Multiple sequence alignment - TraesCS7A01G029900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G029900 chr7A 100.000 6025 0 0 1 6025 12175373 12181397 0.000000e+00 11127.0
1 TraesCS7A01G029900 chr7A 98.218 505 9 0 1 505 12131140 12131644 0.000000e+00 883.0
2 TraesCS7A01G029900 chr7A 96.875 32 1 0 5376 5407 659654643 659654674 3.000000e-03 54.7
3 TraesCS7A01G029900 chr4A 91.507 2920 154 45 2267 5135 725663213 725660337 0.000000e+00 3932.0
4 TraesCS7A01G029900 chr4A 84.798 1434 142 34 4592 6014 725590353 725588985 0.000000e+00 1371.0
5 TraesCS7A01G029900 chr4A 98.214 504 9 0 1 504 636749568 636750071 0.000000e+00 881.0
6 TraesCS7A01G029900 chr4A 97.817 504 11 0 1 504 636756552 636757055 0.000000e+00 870.0
7 TraesCS7A01G029900 chr4A 87.664 762 61 13 900 1650 725664626 725663887 0.000000e+00 856.0
8 TraesCS7A01G029900 chr4A 92.832 558 27 6 1719 2263 725663855 725663298 0.000000e+00 797.0
9 TraesCS7A01G029900 chr4A 89.209 556 46 6 5441 5988 725659853 725659304 0.000000e+00 682.0
10 TraesCS7A01G029900 chr4A 90.323 124 8 4 5216 5338 725659993 725659873 6.250000e-35 159.0
11 TraesCS7A01G029900 chr4A 100.000 44 0 0 1677 1720 432428179 432428222 1.390000e-11 82.4
12 TraesCS7A01G029900 chr4A 100.000 44 0 0 1677 1720 552087285 552087328 1.390000e-11 82.4
13 TraesCS7A01G029900 chr7D 90.751 1957 141 15 4039 5989 12469810 12471732 0.000000e+00 2575.0
14 TraesCS7A01G029900 chr7D 92.431 1691 94 11 2267 3938 12468096 12469771 0.000000e+00 2383.0
15 TraesCS7A01G029900 chr7D 91.956 547 29 7 1719 2252 12467462 12468006 0.000000e+00 752.0
16 TraesCS7A01G029900 chr7D 83.946 735 73 21 910 1632 12466723 12467424 0.000000e+00 662.0
17 TraesCS7A01G029900 chr6A 98.016 504 9 1 1 504 513965727 513966229 0.000000e+00 874.0
18 TraesCS7A01G029900 chr6A 98.012 503 9 1 1 503 597641832 597642333 0.000000e+00 872.0
19 TraesCS7A01G029900 chr6A 97.817 504 9 2 1 504 298519512 298520013 0.000000e+00 869.0
20 TraesCS7A01G029900 chr6A 100.000 44 0 0 1677 1720 338456256 338456299 1.390000e-11 82.4
21 TraesCS7A01G029900 chr5A 98.016 504 9 1 1 504 26906810 26906308 0.000000e+00 874.0
22 TraesCS7A01G029900 chr5A 97.817 504 10 1 1 504 674036577 674037079 0.000000e+00 869.0
23 TraesCS7A01G029900 chr5A 90.000 50 5 0 5961 6010 537109590 537109639 1.400000e-06 65.8
24 TraesCS7A01G029900 chr7B 97.817 504 10 1 1 504 511061 511563 0.000000e+00 869.0
25 TraesCS7A01G029900 chr1B 85.606 264 31 6 1988 2248 536409010 536409269 2.770000e-68 270.0
26 TraesCS7A01G029900 chr1B 80.692 347 47 15 2246 2584 629882826 629883160 1.000000e-62 252.0
27 TraesCS7A01G029900 chr1B 81.311 305 54 3 1959 2262 536410815 536411117 1.680000e-60 244.0
28 TraesCS7A01G029900 chr1B 83.462 260 41 2 1999 2257 536407176 536407434 2.170000e-59 241.0
29 TraesCS7A01G029900 chr1B 91.818 110 8 1 2106 2215 629882615 629882723 1.050000e-32 152.0
30 TraesCS7A01G029900 chr1B 85.567 97 13 1 5669 5765 617284048 617284143 3.840000e-17 100.0
31 TraesCS7A01G029900 chr3B 81.402 328 41 14 2267 2586 469784684 469784999 3.610000e-62 250.0
32 TraesCS7A01G029900 chr3B 95.312 64 3 0 2143 2206 469784490 469784553 1.070000e-17 102.0
33 TraesCS7A01G029900 chr6B 74.855 688 104 37 2267 2942 709013146 709013776 1.300000e-61 248.0
34 TraesCS7A01G029900 chr6D 84.884 172 16 6 3535 3700 465034040 465033873 1.340000e-36 165.0
35 TraesCS7A01G029900 chr6D 96.875 32 1 0 5380 5411 233159431 233159400 3.000000e-03 54.7
36 TraesCS7A01G029900 chr6D 88.636 44 5 0 5380 5423 260641794 260641751 3.000000e-03 54.7
37 TraesCS7A01G029900 chrUn 100.000 44 0 0 1677 1720 182456388 182456345 1.390000e-11 82.4
38 TraesCS7A01G029900 chrUn 100.000 44 0 0 1677 1720 231550109 231550152 1.390000e-11 82.4
39 TraesCS7A01G029900 chrUn 100.000 44 0 0 1677 1720 301692111 301692154 1.390000e-11 82.4
40 TraesCS7A01G029900 chrUn 94.444 36 2 0 5376 5411 245963213 245963248 8.440000e-04 56.5
41 TraesCS7A01G029900 chr5D 100.000 44 0 0 1677 1720 181475262 181475219 1.390000e-11 82.4
42 TraesCS7A01G029900 chr5D 85.484 62 7 2 5365 5426 408780891 408780832 5.040000e-06 63.9
43 TraesCS7A01G029900 chr5D 94.444 36 2 0 5376 5411 408779706 408779671 8.440000e-04 56.5
44 TraesCS7A01G029900 chr1A 100.000 44 0 0 1677 1720 68928664 68928621 1.390000e-11 82.4
45 TraesCS7A01G029900 chr1A 100.000 44 0 0 1677 1720 334059870 334059913 1.390000e-11 82.4
46 TraesCS7A01G029900 chr3D 89.091 55 4 2 5376 5429 579138746 579138799 3.900000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G029900 chr7A 12175373 12181397 6024 False 11127.000000 11127 100.000000 1 6025 1 chr7A.!!$F2 6024
1 TraesCS7A01G029900 chr7A 12131140 12131644 504 False 883.000000 883 98.218000 1 505 1 chr7A.!!$F1 504
2 TraesCS7A01G029900 chr4A 725588985 725590353 1368 True 1371.000000 1371 84.798000 4592 6014 1 chr4A.!!$R1 1422
3 TraesCS7A01G029900 chr4A 725659304 725664626 5322 True 1285.200000 3932 90.307000 900 5988 5 chr4A.!!$R2 5088
4 TraesCS7A01G029900 chr4A 636749568 636750071 503 False 881.000000 881 98.214000 1 504 1 chr4A.!!$F3 503
5 TraesCS7A01G029900 chr4A 636756552 636757055 503 False 870.000000 870 97.817000 1 504 1 chr4A.!!$F4 503
6 TraesCS7A01G029900 chr7D 12466723 12471732 5009 False 1593.000000 2575 89.771000 910 5989 4 chr7D.!!$F1 5079
7 TraesCS7A01G029900 chr6A 513965727 513966229 502 False 874.000000 874 98.016000 1 504 1 chr6A.!!$F3 503
8 TraesCS7A01G029900 chr6A 597641832 597642333 501 False 872.000000 872 98.012000 1 503 1 chr6A.!!$F4 502
9 TraesCS7A01G029900 chr6A 298519512 298520013 501 False 869.000000 869 97.817000 1 504 1 chr6A.!!$F1 503
10 TraesCS7A01G029900 chr5A 26906308 26906810 502 True 874.000000 874 98.016000 1 504 1 chr5A.!!$R1 503
11 TraesCS7A01G029900 chr5A 674036577 674037079 502 False 869.000000 869 97.817000 1 504 1 chr5A.!!$F2 503
12 TraesCS7A01G029900 chr7B 511061 511563 502 False 869.000000 869 97.817000 1 504 1 chr7B.!!$F1 503
13 TraesCS7A01G029900 chr1B 536407176 536411117 3941 False 251.666667 270 83.459667 1959 2262 3 chr1B.!!$F2 303
14 TraesCS7A01G029900 chr1B 629882615 629883160 545 False 202.000000 252 86.255000 2106 2584 2 chr1B.!!$F3 478
15 TraesCS7A01G029900 chr6B 709013146 709013776 630 False 248.000000 248 74.855000 2267 2942 1 chr6B.!!$F1 675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
582 583 0.031585 GTCAGCCACACACAGACGTA 59.968 55.000 0.00 0.00 0.00 3.57 F
583 584 0.031585 TCAGCCACACACAGACGTAC 59.968 55.000 0.00 0.00 0.00 3.67 F
651 652 0.034477 ATGAGCCCCCAAAACGGTAG 60.034 55.000 0.00 0.00 0.00 3.18 F
702 703 0.035152 AGATTGGCCTTGCGATGACA 60.035 50.000 3.32 0.00 0.00 3.58 F
1708 1736 0.036875 CTCGGACAGGCCCTCTTTTT 59.963 55.000 0.00 0.00 0.00 1.94 F
2092 2133 1.008361 CGTTTGCCGGGCATTTTGAG 61.008 55.000 24.49 7.71 38.76 3.02 F
2858 3008 1.974680 GTTCGTACAACTCCTTCGACG 59.025 52.381 0.00 0.00 0.00 5.12 F
2945 3095 0.390866 ATGAGCTTCCAGACTGCGTG 60.391 55.000 0.00 0.00 0.00 5.34 F
4656 5504 1.037579 TGAGCCTGTCGACGATCCAT 61.038 55.000 11.62 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1689 1717 0.036875 AAAAAGAGGGCCTGTCCGAG 59.963 55.000 12.95 0.0 34.94 4.63 R
2092 2133 0.039618 TTTCATGGTCCTTGAGGCCC 59.960 55.000 0.00 0.0 32.79 5.80 R
2263 2312 7.781324 TCAGTAGATAGCAATGACATATCCA 57.219 36.000 0.00 0.0 0.00 3.41 R
2344 2479 8.450578 TTTCCCATCATCATACTCATGTAAAC 57.549 34.615 0.00 0.0 33.57 2.01 R
2812 2962 2.129607 GTTTGCACACTGAATTGCCTG 58.870 47.619 0.00 0.0 38.00 4.85 R
2921 3071 2.169352 GCAGTCTGGAAGCTCATAAGGA 59.831 50.000 1.14 0.0 0.00 3.36 R
4363 5210 1.154150 GCAACACAGATGAAGCGGC 60.154 57.895 0.00 0.0 0.00 6.53 R
4931 5779 1.278985 CAGATGACAGTAAGGTGGGCA 59.721 52.381 0.00 0.0 0.00 5.36 R
5556 6680 0.400213 TCAATGCGTCAGGGGAAACT 59.600 50.000 0.00 0.0 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
269 270 3.744214 CGGGTGCTAAGCTAATGGAATGA 60.744 47.826 0.00 0.00 0.00 2.57
272 273 4.274459 GGTGCTAAGCTAATGGAATGAGTG 59.726 45.833 0.00 0.00 0.00 3.51
522 523 9.582648 AATAACTTACCTGATAGTTTTGGTGTT 57.417 29.630 0.00 0.00 36.16 3.32
523 524 7.506328 AACTTACCTGATAGTTTTGGTGTTC 57.494 36.000 0.00 0.00 30.72 3.18
524 525 6.838382 ACTTACCTGATAGTTTTGGTGTTCT 58.162 36.000 0.00 0.00 34.33 3.01
525 526 6.935208 ACTTACCTGATAGTTTTGGTGTTCTC 59.065 38.462 0.00 0.00 34.33 2.87
526 527 5.568620 ACCTGATAGTTTTGGTGTTCTCT 57.431 39.130 0.00 0.00 0.00 3.10
527 528 5.941788 ACCTGATAGTTTTGGTGTTCTCTT 58.058 37.500 0.00 0.00 0.00 2.85
528 529 5.998363 ACCTGATAGTTTTGGTGTTCTCTTC 59.002 40.000 0.00 0.00 0.00 2.87
530 531 7.016268 ACCTGATAGTTTTGGTGTTCTCTTCTA 59.984 37.037 0.00 0.00 0.00 2.10
531 532 7.547370 CCTGATAGTTTTGGTGTTCTCTTCTAG 59.453 40.741 0.00 0.00 0.00 2.43
532 533 7.386851 TGATAGTTTTGGTGTTCTCTTCTAGG 58.613 38.462 0.00 0.00 0.00 3.02
533 534 4.390264 AGTTTTGGTGTTCTCTTCTAGGC 58.610 43.478 0.00 0.00 0.00 3.93
534 535 2.743636 TTGGTGTTCTCTTCTAGGCG 57.256 50.000 0.00 0.00 0.00 5.52
536 537 2.799017 TGGTGTTCTCTTCTAGGCGTA 58.201 47.619 0.00 0.00 0.00 4.42
539 540 3.925299 GGTGTTCTCTTCTAGGCGTAAAC 59.075 47.826 0.00 0.00 0.00 2.01
540 541 3.607209 GTGTTCTCTTCTAGGCGTAAACG 59.393 47.826 0.00 0.00 43.27 3.60
553 554 1.859080 CGTAAACGCTAGATTGGCTCC 59.141 52.381 0.00 0.00 0.00 4.70
554 555 2.737359 CGTAAACGCTAGATTGGCTCCA 60.737 50.000 0.00 0.00 0.00 3.86
555 556 1.739067 AAACGCTAGATTGGCTCCAC 58.261 50.000 0.00 0.00 0.00 4.02
556 557 0.613260 AACGCTAGATTGGCTCCACA 59.387 50.000 0.00 0.00 0.00 4.17
557 558 0.613260 ACGCTAGATTGGCTCCACAA 59.387 50.000 0.00 0.00 34.41 3.33
558 559 1.293924 CGCTAGATTGGCTCCACAAG 58.706 55.000 0.00 0.00 33.23 3.16
560 561 2.677902 CGCTAGATTGGCTCCACAAGAA 60.678 50.000 0.00 0.00 33.23 2.52
562 563 2.957402 AGATTGGCTCCACAAGAACA 57.043 45.000 0.00 0.00 33.23 3.18
563 564 2.787994 AGATTGGCTCCACAAGAACAG 58.212 47.619 0.00 0.00 33.23 3.16
564 565 2.107204 AGATTGGCTCCACAAGAACAGT 59.893 45.455 0.00 0.00 33.23 3.55
565 566 1.967319 TTGGCTCCACAAGAACAGTC 58.033 50.000 0.00 0.00 0.00 3.51
567 568 1.202687 TGGCTCCACAAGAACAGTCAG 60.203 52.381 0.00 0.00 0.00 3.51
568 569 0.871057 GCTCCACAAGAACAGTCAGC 59.129 55.000 0.00 0.00 0.00 4.26
569 570 1.517242 CTCCACAAGAACAGTCAGCC 58.483 55.000 0.00 0.00 0.00 4.85
570 571 0.836606 TCCACAAGAACAGTCAGCCA 59.163 50.000 0.00 0.00 0.00 4.75
573 574 1.331756 CACAAGAACAGTCAGCCACAC 59.668 52.381 0.00 0.00 0.00 3.82
574 575 1.065491 ACAAGAACAGTCAGCCACACA 60.065 47.619 0.00 0.00 0.00 3.72
575 576 1.331756 CAAGAACAGTCAGCCACACAC 59.668 52.381 0.00 0.00 0.00 3.82
577 578 0.940126 GAACAGTCAGCCACACACAG 59.060 55.000 0.00 0.00 0.00 3.66
579 580 0.179073 ACAGTCAGCCACACACAGAC 60.179 55.000 0.00 0.00 0.00 3.51
580 581 1.068083 AGTCAGCCACACACAGACG 59.932 57.895 0.00 0.00 34.56 4.18
581 582 1.227263 GTCAGCCACACACAGACGT 60.227 57.895 0.00 0.00 0.00 4.34
582 583 0.031585 GTCAGCCACACACAGACGTA 59.968 55.000 0.00 0.00 0.00 3.57
583 584 0.031585 TCAGCCACACACAGACGTAC 59.968 55.000 0.00 0.00 0.00 3.67
593 594 3.588336 AGACGTACTGAGGCGGTC 58.412 61.111 0.00 0.00 0.00 4.79
594 595 1.303074 AGACGTACTGAGGCGGTCA 60.303 57.895 0.00 0.00 0.00 4.02
595 596 1.154073 GACGTACTGAGGCGGTCAC 60.154 63.158 0.00 0.00 0.00 3.67
596 597 1.584380 GACGTACTGAGGCGGTCACT 61.584 60.000 0.00 0.00 0.00 3.41
597 598 0.321919 ACGTACTGAGGCGGTCACTA 60.322 55.000 0.00 0.00 0.00 2.74
600 601 1.671845 GTACTGAGGCGGTCACTAGAG 59.328 57.143 0.00 0.00 0.00 2.43
601 602 0.328592 ACTGAGGCGGTCACTAGAGA 59.671 55.000 0.00 0.00 0.00 3.10
602 603 1.021202 CTGAGGCGGTCACTAGAGAG 58.979 60.000 0.00 0.00 0.00 3.20
603 604 0.394488 TGAGGCGGTCACTAGAGAGG 60.394 60.000 0.00 0.00 0.00 3.69
604 605 0.394625 GAGGCGGTCACTAGAGAGGT 60.395 60.000 0.00 0.00 0.00 3.85
605 606 0.039911 AGGCGGTCACTAGAGAGGTT 59.960 55.000 0.00 0.00 0.00 3.50
606 607 0.173708 GGCGGTCACTAGAGAGGTTG 59.826 60.000 0.00 0.00 0.00 3.77
608 609 1.178276 CGGTCACTAGAGAGGTTGCT 58.822 55.000 0.00 0.00 0.00 3.91
610 611 2.672478 CGGTCACTAGAGAGGTTGCTTG 60.672 54.545 0.00 0.00 0.00 4.01
612 613 1.276421 TCACTAGAGAGGTTGCTTGGC 59.724 52.381 0.00 0.00 0.00 4.52
613 614 0.247736 ACTAGAGAGGTTGCTTGGCG 59.752 55.000 0.00 0.00 0.00 5.69
614 615 0.460987 CTAGAGAGGTTGCTTGGCGG 60.461 60.000 0.00 0.00 0.00 6.13
615 616 1.192146 TAGAGAGGTTGCTTGGCGGT 61.192 55.000 0.00 0.00 0.00 5.68
616 617 2.281761 AGAGGTTGCTTGGCGGTG 60.282 61.111 0.00 0.00 0.00 4.94
617 618 2.281484 GAGGTTGCTTGGCGGTGA 60.281 61.111 0.00 0.00 0.00 4.02
618 619 2.281761 AGGTTGCTTGGCGGTGAG 60.282 61.111 0.00 0.00 0.00 3.51
631 632 1.576356 CGGTGAGCATCTAAAGAGCC 58.424 55.000 0.00 0.00 34.92 4.70
632 633 1.134699 CGGTGAGCATCTAAAGAGCCA 60.135 52.381 0.00 0.00 34.92 4.75
633 634 2.484417 CGGTGAGCATCTAAAGAGCCAT 60.484 50.000 0.00 0.00 34.92 4.40
634 635 2.877168 GGTGAGCATCTAAAGAGCCATG 59.123 50.000 0.00 0.00 34.92 3.66
635 636 3.432749 GGTGAGCATCTAAAGAGCCATGA 60.433 47.826 0.00 0.00 34.92 3.07
637 638 2.807392 GAGCATCTAAAGAGCCATGAGC 59.193 50.000 0.00 0.00 44.25 4.26
638 639 1.878734 GCATCTAAAGAGCCATGAGCC 59.121 52.381 0.00 0.00 45.47 4.70
639 640 2.502295 CATCTAAAGAGCCATGAGCCC 58.498 52.381 0.00 0.00 45.47 5.19
640 641 0.839946 TCTAAAGAGCCATGAGCCCC 59.160 55.000 0.00 0.00 45.47 5.80
641 642 0.179006 CTAAAGAGCCATGAGCCCCC 60.179 60.000 0.00 0.00 45.47 5.40
642 643 0.918799 TAAAGAGCCATGAGCCCCCA 60.919 55.000 0.00 0.00 45.47 4.96
643 644 1.803453 AAAGAGCCATGAGCCCCCAA 61.803 55.000 0.00 0.00 45.47 4.12
644 645 1.803453 AAGAGCCATGAGCCCCCAAA 61.803 55.000 0.00 0.00 45.47 3.28
646 647 1.607801 GAGCCATGAGCCCCCAAAAC 61.608 60.000 0.00 0.00 45.47 2.43
647 648 3.005540 GCCATGAGCCCCCAAAACG 62.006 63.158 0.00 0.00 34.35 3.60
648 649 2.350458 CCATGAGCCCCCAAAACGG 61.350 63.158 0.00 0.00 0.00 4.44
649 650 1.606313 CATGAGCCCCCAAAACGGT 60.606 57.895 0.00 0.00 0.00 4.83
650 651 0.322997 CATGAGCCCCCAAAACGGTA 60.323 55.000 0.00 0.00 0.00 4.02
651 652 0.034477 ATGAGCCCCCAAAACGGTAG 60.034 55.000 0.00 0.00 0.00 3.18
652 653 1.128809 TGAGCCCCCAAAACGGTAGA 61.129 55.000 0.00 0.00 0.00 2.59
653 654 0.255033 GAGCCCCCAAAACGGTAGAT 59.745 55.000 0.00 0.00 0.00 1.98
654 655 1.487558 GAGCCCCCAAAACGGTAGATA 59.512 52.381 0.00 0.00 0.00 1.98
655 656 1.211212 AGCCCCCAAAACGGTAGATAC 59.789 52.381 0.00 0.00 0.00 2.24
656 657 1.944032 CCCCCAAAACGGTAGATACG 58.056 55.000 0.00 0.00 37.36 3.06
657 658 1.481772 CCCCCAAAACGGTAGATACGA 59.518 52.381 0.00 0.00 34.93 3.43
658 659 2.103601 CCCCCAAAACGGTAGATACGAT 59.896 50.000 0.00 0.00 34.93 3.73
661 662 3.800506 CCCAAAACGGTAGATACGATCAC 59.199 47.826 0.00 0.00 34.93 3.06
662 663 4.441079 CCCAAAACGGTAGATACGATCACT 60.441 45.833 0.00 0.00 34.93 3.41
663 664 4.738740 CCAAAACGGTAGATACGATCACTC 59.261 45.833 0.00 0.00 34.93 3.51
664 665 5.337554 CAAAACGGTAGATACGATCACTCA 58.662 41.667 0.00 0.00 34.93 3.41
665 666 5.769484 AAACGGTAGATACGATCACTCAT 57.231 39.130 0.00 0.00 34.93 2.90
666 667 4.750952 ACGGTAGATACGATCACTCATG 57.249 45.455 0.00 0.00 34.93 3.07
667 668 3.058155 ACGGTAGATACGATCACTCATGC 60.058 47.826 0.00 0.00 34.93 4.06
668 669 3.493272 GGTAGATACGATCACTCATGCG 58.507 50.000 0.00 0.00 0.00 4.73
669 670 2.713895 AGATACGATCACTCATGCGG 57.286 50.000 0.00 0.00 0.00 5.69
670 671 2.230660 AGATACGATCACTCATGCGGA 58.769 47.619 0.00 0.00 0.00 5.54
673 674 0.179127 ACGATCACTCATGCGGACTG 60.179 55.000 0.00 0.00 0.00 3.51
674 675 1.485838 CGATCACTCATGCGGACTGC 61.486 60.000 0.00 0.00 46.70 4.40
686 687 2.406205 GGACTGCCGACGTCTAGAT 58.594 57.895 14.70 0.00 0.00 1.98
687 688 0.739561 GGACTGCCGACGTCTAGATT 59.260 55.000 14.70 0.00 0.00 2.40
688 689 1.534175 GGACTGCCGACGTCTAGATTG 60.534 57.143 14.70 0.00 0.00 2.67
689 690 0.456221 ACTGCCGACGTCTAGATTGG 59.544 55.000 14.70 7.27 0.00 3.16
690 691 0.872021 CTGCCGACGTCTAGATTGGC 60.872 60.000 19.28 19.28 42.76 4.52
692 693 2.017559 GCCGACGTCTAGATTGGCCT 62.018 60.000 16.34 0.00 36.51 5.19
693 694 0.460311 CCGACGTCTAGATTGGCCTT 59.540 55.000 14.70 0.00 0.00 4.35
696 697 0.460284 ACGTCTAGATTGGCCTTGCG 60.460 55.000 3.32 0.00 0.00 4.85
697 698 0.179111 CGTCTAGATTGGCCTTGCGA 60.179 55.000 3.32 0.00 0.00 5.10
698 699 1.539065 CGTCTAGATTGGCCTTGCGAT 60.539 52.381 3.32 0.00 0.00 4.58
701 702 1.869767 CTAGATTGGCCTTGCGATGAC 59.130 52.381 3.32 0.00 0.00 3.06
702 703 0.035152 AGATTGGCCTTGCGATGACA 60.035 50.000 3.32 0.00 0.00 3.58
703 704 0.099436 GATTGGCCTTGCGATGACAC 59.901 55.000 3.32 0.00 0.00 3.67
704 705 0.608856 ATTGGCCTTGCGATGACACA 60.609 50.000 3.32 0.00 0.00 3.72
705 706 0.821301 TTGGCCTTGCGATGACACAA 60.821 50.000 3.32 0.00 0.00 3.33
707 708 0.955428 GGCCTTGCGATGACACAAGA 60.955 55.000 0.00 0.00 44.89 3.02
708 709 0.874390 GCCTTGCGATGACACAAGAA 59.126 50.000 4.39 0.00 44.89 2.52
709 710 1.470098 GCCTTGCGATGACACAAGAAT 59.530 47.619 4.39 0.00 44.89 2.40
710 711 2.095059 GCCTTGCGATGACACAAGAATT 60.095 45.455 4.39 0.00 44.89 2.17
722 723 0.462789 CAAGAATTGCCCATGAGCCC 59.537 55.000 0.00 0.00 40.39 5.19
723 724 0.688749 AAGAATTGCCCATGAGCCCC 60.689 55.000 0.00 0.00 0.00 5.80
725 726 2.877089 GAATTGCCCATGAGCCCCCA 62.877 60.000 0.00 0.00 0.00 4.96
727 728 2.474133 ATTGCCCATGAGCCCCCAAA 62.474 55.000 0.00 0.00 0.00 3.28
728 729 2.284552 GCCCATGAGCCCCCAAAA 60.285 61.111 0.00 0.00 0.00 2.44
729 730 2.659063 GCCCATGAGCCCCCAAAAC 61.659 63.158 0.00 0.00 0.00 2.43
730 731 1.229145 CCCATGAGCCCCCAAAACA 60.229 57.895 0.00 0.00 0.00 2.83
731 732 0.835543 CCCATGAGCCCCCAAAACAA 60.836 55.000 0.00 0.00 0.00 2.83
732 733 0.321346 CCATGAGCCCCCAAAACAAC 59.679 55.000 0.00 0.00 0.00 3.32
733 734 1.341080 CATGAGCCCCCAAAACAACT 58.659 50.000 0.00 0.00 0.00 3.16
734 735 2.524306 CATGAGCCCCCAAAACAACTA 58.476 47.619 0.00 0.00 0.00 2.24
736 737 0.879090 GAGCCCCCAAAACAACTACG 59.121 55.000 0.00 0.00 0.00 3.51
737 738 0.475044 AGCCCCCAAAACAACTACGA 59.525 50.000 0.00 0.00 0.00 3.43
738 739 1.074889 AGCCCCCAAAACAACTACGAT 59.925 47.619 0.00 0.00 0.00 3.73
740 741 2.510613 CCCCCAAAACAACTACGATGT 58.489 47.619 0.00 0.00 0.00 3.06
741 742 2.486592 CCCCCAAAACAACTACGATGTC 59.513 50.000 0.00 0.00 0.00 3.06
742 743 2.158841 CCCCAAAACAACTACGATGTCG 59.841 50.000 0.11 0.11 46.33 4.35
743 744 3.061322 CCCAAAACAACTACGATGTCGA 58.939 45.455 9.67 0.00 43.02 4.20
744 745 3.682858 CCCAAAACAACTACGATGTCGAT 59.317 43.478 9.67 0.00 43.02 3.59
746 747 4.387559 CCAAAACAACTACGATGTCGATCA 59.612 41.667 9.67 0.00 43.02 2.92
747 748 5.305812 CAAAACAACTACGATGTCGATCAC 58.694 41.667 9.67 0.00 43.02 3.06
748 749 3.842732 ACAACTACGATGTCGATCACA 57.157 42.857 9.67 0.00 43.02 3.58
749 750 3.499048 ACAACTACGATGTCGATCACAC 58.501 45.455 9.67 0.00 43.02 3.82
750 751 3.057806 ACAACTACGATGTCGATCACACA 60.058 43.478 9.67 0.00 43.02 3.72
752 753 4.371855 ACTACGATGTCGATCACACATT 57.628 40.909 9.67 0.00 43.02 2.71
754 755 5.271625 ACTACGATGTCGATCACACATTAC 58.728 41.667 9.67 0.00 43.02 1.89
755 756 4.371855 ACGATGTCGATCACACATTACT 57.628 40.909 9.67 0.00 43.02 2.24
756 757 5.494632 ACGATGTCGATCACACATTACTA 57.505 39.130 9.67 0.00 43.02 1.82
758 759 5.296035 ACGATGTCGATCACACATTACTAGA 59.704 40.000 9.67 0.00 43.02 2.43
759 760 6.183360 ACGATGTCGATCACACATTACTAGAA 60.183 38.462 9.67 0.00 43.02 2.10
760 761 6.691388 CGATGTCGATCACACATTACTAGAAA 59.309 38.462 8.36 0.00 43.02 2.52
762 763 8.771920 ATGTCGATCACACATTACTAGAAAAA 57.228 30.769 0.00 0.00 38.04 1.94
763 764 8.771920 TGTCGATCACACATTACTAGAAAAAT 57.228 30.769 0.00 0.00 0.00 1.82
764 765 9.863845 TGTCGATCACACATTACTAGAAAAATA 57.136 29.630 0.00 0.00 0.00 1.40
776 777 6.391227 ACTAGAAAAATAAATCATGGGCGG 57.609 37.500 0.00 0.00 0.00 6.13
777 778 5.891551 ACTAGAAAAATAAATCATGGGCGGT 59.108 36.000 0.00 0.00 0.00 5.68
778 779 5.009854 AGAAAAATAAATCATGGGCGGTG 57.990 39.130 0.00 0.00 0.00 4.94
779 780 4.709397 AGAAAAATAAATCATGGGCGGTGA 59.291 37.500 0.00 0.00 0.00 4.02
780 781 5.363580 AGAAAAATAAATCATGGGCGGTGAT 59.636 36.000 0.00 0.00 37.91 3.06
782 783 1.877637 TAAATCATGGGCGGTGATCG 58.122 50.000 4.08 0.00 35.35 3.69
783 784 0.180171 AAATCATGGGCGGTGATCGA 59.820 50.000 0.00 0.00 42.43 3.59
784 785 0.250038 AATCATGGGCGGTGATCGAG 60.250 55.000 0.00 0.00 42.43 4.04
787 788 1.832608 ATGGGCGGTGATCGAGCTA 60.833 57.895 0.90 0.00 42.43 3.32
788 789 1.399744 ATGGGCGGTGATCGAGCTAA 61.400 55.000 0.90 0.00 42.43 3.09
789 790 1.367840 GGGCGGTGATCGAGCTAAT 59.632 57.895 0.90 0.00 42.43 1.73
792 793 2.547218 GGGCGGTGATCGAGCTAATAAA 60.547 50.000 0.90 0.00 42.43 1.40
793 794 3.128349 GGCGGTGATCGAGCTAATAAAA 58.872 45.455 0.90 0.00 42.43 1.52
794 795 3.184581 GGCGGTGATCGAGCTAATAAAAG 59.815 47.826 0.90 0.00 42.43 2.27
796 797 4.369182 CGGTGATCGAGCTAATAAAAGGT 58.631 43.478 0.90 0.00 42.43 3.50
797 798 4.444720 CGGTGATCGAGCTAATAAAAGGTC 59.555 45.833 0.90 0.00 42.43 3.85
803 804 3.793559 GAGCTAATAAAAGGTCGCCTCA 58.206 45.455 0.00 0.00 34.59 3.86
804 805 4.189231 GAGCTAATAAAAGGTCGCCTCAA 58.811 43.478 0.00 0.00 34.59 3.02
805 806 4.585879 AGCTAATAAAAGGTCGCCTCAAA 58.414 39.130 0.00 0.00 30.89 2.69
806 807 5.007682 AGCTAATAAAAGGTCGCCTCAAAA 58.992 37.500 0.00 0.00 30.89 2.44
807 808 5.123979 AGCTAATAAAAGGTCGCCTCAAAAG 59.876 40.000 0.00 0.00 30.89 2.27
808 809 5.106277 GCTAATAAAAGGTCGCCTCAAAAGT 60.106 40.000 0.00 0.00 30.89 2.66
809 810 6.093082 GCTAATAAAAGGTCGCCTCAAAAGTA 59.907 38.462 0.00 0.00 30.89 2.24
810 811 7.201705 GCTAATAAAAGGTCGCCTCAAAAGTAT 60.202 37.037 0.00 0.00 30.89 2.12
811 812 9.321562 CTAATAAAAGGTCGCCTCAAAAGTATA 57.678 33.333 0.00 0.00 30.89 1.47
812 813 8.747538 AATAAAAGGTCGCCTCAAAAGTATAT 57.252 30.769 0.00 0.00 30.89 0.86
813 814 8.747538 ATAAAAGGTCGCCTCAAAAGTATATT 57.252 30.769 0.00 0.00 30.89 1.28
815 816 7.462571 AAAGGTCGCCTCAAAAGTATATTTT 57.537 32.000 0.00 0.00 30.89 1.82
816 817 6.436843 AGGTCGCCTCAAAAGTATATTTTG 57.563 37.500 6.72 6.72 39.90 2.44
817 818 6.177610 AGGTCGCCTCAAAAGTATATTTTGA 58.822 36.000 13.41 13.41 43.62 2.69
818 819 6.828785 AGGTCGCCTCAAAAGTATATTTTGAT 59.171 34.615 14.22 0.00 44.41 2.57
819 820 6.912591 GGTCGCCTCAAAAGTATATTTTGATG 59.087 38.462 14.22 12.79 44.41 3.07
820 821 6.912591 GTCGCCTCAAAAGTATATTTTGATGG 59.087 38.462 14.22 16.29 44.41 3.51
822 823 7.338196 TCGCCTCAAAAGTATATTTTGATGGAA 59.662 33.333 22.04 13.29 44.41 3.53
823 824 7.645340 CGCCTCAAAAGTATATTTTGATGGAAG 59.355 37.037 22.04 15.62 44.41 3.46
824 825 8.686334 GCCTCAAAAGTATATTTTGATGGAAGA 58.314 33.333 22.04 3.59 44.41 2.87
849 850 6.875926 AAAGAAAGATAAAATCATGCACGC 57.124 33.333 0.00 0.00 0.00 5.34
850 851 5.565592 AGAAAGATAAAATCATGCACGCA 57.434 34.783 0.00 0.00 0.00 5.24
851 852 5.575957 AGAAAGATAAAATCATGCACGCAG 58.424 37.500 0.00 0.00 0.00 5.18
854 855 6.866010 AAGATAAAATCATGCACGCAGATA 57.134 33.333 0.00 0.00 0.00 1.98
856 857 6.839033 AGATAAAATCATGCACGCAGATATG 58.161 36.000 0.00 0.00 0.00 1.78
857 858 6.652062 AGATAAAATCATGCACGCAGATATGA 59.348 34.615 0.00 0.00 34.42 2.15
858 859 4.478843 AAATCATGCACGCAGATATGAC 57.521 40.909 0.00 0.00 32.90 3.06
859 860 2.600470 TCATGCACGCAGATATGACA 57.400 45.000 0.00 0.00 0.00 3.58
860 861 2.903798 TCATGCACGCAGATATGACAA 58.096 42.857 0.00 0.00 0.00 3.18
861 862 3.269178 TCATGCACGCAGATATGACAAA 58.731 40.909 0.00 0.00 0.00 2.83
862 863 3.878699 TCATGCACGCAGATATGACAAAT 59.121 39.130 0.00 0.00 0.00 2.32
863 864 4.336153 TCATGCACGCAGATATGACAAATT 59.664 37.500 0.00 0.00 0.00 1.82
864 865 4.277257 TGCACGCAGATATGACAAATTC 57.723 40.909 0.00 0.00 0.00 2.17
867 868 4.201950 GCACGCAGATATGACAAATTCCTT 60.202 41.667 0.00 0.00 0.00 3.36
868 869 5.677091 GCACGCAGATATGACAAATTCCTTT 60.677 40.000 0.00 0.00 0.00 3.11
869 870 6.324819 CACGCAGATATGACAAATTCCTTTT 58.675 36.000 0.00 0.00 0.00 2.27
872 873 6.237648 CGCAGATATGACAAATTCCTTTTTGC 60.238 38.462 0.00 0.00 39.65 3.68
875 876 8.653338 CAGATATGACAAATTCCTTTTTGCAAG 58.347 33.333 0.00 0.00 39.65 4.01
877 878 5.096443 TGACAAATTCCTTTTTGCAAGGT 57.904 34.783 0.00 0.00 39.65 3.50
879 880 5.096443 ACAAATTCCTTTTTGCAAGGTCA 57.904 34.783 0.00 0.00 39.65 4.02
880 881 4.875536 ACAAATTCCTTTTTGCAAGGTCAC 59.124 37.500 0.00 0.00 39.65 3.67
882 883 2.045561 TCCTTTTTGCAAGGTCACGA 57.954 45.000 0.00 0.00 38.55 4.35
886 887 1.452145 TTTTGCAAGGTCACGAGGCC 61.452 55.000 0.00 0.00 0.00 5.19
887 888 2.616797 TTTGCAAGGTCACGAGGCCA 62.617 55.000 5.01 0.00 0.00 5.36
888 889 2.281484 GCAAGGTCACGAGGCCAA 60.281 61.111 5.01 0.00 0.00 4.52
889 890 1.896660 GCAAGGTCACGAGGCCAAA 60.897 57.895 5.01 0.00 0.00 3.28
890 891 1.949257 CAAGGTCACGAGGCCAAAC 59.051 57.895 5.01 0.00 0.00 2.93
891 892 1.597027 AAGGTCACGAGGCCAAACG 60.597 57.895 5.01 10.64 0.00 3.60
892 893 2.029964 GGTCACGAGGCCAAACGA 59.970 61.111 20.27 2.71 0.00 3.85
894 895 1.161563 GGTCACGAGGCCAAACGAAA 61.162 55.000 20.27 7.65 0.00 3.46
895 896 0.658897 GTCACGAGGCCAAACGAAAA 59.341 50.000 20.27 5.65 0.00 2.29
897 898 0.660300 CACGAGGCCAAACGAAAAGC 60.660 55.000 20.27 0.00 0.00 3.51
898 899 1.081442 CGAGGCCAAACGAAAAGCC 60.081 57.895 5.01 0.00 46.13 4.35
904 905 2.328473 GCCAAACGAAAAGCCTTGATC 58.672 47.619 0.00 0.00 0.00 2.92
907 908 4.559153 CCAAACGAAAAGCCTTGATCATT 58.441 39.130 0.00 0.00 0.00 2.57
933 934 1.740380 CGGATGAGATGAAGCCACGTT 60.740 52.381 0.00 0.00 0.00 3.99
934 935 2.481276 CGGATGAGATGAAGCCACGTTA 60.481 50.000 0.00 0.00 0.00 3.18
968 969 3.226777 CATATCTCCGTCCCTGTCTCTT 58.773 50.000 0.00 0.00 0.00 2.85
969 970 4.399219 CATATCTCCGTCCCTGTCTCTTA 58.601 47.826 0.00 0.00 0.00 2.10
970 971 3.603965 ATCTCCGTCCCTGTCTCTTAT 57.396 47.619 0.00 0.00 0.00 1.73
971 972 4.726035 ATCTCCGTCCCTGTCTCTTATA 57.274 45.455 0.00 0.00 0.00 0.98
972 973 4.088056 TCTCCGTCCCTGTCTCTTATAG 57.912 50.000 0.00 0.00 0.00 1.31
973 974 3.458857 TCTCCGTCCCTGTCTCTTATAGT 59.541 47.826 0.00 0.00 0.00 2.12
990 991 7.010771 TCTTATAGTTATAGAGAGCAGGGCAA 58.989 38.462 0.00 0.00 0.00 4.52
996 999 0.183492 AGAGAGCAGGGCAACAACAA 59.817 50.000 0.00 0.00 39.74 2.83
1008 1011 5.240844 AGGGCAACAACAAAACATACTACTC 59.759 40.000 0.00 0.00 39.74 2.59
1106 1112 0.179026 CGTGGTAGGATCCTCCGAGA 60.179 60.000 20.22 0.00 42.75 4.04
1159 1175 0.174845 CGAATCTTCCGCCAGGTACA 59.825 55.000 0.00 0.00 39.05 2.90
1191 1207 0.729690 GCACGGAGATTTCTTGGCTC 59.270 55.000 0.00 0.00 0.00 4.70
1197 1213 3.192541 GAGATTTCTTGGCTCTCCTCC 57.807 52.381 0.00 0.00 31.25 4.30
1198 1214 2.771372 GAGATTTCTTGGCTCTCCTCCT 59.229 50.000 0.00 0.00 31.25 3.69
1200 1216 1.280457 TTTCTTGGCTCTCCTCCTCC 58.720 55.000 0.00 0.00 0.00 4.30
1311 1328 0.182537 TGGCCTGGATTGGGTTATCG 59.817 55.000 3.32 0.00 0.00 2.92
1326 1343 2.812591 GTTATCGCGGGAGATCAGTCTA 59.187 50.000 6.13 0.00 33.97 2.59
1333 1350 2.238521 GGGAGATCAGTCTAGCTCTGG 58.761 57.143 12.47 0.00 33.97 3.86
1336 1353 2.031120 AGATCAGTCTAGCTCTGGTGC 58.969 52.381 12.47 0.00 34.15 5.01
1350 1367 2.394563 GGTGCTCTCTTTGCTCGCC 61.395 63.158 0.00 0.00 0.00 5.54
1379 1396 5.353123 GCGATCTACTCCGAAATAGATCTCT 59.647 44.000 18.60 0.00 46.27 3.10
1385 1402 5.020132 ACTCCGAAATAGATCTCTATGGGG 58.980 45.833 0.00 0.00 39.02 4.96
1390 1407 5.246203 CGAAATAGATCTCTATGGGGTGGAA 59.754 44.000 0.00 0.00 39.02 3.53
1412 1429 1.134371 GGTACTCCAATCCAGTCCAGC 60.134 57.143 0.00 0.00 0.00 4.85
1448 1465 2.414785 ATCCAATTCGTTGCGGCCC 61.415 57.895 0.00 0.00 0.00 5.80
1484 1506 2.097036 CAATTGCCAGCTGATTCCAGA 58.903 47.619 17.39 0.00 43.02 3.86
1575 1597 5.071519 GGGATCCTTCTTGATCTGATGAAGA 59.928 44.000 14.35 14.35 40.80 2.87
1583 1605 2.171870 TGATCTGATGAAGATGGCAGCA 59.828 45.455 5.19 0.00 46.12 4.41
1584 1606 2.034104 TCTGATGAAGATGGCAGCAC 57.966 50.000 5.19 0.00 0.00 4.40
1585 1607 1.022735 CTGATGAAGATGGCAGCACC 58.977 55.000 5.19 0.00 39.84 5.01
1586 1608 0.622136 TGATGAAGATGGCAGCACCT 59.378 50.000 5.19 0.00 40.22 4.00
1587 1609 1.005097 TGATGAAGATGGCAGCACCTT 59.995 47.619 5.19 0.00 40.22 3.50
1588 1610 1.404391 GATGAAGATGGCAGCACCTTG 59.596 52.381 5.19 0.00 40.22 3.61
1589 1611 1.246056 TGAAGATGGCAGCACCTTGC 61.246 55.000 5.19 0.00 45.46 4.01
1617 1639 1.580066 AAAGGGGGCGATGATTCCCA 61.580 55.000 6.14 0.00 44.43 4.37
1623 1645 0.451783 GGCGATGATTCCCAACACAC 59.548 55.000 0.00 0.00 0.00 3.82
1661 1689 5.990120 AGGGGAATGAATTCTTGAAACAG 57.010 39.130 7.05 0.00 37.00 3.16
1662 1690 4.221482 AGGGGAATGAATTCTTGAAACAGC 59.779 41.667 7.05 0.00 37.00 4.40
1664 1692 5.405797 GGGAATGAATTCTTGAAACAGCTC 58.594 41.667 7.05 0.00 37.00 4.09
1678 1706 1.074752 CAGCTCGGCTCTGTCTTTTC 58.925 55.000 0.00 0.00 36.40 2.29
1679 1707 0.972883 AGCTCGGCTCTGTCTTTTCT 59.027 50.000 0.00 0.00 30.62 2.52
1680 1708 1.346068 AGCTCGGCTCTGTCTTTTCTT 59.654 47.619 0.00 0.00 30.62 2.52
1681 1709 2.147150 GCTCGGCTCTGTCTTTTCTTT 58.853 47.619 0.00 0.00 0.00 2.52
1682 1710 3.006967 AGCTCGGCTCTGTCTTTTCTTTA 59.993 43.478 0.00 0.00 30.62 1.85
1684 1712 4.393371 GCTCGGCTCTGTCTTTTCTTTATT 59.607 41.667 0.00 0.00 0.00 1.40
1686 1714 6.481954 TCGGCTCTGTCTTTTCTTTATTTC 57.518 37.500 0.00 0.00 0.00 2.17
1687 1715 5.411669 TCGGCTCTGTCTTTTCTTTATTTCC 59.588 40.000 0.00 0.00 0.00 3.13
1688 1716 5.412904 CGGCTCTGTCTTTTCTTTATTTCCT 59.587 40.000 0.00 0.00 0.00 3.36
1689 1717 6.402658 CGGCTCTGTCTTTTCTTTATTTCCTC 60.403 42.308 0.00 0.00 0.00 3.71
1693 1721 6.874134 TCTGTCTTTTCTTTATTTCCTCTCGG 59.126 38.462 0.00 0.00 0.00 4.63
1694 1722 6.765403 TGTCTTTTCTTTATTTCCTCTCGGA 58.235 36.000 0.00 0.00 37.60 4.55
1695 1723 6.649557 TGTCTTTTCTTTATTTCCTCTCGGAC 59.350 38.462 0.00 0.00 39.60 4.79
1696 1724 6.649557 GTCTTTTCTTTATTTCCTCTCGGACA 59.350 38.462 0.00 0.00 39.60 4.02
1697 1725 6.874134 TCTTTTCTTTATTTCCTCTCGGACAG 59.126 38.462 0.00 0.00 39.60 3.51
1698 1726 4.737855 TCTTTATTTCCTCTCGGACAGG 57.262 45.455 0.00 0.00 39.60 4.00
1699 1727 2.981859 TTATTTCCTCTCGGACAGGC 57.018 50.000 0.00 0.00 39.60 4.85
1700 1728 1.120530 TATTTCCTCTCGGACAGGCC 58.879 55.000 0.00 0.00 39.60 5.19
1701 1729 1.627297 ATTTCCTCTCGGACAGGCCC 61.627 60.000 0.00 0.00 39.60 5.80
1706 1734 1.229209 TCTCGGACAGGCCCTCTTT 60.229 57.895 0.00 0.00 0.00 2.52
1707 1735 0.836400 TCTCGGACAGGCCCTCTTTT 60.836 55.000 0.00 0.00 0.00 2.27
1708 1736 0.036875 CTCGGACAGGCCCTCTTTTT 59.963 55.000 0.00 0.00 0.00 1.94
1726 1754 4.799564 TTTTTCATTCGAATGGAAGGGG 57.200 40.909 32.03 10.22 35.43 4.79
1742 1771 4.262938 GGAAGGGGGCATATGTAGTTAGTC 60.263 50.000 4.29 0.00 0.00 2.59
1775 1804 1.590932 CATCGAGCTTCAGGATTGGG 58.409 55.000 0.00 0.00 0.00 4.12
1803 1832 3.248171 CGTCTTGCCGTCTAGCGC 61.248 66.667 0.00 0.00 39.71 5.92
1804 1833 2.126071 GTCTTGCCGTCTAGCGCA 60.126 61.111 11.47 0.00 39.71 6.09
1829 1858 5.353956 AGCGTGCATGTTAACATAAGAATGA 59.646 36.000 20.39 0.00 36.54 2.57
1851 1880 1.300266 TTTTGTAACTAGCGGCGCCC 61.300 55.000 30.40 14.23 0.00 6.13
1883 1924 2.095263 GGCGTTGCTTGATTTTAGCTCA 60.095 45.455 0.00 0.00 39.38 4.26
1889 1930 4.765273 TGCTTGATTTTAGCTCATCCGTA 58.235 39.130 0.00 0.00 39.38 4.02
1953 1994 1.198094 TGCCGAATGGAGGAGGTTGA 61.198 55.000 0.00 0.00 37.49 3.18
1960 2001 4.097361 GAGGAGGTTGACCCCGCC 62.097 72.222 0.00 0.00 44.21 6.13
2092 2133 1.008361 CGTTTGCCGGGCATTTTGAG 61.008 55.000 24.49 7.71 38.76 3.02
2242 2284 5.872070 AGCTTACTAGAGCAATGTGTTTCTC 59.128 40.000 6.24 0.00 45.12 2.87
2344 2479 6.644347 ACTACAATCAACCCTATCTCAGTTG 58.356 40.000 0.00 0.00 41.75 3.16
2587 2730 5.130975 ACCTTCTACATATGCTGACATCCAA 59.869 40.000 1.58 0.00 37.74 3.53
2709 2858 5.468072 CAGTCTCTGTTTTCTGTAGCAACAT 59.532 40.000 0.00 0.00 34.37 2.71
2790 2940 2.413634 GGCCTTAATTTTCGACGGTGTG 60.414 50.000 0.00 0.00 0.00 3.82
2812 2962 5.805994 GTGTAGAAAGTGGTAGTGCTATGTC 59.194 44.000 0.00 0.00 0.00 3.06
2858 3008 1.974680 GTTCGTACAACTCCTTCGACG 59.025 52.381 0.00 0.00 0.00 5.12
2915 3065 8.571336 CCAGTTTTGTTTAGAGATGTCAAGATT 58.429 33.333 0.00 0.00 0.00 2.40
2945 3095 0.390866 ATGAGCTTCCAGACTGCGTG 60.391 55.000 0.00 0.00 0.00 5.34
3067 3222 4.678743 GGGTGGGGGTGGTCTTGC 62.679 72.222 0.00 0.00 0.00 4.01
3348 3514 6.674760 GCATCGTAACTGAATAAACACTTCCC 60.675 42.308 0.00 0.00 0.00 3.97
3395 3561 4.450976 TCTTCAGCTTCTGTTTAGTTGCA 58.549 39.130 0.00 0.00 32.61 4.08
3399 3565 4.640201 TCAGCTTCTGTTTAGTTGCAACTT 59.360 37.500 35.20 19.78 35.33 2.66
3410 3576 8.254508 TGTTTAGTTGCAACTTTTGGACTTATT 58.745 29.630 35.20 10.63 40.37 1.40
3484 3719 2.189342 GAACTACTAAGCTCAGCTGCG 58.811 52.381 9.47 3.41 39.62 5.18
3580 3815 6.925610 TCAACAGACAAATATACTGATGGC 57.074 37.500 0.00 0.00 35.93 4.40
3642 4448 7.668469 GGGGGAACTTCTTTTACTAATGAGAAA 59.332 37.037 0.00 0.00 0.00 2.52
3877 4684 1.269778 GGGTGCTTTCAGTTTCTTGGC 60.270 52.381 0.00 0.00 0.00 4.52
3902 4709 6.200475 CGCACTAGATTATGCTATGATCATGG 59.800 42.308 18.72 16.47 39.79 3.66
3990 4799 2.383368 TTGGGTTTCCGTATGTACCG 57.617 50.000 0.00 0.00 35.24 4.02
4078 4897 3.968649 TCTCTGCACTGAAATTGTTTGC 58.031 40.909 0.00 0.00 0.00 3.68
4363 5210 3.479505 TGTTGTCACAACTGTTTTCGG 57.520 42.857 21.23 0.00 0.00 4.30
4443 5291 2.224018 GGCAACAAATTGTCTCCTTGCA 60.224 45.455 17.85 0.00 37.46 4.08
4656 5504 1.037579 TGAGCCTGTCGACGATCCAT 61.038 55.000 11.62 0.00 0.00 3.41
4741 5589 3.495629 GGCATAGATGTCTTGAGGCATCA 60.496 47.826 23.19 12.26 42.72 3.07
4742 5590 3.747010 GCATAGATGTCTTGAGGCATCAG 59.253 47.826 23.19 14.94 42.72 2.90
4760 5608 2.362503 TCGCCATGGACGAGGAGT 60.363 61.111 22.05 0.00 33.96 3.85
4931 5779 5.534207 TGAATTGAATTCTGCCAGTGTTT 57.466 34.783 17.76 0.00 39.96 2.83
4937 5785 1.391157 TTCTGCCAGTGTTTGCCCAC 61.391 55.000 0.00 0.00 35.53 4.61
4959 5808 3.493350 CCTTACTGTCATCTGGGGAATCG 60.493 52.174 0.00 0.00 0.00 3.34
4967 5816 0.614697 TCTGGGGAATCGTCTGCTGA 60.615 55.000 0.00 0.00 0.00 4.26
4998 5848 0.528470 ACCGTTGGTTGGTTGTTGTG 59.472 50.000 0.00 0.00 35.82 3.33
5130 5986 1.408702 TCTTTGGTTTGCAGGCAGTTC 59.591 47.619 0.00 0.00 0.00 3.01
5138 5996 4.429108 GTTTGCAGGCAGTTCTTTTACAA 58.571 39.130 0.00 0.00 0.00 2.41
5145 6003 6.699642 GCAGGCAGTTCTTTTACAATTTGTTA 59.300 34.615 7.45 0.00 0.00 2.41
5147 6005 7.169140 CAGGCAGTTCTTTTACAATTTGTTACC 59.831 37.037 7.45 0.00 0.00 2.85
5148 6006 6.981559 GGCAGTTCTTTTACAATTTGTTACCA 59.018 34.615 7.45 0.00 0.00 3.25
5167 6025 3.636764 ACCAAGTGTTTCCTGTGAAATCC 59.363 43.478 0.00 0.00 42.20 3.01
5169 6027 4.281688 CCAAGTGTTTCCTGTGAAATCCAT 59.718 41.667 0.00 0.00 42.20 3.41
5182 6040 5.476254 TGTGAAATCCATGCAGTACATTTCA 59.524 36.000 16.21 16.21 39.83 2.69
5187 6045 2.947652 CCATGCAGTACATTTCAGGAGG 59.052 50.000 0.00 0.00 36.64 4.30
5222 6341 1.533625 TTGCAGGGATTTTGGAGTCG 58.466 50.000 0.00 0.00 0.00 4.18
5225 6344 1.032114 CAGGGATTTTGGAGTCGGGC 61.032 60.000 0.00 0.00 0.00 6.13
5309 6428 4.399618 TGTTTTTCCCATGAAACGAGAACA 59.600 37.500 0.00 0.00 40.12 3.18
5364 6483 7.865707 ACAACAGTGTGTCTAAATCAATCTTC 58.134 34.615 0.00 0.00 36.31 2.87
5365 6484 7.498900 ACAACAGTGTGTCTAAATCAATCTTCA 59.501 33.333 0.00 0.00 36.31 3.02
5366 6485 8.344831 CAACAGTGTGTCTAAATCAATCTTCAA 58.655 33.333 0.00 0.00 0.00 2.69
5367 6486 8.627208 ACAGTGTGTCTAAATCAATCTTCAAT 57.373 30.769 0.00 0.00 0.00 2.57
5368 6487 8.725148 ACAGTGTGTCTAAATCAATCTTCAATC 58.275 33.333 0.00 0.00 0.00 2.67
5369 6488 8.944029 CAGTGTGTCTAAATCAATCTTCAATCT 58.056 33.333 0.00 0.00 0.00 2.40
5370 6489 9.512588 AGTGTGTCTAAATCAATCTTCAATCTT 57.487 29.630 0.00 0.00 0.00 2.40
5406 6525 6.604735 AGATACATCCATTTAAGCGACAAC 57.395 37.500 0.00 0.00 0.00 3.32
5407 6526 5.527582 AGATACATCCATTTAAGCGACAACC 59.472 40.000 0.00 0.00 0.00 3.77
5413 6532 4.082463 TCCATTTAAGCGACAACCAATTCC 60.082 41.667 0.00 0.00 0.00 3.01
5414 6533 4.321601 CCATTTAAGCGACAACCAATTCCA 60.322 41.667 0.00 0.00 0.00 3.53
5433 6556 3.194968 TCCAGACGGAGGAAGTACAAATC 59.805 47.826 0.00 0.00 35.91 2.17
5437 6560 5.643777 CAGACGGAGGAAGTACAAATCAAAT 59.356 40.000 0.00 0.00 0.00 2.32
5439 6562 5.556915 ACGGAGGAAGTACAAATCAAATGA 58.443 37.500 0.00 0.00 0.00 2.57
5458 6581 8.034215 TCAAATGACAAACAAACACTGAAGAAT 58.966 29.630 0.00 0.00 0.00 2.40
5459 6582 7.760131 AATGACAAACAAACACTGAAGAATG 57.240 32.000 0.00 0.00 0.00 2.67
5489 6612 7.360361 ACAATGTTTCTCAACCGATCTTAAAC 58.640 34.615 0.00 0.00 31.02 2.01
5495 6618 7.519032 TTCTCAACCGATCTTAAACCAAAAT 57.481 32.000 0.00 0.00 0.00 1.82
5502 6625 5.469479 CGATCTTAAACCAAAATGGCAACT 58.531 37.500 0.00 0.00 42.67 3.16
5521 6644 4.613925 ACTTCTTGCAGTTGAGATCTGA 57.386 40.909 0.00 0.00 35.20 3.27
5590 6717 6.923508 TGACGCATTGATTAGTATCTTAGGTG 59.076 38.462 0.00 0.00 0.00 4.00
5595 6722 7.715249 GCATTGATTAGTATCTTAGGTGTCCAA 59.285 37.037 0.00 0.00 0.00 3.53
5634 6761 8.806429 TGCTTCAATAAATCTATGGAAGTTCA 57.194 30.769 5.01 0.00 43.50 3.18
5635 6762 8.896744 TGCTTCAATAAATCTATGGAAGTTCAG 58.103 33.333 5.01 0.00 43.50 3.02
5659 6786 9.561270 CAGTCTGTATTAATACATGGAGATACG 57.439 37.037 24.81 12.37 41.92 3.06
5660 6787 8.244802 AGTCTGTATTAATACATGGAGATACGC 58.755 37.037 24.81 9.61 41.92 4.42
5661 6788 7.488471 GTCTGTATTAATACATGGAGATACGCC 59.512 40.741 24.81 6.58 41.92 5.68
5662 6789 7.177744 TCTGTATTAATACATGGAGATACGCCA 59.822 37.037 24.81 0.00 41.92 5.69
5838 6971 2.253603 CGCAAGCAAAAGCATAAGACC 58.746 47.619 0.00 0.00 0.00 3.85
5900 7033 7.426929 GCATTAGCATACAACTAGCACTAAT 57.573 36.000 0.00 0.00 41.58 1.73
5901 7034 8.534333 GCATTAGCATACAACTAGCACTAATA 57.466 34.615 0.00 0.00 41.58 0.98
5902 7035 9.155975 GCATTAGCATACAACTAGCACTAATAT 57.844 33.333 0.00 0.00 41.58 1.28
6006 7140 3.684788 ACTGGATACTTGCATTCACGAAC 59.315 43.478 0.00 0.00 37.61 3.95
6011 7145 0.893270 CTTGCATTCACGAACCCCCA 60.893 55.000 0.00 0.00 0.00 4.96
6012 7146 1.175983 TTGCATTCACGAACCCCCAC 61.176 55.000 0.00 0.00 0.00 4.61
6013 7147 1.303317 GCATTCACGAACCCCCACT 60.303 57.895 0.00 0.00 0.00 4.00
6014 7148 0.035820 GCATTCACGAACCCCCACTA 60.036 55.000 0.00 0.00 0.00 2.74
6015 7149 1.408266 GCATTCACGAACCCCCACTAT 60.408 52.381 0.00 0.00 0.00 2.12
6016 7150 2.158871 GCATTCACGAACCCCCACTATA 60.159 50.000 0.00 0.00 0.00 1.31
6017 7151 3.463944 CATTCACGAACCCCCACTATAC 58.536 50.000 0.00 0.00 0.00 1.47
6018 7152 1.488390 TCACGAACCCCCACTATACC 58.512 55.000 0.00 0.00 0.00 2.73
6019 7153 1.007479 TCACGAACCCCCACTATACCT 59.993 52.381 0.00 0.00 0.00 3.08
6020 7154 1.138266 CACGAACCCCCACTATACCTG 59.862 57.143 0.00 0.00 0.00 4.00
6021 7155 1.007479 ACGAACCCCCACTATACCTGA 59.993 52.381 0.00 0.00 0.00 3.86
6022 7156 2.326428 CGAACCCCCACTATACCTGAT 58.674 52.381 0.00 0.00 0.00 2.90
6023 7157 2.704065 CGAACCCCCACTATACCTGATT 59.296 50.000 0.00 0.00 0.00 2.57
6024 7158 3.135895 CGAACCCCCACTATACCTGATTT 59.864 47.826 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
360 361 6.680872 GCCTCTACTTGACTAGCTCGTTAATT 60.681 42.308 0.00 0.00 0.00 1.40
505 506 6.234177 AGAAGAGAACACCAAAACTATCAGG 58.766 40.000 0.00 0.00 0.00 3.86
506 507 7.547370 CCTAGAAGAGAACACCAAAACTATCAG 59.453 40.741 0.00 0.00 0.00 2.90
507 508 7.386851 CCTAGAAGAGAACACCAAAACTATCA 58.613 38.462 0.00 0.00 0.00 2.15
508 509 6.314152 GCCTAGAAGAGAACACCAAAACTATC 59.686 42.308 0.00 0.00 0.00 2.08
509 510 6.174049 GCCTAGAAGAGAACACCAAAACTAT 58.826 40.000 0.00 0.00 0.00 2.12
510 511 5.548406 GCCTAGAAGAGAACACCAAAACTA 58.452 41.667 0.00 0.00 0.00 2.24
511 512 4.390264 GCCTAGAAGAGAACACCAAAACT 58.610 43.478 0.00 0.00 0.00 2.66
515 516 1.968493 ACGCCTAGAAGAGAACACCAA 59.032 47.619 0.00 0.00 0.00 3.67
516 517 1.629043 ACGCCTAGAAGAGAACACCA 58.371 50.000 0.00 0.00 0.00 4.17
517 518 3.863142 TTACGCCTAGAAGAGAACACC 57.137 47.619 0.00 0.00 0.00 4.16
518 519 3.607209 CGTTTACGCCTAGAAGAGAACAC 59.393 47.826 0.00 0.00 0.00 3.32
519 520 3.829948 CGTTTACGCCTAGAAGAGAACA 58.170 45.455 0.00 0.00 0.00 3.18
533 534 1.859080 GGAGCCAATCTAGCGTTTACG 59.141 52.381 0.00 0.00 43.27 3.18
534 535 2.608090 GTGGAGCCAATCTAGCGTTTAC 59.392 50.000 0.00 0.00 34.64 2.01
536 537 1.003118 TGTGGAGCCAATCTAGCGTTT 59.997 47.619 0.00 0.00 34.64 3.60
539 540 1.134699 TCTTGTGGAGCCAATCTAGCG 60.135 52.381 0.00 0.00 34.64 4.26
540 541 2.680339 GTTCTTGTGGAGCCAATCTAGC 59.320 50.000 0.00 0.00 0.00 3.42
541 542 3.937706 CTGTTCTTGTGGAGCCAATCTAG 59.062 47.826 0.00 0.00 0.00 2.43
542 543 3.327757 ACTGTTCTTGTGGAGCCAATCTA 59.672 43.478 0.00 0.00 0.00 1.98
543 544 2.107204 ACTGTTCTTGTGGAGCCAATCT 59.893 45.455 0.00 0.00 0.00 2.40
545 546 2.158623 TGACTGTTCTTGTGGAGCCAAT 60.159 45.455 0.00 0.00 0.00 3.16
546 547 1.211703 TGACTGTTCTTGTGGAGCCAA 59.788 47.619 0.00 0.00 0.00 4.52
547 548 0.836606 TGACTGTTCTTGTGGAGCCA 59.163 50.000 0.00 0.00 0.00 4.75
548 549 1.517242 CTGACTGTTCTTGTGGAGCC 58.483 55.000 0.00 0.00 0.00 4.70
549 550 0.871057 GCTGACTGTTCTTGTGGAGC 59.129 55.000 0.00 0.00 0.00 4.70
550 551 1.202687 TGGCTGACTGTTCTTGTGGAG 60.203 52.381 0.00 0.00 0.00 3.86
552 553 0.947244 GTGGCTGACTGTTCTTGTGG 59.053 55.000 0.00 0.00 0.00 4.17
553 554 1.331756 GTGTGGCTGACTGTTCTTGTG 59.668 52.381 0.00 0.00 0.00 3.33
554 555 1.065491 TGTGTGGCTGACTGTTCTTGT 60.065 47.619 0.00 0.00 0.00 3.16
555 556 1.331756 GTGTGTGGCTGACTGTTCTTG 59.668 52.381 0.00 0.00 0.00 3.02
556 557 1.065491 TGTGTGTGGCTGACTGTTCTT 60.065 47.619 0.00 0.00 0.00 2.52
557 558 0.541392 TGTGTGTGGCTGACTGTTCT 59.459 50.000 0.00 0.00 0.00 3.01
558 559 0.940126 CTGTGTGTGGCTGACTGTTC 59.060 55.000 0.00 0.00 0.00 3.18
560 561 0.179073 GTCTGTGTGTGGCTGACTGT 60.179 55.000 0.00 0.00 33.76 3.55
562 563 1.068083 CGTCTGTGTGTGGCTGACT 59.932 57.895 0.00 0.00 34.19 3.41
563 564 0.031585 TACGTCTGTGTGTGGCTGAC 59.968 55.000 0.00 0.00 0.00 3.51
564 565 0.031585 GTACGTCTGTGTGTGGCTGA 59.968 55.000 0.00 0.00 0.00 4.26
565 566 0.032130 AGTACGTCTGTGTGTGGCTG 59.968 55.000 0.00 0.00 0.00 4.85
567 568 0.031585 TCAGTACGTCTGTGTGTGGC 59.968 55.000 12.62 0.00 43.97 5.01
568 569 1.335964 CCTCAGTACGTCTGTGTGTGG 60.336 57.143 12.62 3.22 43.97 4.17
569 570 1.930817 GCCTCAGTACGTCTGTGTGTG 60.931 57.143 12.62 2.95 43.97 3.82
570 571 0.314302 GCCTCAGTACGTCTGTGTGT 59.686 55.000 12.62 0.00 43.97 3.72
573 574 1.154016 CCGCCTCAGTACGTCTGTG 60.154 63.158 12.62 10.71 43.97 3.66
574 575 1.584380 GACCGCCTCAGTACGTCTGT 61.584 60.000 12.62 0.00 43.97 3.41
575 576 1.136984 GACCGCCTCAGTACGTCTG 59.863 63.158 0.00 0.00 44.85 3.51
577 578 1.154073 GTGACCGCCTCAGTACGTC 60.154 63.158 0.00 0.00 0.00 4.34
579 580 0.377554 CTAGTGACCGCCTCAGTACG 59.622 60.000 0.00 0.00 34.16 3.67
580 581 1.671845 CTCTAGTGACCGCCTCAGTAC 59.328 57.143 0.00 0.00 34.16 2.73
581 582 1.558294 TCTCTAGTGACCGCCTCAGTA 59.442 52.381 0.00 0.00 34.16 2.74
582 583 0.328592 TCTCTAGTGACCGCCTCAGT 59.671 55.000 0.00 0.00 36.45 3.41
583 584 1.021202 CTCTCTAGTGACCGCCTCAG 58.979 60.000 0.00 0.00 0.00 3.35
585 586 0.394625 ACCTCTCTAGTGACCGCCTC 60.395 60.000 0.00 0.00 0.00 4.70
586 587 0.039911 AACCTCTCTAGTGACCGCCT 59.960 55.000 0.00 0.00 0.00 5.52
587 588 0.173708 CAACCTCTCTAGTGACCGCC 59.826 60.000 0.00 0.00 0.00 6.13
588 589 0.458716 GCAACCTCTCTAGTGACCGC 60.459 60.000 0.00 0.00 0.00 5.68
589 590 1.178276 AGCAACCTCTCTAGTGACCG 58.822 55.000 0.00 0.00 0.00 4.79
590 591 2.354203 CCAAGCAACCTCTCTAGTGACC 60.354 54.545 0.00 0.00 0.00 4.02
591 592 2.933056 GCCAAGCAACCTCTCTAGTGAC 60.933 54.545 0.00 0.00 0.00 3.67
592 593 1.276421 GCCAAGCAACCTCTCTAGTGA 59.724 52.381 0.00 0.00 0.00 3.41
593 594 1.731720 GCCAAGCAACCTCTCTAGTG 58.268 55.000 0.00 0.00 0.00 2.74
594 595 0.247736 CGCCAAGCAACCTCTCTAGT 59.752 55.000 0.00 0.00 0.00 2.57
595 596 0.460987 CCGCCAAGCAACCTCTCTAG 60.461 60.000 0.00 0.00 0.00 2.43
596 597 1.192146 ACCGCCAAGCAACCTCTCTA 61.192 55.000 0.00 0.00 0.00 2.43
597 598 2.348998 CCGCCAAGCAACCTCTCT 59.651 61.111 0.00 0.00 0.00 3.10
600 601 2.281484 TCACCGCCAAGCAACCTC 60.281 61.111 0.00 0.00 0.00 3.85
601 602 2.281761 CTCACCGCCAAGCAACCT 60.282 61.111 0.00 0.00 0.00 3.50
602 603 4.043200 GCTCACCGCCAAGCAACC 62.043 66.667 0.00 0.00 38.42 3.77
603 604 3.286751 TGCTCACCGCCAAGCAAC 61.287 61.111 1.91 0.00 45.09 4.17
606 607 0.744414 TTAGATGCTCACCGCCAAGC 60.744 55.000 0.00 0.00 38.05 4.01
608 609 1.277842 TCTTTAGATGCTCACCGCCAA 59.722 47.619 0.00 0.00 38.05 4.52
610 611 1.576356 CTCTTTAGATGCTCACCGCC 58.424 55.000 0.00 0.00 38.05 6.13
612 613 1.134699 TGGCTCTTTAGATGCTCACCG 60.135 52.381 0.00 0.00 0.00 4.94
613 614 2.698855 TGGCTCTTTAGATGCTCACC 57.301 50.000 0.00 0.00 0.00 4.02
614 615 3.801698 TCATGGCTCTTTAGATGCTCAC 58.198 45.455 0.00 0.00 0.00 3.51
615 616 3.743584 GCTCATGGCTCTTTAGATGCTCA 60.744 47.826 0.00 0.00 38.06 4.26
616 617 2.807392 GCTCATGGCTCTTTAGATGCTC 59.193 50.000 0.00 0.00 38.06 4.26
617 618 2.486907 GGCTCATGGCTCTTTAGATGCT 60.487 50.000 6.20 0.00 41.46 3.79
618 619 1.878734 GGCTCATGGCTCTTTAGATGC 59.121 52.381 6.20 0.00 41.46 3.91
619 620 2.502295 GGGCTCATGGCTCTTTAGATG 58.498 52.381 6.20 0.00 38.65 2.90
620 621 1.423161 GGGGCTCATGGCTCTTTAGAT 59.577 52.381 6.09 0.00 42.10 1.98
621 622 0.839946 GGGGCTCATGGCTCTTTAGA 59.160 55.000 6.09 0.00 42.10 2.10
622 623 0.179006 GGGGGCTCATGGCTCTTTAG 60.179 60.000 6.09 0.00 42.10 1.85
623 624 0.918799 TGGGGGCTCATGGCTCTTTA 60.919 55.000 6.09 0.00 42.10 1.85
624 625 1.803453 TTGGGGGCTCATGGCTCTTT 61.803 55.000 6.09 0.00 42.10 2.52
626 627 1.803453 TTTTGGGGGCTCATGGCTCT 61.803 55.000 6.09 0.00 42.10 4.09
627 628 1.305213 TTTTGGGGGCTCATGGCTC 60.305 57.895 6.20 2.29 41.61 4.70
628 629 1.610379 GTTTTGGGGGCTCATGGCT 60.610 57.895 6.20 0.00 41.46 4.75
629 630 2.981302 GTTTTGGGGGCTCATGGC 59.019 61.111 0.00 0.00 40.90 4.40
630 631 2.350458 CCGTTTTGGGGGCTCATGG 61.350 63.158 0.00 0.00 0.00 3.66
631 632 0.322997 TACCGTTTTGGGGGCTCATG 60.323 55.000 0.00 0.00 44.64 3.07
632 633 0.034477 CTACCGTTTTGGGGGCTCAT 60.034 55.000 0.00 0.00 44.64 2.90
633 634 1.128809 TCTACCGTTTTGGGGGCTCA 61.129 55.000 0.00 0.00 44.64 4.26
634 635 0.255033 ATCTACCGTTTTGGGGGCTC 59.745 55.000 0.00 0.00 44.64 4.70
635 636 1.211212 GTATCTACCGTTTTGGGGGCT 59.789 52.381 0.00 0.00 44.64 5.19
637 638 1.481772 TCGTATCTACCGTTTTGGGGG 59.518 52.381 0.00 0.00 44.64 5.40
638 639 2.965572 TCGTATCTACCGTTTTGGGG 57.034 50.000 0.00 0.00 44.64 4.96
639 640 3.800506 GTGATCGTATCTACCGTTTTGGG 59.199 47.826 0.00 0.00 44.64 4.12
640 641 4.679662 AGTGATCGTATCTACCGTTTTGG 58.320 43.478 0.00 0.00 46.41 3.28
641 642 5.337554 TGAGTGATCGTATCTACCGTTTTG 58.662 41.667 0.00 0.00 0.00 2.44
642 643 5.571784 TGAGTGATCGTATCTACCGTTTT 57.428 39.130 0.00 0.00 0.00 2.43
643 644 5.520632 CATGAGTGATCGTATCTACCGTTT 58.479 41.667 0.00 0.00 0.00 3.60
644 645 4.556898 GCATGAGTGATCGTATCTACCGTT 60.557 45.833 0.00 0.00 0.00 4.44
646 647 3.493272 GCATGAGTGATCGTATCTACCG 58.507 50.000 0.00 0.00 0.00 4.02
647 648 3.493272 CGCATGAGTGATCGTATCTACC 58.507 50.000 0.00 0.00 0.00 3.18
648 649 3.188667 TCCGCATGAGTGATCGTATCTAC 59.811 47.826 0.00 0.00 0.00 2.59
649 650 3.188667 GTCCGCATGAGTGATCGTATCTA 59.811 47.826 0.00 0.00 0.00 1.98
650 651 2.030717 GTCCGCATGAGTGATCGTATCT 60.031 50.000 0.00 0.00 0.00 1.98
651 652 2.030717 AGTCCGCATGAGTGATCGTATC 60.031 50.000 0.00 0.00 0.00 2.24
652 653 1.957177 AGTCCGCATGAGTGATCGTAT 59.043 47.619 0.00 0.00 0.00 3.06
653 654 1.065551 CAGTCCGCATGAGTGATCGTA 59.934 52.381 0.00 0.00 45.72 3.43
654 655 0.179127 CAGTCCGCATGAGTGATCGT 60.179 55.000 0.00 0.00 45.72 3.73
655 656 1.485838 GCAGTCCGCATGAGTGATCG 61.486 60.000 11.26 0.00 45.72 3.69
656 657 1.156645 GGCAGTCCGCATGAGTGATC 61.157 60.000 11.26 0.00 45.72 2.92
657 658 1.153289 GGCAGTCCGCATGAGTGAT 60.153 57.895 11.26 0.00 45.72 3.06
658 659 2.265739 GGCAGTCCGCATGAGTGA 59.734 61.111 11.26 0.00 45.72 3.41
668 669 0.739561 AATCTAGACGTCGGCAGTCC 59.260 55.000 10.46 0.00 39.31 3.85
669 670 1.534175 CCAATCTAGACGTCGGCAGTC 60.534 57.143 10.46 4.22 38.81 3.51
670 671 0.456221 CCAATCTAGACGTCGGCAGT 59.544 55.000 10.46 0.00 0.00 4.40
673 674 1.591863 GGCCAATCTAGACGTCGGC 60.592 63.158 18.26 18.26 38.85 5.54
674 675 0.460311 AAGGCCAATCTAGACGTCGG 59.540 55.000 10.46 7.56 0.00 4.79
677 678 0.460284 CGCAAGGCCAATCTAGACGT 60.460 55.000 5.01 0.00 0.00 4.34
678 679 0.179111 TCGCAAGGCCAATCTAGACG 60.179 55.000 5.01 0.00 38.47 4.18
679 680 1.869767 CATCGCAAGGCCAATCTAGAC 59.130 52.381 5.01 0.00 38.47 2.59
682 683 1.209261 TGTCATCGCAAGGCCAATCTA 59.791 47.619 5.01 0.00 38.47 1.98
683 684 0.035152 TGTCATCGCAAGGCCAATCT 60.035 50.000 5.01 0.00 38.47 2.40
684 685 0.099436 GTGTCATCGCAAGGCCAATC 59.901 55.000 5.01 0.00 38.47 2.67
686 687 0.821301 TTGTGTCATCGCAAGGCCAA 60.821 50.000 5.01 0.00 38.84 4.52
687 688 1.228094 TTGTGTCATCGCAAGGCCA 60.228 52.632 5.01 0.00 38.84 5.36
688 689 3.667087 TTGTGTCATCGCAAGGCC 58.333 55.556 0.00 0.00 38.84 5.19
692 693 2.351641 GGCAATTCTTGTGTCATCGCAA 60.352 45.455 0.00 0.00 41.01 4.85
693 694 1.199789 GGCAATTCTTGTGTCATCGCA 59.800 47.619 0.00 0.00 0.00 5.10
696 697 3.444742 TCATGGGCAATTCTTGTGTCATC 59.555 43.478 0.00 0.00 0.00 2.92
697 698 3.433343 TCATGGGCAATTCTTGTGTCAT 58.567 40.909 0.00 0.00 0.00 3.06
698 699 2.821378 CTCATGGGCAATTCTTGTGTCA 59.179 45.455 0.00 0.00 0.00 3.58
701 702 1.134907 GGCTCATGGGCAATTCTTGTG 60.135 52.381 21.47 0.00 40.53 3.33
702 703 1.188863 GGCTCATGGGCAATTCTTGT 58.811 50.000 21.47 0.00 40.53 3.16
703 704 0.462789 GGGCTCATGGGCAATTCTTG 59.537 55.000 21.47 0.00 42.84 3.02
704 705 0.688749 GGGGCTCATGGGCAATTCTT 60.689 55.000 21.47 0.00 42.84 2.52
705 706 1.075748 GGGGCTCATGGGCAATTCT 60.076 57.895 21.47 0.00 42.84 2.40
707 708 2.041612 GGGGGCTCATGGGCAATT 60.042 61.111 21.47 0.00 42.84 2.32
708 709 2.474133 TTTGGGGGCTCATGGGCAAT 62.474 55.000 21.47 0.00 42.84 3.56
709 710 2.686246 TTTTGGGGGCTCATGGGCAA 62.686 55.000 21.47 1.19 42.84 4.52
710 711 3.171535 TTTTGGGGGCTCATGGGCA 62.172 57.895 21.47 0.00 42.84 5.36
711 712 2.284552 TTTTGGGGGCTCATGGGC 60.285 61.111 9.80 9.80 40.05 5.36
713 714 0.321346 GTTGTTTTGGGGGCTCATGG 59.679 55.000 0.00 0.00 0.00 3.66
714 715 1.341080 AGTTGTTTTGGGGGCTCATG 58.659 50.000 0.00 0.00 0.00 3.07
716 717 1.816183 CGTAGTTGTTTTGGGGGCTCA 60.816 52.381 0.00 0.00 0.00 4.26
717 718 0.879090 CGTAGTTGTTTTGGGGGCTC 59.121 55.000 0.00 0.00 0.00 4.70
718 719 0.475044 TCGTAGTTGTTTTGGGGGCT 59.525 50.000 0.00 0.00 0.00 5.19
720 721 2.486592 GACATCGTAGTTGTTTTGGGGG 59.513 50.000 0.00 0.00 0.00 5.40
722 723 3.061322 TCGACATCGTAGTTGTTTTGGG 58.939 45.455 0.54 0.00 40.80 4.12
723 724 4.387559 TGATCGACATCGTAGTTGTTTTGG 59.612 41.667 0.54 0.00 40.80 3.28
725 726 4.986034 TGTGATCGACATCGTAGTTGTTTT 59.014 37.500 0.54 0.00 40.80 2.43
727 728 3.918591 GTGTGATCGACATCGTAGTTGTT 59.081 43.478 0.54 0.00 40.80 2.83
728 729 3.057806 TGTGTGATCGACATCGTAGTTGT 60.058 43.478 0.54 0.00 40.80 3.32
729 730 3.498082 TGTGTGATCGACATCGTAGTTG 58.502 45.455 0.54 0.00 40.80 3.16
730 731 3.842732 TGTGTGATCGACATCGTAGTT 57.157 42.857 0.54 0.00 40.80 2.24
731 732 4.371855 AATGTGTGATCGACATCGTAGT 57.628 40.909 9.88 0.00 40.80 2.73
732 733 5.511571 AGTAATGTGTGATCGACATCGTAG 58.488 41.667 9.88 0.00 40.80 3.51
733 734 5.494632 AGTAATGTGTGATCGACATCGTA 57.505 39.130 9.88 0.00 40.80 3.43
734 735 4.371855 AGTAATGTGTGATCGACATCGT 57.628 40.909 9.88 0.53 40.80 3.73
736 737 7.987268 TTTCTAGTAATGTGTGATCGACATC 57.013 36.000 9.88 1.05 36.78 3.06
737 738 8.771920 TTTTTCTAGTAATGTGTGATCGACAT 57.228 30.769 4.69 4.69 36.78 3.06
738 739 8.771920 ATTTTTCTAGTAATGTGTGATCGACA 57.228 30.769 0.00 0.22 0.00 4.35
749 750 9.398170 CGCCCATGATTTATTTTTCTAGTAATG 57.602 33.333 0.00 0.00 0.00 1.90
750 751 8.576442 CCGCCCATGATTTATTTTTCTAGTAAT 58.424 33.333 0.00 0.00 0.00 1.89
752 753 7.012894 CACCGCCCATGATTTATTTTTCTAGTA 59.987 37.037 0.00 0.00 0.00 1.82
754 755 6.039270 TCACCGCCCATGATTTATTTTTCTAG 59.961 38.462 0.00 0.00 0.00 2.43
755 756 5.888724 TCACCGCCCATGATTTATTTTTCTA 59.111 36.000 0.00 0.00 0.00 2.10
756 757 4.709397 TCACCGCCCATGATTTATTTTTCT 59.291 37.500 0.00 0.00 0.00 2.52
758 759 5.600696 GATCACCGCCCATGATTTATTTTT 58.399 37.500 0.00 0.00 36.92 1.94
759 760 4.261572 CGATCACCGCCCATGATTTATTTT 60.262 41.667 0.00 0.00 36.92 1.82
760 761 3.253188 CGATCACCGCCCATGATTTATTT 59.747 43.478 0.00 0.00 36.92 1.40
762 763 2.038426 TCGATCACCGCCCATGATTTAT 59.962 45.455 0.00 0.00 36.92 1.40
763 764 1.414550 TCGATCACCGCCCATGATTTA 59.585 47.619 0.00 0.00 36.92 1.40
764 765 0.180171 TCGATCACCGCCCATGATTT 59.820 50.000 0.00 0.00 36.92 2.17
765 766 0.250038 CTCGATCACCGCCCATGATT 60.250 55.000 0.00 0.00 36.92 2.57
766 767 1.368950 CTCGATCACCGCCCATGAT 59.631 57.895 0.00 0.00 39.54 2.45
767 768 2.814604 CTCGATCACCGCCCATGA 59.185 61.111 0.00 0.00 38.37 3.07
768 769 2.087462 TAGCTCGATCACCGCCCATG 62.087 60.000 0.00 0.00 38.37 3.66
769 770 1.399744 TTAGCTCGATCACCGCCCAT 61.400 55.000 0.00 0.00 38.37 4.00
770 771 1.399744 ATTAGCTCGATCACCGCCCA 61.400 55.000 0.00 0.00 38.37 5.36
772 773 2.433868 TTATTAGCTCGATCACCGCC 57.566 50.000 0.00 0.00 38.37 6.13
773 774 3.184581 CCTTTTATTAGCTCGATCACCGC 59.815 47.826 0.00 0.00 38.37 5.68
774 775 4.369182 ACCTTTTATTAGCTCGATCACCG 58.631 43.478 0.00 0.00 40.25 4.94
776 777 4.085004 GCGACCTTTTATTAGCTCGATCAC 60.085 45.833 0.00 0.00 0.00 3.06
777 778 4.049186 GCGACCTTTTATTAGCTCGATCA 58.951 43.478 0.00 0.00 0.00 2.92
778 779 3.429207 GGCGACCTTTTATTAGCTCGATC 59.571 47.826 0.00 0.00 0.00 3.69
779 780 3.069729 AGGCGACCTTTTATTAGCTCGAT 59.930 43.478 0.00 0.00 0.00 3.59
780 781 2.429610 AGGCGACCTTTTATTAGCTCGA 59.570 45.455 0.00 0.00 0.00 4.04
782 783 3.793559 TGAGGCGACCTTTTATTAGCTC 58.206 45.455 0.00 0.00 31.76 4.09
783 784 3.906720 TGAGGCGACCTTTTATTAGCT 57.093 42.857 0.00 0.00 31.76 3.32
784 785 4.957759 TTTGAGGCGACCTTTTATTAGC 57.042 40.909 0.00 0.00 31.76 3.09
787 788 8.747538 ATATACTTTTGAGGCGACCTTTTATT 57.252 30.769 0.00 0.00 31.76 1.40
788 789 8.747538 AATATACTTTTGAGGCGACCTTTTAT 57.252 30.769 0.00 0.00 31.76 1.40
789 790 8.570068 AAATATACTTTTGAGGCGACCTTTTA 57.430 30.769 0.00 0.00 31.76 1.52
792 793 6.657541 TCAAAATATACTTTTGAGGCGACCTT 59.342 34.615 14.08 0.00 41.74 3.50
793 794 6.177610 TCAAAATATACTTTTGAGGCGACCT 58.822 36.000 14.08 0.00 41.74 3.85
794 795 6.431198 TCAAAATATACTTTTGAGGCGACC 57.569 37.500 14.08 0.00 41.74 4.79
822 823 9.132521 CGTGCATGATTTTATCTTTCTTTTTCT 57.867 29.630 0.00 0.00 0.00 2.52
823 824 7.894753 GCGTGCATGATTTTATCTTTCTTTTTC 59.105 33.333 10.93 0.00 0.00 2.29
824 825 7.384660 TGCGTGCATGATTTTATCTTTCTTTTT 59.615 29.630 10.93 0.00 0.00 1.94
825 826 6.867816 TGCGTGCATGATTTTATCTTTCTTTT 59.132 30.769 10.93 0.00 0.00 2.27
827 828 5.953183 TGCGTGCATGATTTTATCTTTCTT 58.047 33.333 10.93 0.00 0.00 2.52
829 830 5.572211 TCTGCGTGCATGATTTTATCTTTC 58.428 37.500 10.93 0.00 0.00 2.62
830 831 5.565592 TCTGCGTGCATGATTTTATCTTT 57.434 34.783 10.93 0.00 0.00 2.52
832 833 6.652062 TCATATCTGCGTGCATGATTTTATCT 59.348 34.615 10.93 0.00 0.00 1.98
834 835 6.205270 TGTCATATCTGCGTGCATGATTTTAT 59.795 34.615 10.93 0.00 30.63 1.40
836 837 4.336153 TGTCATATCTGCGTGCATGATTTT 59.664 37.500 10.93 0.00 30.63 1.82
837 838 3.878699 TGTCATATCTGCGTGCATGATTT 59.121 39.130 10.93 0.00 30.63 2.17
838 839 3.469739 TGTCATATCTGCGTGCATGATT 58.530 40.909 10.93 0.00 30.63 2.57
839 840 3.116079 TGTCATATCTGCGTGCATGAT 57.884 42.857 10.93 5.01 30.63 2.45
840 841 2.600470 TGTCATATCTGCGTGCATGA 57.400 45.000 10.93 0.00 0.00 3.07
842 843 4.261322 GGAATTTGTCATATCTGCGTGCAT 60.261 41.667 0.00 0.00 0.00 3.96
845 846 5.490139 AAGGAATTTGTCATATCTGCGTG 57.510 39.130 0.00 0.00 0.00 5.34
846 847 6.515272 AAAAGGAATTTGTCATATCTGCGT 57.485 33.333 0.00 0.00 0.00 5.24
847 848 6.237648 GCAAAAAGGAATTTGTCATATCTGCG 60.238 38.462 2.21 0.00 41.34 5.18
849 850 8.537049 TTGCAAAAAGGAATTTGTCATATCTG 57.463 30.769 0.00 0.00 41.34 2.90
850 851 7.820872 CCTTGCAAAAAGGAATTTGTCATATCT 59.179 33.333 0.00 0.00 41.34 1.98
851 852 7.603784 ACCTTGCAAAAAGGAATTTGTCATATC 59.396 33.333 9.96 0.00 41.34 1.63
854 855 5.683681 ACCTTGCAAAAAGGAATTTGTCAT 58.316 33.333 9.96 0.00 41.34 3.06
856 857 5.006649 GTGACCTTGCAAAAAGGAATTTGTC 59.993 40.000 9.96 0.00 41.34 3.18
857 858 4.875536 GTGACCTTGCAAAAAGGAATTTGT 59.124 37.500 9.96 0.00 41.34 2.83
858 859 4.025813 CGTGACCTTGCAAAAAGGAATTTG 60.026 41.667 9.96 0.00 42.01 2.32
859 860 4.119136 CGTGACCTTGCAAAAAGGAATTT 58.881 39.130 9.96 0.00 39.81 1.82
860 861 3.383185 TCGTGACCTTGCAAAAAGGAATT 59.617 39.130 9.96 0.00 39.81 2.17
861 862 2.955660 TCGTGACCTTGCAAAAAGGAAT 59.044 40.909 9.96 0.00 39.81 3.01
862 863 2.357637 CTCGTGACCTTGCAAAAAGGAA 59.642 45.455 9.96 0.00 39.81 3.36
863 864 1.946768 CTCGTGACCTTGCAAAAAGGA 59.053 47.619 9.96 2.04 39.81 3.36
864 865 1.001378 CCTCGTGACCTTGCAAAAAGG 60.001 52.381 0.00 0.00 43.05 3.11
867 868 1.452145 GGCCTCGTGACCTTGCAAAA 61.452 55.000 0.00 0.00 0.00 2.44
868 869 1.896660 GGCCTCGTGACCTTGCAAA 60.897 57.895 0.00 0.00 0.00 3.68
869 870 2.281484 GGCCTCGTGACCTTGCAA 60.281 61.111 0.00 0.00 0.00 4.08
872 873 1.841663 CGTTTGGCCTCGTGACCTTG 61.842 60.000 3.32 0.00 0.00 3.61
875 876 1.161563 TTTCGTTTGGCCTCGTGACC 61.162 55.000 3.32 0.00 0.00 4.02
877 878 0.941542 CTTTTCGTTTGGCCTCGTGA 59.058 50.000 3.32 0.00 0.00 4.35
879 880 1.652563 GCTTTTCGTTTGGCCTCGT 59.347 52.632 3.32 0.00 0.00 4.18
880 881 1.081442 GGCTTTTCGTTTGGCCTCG 60.081 57.895 3.32 6.77 41.20 4.63
886 887 6.200665 TGAAAATGATCAAGGCTTTTCGTTTG 59.799 34.615 19.88 1.76 39.37 2.93
887 888 6.279882 TGAAAATGATCAAGGCTTTTCGTTT 58.720 32.000 19.71 16.06 39.37 3.60
888 889 5.841810 TGAAAATGATCAAGGCTTTTCGTT 58.158 33.333 19.71 2.81 39.37 3.85
889 890 5.452078 TGAAAATGATCAAGGCTTTTCGT 57.548 34.783 19.71 0.00 39.37 3.85
890 891 5.164158 CGTTGAAAATGATCAAGGCTTTTCG 60.164 40.000 19.71 10.48 39.84 3.46
891 892 5.119125 CCGTTGAAAATGATCAAGGCTTTTC 59.881 40.000 18.86 18.86 41.50 2.29
892 893 4.990426 CCGTTGAAAATGATCAAGGCTTTT 59.010 37.500 0.00 1.59 41.50 2.27
894 895 3.826157 TCCGTTGAAAATGATCAAGGCTT 59.174 39.130 0.00 0.00 41.50 4.35
895 896 3.420893 TCCGTTGAAAATGATCAAGGCT 58.579 40.909 0.00 0.00 41.50 4.58
897 898 5.355071 TCTCATCCGTTGAAAATGATCAAGG 59.645 40.000 0.00 6.50 39.84 3.61
898 899 6.426980 TCTCATCCGTTGAAAATGATCAAG 57.573 37.500 0.00 0.00 39.84 3.02
904 905 5.032863 GCTTCATCTCATCCGTTGAAAATG 58.967 41.667 0.00 0.00 32.78 2.32
907 908 3.009723 GGCTTCATCTCATCCGTTGAAA 58.990 45.455 0.00 0.00 32.78 2.69
933 934 4.833380 CGGAGATATGGGGAAGAAGAAGTA 59.167 45.833 0.00 0.00 0.00 2.24
934 935 3.643792 CGGAGATATGGGGAAGAAGAAGT 59.356 47.826 0.00 0.00 0.00 3.01
968 969 6.075315 TGTTGCCCTGCTCTCTATAACTATA 58.925 40.000 0.00 0.00 0.00 1.31
969 970 4.901849 TGTTGCCCTGCTCTCTATAACTAT 59.098 41.667 0.00 0.00 0.00 2.12
970 971 4.286707 TGTTGCCCTGCTCTCTATAACTA 58.713 43.478 0.00 0.00 0.00 2.24
971 972 3.107601 TGTTGCCCTGCTCTCTATAACT 58.892 45.455 0.00 0.00 0.00 2.24
972 973 3.543680 TGTTGCCCTGCTCTCTATAAC 57.456 47.619 0.00 0.00 0.00 1.89
973 974 3.263170 TGTTGTTGCCCTGCTCTCTATAA 59.737 43.478 0.00 0.00 0.00 0.98
990 991 7.312415 AGTAGGGAGTAGTATGTTTTGTTGT 57.688 36.000 0.00 0.00 0.00 3.32
996 999 5.503927 TGACGAGTAGGGAGTAGTATGTTT 58.496 41.667 0.00 0.00 0.00 2.83
1008 1011 0.394488 TGGAGCTCTGACGAGTAGGG 60.394 60.000 14.64 0.00 39.53 3.53
1311 1328 0.596082 GAGCTAGACTGATCTCCCGC 59.404 60.000 0.00 0.00 36.29 6.13
1333 1350 2.394563 GGGCGAGCAAAGAGAGCAC 61.395 63.158 0.00 0.00 0.00 4.40
1336 1353 1.518133 CGAGGGCGAGCAAAGAGAG 60.518 63.158 0.00 0.00 40.82 3.20
1370 1387 4.513680 CCCTTCCACCCCATAGAGATCTAT 60.514 50.000 0.00 0.00 39.61 1.98
1379 1396 1.344701 GGAGTACCCTTCCACCCCATA 60.345 57.143 0.00 0.00 34.74 2.74
1385 1402 1.913419 TGGATTGGAGTACCCTTCCAC 59.087 52.381 15.24 3.18 44.13 4.02
1390 1407 1.080498 TGGACTGGATTGGAGTACCCT 59.920 52.381 0.00 0.00 35.38 4.34
1412 1429 2.041701 GATGGATTTGATTGGGGTGGG 58.958 52.381 0.00 0.00 0.00 4.61
1448 1465 4.641645 TGGTGCTTCCACAGGCCG 62.642 66.667 0.00 0.00 43.88 6.13
1484 1506 4.717280 CCCAAGTAAAGTATCCTCTGGAGT 59.283 45.833 0.00 0.00 34.05 3.85
1526 1548 1.471119 TCCTAGACCTACGGCACAAG 58.529 55.000 0.00 0.00 0.00 3.16
1529 1551 3.484407 TCTTATCCTAGACCTACGGCAC 58.516 50.000 0.00 0.00 0.00 5.01
1583 1605 1.074951 CTTTTCCCCGGAGCAAGGT 59.925 57.895 0.73 0.00 0.00 3.50
1584 1606 1.678970 CCTTTTCCCCGGAGCAAGG 60.679 63.158 0.73 5.08 33.18 3.61
1585 1607 1.678970 CCCTTTTCCCCGGAGCAAG 60.679 63.158 0.73 0.00 0.00 4.01
1586 1608 2.438795 CCCTTTTCCCCGGAGCAA 59.561 61.111 0.73 0.00 0.00 3.91
1587 1609 3.657350 CCCCTTTTCCCCGGAGCA 61.657 66.667 0.73 0.00 0.00 4.26
1588 1610 4.442454 CCCCCTTTTCCCCGGAGC 62.442 72.222 0.73 0.00 0.00 4.70
1589 1611 4.442454 GCCCCCTTTTCCCCGGAG 62.442 72.222 0.73 0.00 0.00 4.63
1661 1689 1.802069 AAGAAAAGACAGAGCCGAGC 58.198 50.000 0.00 0.00 0.00 5.03
1662 1690 6.402658 GGAAATAAAGAAAAGACAGAGCCGAG 60.403 42.308 0.00 0.00 0.00 4.63
1664 1692 5.412904 AGGAAATAAAGAAAAGACAGAGCCG 59.587 40.000 0.00 0.00 0.00 5.52
1687 1715 1.261238 AAAGAGGGCCTGTCCGAGAG 61.261 60.000 12.95 0.00 34.94 3.20
1688 1716 0.836400 AAAAGAGGGCCTGTCCGAGA 60.836 55.000 12.95 0.00 34.94 4.04
1689 1717 0.036875 AAAAAGAGGGCCTGTCCGAG 59.963 55.000 12.95 0.00 34.94 4.63
1706 1734 3.096092 CCCCCTTCCATTCGAATGAAAA 58.904 45.455 34.21 25.39 38.70 2.29
1707 1735 2.733956 CCCCCTTCCATTCGAATGAAA 58.266 47.619 34.21 22.90 38.70 2.69
1708 1736 1.684869 GCCCCCTTCCATTCGAATGAA 60.685 52.381 34.21 24.19 38.70 2.57
1712 1740 1.217916 TATGCCCCCTTCCATTCGAA 58.782 50.000 0.00 0.00 0.00 3.71
1714 1742 1.202927 ACATATGCCCCCTTCCATTCG 60.203 52.381 1.58 0.00 0.00 3.34
1716 1744 3.063650 ACTACATATGCCCCCTTCCATT 58.936 45.455 1.58 0.00 0.00 3.16
1717 1745 2.718456 ACTACATATGCCCCCTTCCAT 58.282 47.619 1.58 0.00 0.00 3.41
1718 1746 2.206322 ACTACATATGCCCCCTTCCA 57.794 50.000 1.58 0.00 0.00 3.53
1803 1832 4.968626 TCTTATGTTAACATGCACGCTTG 58.031 39.130 27.62 10.56 37.15 4.01
1804 1833 5.621197 TTCTTATGTTAACATGCACGCTT 57.379 34.783 27.62 5.42 37.15 4.68
1822 1851 7.518370 CGCCGCTAGTTACAAAATATCATTCTT 60.518 37.037 0.00 0.00 0.00 2.52
1829 1858 2.546789 GGCGCCGCTAGTTACAAAATAT 59.453 45.455 12.58 0.00 0.00 1.28
1851 1880 3.000080 GCAACGCCGTCAGTCGAAG 62.000 63.158 0.00 0.00 42.86 3.79
1883 1924 4.558898 GCTAGAATCCACGATTGTACGGAT 60.559 45.833 0.00 0.00 40.01 4.18
1889 1930 2.165641 TCACGCTAGAATCCACGATTGT 59.834 45.455 0.00 0.00 31.89 2.71
1953 1994 1.759459 GCTATTAGCTGAGGCGGGGT 61.759 60.000 8.47 0.00 44.37 4.95
1960 2001 2.799412 CGAAGCTTGGCTATTAGCTGAG 59.201 50.000 15.02 13.17 46.53 3.35
2092 2133 0.039618 TTTCATGGTCCTTGAGGCCC 59.960 55.000 0.00 0.00 32.79 5.80
2263 2312 7.781324 TCAGTAGATAGCAATGACATATCCA 57.219 36.000 0.00 0.00 0.00 3.41
2264 2313 9.964303 CTATCAGTAGATAGCAATGACATATCC 57.036 37.037 0.09 0.00 45.16 2.59
2344 2479 8.450578 TTTCCCATCATCATACTCATGTAAAC 57.549 34.615 0.00 0.00 33.57 2.01
2709 2858 7.595819 ATCAACCAAATACCACAAAAGAAGA 57.404 32.000 0.00 0.00 0.00 2.87
2790 2940 5.962433 TGACATAGCACTACCACTTTCTAC 58.038 41.667 0.00 0.00 0.00 2.59
2812 2962 2.129607 GTTTGCACACTGAATTGCCTG 58.870 47.619 0.00 0.00 38.00 4.85
2858 3008 5.817296 TGTGTTACAAGATCAGGATATGCAC 59.183 40.000 0.00 0.00 0.00 4.57
2921 3071 2.169352 GCAGTCTGGAAGCTCATAAGGA 59.831 50.000 1.14 0.00 0.00 3.36
2922 3072 2.559440 GCAGTCTGGAAGCTCATAAGG 58.441 52.381 1.14 0.00 0.00 2.69
3082 3237 5.490139 ACACAGACACTTTCTTGACATTG 57.510 39.130 0.00 0.00 28.96 2.82
3295 3460 6.869913 TGAAAATACCCAGTACAGAACTTACG 59.130 38.462 0.00 0.00 35.76 3.18
3395 3561 6.991938 TGCAGCAATAATAAGTCCAAAAGTT 58.008 32.000 0.00 0.00 0.00 2.66
3399 3565 5.709631 TGACTGCAGCAATAATAAGTCCAAA 59.290 36.000 15.27 0.00 34.49 3.28
3484 3719 3.780902 CAAACCCTGAAGAAACACCAAC 58.219 45.455 0.00 0.00 0.00 3.77
3798 4605 8.549548 CAGCAGTCTCTTGATTTGATATTACAG 58.450 37.037 0.00 0.00 0.00 2.74
3877 4684 6.200475 CCATGATCATAGCATAATCTAGTGCG 59.800 42.308 8.15 0.00 45.69 5.34
3902 4709 8.732746 ATTCTCTTGGTGGTAAACATGTATAC 57.267 34.615 0.00 0.00 0.00 1.47
3911 4718 7.388437 ACGTAATGTATTCTCTTGGTGGTAAA 58.612 34.615 0.00 0.00 0.00 2.01
3967 4775 4.613394 CGGTACATACGGAAACCCAAAAAC 60.613 45.833 0.00 0.00 0.00 2.43
3990 4799 5.925969 CACTTGAACATATTTCCCAACCAAC 59.074 40.000 0.00 0.00 0.00 3.77
4058 4877 3.054878 GGCAAACAATTTCAGTGCAGAG 58.945 45.455 0.00 0.00 36.93 3.35
4223 5069 8.358895 TGCAATTGATACTTGAAGATTTGACAA 58.641 29.630 10.34 0.00 0.00 3.18
4363 5210 1.154150 GCAACACAGATGAAGCGGC 60.154 57.895 0.00 0.00 0.00 6.53
4741 5589 2.362503 TCCTCGTCCATGGCGACT 60.363 61.111 22.05 0.00 34.47 4.18
4742 5590 2.105128 CTCCTCGTCCATGGCGAC 59.895 66.667 22.05 9.86 34.47 5.19
4760 5608 4.080919 CCATTGAACTATCACCTGACTGGA 60.081 45.833 5.22 0.00 39.71 3.86
4848 5696 5.357257 TCTTTATTTATCTCACAGGCGTCC 58.643 41.667 0.00 0.00 0.00 4.79
4931 5779 1.278985 CAGATGACAGTAAGGTGGGCA 59.721 52.381 0.00 0.00 0.00 5.36
4937 5785 3.493350 CGATTCCCCAGATGACAGTAAGG 60.493 52.174 0.00 0.00 0.00 2.69
4959 5808 3.858238 GGTTACGACTTACATCAGCAGAC 59.142 47.826 0.00 0.00 0.00 3.51
4967 5816 3.665745 ACCAACGGTTACGACTTACAT 57.334 42.857 0.00 0.00 44.60 2.29
4998 5848 3.077359 AGCACAAAGATACAGACTTGCC 58.923 45.455 0.00 0.00 0.00 4.52
5138 5996 7.310113 TTTCACAGGAAACACTTGGTAACAAAT 60.310 33.333 0.00 0.00 46.44 2.32
5145 6003 3.636764 GGATTTCACAGGAAACACTTGGT 59.363 43.478 0.00 0.00 45.22 3.67
5147 6005 4.916983 TGGATTTCACAGGAAACACTTG 57.083 40.909 0.00 0.00 45.22 3.16
5148 6006 4.262164 GCATGGATTTCACAGGAAACACTT 60.262 41.667 0.00 0.00 45.22 3.16
5167 6025 2.357009 GCCTCCTGAAATGTACTGCATG 59.643 50.000 0.00 0.00 37.96 4.06
5169 6027 1.350684 TGCCTCCTGAAATGTACTGCA 59.649 47.619 0.00 0.00 0.00 4.41
5198 6056 5.336372 CGACTCCAAAATCCCTGCAAAAATA 60.336 40.000 0.00 0.00 0.00 1.40
5214 6333 3.713826 ATAGAAAAAGCCCGACTCCAA 57.286 42.857 0.00 0.00 0.00 3.53
5222 6341 5.476945 TGACTCCAGAAAATAGAAAAAGCCC 59.523 40.000 0.00 0.00 0.00 5.19
5367 6486 9.533831 TGGATGTATCTAGCATTGAGTATAAGA 57.466 33.333 0.00 0.00 0.00 2.10
5377 6496 7.118390 GTCGCTTAAATGGATGTATCTAGCATT 59.882 37.037 0.00 0.00 0.00 3.56
5378 6497 6.591834 GTCGCTTAAATGGATGTATCTAGCAT 59.408 38.462 0.00 0.00 0.00 3.79
5380 6499 5.926542 TGTCGCTTAAATGGATGTATCTAGC 59.073 40.000 0.00 0.00 0.00 3.42
5391 6510 4.173256 GGAATTGGTTGTCGCTTAAATGG 58.827 43.478 0.00 0.00 0.00 3.16
5396 6515 3.071479 GTCTGGAATTGGTTGTCGCTTA 58.929 45.455 0.00 0.00 0.00 3.09
5397 6516 1.880027 GTCTGGAATTGGTTGTCGCTT 59.120 47.619 0.00 0.00 0.00 4.68
5406 6525 1.279271 ACTTCCTCCGTCTGGAATTGG 59.721 52.381 0.00 0.00 45.87 3.16
5407 6526 2.770164 ACTTCCTCCGTCTGGAATTG 57.230 50.000 0.00 0.00 45.87 2.32
5413 6532 4.188247 TGATTTGTACTTCCTCCGTCTG 57.812 45.455 0.00 0.00 0.00 3.51
5414 6533 4.884668 TTGATTTGTACTTCCTCCGTCT 57.115 40.909 0.00 0.00 0.00 4.18
5433 6556 7.579589 TTCTTCAGTGTTTGTTTGTCATTTG 57.420 32.000 0.00 0.00 0.00 2.32
5437 6560 6.507958 TCATTCTTCAGTGTTTGTTTGTCA 57.492 33.333 0.00 0.00 0.00 3.58
5439 6562 6.686630 TGTTCATTCTTCAGTGTTTGTTTGT 58.313 32.000 0.00 0.00 0.00 2.83
5458 6581 4.396478 TCGGTTGAGAAACATTGTTGTTCA 59.604 37.500 2.13 7.37 45.30 3.18
5459 6582 4.915704 TCGGTTGAGAAACATTGTTGTTC 58.084 39.130 2.13 4.91 45.30 3.18
5502 6625 5.614308 TCTTTCAGATCTCAACTGCAAGAA 58.386 37.500 0.00 0.00 41.64 2.52
5556 6680 0.400213 TCAATGCGTCAGGGGAAACT 59.600 50.000 0.00 0.00 0.00 2.66
5590 6717 2.485814 GCAACACCTCTTCATCTTGGAC 59.514 50.000 0.00 0.00 0.00 4.02
5595 6722 3.777106 TGAAGCAACACCTCTTCATCT 57.223 42.857 1.03 0.00 42.43 2.90
5634 6761 8.244802 GCGTATCTCCATGTATTAATACAGACT 58.755 37.037 27.40 12.92 45.46 3.24
5635 6762 7.488471 GGCGTATCTCCATGTATTAATACAGAC 59.512 40.741 27.40 13.14 45.46 3.51
5658 6785 0.813184 AGGTGCTCATTTTCATGGCG 59.187 50.000 0.00 0.00 32.24 5.69
5659 6786 3.633525 TGATAGGTGCTCATTTTCATGGC 59.366 43.478 0.00 0.00 0.00 4.40
5660 6787 7.610692 AGATATGATAGGTGCTCATTTTCATGG 59.389 37.037 0.00 0.00 35.12 3.66
5661 6788 8.451748 CAGATATGATAGGTGCTCATTTTCATG 58.548 37.037 8.10 0.00 35.12 3.07
5662 6789 8.162085 ACAGATATGATAGGTGCTCATTTTCAT 58.838 33.333 0.00 4.67 35.12 2.57
5771 6902 7.792374 ATGCAGTATACAGTTTGAACATAGG 57.208 36.000 5.50 0.00 0.00 2.57
5838 6971 9.740239 ATAAGGATTTCGAAATGATCAATGTTG 57.260 29.630 27.27 0.00 0.00 3.33
5885 7018 8.941995 ATCTCCTGATATTAGTGCTAGTTGTA 57.058 34.615 0.00 0.00 0.00 2.41
5893 7026 6.426328 CACTTTGGATCTCCTGATATTAGTGC 59.574 42.308 0.00 0.00 36.82 4.40
5894 7027 7.730084 TCACTTTGGATCTCCTGATATTAGTG 58.270 38.462 0.00 0.00 36.82 2.74
5895 7028 7.472663 GCTCACTTTGGATCTCCTGATATTAGT 60.473 40.741 0.00 0.00 36.82 2.24
5896 7029 6.873076 GCTCACTTTGGATCTCCTGATATTAG 59.127 42.308 0.00 0.00 36.82 1.73
5898 7031 5.131642 TGCTCACTTTGGATCTCCTGATATT 59.868 40.000 0.00 0.00 36.82 1.28
5900 7033 4.033009 TGCTCACTTTGGATCTCCTGATA 58.967 43.478 0.00 0.00 36.82 2.15
5901 7034 2.842496 TGCTCACTTTGGATCTCCTGAT 59.158 45.455 0.00 0.00 36.82 2.90
5902 7035 2.259917 TGCTCACTTTGGATCTCCTGA 58.740 47.619 0.00 0.00 36.82 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.