AutoCloner

Multiple sequence alignment - TraesCS7A01G030000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G030000	chr7A	100.000	2657	0	0	1	2657	12180529	12183185	0.000000e+00	4907.0
1	TraesCS7A01G030000	chr7A	96.583	878	25	4	1781	2655	679011818	679010943	0.000000e+00	1450.0
2	TraesCS7A01G030000	chr7A	90.558	699	53	11	1775	2468	696653211	696652521	0.000000e+00	913.0
3	TraesCS7A01G030000	chr7A	96.175	183	5	2	1806	1987	40368612	40368431	5.560000e-77	298.0
4	TraesCS7A01G030000	chr7A	96.875	32	1	0	220	251	659654643	659654674	1.000000e-03	54.7
5	TraesCS7A01G030000	chr4A	87.479	1781	159	28	1	1773	725589807	725588083	0.000000e+00	1995.0
6	TraesCS7A01G030000	chr4A	83.213	1382	167	32	285	1653	725659853	725658524	0.000000e+00	1206.0
7	TraesCS7A01G030000	chr4A	91.440	771	57	8	1772	2539	706262696	706261932	0.000000e+00	1050.0
8	TraesCS7A01G030000	chr4A	90.323	124	8	4	60	182	725659993	725659873	2.740000e-35	159.0
9	TraesCS7A01G030000	chr5A	96.731	887	27	2	1772	2657	546416155	546415270	0.000000e+00	1476.0
10	TraesCS7A01G030000	chr5A	83.333	846	125	11	805	1646	537109590	537110423	0.000000e+00	767.0
11	TraesCS7A01G030000	chr2A	96.610	885	28	2	1774	2657	98127480	98128363	0.000000e+00	1467.0
12	TraesCS7A01G030000	chr6A	94.131	886	31	4	1774	2657	24835282	24834416	0.000000e+00	1328.0
13	TraesCS7A01G030000	chr6A	93.012	601	24	2	1771	2371	50268547	50267965	0.000000e+00	861.0
14	TraesCS7A01G030000	chr4D	93.409	880	47	10	1782	2657	58150006	58150878	0.000000e+00	1293.0
15	TraesCS7A01G030000	chr3D	92.881	885	50	13	1778	2657	103774675	103775551	0.000000e+00	1273.0
16	TraesCS7A01G030000	chr3D	89.091	55	4	2	220	273	579138746	579138799	1.710000e-07	67.6
17	TraesCS7A01G030000	chr2B	90.530	887	65	17	1775	2657	95790835	95789964	0.000000e+00	1155.0
18	TraesCS7A01G030000	chr1A	90.255	862	60	18	1801	2657	583135182	583136024	0.000000e+00	1105.0
19	TraesCS7A01G030000	chr7D	88.889	837	71	12	1	833	12470914	12471732	0.000000e+00	1011.0
20	TraesCS7A01G030000	chr7D	93.202	662	40	5	1996	2655	9416334	9415676	0.000000e+00	968.0
21	TraesCS7A01G030000	chr7D	79.571	886	133	26	869	1750	12475849	12476690	8.190000e-165	590.0
22	TraesCS7A01G030000	chr5D	95.135	185	4	4	1771	1951	41363280	41363097	1.200000e-73	287.0
23	TraesCS7A01G030000	chr5D	85.484	62	7	2	209	270	408780891	408780832	2.210000e-06	63.9
24	TraesCS7A01G030000	chr5D	94.444	36	2	0	220	255	408779706	408779671	3.690000e-04	56.5
25	TraesCS7A01G030000	chr1B	85.567	97	13	1	513	609	617284048	617284143	1.680000e-17	100.0
26	TraesCS7A01G030000	chrUn	94.444	36	2	0	220	255	245963213	245963248	3.690000e-04	56.5
27	TraesCS7A01G030000	chr6D	96.875	32	1	0	224	255	233159431	233159400	1.000000e-03	54.7
28	TraesCS7A01G030000	chr6D	88.636	44	5	0	224	267	260641794	260641751	1.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G030000	chr7A	12180529	12183185	2656	False	4907.0	4907	100.000	1	2657	1	chr7A.!!$F1	2656
1	TraesCS7A01G030000	chr7A	679010943	679011818	875	True	1450.0	1450	96.583	1781	2655	1	chr7A.!!$R2	874
2	TraesCS7A01G030000	chr7A	696652521	696653211	690	True	913.0	913	90.558	1775	2468	1	chr7A.!!$R3	693
3	TraesCS7A01G030000	chr4A	725588083	725589807	1724	True	1995.0	1995	87.479	1	1773	1	chr4A.!!$R2	1772
4	TraesCS7A01G030000	chr4A	706261932	706262696	764	True	1050.0	1050	91.440	1772	2539	1	chr4A.!!$R1	767
5	TraesCS7A01G030000	chr4A	725658524	725659993	1469	True	682.5	1206	86.768	60	1653	2	chr4A.!!$R3	1593
6	TraesCS7A01G030000	chr5A	546415270	546416155	885	True	1476.0	1476	96.731	1772	2657	1	chr5A.!!$R1	885
7	TraesCS7A01G030000	chr5A	537109590	537110423	833	False	767.0	767	83.333	805	1646	1	chr5A.!!$F1	841
8	TraesCS7A01G030000	chr2A	98127480	98128363	883	False	1467.0	1467	96.610	1774	2657	1	chr2A.!!$F1	883
9	TraesCS7A01G030000	chr6A	24834416	24835282	866	True	1328.0	1328	94.131	1774	2657	1	chr6A.!!$R1	883
10	TraesCS7A01G030000	chr6A	50267965	50268547	582	True	861.0	861	93.012	1771	2371	1	chr6A.!!$R2	600
11	TraesCS7A01G030000	chr4D	58150006	58150878	872	False	1293.0	1293	93.409	1782	2657	1	chr4D.!!$F1	875
12	TraesCS7A01G030000	chr3D	103774675	103775551	876	False	1273.0	1273	92.881	1778	2657	1	chr3D.!!$F1	879
13	TraesCS7A01G030000	chr2B	95789964	95790835	871	True	1155.0	1155	90.530	1775	2657	1	chr2B.!!$R1	882
14	TraesCS7A01G030000	chr1A	583135182	583136024	842	False	1105.0	1105	90.255	1801	2657	1	chr1A.!!$F1	856
15	TraesCS7A01G030000	chr7D	12470914	12471732	818	False	1011.0	1011	88.889	1	833	1	chr7D.!!$F1	832
16	TraesCS7A01G030000	chr7D	9415676	9416334	658	True	968.0	968	93.202	1996	2655	1	chr7D.!!$R1	659
17	TraesCS7A01G030000	chr7D	12475849	12476690	841	False	590.0	590	79.571	869	1750	1	chr7D.!!$F2	881

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
858	874	0.03582	GCATTCACGAACCCCCACTA	60.036	55.0	0.0	0.0	0.0	2.74	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1796	1852	0.10412	GTAATGAAAATGGGGGCCGC	59.896	55.0	14.65	14.65	0.0	6.53	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
26	27	5.476254	TGTGAAATCCATGCAGTACATTTCA	59.524	36.000	16.21	16.21	39.83	2.69
31	32	2.947652	CCATGCAGTACATTTCAGGAGG	59.052	50.000	0.00	0.00	36.64	4.30
37	38	3.055530	CAGTACATTTCAGGAGGCAGACT	60.056	47.826	0.00	0.00	0.00	3.24
72	73	1.545841	GGATTTTGGAGTCGGGCTTT	58.454	50.000	0.00	0.00	0.00	3.51
153	154	4.399618	TGTTTTTCCCATGAAACGAGAACA	59.600	37.500	0.00	0.00	40.12	3.18
208	209	7.865707	ACAACAGTGTGTCTAAATCAATCTTC	58.134	34.615	0.00	0.00	36.31	2.87
209	210	7.498900	ACAACAGTGTGTCTAAATCAATCTTCA	59.501	33.333	0.00	0.00	36.31	3.02
210	211	8.344831	CAACAGTGTGTCTAAATCAATCTTCAA	58.655	33.333	0.00	0.00	0.00	2.69
211	212	8.627208	ACAGTGTGTCTAAATCAATCTTCAAT	57.373	30.769	0.00	0.00	0.00	2.57
212	213	8.725148	ACAGTGTGTCTAAATCAATCTTCAATC	58.275	33.333	0.00	0.00	0.00	2.67
213	214	8.944029	CAGTGTGTCTAAATCAATCTTCAATCT	58.056	33.333	0.00	0.00	0.00	2.40
214	215	9.512588	AGTGTGTCTAAATCAATCTTCAATCTT	57.487	29.630	0.00	0.00	0.00	2.40
250	251	6.604735	AGATACATCCATTTAAGCGACAAC	57.395	37.500	0.00	0.00	0.00	3.32
251	252	5.527582	AGATACATCCATTTAAGCGACAACC	59.472	40.000	0.00	0.00	0.00	3.77
257	258	4.082463	TCCATTTAAGCGACAACCAATTCC	60.082	41.667	0.00	0.00	0.00	3.01
258	259	4.321601	CCATTTAAGCGACAACCAATTCCA	60.322	41.667	0.00	0.00	0.00	3.53
277	282	3.194968	TCCAGACGGAGGAAGTACAAATC	59.805	47.826	0.00	0.00	35.91	2.17
281	286	5.643777	CAGACGGAGGAAGTACAAATCAAAT	59.356	40.000	0.00	0.00	0.00	2.32
283	288	5.556915	ACGGAGGAAGTACAAATCAAATGA	58.443	37.500	0.00	0.00	0.00	2.57
302	307	8.034215	TCAAATGACAAACAAACACTGAAGAAT	58.966	29.630	0.00	0.00	0.00	2.40
303	308	7.760131	AATGACAAACAAACACTGAAGAATG	57.240	32.000	0.00	0.00	0.00	2.67
333	338	7.360361	ACAATGTTTCTCAACCGATCTTAAAC	58.640	34.615	0.00	0.00	31.02	2.01
339	344	7.519032	TTCTCAACCGATCTTAAACCAAAAT	57.481	32.000	0.00	0.00	0.00	1.82
346	351	5.469479	CGATCTTAAACCAAAATGGCAACT	58.531	37.500	0.00	0.00	42.67	3.16
365	370	4.613925	ACTTCTTGCAGTTGAGATCTGA	57.386	40.909	0.00	0.00	35.20	3.27
434	443	6.923508	TGACGCATTGATTAGTATCTTAGGTG	59.076	38.462	0.00	0.00	0.00	4.00
439	448	7.715249	GCATTGATTAGTATCTTAGGTGTCCAA	59.285	37.037	0.00	0.00	0.00	3.53
478	487	8.806429	TGCTTCAATAAATCTATGGAAGTTCA	57.194	30.769	5.01	0.00	43.50	3.18
479	488	8.896744	TGCTTCAATAAATCTATGGAAGTTCAG	58.103	33.333	5.01	0.00	43.50	3.02
503	512	9.561270	CAGTCTGTATTAATACATGGAGATACG	57.439	37.037	24.81	12.37	41.92	3.06
504	513	8.244802	AGTCTGTATTAATACATGGAGATACGC	58.755	37.037	24.81	9.61	41.92	4.42
505	514	7.488471	GTCTGTATTAATACATGGAGATACGCC	59.512	40.741	24.81	6.58	41.92	5.68
506	515	7.177744	TCTGTATTAATACATGGAGATACGCCA	59.822	37.037	24.81	0.00	41.92	5.69
682	697	2.253603	CGCAAGCAAAAGCATAAGACC	58.746	47.619	0.00	0.00	0.00	3.85
850	866	3.684788	ACTGGATACTTGCATTCACGAAC	59.315	43.478	0.00	0.00	37.61	3.95
855	871	0.893270	CTTGCATTCACGAACCCCCA	60.893	55.000	0.00	0.00	0.00	4.96
856	872	1.175983	TTGCATTCACGAACCCCCAC	61.176	55.000	0.00	0.00	0.00	4.61
857	873	1.303317	GCATTCACGAACCCCCACT	60.303	57.895	0.00	0.00	0.00	4.00
858	874	0.035820	GCATTCACGAACCCCCACTA	60.036	55.000	0.00	0.00	0.00	2.74
859	875	1.408266	GCATTCACGAACCCCCACTAT	60.408	52.381	0.00	0.00	0.00	2.12
860	876	2.158871	GCATTCACGAACCCCCACTATA	60.159	50.000	0.00	0.00	0.00	1.31
866	912	2.326428	CGAACCCCCACTATACCTGAT	58.674	52.381	0.00	0.00	0.00	2.90
867	913	2.704065	CGAACCCCCACTATACCTGATT	59.296	50.000	0.00	0.00	0.00	2.57
928	974	2.236766	CCATCCATCCATTTCTGCCTC	58.763	52.381	0.00	0.00	0.00	4.70
949	998	2.094286	CAGGCATCGGTCTCTATCCATC	60.094	54.545	0.00	0.00	0.00	3.51
962	1011	2.512910	ATCCATCTATCCCCACCACA	57.487	50.000	0.00	0.00	0.00	4.17
1062	1111	5.405935	TCGTCATCATTCTTCTTTCCTCA	57.594	39.130	0.00	0.00	0.00	3.86
1068	1117	4.267536	TCATTCTTCTTTCCTCAGCCATG	58.732	43.478	0.00	0.00	0.00	3.66
1071	1120	0.323725	TTCTTTCCTCAGCCATGGCC	60.324	55.000	33.14	15.39	43.17	5.36
1162	1211	1.118965	TGCCTCGAACTGGTCCAAGA	61.119	55.000	0.00	0.00	0.00	3.02
1334	1383	1.128136	CGTCAAGAAGATGCTGCACAG	59.872	52.381	3.57	0.00	0.00	3.66
1376	1425	0.671781	ACAGCACGCCATCTCAGAAC	60.672	55.000	0.00	0.00	0.00	3.01
1563	1618	3.803715	GCGGGCTTGCTCTTCTTCATATA	60.804	47.826	0.00	0.00	0.00	0.86
1648	1703	3.134458	GCCTTGCTATCACCATACAGAC	58.866	50.000	0.00	0.00	0.00	3.51
1664	1719	4.199432	ACAGACTGGACTGATTCATGAC	57.801	45.455	7.51	0.00	40.63	3.06
1668	1723	3.276857	ACTGGACTGATTCATGACATGC	58.723	45.455	10.76	0.00	0.00	4.06
1711	1767	8.667987	AAACATACAGTATTAATGTTGCAACG	57.332	30.769	23.79	9.17	41.67	4.10
1724	1780	5.090652	TGTTGCAACGTCAATTCTACTTC	57.909	39.130	23.79	0.00	0.00	3.01
1796	1852	0.391130	TTTCGATCAGAAGGGCCACG	60.391	55.000	6.18	0.00	40.40	4.94
2088	2169	6.236409	AGCAAAAGAACAAGAGAGATCATCA	58.764	36.000	0.00	0.00	0.00	3.07
2152	2233	2.437002	CAGGCCCCCAACCGTAAA	59.563	61.111	0.00	0.00	0.00	2.01
2377	2460	5.047802	GCCGTACCAATAGCTATAACCACTA	60.048	44.000	6.68	0.00	0.00	2.74
2412	2495	7.419057	CCAGTATACTTAGGAAGCCAATTCTGA	60.419	40.741	1.56	0.00	38.07	3.27
2424	2507	5.976458	AGCCAATTCTGACAAAAGTCAAAA	58.024	33.333	0.00	0.00	32.43	2.44
2519	2602	6.241207	AGTGAAAAACAGATGGTCAATACG	57.759	37.500	0.00	0.00	0.00	3.06
2650	2733	8.297426	CCTTAATTTTCAAAGGTACCTTCAGTC	58.703	37.037	27.24	0.00	37.96	3.51

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
11	12	2.357009	GCCTCCTGAAATGTACTGCATG	59.643	50.000	0.00	0.00	37.96	4.06
13	14	1.350684	TGCCTCCTGAAATGTACTGCA	59.649	47.619	0.00	0.00	0.00	4.41
51	52	1.208165	AGCCCGACTCCAAAATCCCT	61.208	55.000	0.00	0.00	0.00	4.20
58	59	3.713826	ATAGAAAAAGCCCGACTCCAA	57.286	42.857	0.00	0.00	0.00	3.53
211	212	9.533831	TGGATGTATCTAGCATTGAGTATAAGA	57.466	33.333	0.00	0.00	0.00	2.10
221	222	7.118390	GTCGCTTAAATGGATGTATCTAGCATT	59.882	37.037	0.00	0.00	0.00	3.56
222	223	6.591834	GTCGCTTAAATGGATGTATCTAGCAT	59.408	38.462	0.00	0.00	0.00	3.79
224	225	5.926542	TGTCGCTTAAATGGATGTATCTAGC	59.073	40.000	0.00	0.00	0.00	3.42
235	236	4.173256	GGAATTGGTTGTCGCTTAAATGG	58.827	43.478	0.00	0.00	0.00	3.16
240	241	3.071479	GTCTGGAATTGGTTGTCGCTTA	58.929	45.455	0.00	0.00	0.00	3.09
241	242	1.880027	GTCTGGAATTGGTTGTCGCTT	59.120	47.619	0.00	0.00	0.00	4.68
250	251	1.279271	ACTTCCTCCGTCTGGAATTGG	59.721	52.381	0.00	0.00	45.87	3.16
251	252	2.770164	ACTTCCTCCGTCTGGAATTG	57.230	50.000	0.00	0.00	45.87	2.32
257	258	4.188247	TGATTTGTACTTCCTCCGTCTG	57.812	45.455	0.00	0.00	0.00	3.51
258	259	4.884668	TTGATTTGTACTTCCTCCGTCT	57.115	40.909	0.00	0.00	0.00	4.18
277	282	7.579589	TTCTTCAGTGTTTGTTTGTCATTTG	57.420	32.000	0.00	0.00	0.00	2.32
281	286	6.507958	TCATTCTTCAGTGTTTGTTTGTCA	57.492	33.333	0.00	0.00	0.00	3.58
283	288	6.686630	TGTTCATTCTTCAGTGTTTGTTTGT	58.313	32.000	0.00	0.00	0.00	2.83
302	307	4.396478	TCGGTTGAGAAACATTGTTGTTCA	59.604	37.500	2.13	7.37	45.30	3.18
303	308	4.915704	TCGGTTGAGAAACATTGTTGTTC	58.084	39.130	2.13	4.91	45.30	3.18
346	351	5.614308	TCTTTCAGATCTCAACTGCAAGAA	58.386	37.500	0.00	0.00	41.64	2.52
400	406	0.400213	TCAATGCGTCAGGGGAAACT	59.600	50.000	0.00	0.00	0.00	2.66
434	443	2.485814	GCAACACCTCTTCATCTTGGAC	59.514	50.000	0.00	0.00	0.00	4.02
439	448	3.777106	TGAAGCAACACCTCTTCATCT	57.223	42.857	1.03	0.00	42.43	2.90
478	487	8.244802	GCGTATCTCCATGTATTAATACAGACT	58.755	37.037	27.40	12.92	45.46	3.24
479	488	7.488471	GGCGTATCTCCATGTATTAATACAGAC	59.512	40.741	27.40	13.14	45.46	3.51
502	511	0.813184	AGGTGCTCATTTTCATGGCG	59.187	50.000	0.00	0.00	32.24	5.69
503	512	3.633525	TGATAGGTGCTCATTTTCATGGC	59.366	43.478	0.00	0.00	0.00	4.40
504	513	7.610692	AGATATGATAGGTGCTCATTTTCATGG	59.389	37.037	0.00	0.00	35.12	3.66
505	514	8.451748	CAGATATGATAGGTGCTCATTTTCATG	58.548	37.037	8.10	0.00	35.12	3.07
506	515	8.162085	ACAGATATGATAGGTGCTCATTTTCAT	58.838	33.333	0.00	4.67	35.12	2.57
615	628	7.792374	ATGCAGTATACAGTTTGAACATAGG	57.208	36.000	5.50	0.00	0.00	2.57
682	697	9.740239	ATAAGGATTTCGAAATGATCAATGTTG	57.260	29.630	27.27	0.00	0.00	3.33
729	744	8.941995	ATCTCCTGATATTAGTGCTAGTTGTA	57.058	34.615	0.00	0.00	0.00	2.41
740	756	6.873076	GCTCACTTTGGATCTCCTGATATTAG	59.127	42.308	0.00	0.00	36.82	1.73
850	866	5.843019	ATACAAATCAGGTATAGTGGGGG	57.157	43.478	0.00	0.00	29.96	5.40
884	930	6.600822	GGTTGGATGGATTGAGGTGATATATG	59.399	42.308	0.00	0.00	0.00	1.78
885	931	6.275381	TGGTTGGATGGATTGAGGTGATATAT	59.725	38.462	0.00	0.00	0.00	0.86
928	974	1.332195	TGGATAGAGACCGATGCCTG	58.668	55.000	0.00	0.00	0.00	4.85
949	998	1.915228	CTGGGTGTGGTGGGGATAG	59.085	63.158	0.00	0.00	0.00	2.08
962	1011	4.118584	GCCTTGAATTGGCTGGGT	57.881	55.556	0.00	0.00	46.38	4.51
1062	1111	4.172512	CTCTGAGCGGCCATGGCT	62.173	66.667	34.70	17.16	45.00	4.75
1113	1162	2.675032	CGCTTCCAGCATGAAGTCAGTA	60.675	50.000	14.40	0.00	42.58	2.74
1162	1211	4.332428	AGTTGTAACCTTCGTTGTAGCT	57.668	40.909	0.00	0.00	33.17	3.32
1192	1241	1.531883	GGTCGAGATGCAAAATTCCGC	60.532	52.381	0.00	0.00	0.00	5.54
1334	1383	1.279840	GACGTGCTGTTCTTGGTGC	59.720	57.895	0.00	0.00	0.00	5.01
1376	1425	1.153745	GTGTAGTCCAGCTCGCAGG	60.154	63.158	0.00	0.00	0.00	4.85
1413	1462	1.205064	CAAGGCGTCGCAGAAGTTG	59.795	57.895	20.50	9.87	39.69	3.16
1648	1703	3.542648	AGCATGTCATGAATCAGTCCAG	58.457	45.455	17.24	0.00	0.00	3.86
1688	1744	7.118535	TGACGTTGCAACATTAATACTGTATGT	59.881	33.333	28.01	12.73	34.14	2.29
1689	1745	7.460296	TGACGTTGCAACATTAATACTGTATG	58.540	34.615	28.01	9.69	0.00	2.39
1690	1746	7.603963	TGACGTTGCAACATTAATACTGTAT	57.396	32.000	28.01	0.00	0.00	2.29
1691	1747	7.422878	TTGACGTTGCAACATTAATACTGTA	57.577	32.000	28.01	0.00	0.00	2.74
1692	1748	5.933187	TGACGTTGCAACATTAATACTGT	57.067	34.783	28.01	14.54	0.00	3.55
1693	1749	7.750458	AGAATTGACGTTGCAACATTAATACTG	59.250	33.333	28.01	11.49	0.00	2.74
1694	1750	7.816640	AGAATTGACGTTGCAACATTAATACT	58.183	30.769	28.01	15.84	0.00	2.12
1695	1751	8.995906	GTAGAATTGACGTTGCAACATTAATAC	58.004	33.333	28.01	18.98	0.00	1.89
1796	1852	0.104120	GTAATGAAAATGGGGGCCGC	59.896	55.000	14.65	14.65	0.00	6.53
2060	2141	9.896645	ATGATCTCTCTTGTTCTTTTGCTATAA	57.103	29.630	0.00	0.00	0.00	0.98
2088	2169	5.994250	AGTGGTGATAGATGTAGCATTTGT	58.006	37.500	0.00	0.00	0.00	2.83
2152	2233	1.300697	GGGACGTCTTCAAGCGTGT	60.301	57.895	16.46	0.00	41.70	4.49
2377	2460	8.817876	GCTTCCTAAGTATACTGGGAAAGATAT	58.182	37.037	26.70	6.77	37.83	1.63
2424	2507	1.715785	CCCAAACACCCCTGTCATTT	58.284	50.000	0.00	0.00	0.00	2.32
2519	2602	5.466058	TGTGAATTTTGTGATGCCAATGAAC	59.534	36.000	0.00	0.00	0.00	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.