 3.71
48 49 4.342092 CCAACTCAACATTTGTCCTTTCCT 59.658 41.667 0.00 0.00 0.00 3.36
49 50 4.099419 ACCAACTCAACATTTGTCCTTTCC 59.901 41.667 0.00 0.00 0.00 3.13
50 51 5.262588 ACCAACTCAACATTTGTCCTTTC 57.737 39.130 0.00 0.00 0.00 2.62
51 52 5.395214 GGAACCAACTCAACATTTGTCCTTT 60.395 40.000 0.00 0.00 0.00 3.11
52 53 4.099419 GGAACCAACTCAACATTTGTCCTT 59.901 41.667 0.00 0.00 0.00 3.36
53 54 3.636764 GGAACCAACTCAACATTTGTCCT 59.363 43.478 0.00 0.00 0.00 3.85
54 55 3.383185 TGGAACCAACTCAACATTTGTCC 59.617 43.478 0.00 0.00 0.00 4.02
55 56 4.647424 TGGAACCAACTCAACATTTGTC 57.353 40.909 0.00 0.00 0.00 3.18
56 57 5.046663 AGTTTGGAACCAACTCAACATTTGT 60.047 36.000 5.73 0.00 35.46 2.83
57 58 5.291614 CAGTTTGGAACCAACTCAACATTTG 59.708 40.000 5.73 0.00 35.46 2.32
58 59 5.186797 TCAGTTTGGAACCAACTCAACATTT 59.813 36.000 5.73 0.00 35.46 2.32
59 60 4.709397 TCAGTTTGGAACCAACTCAACATT 59.291 37.500 5.73 0.00 35.46 2.71
60 61 4.277476 TCAGTTTGGAACCAACTCAACAT 58.723 39.130 5.73 0.00 35.46 2.71
61 62 3.691575 TCAGTTTGGAACCAACTCAACA 58.308 40.909 5.73 0.00 35.46 3.33
62 63 3.066760 CCTCAGTTTGGAACCAACTCAAC 59.933 47.826 5.73 2.30 35.46 3.18
63 64 3.287222 CCTCAGTTTGGAACCAACTCAA 58.713 45.455 5.73 0.00 35.46 3.02
64 65 2.930950 CCTCAGTTTGGAACCAACTCA 58.069 47.619 5.73 0.00 35.46 3.41
65 66 1.609072 GCCTCAGTTTGGAACCAACTC 59.391 52.381 5.73 3.32 35.46 3.01
66 67 1.692411 GCCTCAGTTTGGAACCAACT 58.308 50.000 5.73 4.66 35.46 3.16
67 68 0.673985 GGCCTCAGTTTGGAACCAAC 59.326 55.000 5.73 2.56 35.46 3.77
68 69 0.821711 CGGCCTCAGTTTGGAACCAA 60.822 55.000 0.00 1.83 0.00 3.67
69 70 1.228124 CGGCCTCAGTTTGGAACCA 60.228 57.895 0.00 0.00 0.00 3.67
70 71 2.626780 GCGGCCTCAGTTTGGAACC 61.627 63.158 0.00 0.00 0.00 3.62
71 72 1.578206 GAGCGGCCTCAGTTTGGAAC 61.578 60.000 0.00 0.00 38.03 3.62
72 73 1.302511 GAGCGGCCTCAGTTTGGAA 60.303 57.895 0.00 0.00 38.03 3.53
73 74 2.347490 GAGCGGCCTCAGTTTGGA 59.653 61.111 0.00 0.00 38.03 3.53
74 75 3.121030 CGAGCGGCCTCAGTTTGG 61.121 66.667 0.00 0.00 38.00 3.28
75 76 2.357517 ACGAGCGGCCTCAGTTTG 60.358 61.111 0.00 0.00 38.00 2.93
76 77 2.357517 CACGAGCGGCCTCAGTTT 60.358 61.111 0.00 0.00 38.00 2.66
77 78 3.616721 ACACGAGCGGCCTCAGTT 61.617 61.111 0.00 0.00 38.00 3.16
78 79 4.363990 CACACGAGCGGCCTCAGT 62.364 66.667 0.00 0.00 38.00 3.41
79 80 2.874010 CTACACACGAGCGGCCTCAG 62.874 65.000 0.00 0.00 38.00 3.35
80 81 2.986979 TACACACGAGCGGCCTCA 60.987 61.111 0.00 0.00 38.00 3.86
81 82 2.202623 CTACACACGAGCGGCCTC 60.203 66.667 0.00 0.00 34.66 4.70
82 83 3.760035 CCTACACACGAGCGGCCT 61.760 66.667 0.00 0.00 0.00 5.19
83 84 3.701604 CTCCTACACACGAGCGGCC 62.702 68.421 0.00 0.00 0.00 6.13
84 85 2.202623 CTCCTACACACGAGCGGC 60.203 66.667 0.00 0.00 0.00 6.53
85 86 1.136984 GTCTCCTACACACGAGCGG 59.863 63.158 0.00 0.00 0.00 5.52
86 87 1.226046 CGTCTCCTACACACGAGCG 60.226 63.158 0.00 0.00 35.49 5.03
87 88 0.520404 TTCGTCTCCTACACACGAGC 59.480 55.000 0.00 0.00 43.05 5.03
88 89 1.534163 TGTTCGTCTCCTACACACGAG 59.466 52.381 0.00 0.00 43.05 4.18
89 90 1.596603 TGTTCGTCTCCTACACACGA 58.403 50.000 0.00 0.00 40.67 4.35
90 91 2.410785 TTGTTCGTCTCCTACACACG 57.589 50.000 0.00 0.00 34.78 4.49
91 92 3.432252 CCATTTGTTCGTCTCCTACACAC 59.568 47.826 0.00 0.00 0.00 3.82
92 93 3.322541 TCCATTTGTTCGTCTCCTACACA 59.677 43.478 0.00 0.00 0.00 3.72
93 94 3.678548 GTCCATTTGTTCGTCTCCTACAC 59.321 47.826 0.00 0.00 0.00 2.90
94 95 3.613193 CGTCCATTTGTTCGTCTCCTACA 60.613 47.826 0.00 0.00 0.00 2.74
95 96 2.921754 CGTCCATTTGTTCGTCTCCTAC 59.078 50.000 0.00 0.00 0.00 3.18
96 97 2.094390 CCGTCCATTTGTTCGTCTCCTA 60.094 50.000 0.00 0.00 0.00 2.94
97 98 1.337823 CCGTCCATTTGTTCGTCTCCT 60.338 52.381 0.00 0.00 0.00 3.69
98 99 1.076332 CCGTCCATTTGTTCGTCTCC 58.924 55.000 0.00 0.00 0.00 3.71
99 100 2.074547 TCCGTCCATTTGTTCGTCTC 57.925 50.000 0.00 0.00 0.00 3.36
100 101 2.224209 ACTTCCGTCCATTTGTTCGTCT 60.224 45.455 0.00 0.00 0.00 4.18
101 102 2.140717 ACTTCCGTCCATTTGTTCGTC 58.859 47.619 0.00 0.00 0.00 4.20
102 103 2.249844 ACTTCCGTCCATTTGTTCGT 57.750 45.000 0.00 0.00 0.00 3.85
103 104 3.551551 GAAACTTCCGTCCATTTGTTCG 58.448 45.455 0.00 0.00 0.00 3.95
104 105 3.002965 ACGAAACTTCCGTCCATTTGTTC 59.997 43.478 0.00 0.00 34.97 3.18
105 106 2.946990 ACGAAACTTCCGTCCATTTGTT 59.053 40.909 0.00 0.00 34.97 2.83
106 107 2.567985 ACGAAACTTCCGTCCATTTGT 58.432 42.857 0.00 0.00 34.97 2.83
114 115 1.038280 ACTGAGGACGAAACTTCCGT 58.962 50.000 0.00 0.00 43.56 4.69
115 116 1.419374 CACTGAGGACGAAACTTCCG 58.581 55.000 0.00 0.00 38.29 4.30
116 117 1.149148 GCACTGAGGACGAAACTTCC 58.851 55.000 0.00 0.00 0.00 3.46
117 118 1.795286 CTGCACTGAGGACGAAACTTC 59.205 52.381 0.00 0.00 0.00 3.01
118 119 1.541233 CCTGCACTGAGGACGAAACTT 60.541 52.381 0.00 0.00 34.69 2.66
119 120 0.034059 CCTGCACTGAGGACGAAACT 59.966 55.000 0.00 0.00 34.69 2.66
120 121 0.033504 TCCTGCACTGAGGACGAAAC 59.966 55.000 0.00 0.00 37.20 2.78
121 122 2.436521 TCCTGCACTGAGGACGAAA 58.563 52.632 0.00 0.00 37.20 3.46
122 123 4.191243 TCCTGCACTGAGGACGAA 57.809 55.556 0.00 0.00 37.20 3.85
126 127 4.056125 CGCGTCCTGCACTGAGGA 62.056 66.667 0.00 0.00 46.97 3.71
127 128 2.874010 CTACGCGTCCTGCACTGAGG 62.874 65.000 18.63 0.00 46.97 3.86
128 129 1.515088 CTACGCGTCCTGCACTGAG 60.515 63.158 18.63 0.00 46.97 3.35
129 130 2.566529 CTACGCGTCCTGCACTGA 59.433 61.111 18.63 0.00 46.97 3.41
130 131 2.507102 CCTACGCGTCCTGCACTG 60.507 66.667 18.63 0.00 46.97 3.66
131 132 2.989824 ACCTACGCGTCCTGCACT 60.990 61.111 18.63 0.00 46.97 4.40
132 133 2.809601 CACCTACGCGTCCTGCAC 60.810 66.667 18.63 0.00 46.97 4.57
133 134 4.735132 GCACCTACGCGTCCTGCA 62.735 66.667 18.63 0.00 46.97 4.41
134 135 4.735132 TGCACCTACGCGTCCTGC 62.735 66.667 18.63 21.01 41.47 4.85
135 136 2.048597 TTGCACCTACGCGTCCTG 60.049 61.111 18.63 10.88 33.35 3.86
136 137 1.812686 TTCTTGCACCTACGCGTCCT 61.813 55.000 18.63 0.00 33.35 3.85
137 138 1.352156 CTTCTTGCACCTACGCGTCC 61.352 60.000 18.63 0.41 33.35 4.79
138 139 1.352156 CCTTCTTGCACCTACGCGTC 61.352 60.000 18.63 0.07 33.35 5.19
139 140 1.374252 CCTTCTTGCACCTACGCGT 60.374 57.895 19.17 19.17 33.35 6.01
140 141 2.100631 CCCTTCTTGCACCTACGCG 61.101 63.158 3.53 3.53 33.35 6.01
141 142 0.321298 TTCCCTTCTTGCACCTACGC 60.321 55.000 0.00 0.00 0.00 4.42
142 143 1.275291 TCTTCCCTTCTTGCACCTACG 59.725 52.381 0.00 0.00 0.00 3.51
143 144 3.418684 TTCTTCCCTTCTTGCACCTAC 57.581 47.619 0.00 0.00 0.00 3.18
144 145 4.657814 ATTTCTTCCCTTCTTGCACCTA 57.342 40.909 0.00 0.00 0.00 3.08
145 146 3.532641 ATTTCTTCCCTTCTTGCACCT 57.467 42.857 0.00 0.00 0.00 4.00
146 147 3.829026 AGAATTTCTTCCCTTCTTGCACC 59.171 43.478 0.00 0.00 31.27 5.01
147 148 5.459536 AAGAATTTCTTCCCTTCTTGCAC 57.540 39.130 5.82 0.00 37.72 4.57
148 149 5.712152 GAAGAATTTCTTCCCTTCTTGCA 57.288 39.130 23.06 0.00 45.34 4.08
159 160 3.139077 ACCGCTTCGTGAAGAATTTCTT 58.861 40.909 11.40 11.40 40.79 2.52
160 161 2.767505 ACCGCTTCGTGAAGAATTTCT 58.232 42.857 13.60 0.00 40.79 2.52
161 162 3.059188 TGAACCGCTTCGTGAAGAATTTC 60.059 43.478 13.60 10.83 40.79 2.17
162 163 2.875933 TGAACCGCTTCGTGAAGAATTT 59.124 40.909 13.60 2.37 40.79 1.82
163 164 2.223377 GTGAACCGCTTCGTGAAGAATT 59.777 45.455 13.60 3.88 40.79 2.17
164 165 1.798813 GTGAACCGCTTCGTGAAGAAT 59.201 47.619 13.60 0.00 40.79 2.40
165 166 1.214367 GTGAACCGCTTCGTGAAGAA 58.786 50.000 13.60 0.00 40.79 2.52
166 167 0.599204 GGTGAACCGCTTCGTGAAGA 60.599 55.000 13.60 0.00 40.79 2.87
167 168 0.600255 AGGTGAACCGCTTCGTGAAG 60.600 55.000 5.24 5.24 42.08 3.02
168 169 0.878523 CAGGTGAACCGCTTCGTGAA 60.879 55.000 0.00 0.00 42.08 3.18
169 170 1.300620 CAGGTGAACCGCTTCGTGA 60.301 57.895 0.00 0.00 42.08 4.35
170 171 2.317609 CCAGGTGAACCGCTTCGTG 61.318 63.158 0.00 0.00 42.08 4.35
171 172 2.030562 CCAGGTGAACCGCTTCGT 59.969 61.111 0.00 0.00 42.08 3.85
172 173 2.742372 CCCAGGTGAACCGCTTCG 60.742 66.667 0.00 0.00 42.08 3.79
173 174 2.430367 ACCCAGGTGAACCGCTTC 59.570 61.111 0.00 0.00 42.08 3.86
189 190 1.079503 GTTTCTGATCGTCTGGGCAC 58.920 55.000 0.00 0.00 0.00 5.01
190 191 0.036388 GGTTTCTGATCGTCTGGGCA 60.036 55.000 0.00 0.00 0.00 5.36
191 192 0.036388 TGGTTTCTGATCGTCTGGGC 60.036 55.000 0.00 0.00 0.00 5.36
192 193 2.028112 TCTTGGTTTCTGATCGTCTGGG 60.028 50.000 0.00 0.00 0.00 4.45
193 194 3.056536 TCTCTTGGTTTCTGATCGTCTGG 60.057 47.826 0.00 0.00 0.00 3.86
194 195 3.923461 GTCTCTTGGTTTCTGATCGTCTG 59.077 47.826 0.00 0.00 0.00 3.51
195 196 3.574396 TGTCTCTTGGTTTCTGATCGTCT 59.426 43.478 0.00 0.00 0.00 4.18
196 197 3.675698 GTGTCTCTTGGTTTCTGATCGTC 59.324 47.826 0.00 0.00 0.00 4.20
197 198 3.069586 TGTGTCTCTTGGTTTCTGATCGT 59.930 43.478 0.00 0.00 0.00 3.73
198 199 3.653344 TGTGTCTCTTGGTTTCTGATCG 58.347 45.455 0.00 0.00 0.00 3.69
199 200 6.634805 TCTATGTGTCTCTTGGTTTCTGATC 58.365 40.000 0.00 0.00 0.00 2.92
200 201 6.611613 TCTATGTGTCTCTTGGTTTCTGAT 57.388 37.500 0.00 0.00 0.00 2.90
201 202 6.351371 GGATCTATGTGTCTCTTGGTTTCTGA 60.351 42.308 0.00 0.00 0.00 3.27
202 203 5.814705 GGATCTATGTGTCTCTTGGTTTCTG 59.185 44.000 0.00 0.00 0.00 3.02
203 204 5.723887 AGGATCTATGTGTCTCTTGGTTTCT 59.276 40.000 0.00 0.00 0.00 2.52
204 205 5.814705 CAGGATCTATGTGTCTCTTGGTTTC 59.185 44.000 0.00 0.00 0.00 2.78
205 206 5.485353 TCAGGATCTATGTGTCTCTTGGTTT 59.515 40.000 0.00 0.00 0.00 3.27
206 207 5.026121 TCAGGATCTATGTGTCTCTTGGTT 58.974 41.667 0.00 0.00 0.00 3.67
207 208 4.614475 TCAGGATCTATGTGTCTCTTGGT 58.386 43.478 0.00 0.00 0.00 3.67
208 209 5.564455 CGATCAGGATCTATGTGTCTCTTGG 60.564 48.000 7.61 0.00 35.72 3.61
209 210 5.009510 ACGATCAGGATCTATGTGTCTCTTG 59.990 44.000 7.61 0.00 35.72 3.02
210 211 5.136828 ACGATCAGGATCTATGTGTCTCTT 58.863 41.667 7.61 0.00 35.72 2.85
211 212 4.724399 ACGATCAGGATCTATGTGTCTCT 58.276 43.478 7.61 0.00 35.72 3.10
212 213 5.446143 AACGATCAGGATCTATGTGTCTC 57.554 43.478 7.61 0.00 35.72 3.36
213 214 7.338196 CCTATAACGATCAGGATCTATGTGTCT 59.662 40.741 7.61 0.00 35.72 3.41
214 215 7.415765 CCCTATAACGATCAGGATCTATGTGTC 60.416 44.444 7.61 0.00 35.72 3.67
215 216 6.378564 CCCTATAACGATCAGGATCTATGTGT 59.621 42.308 7.61 0.00 35.72 3.72
216 217 6.603599 TCCCTATAACGATCAGGATCTATGTG 59.396 42.308 7.61 0.00 35.72 3.21
217 218 6.732487 TCCCTATAACGATCAGGATCTATGT 58.268 40.000 7.61 0.00 35.72 2.29
218 219 6.264292 CCTCCCTATAACGATCAGGATCTATG 59.736 46.154 7.61 0.00 35.72 2.23
219 220 6.068735 ACCTCCCTATAACGATCAGGATCTAT 60.069 42.308 7.61 2.89 35.72 1.98
220 221 5.253330 ACCTCCCTATAACGATCAGGATCTA 59.747 44.000 7.61 0.00 35.72 1.98
221 222 4.044825 ACCTCCCTATAACGATCAGGATCT 59.955 45.833 7.61 0.00 35.72 2.75
222 223 4.158764 CACCTCCCTATAACGATCAGGATC 59.841 50.000 0.00 0.00 34.56 3.36
223 224 4.090090 CACCTCCCTATAACGATCAGGAT 58.910 47.826 0.00 0.00 0.00 3.24
224 225 3.497332 CACCTCCCTATAACGATCAGGA 58.503 50.000 0.00 0.00 0.00 3.86
225 226 2.028930 GCACCTCCCTATAACGATCAGG 60.029 54.545 0.00 0.00 0.00 3.86
226 227 2.351835 CGCACCTCCCTATAACGATCAG 60.352 54.545 0.00 0.00 0.00 2.90
227 228 1.611977 CGCACCTCCCTATAACGATCA 59.388 52.381 0.00 0.00 0.00 2.92
228 229 1.612463 ACGCACCTCCCTATAACGATC 59.388 52.381 0.00 0.00 0.00 3.69
229 230 1.700955 ACGCACCTCCCTATAACGAT 58.299 50.000 0.00 0.00 0.00 3.73
230 231 2.158769 TCTACGCACCTCCCTATAACGA 60.159 50.000 0.00 0.00 0.00 3.85
231 232 2.224606 TCTACGCACCTCCCTATAACG 58.775 52.381 0.00 0.00 0.00 3.18
232 233 3.635836 AGTTCTACGCACCTCCCTATAAC 59.364 47.826 0.00 0.00 0.00 1.89
233 234 3.887716 GAGTTCTACGCACCTCCCTATAA 59.112 47.826 0.00 0.00 0.00 0.98
234 235 3.117776 TGAGTTCTACGCACCTCCCTATA 60.118 47.826 0.00 0.00 0.00 1.31
235 236 2.308690 GAGTTCTACGCACCTCCCTAT 58.691 52.381 0.00 0.00 0.00 2.57
236 237 1.005097 TGAGTTCTACGCACCTCCCTA 59.995 52.381 0.00 0.00 0.00 3.53
237 238 0.251653 TGAGTTCTACGCACCTCCCT 60.252 55.000 0.00 0.00 0.00 4.20
238 239 0.606604 TTGAGTTCTACGCACCTCCC 59.393 55.000 0.00 0.00 0.00 4.30
239 240 1.544691 TCTTGAGTTCTACGCACCTCC 59.455 52.381 0.00 0.00 0.00 4.30
240 241 2.030185 TGTCTTGAGTTCTACGCACCTC 60.030 50.000 0.00 0.00 0.00 3.85
241 242 1.961394 TGTCTTGAGTTCTACGCACCT 59.039 47.619 0.00 0.00 0.00 4.00
242 243 2.433868 TGTCTTGAGTTCTACGCACC 57.566 50.000 0.00 0.00 0.00 5.01
243 244 4.789095 TTTTGTCTTGAGTTCTACGCAC 57.211 40.909 0.00 0.00 0.00 5.34
244 245 6.220930 AGTATTTTGTCTTGAGTTCTACGCA 58.779 36.000 0.00 0.00 0.00 5.24
245 246 6.707599 AGTATTTTGTCTTGAGTTCTACGC 57.292 37.500 0.00 0.00 0.00 4.42
246 247 8.967552 AGTAGTATTTTGTCTTGAGTTCTACG 57.032 34.615 0.00 0.00 32.30 3.51
247 248 9.356433 GGAGTAGTATTTTGTCTTGAGTTCTAC 57.644 37.037 0.00 0.00 0.00 2.59
248 249 8.529476 GGGAGTAGTATTTTGTCTTGAGTTCTA 58.471 37.037 0.00 0.00 0.00 2.10
249 250 7.235812 AGGGAGTAGTATTTTGTCTTGAGTTCT 59.764 37.037 0.00 0.00 0.00 3.01
250 251 7.387643 AGGGAGTAGTATTTTGTCTTGAGTTC 58.612 38.462 0.00 0.00 0.00 3.01
251 252 7.317722 AGGGAGTAGTATTTTGTCTTGAGTT 57.682 36.000 0.00 0.00 0.00 3.01
252 253 6.070710 GGAGGGAGTAGTATTTTGTCTTGAGT 60.071 42.308 0.00 0.00 0.00 3.41
253 254 6.342111 GGAGGGAGTAGTATTTTGTCTTGAG 58.658 44.000 0.00 0.00 0.00 3.02
254 255 5.105473 CGGAGGGAGTAGTATTTTGTCTTGA 60.105 44.000 0.00 0.00 0.00 3.02
255 256 5.109903 CGGAGGGAGTAGTATTTTGTCTTG 58.890 45.833 0.00 0.00 0.00 3.02
256 257 4.776308 ACGGAGGGAGTAGTATTTTGTCTT 59.224 41.667 0.00 0.00 0.00 3.01
257 258 4.351127 ACGGAGGGAGTAGTATTTTGTCT 58.649 43.478 0.00 0.00 0.00 3.41
258 259 4.732672 ACGGAGGGAGTAGTATTTTGTC 57.267 45.455 0.00 0.00 0.00 3.18
259 260 4.081254 GGAACGGAGGGAGTAGTATTTTGT 60.081 45.833 0.00 0.00 0.00 2.83
260 261 4.081309 TGGAACGGAGGGAGTAGTATTTTG 60.081 45.833 0.00 0.00 0.00 2.44
261 262 4.098894 TGGAACGGAGGGAGTAGTATTTT 58.901 43.478 0.00 0.00 0.00 1.82
262 263 3.716431 TGGAACGGAGGGAGTAGTATTT 58.284 45.455 0.00 0.00 0.00 1.40
263 264 3.393426 TGGAACGGAGGGAGTAGTATT 57.607 47.619 0.00 0.00 0.00 1.89
264 265 3.614568 ATGGAACGGAGGGAGTAGTAT 57.385 47.619 0.00 0.00 0.00 2.12
265 266 4.524802 TTATGGAACGGAGGGAGTAGTA 57.475 45.455 0.00 0.00 0.00 1.82
266 267 3.393426 TTATGGAACGGAGGGAGTAGT 57.607 47.619 0.00 0.00 0.00 2.73
267 268 7.614583 TCTTATATTATGGAACGGAGGGAGTAG 59.385 40.741 0.00 0.00 0.00 2.57
268 269 7.472741 TCTTATATTATGGAACGGAGGGAGTA 58.527 38.462 0.00 0.00 0.00 2.59
269 270 6.320518 TCTTATATTATGGAACGGAGGGAGT 58.679 40.000 0.00 0.00 0.00 3.85
270 271 6.852420 TCTTATATTATGGAACGGAGGGAG 57.148 41.667 0.00 0.00 0.00 4.30
271 272 7.236847 ACATTCTTATATTATGGAACGGAGGGA 59.763 37.037 0.00 0.00 0.00 4.20
272 273 7.394816 ACATTCTTATATTATGGAACGGAGGG 58.605 38.462 0.00 0.00 0.00 4.30
273 274 8.848474 AACATTCTTATATTATGGAACGGAGG 57.152 34.615 0.00 0.00 0.00 4.30
319 320 9.435688 GGCTGTCCAAGAATATAAAAACATTTT 57.564 29.630 0.00 0.00 0.00 1.82
320 321 8.815912 AGGCTGTCCAAGAATATAAAAACATTT 58.184 29.630 0.00 0.00 33.74 2.32
321 322 8.253113 CAGGCTGTCCAAGAATATAAAAACATT 58.747 33.333 6.28 0.00 33.74 2.71
322 323 7.615365 TCAGGCTGTCCAAGAATATAAAAACAT 59.385 33.333 15.27 0.00 33.74 2.71
323 324 6.945435 TCAGGCTGTCCAAGAATATAAAAACA 59.055 34.615 15.27 0.00 33.74 2.83
324 325 7.391148 TCAGGCTGTCCAAGAATATAAAAAC 57.609 36.000 15.27 0.00 33.74 2.43
325 326 8.415950 TTTCAGGCTGTCCAAGAATATAAAAA 57.584 30.769 15.27 0.00 31.64 1.94
326 327 8.415950 TTTTCAGGCTGTCCAAGAATATAAAA 57.584 30.769 15.27 6.34 31.64 1.52
327 328 8.303876 GTTTTTCAGGCTGTCCAAGAATATAAA 58.696 33.333 15.27 0.00 31.64 1.40
328 329 7.361713 CGTTTTTCAGGCTGTCCAAGAATATAA 60.362 37.037 15.27 0.00 31.64 0.98
329 330 6.093495 CGTTTTTCAGGCTGTCCAAGAATATA 59.907 38.462 15.27 0.00 31.64 0.86
330 331 5.106157 CGTTTTTCAGGCTGTCCAAGAATAT 60.106 40.000 15.27 0.00 31.64 1.28
331 332 4.215399 CGTTTTTCAGGCTGTCCAAGAATA 59.785 41.667 15.27 0.00 31.64 1.75
332 333 3.004734 CGTTTTTCAGGCTGTCCAAGAAT 59.995 43.478 15.27 0.00 31.64 2.40
333 334 2.357637 CGTTTTTCAGGCTGTCCAAGAA 59.642 45.455 15.27 0.34 33.74 2.52
334 335 1.946768 CGTTTTTCAGGCTGTCCAAGA 59.053 47.619 15.27 0.00 33.74 3.02
335 336 1.676006 ACGTTTTTCAGGCTGTCCAAG 59.324 47.619 15.27 5.82 33.74 3.61
336 337 1.757682 ACGTTTTTCAGGCTGTCCAA 58.242 45.000 15.27 3.48 33.74 3.53
337 338 1.757682 AACGTTTTTCAGGCTGTCCA 58.242 45.000 15.27 0.00 33.74 4.02
338 339 2.863401 AAACGTTTTTCAGGCTGTCC 57.137 45.000 15.27 0.00 0.00 4.02
339 340 8.515473 AATATAAAAACGTTTTTCAGGCTGTC 57.485 30.769 35.13 0.96 40.53 3.51
342 343 9.581099 CCATAATATAAAAACGTTTTTCAGGCT 57.419 29.630 35.13 21.40 40.53 4.58
343 344 8.813282 CCCATAATATAAAAACGTTTTTCAGGC 58.187 33.333 35.13 0.00 40.53 4.85
348 349 9.863845 CCTGTCCCATAATATAAAAACGTTTTT 57.136 29.630 33.94 33.94 42.51 1.94
349 350 8.471609 CCCTGTCCCATAATATAAAAACGTTTT 58.528 33.333 20.26 20.26 0.00 2.43
350 351 7.068962 CCCCTGTCCCATAATATAAAAACGTTT 59.931 37.037 7.96 7.96 0.00 3.60
351 352 6.548251 CCCCTGTCCCATAATATAAAAACGTT 59.452 38.462 0.00 0.00 0.00 3.99
352 353 6.066032 CCCCTGTCCCATAATATAAAAACGT 58.934 40.000 0.00 0.00 0.00 3.99
353 354 6.300703 TCCCCTGTCCCATAATATAAAAACG 58.699 40.000 0.00 0.00 0.00 3.60
354 355 7.783119 ACTTCCCCTGTCCCATAATATAAAAAC 59.217 37.037 0.00 0.00 0.00 2.43
355 356 7.889178 ACTTCCCCTGTCCCATAATATAAAAA 58.111 34.615 0.00 0.00 0.00 1.94
356 357 7.474474 ACTTCCCCTGTCCCATAATATAAAA 57.526 36.000 0.00 0.00 0.00 1.52
357 358 8.611257 CATACTTCCCCTGTCCCATAATATAAA 58.389 37.037 0.00 0.00 0.00 1.40
358 359 7.311675 GCATACTTCCCCTGTCCCATAATATAA 60.312 40.741 0.00 0.00 0.00 0.98
359 360 6.157994 GCATACTTCCCCTGTCCCATAATATA 59.842 42.308 0.00 0.00 0.00 0.86
360 361 5.044846 GCATACTTCCCCTGTCCCATAATAT 60.045 44.000 0.00 0.00 0.00 1.28
361 362 4.288626 GCATACTTCCCCTGTCCCATAATA 59.711 45.833 0.00 0.00 0.00 0.98
362 363 3.074538 GCATACTTCCCCTGTCCCATAAT 59.925 47.826 0.00 0.00 0.00 1.28
363 364 2.441750 GCATACTTCCCCTGTCCCATAA 59.558 50.000 0.00 0.00 0.00 1.90
364 365 2.054799 GCATACTTCCCCTGTCCCATA 58.945 52.381 0.00 0.00 0.00 2.74
365 366 0.846693 GCATACTTCCCCTGTCCCAT 59.153 55.000 0.00 0.00 0.00 4.00
366 367 1.279025 GGCATACTTCCCCTGTCCCA 61.279 60.000 0.00 0.00 0.00 4.37
367 368 1.279025 TGGCATACTTCCCCTGTCCC 61.279 60.000 0.00 0.00 0.00 4.46
368 369 0.846693 ATGGCATACTTCCCCTGTCC 59.153 55.000 0.00 0.00 0.00 4.02
369 370 3.307762 GGATATGGCATACTTCCCCTGTC 60.308 52.174 9.83 0.00 0.00 3.51
370 371 2.644798 GGATATGGCATACTTCCCCTGT 59.355 50.000 9.83 0.00 0.00 4.00
371 372 2.915604 AGGATATGGCATACTTCCCCTG 59.084 50.000 19.05 0.00 0.00 4.45
372 373 3.297994 AGGATATGGCATACTTCCCCT 57.702 47.619 19.05 13.19 0.00 4.79
373 374 6.824958 TTATAGGATATGGCATACTTCCCC 57.175 41.667 19.05 11.57 0.00 4.81
374 375 8.034313 TCATTATAGGATATGGCATACTTCCC 57.966 38.462 19.05 13.53 0.00 3.97
375 376 9.717942 GATCATTATAGGATATGGCATACTTCC 57.282 37.037 16.19 16.19 0.00 3.46
376 377 9.416794 CGATCATTATAGGATATGGCATACTTC 57.583 37.037 9.83 4.43 0.00 3.01
377 378 9.147732 TCGATCATTATAGGATATGGCATACTT 57.852 33.333 9.83 3.47 0.00 2.24
378 379 8.712228 TCGATCATTATAGGATATGGCATACT 57.288 34.615 9.83 6.12 0.00 2.12
379 380 9.935241 ATTCGATCATTATAGGATATGGCATAC 57.065 33.333 9.83 4.10 0.00 2.39
380 381 9.933723 CATTCGATCATTATAGGATATGGCATA 57.066 33.333 10.07 10.07 0.00 3.14
381 382 8.654094 TCATTCGATCATTATAGGATATGGCAT 58.346 33.333 4.88 4.88 0.00 4.40
382 383 8.021898 TCATTCGATCATTATAGGATATGGCA 57.978 34.615 0.00 0.00 0.00 4.92
383 384 8.893219 TTCATTCGATCATTATAGGATATGGC 57.107 34.615 0.00 0.00 0.00 4.40
1483 1495 2.160615 CCAACGTGTCAATCGCCAAATA 59.839 45.455 0.00 0.00 0.00 1.40
1696 1708 6.723977 TCAATTTTAGCTAGTTGGTGGGAAAT 59.276 34.615 12.68 3.22 0.00 2.17
1704 1716 8.293699 AGGGTTAATCAATTTTAGCTAGTTGG 57.706 34.615 12.68 0.00 0.00 3.77
1903 1917 8.122472 TCCCTCTCTTTCCATTTTTGTTAATC 57.878 34.615 0.00 0.00 0.00 1.75
1909 1923 5.415701 TCGAATCCCTCTCTTTCCATTTTTG 59.584 40.000 0.00 0.00 0.00 2.44
1915 1929 2.236395 GGTTCGAATCCCTCTCTTTCCA 59.764 50.000 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.