AutoCloner

Multiple sequence alignment - TraesCS7A01G029900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G029900	chr7A	100.000	6025	0	0	1	6025	12175373	12181397	0.000000e+00	11127.0
1	TraesCS7A01G029900	chr7A	98.218	505	9	0	1	505	12131140	12131644	0.000000e+00	883.0
2	TraesCS7A01G029900	chr7A	96.875	32	1	0	5376	5407	659654643	659654674	3.000000e-03	54.7
3	TraesCS7A01G029900	chr4A	91.507	2920	154	45	2267	5135	725663213	725660337	0.000000e+00	3932.0
4	TraesCS7A01G029900	chr4A	84.798	1434	142	34	4592	6014	725590353	725588985	0.000000e+00	1371.0
5	TraesCS7A01G029900	chr4A	98.214	504	9	0	1	504	636749568	636750071	0.000000e+00	881.0
6	TraesCS7A01G029900	chr4A	97.817	504	11	0	1	504	636756552	636757055	0.000000e+00	870.0
7	TraesCS7A01G029900	chr4A	87.664	762	61	13	900	1650	725664626	725663887	0.000000e+00	856.0
8	TraesCS7A01G029900	chr4A	92.832	558	27	6	1719	2263	725663855	725663298	0.000000e+00	797.0
9	TraesCS7A01G029900	chr4A	89.209	556	46	6	5441	5988	725659853	725659304	0.000000e+00	682.0
10	TraesCS7A01G029900	chr4A	90.323	124	8	4	5216	5338	725659993	725659873	6.250000e-35	159.0
11	TraesCS7A01G029900	chr4A	100.000	44	0	0	1677	1720	432428179	432428222	1.390000e-11	82.4
12	TraesCS7A01G029900	chr4A	100.000	44	0	0	1677	1720	552087285	552087328	1.390000e-11	82.4
13	TraesCS7A01G029900	chr7D	90.751	1957	141	15	4039	5989	12469810	12471732	0.000000e+00	2575.0
14	TraesCS7A01G029900	chr7D	92.431	1691	94	11	2267	3938	12468096	12469771	0.000000e+00	2383.0
15	TraesCS7A01G029900	chr7D	91.956	547	29	7	1719	2252	12467462	12468006	0.000000e+00	752.0
16	TraesCS7A01G029900	chr7D	83.946	735	73	21	910	1632	12466723	12467424	0.000000e+00	662.0
17	TraesCS7A01G029900	chr6A	98.016	504	9	1	1	504	513965727	513966229	0.000000e+00	874.0
18	TraesCS7A01G029900	chr6A	98.012	503	9	1	1	503	597641832	597642333	0.000000e+00	872.0
19	TraesCS7A01G029900	chr6A	97.817	504	9	2	1	504	298519512	298520013	0.000000e+00	869.0
20	TraesCS7A01G029900	chr6A	100.000	44	0	0	1677	1720	338456256	338456299	1.390000e-11	82.4
21	TraesCS7A01G029900	chr5A	98.016	504	9	1	1	504	26906810	26906308	0.000000e+00	874.0
22	TraesCS7A01G029900	chr5A	97.817	504	10	1	1	504	674036577	674037079	0.000000e+00	869.0
23	TraesCS7A01G029900	chr5A	90.000	50	5	0	5961	6010	537109590	537109639	1.400000e-06	65.8
24	TraesCS7A01G029900	chr7B	97.817	504	10	1	1	504	511061	511563	0.000000e+00	869.0
25	TraesCS7A01G029900	chr1B	85.606	264	31	6	1988	2248	536409010	536409269	2.770000e-68	270.0
26	TraesCS7A01G029900	chr1B	80.692	347	47	15	2246	2584	629882826	629883160	1.000000e-62	252.0
27	TraesCS7A01G029900	chr1B	81.311	305	54	3	1959	2262	536410815	536411117	1.680000e-60	244.0
28	TraesCS7A01G029900	chr1B	83.462	260	41	2	1999	2257	536407176	536407434	2.170000e-59	241.0
29	TraesCS7A01G029900	chr1B	91.818	110	8	1	2106	2215	629882615	629882723	1.050000e-32	152.0
30	TraesCS7A01G029900	chr1B	85.567	97	13	1	5669	5765	617284048	617284143	3.840000e-17	100.0
31	TraesCS7A01G029900	chr3B	81.402	328	41	14	2267	2586	469784684	469784999	3.610000e-62	250.0
32	TraesCS7A01G029900	chr3B	95.312	64	3	0	2143	2206	469784490	469784553	1.070000e-17	102.0
33	TraesCS7A01G029900	chr6B	74.855	688	104	37	2267	2942	709013146	709013776	1.300000e-61	248.0
34	TraesCS7A01G029900	chr6D	84.884	172	16	6	3535	3700	465034040	465033873	1.340000e-36	165.0
35	TraesCS7A01G029900	chr6D	96.875	32	1	0	5380	5411	233159431	233159400	3.000000e-03	54.7
36	TraesCS7A01G029900	chr6D	88.636	44	5	0	5380	5423	260641794	260641751	3.000000e-03	54.7
37	TraesCS7A01G029900	chrUn	100.000	44	0	0	1677	1720	182456388	182456345	1.390000e-11	82.4
38	TraesCS7A01G029900	chrUn	100.000	44	0	0	1677	1720	231550109	231550152	1.390000e-11	82.4
39	TraesCS7A01G029900	chrUn	100.000	44	0	0	1677	1720	301692111	301692154	1.390000e-11	82.4
40	TraesCS7A01G029900	chrUn	94.444	36	2	0	5376	5411	245963213	245963248	8.440000e-04	56.5
41	TraesCS7A01G029900	chr5D	100.000	44	0	0	1677	1720	181475262	181475219	1.390000e-11	82.4
42	TraesCS7A01G029900	chr5D	85.484	62	7	2	5365	5426	408780891	408780832	5.040000e-06	63.9
43	TraesCS7A01G029900	chr5D	94.444	36	2	0	5376	5411	408779706	408779671	8.440000e-04	56.5
44	TraesCS7A01G029900	chr1A	100.000	44	0	0	1677	1720	68928664	68928621	1.390000e-11	82.4
45	TraesCS7A01G029900	chr1A	100.000	44	0	0	1677	1720	334059870	334059913	1.390000e-11	82.4
46	TraesCS7A01G029900	chr3D	89.091	55	4	2	5376	5429	579138746	579138799	3.900000e-07	67.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G029900	chr7A	12175373	12181397	6024	False	11127.000000	11127	100.000000	1	6025	1	chr7A.!!$F2	6024
1	TraesCS7A01G029900	chr7A	12131140	12131644	504	False	883.000000	883	98.218000	1	505	1	chr7A.!!$F1	504
2	TraesCS7A01G029900	chr4A	725588985	725590353	1368	True	1371.000000	1371	84.798000	4592	6014	1	chr4A.!!$R1	1422
3	TraesCS7A01G029900	chr4A	725659304	725664626	5322	True	1285.200000	3932	90.307000	900	5988	5	chr4A.!!$R2	5088
4	TraesCS7A01G029900	chr4A	636749568	636750071	503	False	881.000000	881	98.214000	1	504	1	chr4A.!!$F3	503
5	TraesCS7A01G029900	chr4A	636756552	636757055	503	False	870.000000	870	97.817000	1	504	1	chr4A.!!$F4	503
6	TraesCS7A01G029900	chr7D	12466723	12471732	5009	False	1593.000000	2575	89.771000	910	5989	4	chr7D.!!$F1	5079
7	TraesCS7A01G029900	chr6A	513965727	513966229	502	False	874.000000	874	98.016000	1	504	1	chr6A.!!$F3	503
8	TraesCS7A01G029900	chr6A	597641832	597642333	501	False	872.000000	872	98.012000	1	503	1	chr6A.!!$F4	502
9	TraesCS7A01G029900	chr6A	298519512	298520013	501	False	869.000000	869	97.817000	1	504	1	chr6A.!!$F1	503
10	TraesCS7A01G029900	chr5A	26906308	26906810	502	True	874.000000	874	98.016000	1	504	1	chr5A.!!$R1	503
11	TraesCS7A01G029900	chr5A	674036577	674037079	502	False	869.000000	869	97.817000	1	504	1	chr5A.!!$F2	503
12	TraesCS7A01G029900	chr7B	511061	511563	502	False	869.000000	869	97.817000	1	504	1	chr7B.!!$F1	503
13	TraesCS7A01G029900	chr1B	536407176	536411117	3941	False	251.666667	270	83.459667	1959	2262	3	chr1B.!!$F2	303
14	TraesCS7A01G029900	chr1B	629882615	629883160	545	False	202.000000	252	86.255000	2106	2584	2	chr1B.!!$F3	478
15	TraesCS7A01G029900	chr6B	709013146	709013776	630	False	248.000000	248	74.855000	2267	2942	1	chr6B.!!$F1	675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
582	583	0.031585	GTCAGCCACACACAGACGTA	59.968	55.000	0.00	0.00	0.00	3.57	F
583	584	0.031585	TCAGCCACACACAGACGTAC	59.968	55.000	0.00	0.00	0.00	3.67	F
651	652	0.034477	ATGAGCCCCCAAAACGGTAG	60.034	55.000	0.00	0.00	0.00	3.18	F
702	703	0.035152	AGATTGGCCTTGCGATGACA	60.035	50.000	3.32	0.00	0.00	3.58	F
1708	1736	0.036875	CTCGGACAGGCCCTCTTTTT	59.963	55.000	0.00	0.00	0.00	1.94	F
2092	2133	1.008361	CGTTTGCCGGGCATTTTGAG	61.008	55.000	24.49	7.71	38.76	3.02	F
2858	3008	1.974680	GTTCGTACAACTCCTTCGACG	59.025	52.381	0.00	0.00	0.00	5.12	F
2945	3095	0.390866	ATGAGCTTCCAGACTGCGTG	60.391	55.000	0.00	0.00	0.00	5.34	F
4656	5504	1.037579	TGAGCCTGTCGACGATCCAT	61.038	55.000	11.62	0.00	0.00	3.41	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1689	1717	0.036875	AAAAAGAGGGCCTGTCCGAG	59.963	55.000	12.95	34.94	4.63	R
2092	2133	0.039618	TTTCATGGTCCTTGAGGCCC	59.960	55.000	0.00	32.79	5.80	R
2263	2312	7.781324	TCAGTAGATAGCAATGACATATCCA	57.219	36.000	0.00	0.00	3.41	R
2344	2479	8.450578	TTTCCCATCATCATACTCATGTAAAC	57.549	34.615	0.00	33.57	2.01	R
2812	2962	2.129607	GTTTGCACACTGAATTGCCTG	58.870	47.619	0.00	38.00	4.85	R
2921	3071	2.169352	GCAGTCTGGAAGCTCATAAGGA	59.831	50.000	1.14	0.00	3.36	R
4363	5210	1.154150	GCAACACAGATGAAGCGGC	60.154	57.895	0.00	0.00	6.53	R
4931	5779	1.278985	CAGATGACAGTAAGGTGGGCA	59.721	52.381	0.00	0.00	5.36	R
5556	6680	0.400213	TCAATGCGTCAGGGGAAACT	59.600	50.000	0.00	0.00	2.66	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
269	270	3.744214	CGGGTGCTAAGCTAATGGAATGA	60.744	47.826	0.00	0.00	0.00	2.57
272	273	4.274459	GGTGCTAAGCTAATGGAATGAGTG	59.726	45.833	0.00	0.00	0.00	3.51
522	523	9.582648	AATAACTTACCTGATAGTTTTGGTGTT	57.417	29.630	0.00	0.00	36.16	3.32
523	524	7.506328	AACTTACCTGATAGTTTTGGTGTTC	57.494	36.000	0.00	0.00	30.72	3.18
524	525	6.838382	ACTTACCTGATAGTTTTGGTGTTCT	58.162	36.000	0.00	0.00	34.33	3.01
525	526	6.935208	ACTTACCTGATAGTTTTGGTGTTCTC	59.065	38.462	0.00	0.00	34.33	2.87
526	527	5.568620	ACCTGATAGTTTTGGTGTTCTCT	57.431	39.130	0.00	0.00	0.00	3.10
527	528	5.941788	ACCTGATAGTTTTGGTGTTCTCTT	58.058	37.500	0.00	0.00	0.00	2.85
528	529	5.998363	ACCTGATAGTTTTGGTGTTCTCTTC	59.002	40.000	0.00	0.00	0.00	2.87
530	531	7.016268	ACCTGATAGTTTTGGTGTTCTCTTCTA	59.984	37.037	0.00	0.00	0.00	2.10
531	532	7.547370	CCTGATAGTTTTGGTGTTCTCTTCTAG	59.453	40.741	0.00	0.00	0.00	2.43
532	533	7.386851	TGATAGTTTTGGTGTTCTCTTCTAGG	58.613	38.462	0.00	0.00	0.00	3.02
533	534	4.390264	AGTTTTGGTGTTCTCTTCTAGGC	58.610	43.478	0.00	0.00	0.00	3.93
534	535	2.743636	TTGGTGTTCTCTTCTAGGCG	57.256	50.000	0.00	0.00	0.00	5.52
536	537	2.799017	TGGTGTTCTCTTCTAGGCGTA	58.201	47.619	0.00	0.00	0.00	4.42
539	540	3.925299	GGTGTTCTCTTCTAGGCGTAAAC	59.075	47.826	0.00	0.00	0.00	2.01
540	541	3.607209	GTGTTCTCTTCTAGGCGTAAACG	59.393	47.826	0.00	0.00	43.27	3.60
553	554	1.859080	CGTAAACGCTAGATTGGCTCC	59.141	52.381	0.00	0.00	0.00	4.70
554	555	2.737359	CGTAAACGCTAGATTGGCTCCA	60.737	50.000	0.00	0.00	0.00	3.86
555	556	1.739067	AAACGCTAGATTGGCTCCAC	58.261	50.000	0.00	0.00	0.00	4.02
556	557	0.613260	AACGCTAGATTGGCTCCACA	59.387	50.000	0.00	0.00	0.00	4.17
557	558	0.613260	ACGCTAGATTGGCTCCACAA	59.387	50.000	0.00	0.00	34.41	3.33
558	559	1.293924	CGCTAGATTGGCTCCACAAG	58.706	55.000	0.00	0.00	33.23	3.16
560	561	2.677902	CGCTAGATTGGCTCCACAAGAA	60.678	50.000	0.00	0.00	33.23	2.52
562	563	2.957402	AGATTGGCTCCACAAGAACA	57.043	45.000	0.00	0.00	33.23	3.18
563	564	2.787994	AGATTGGCTCCACAAGAACAG	58.212	47.619	0.00	0.00	33.23	3.16
564	565	2.107204	AGATTGGCTCCACAAGAACAGT	59.893	45.455	0.00	0.00	33.23	3.55
565	566	1.967319	TTGGCTCCACAAGAACAGTC	58.033	50.000	0.00	0.00	0.00	3.51
567	568	1.202687	TGGCTCCACAAGAACAGTCAG	60.203	52.381	0.00	0.00	0.00	3.51
568	569	0.871057	GCTCCACAAGAACAGTCAGC	59.129	55.000	0.00	0.00	0.00	4.26
569	570	1.517242	CTCCACAAGAACAGTCAGCC	58.483	55.000	0.00	0.00	0.00	4.85
570	571	0.836606	TCCACAAGAACAGTCAGCCA	59.163	50.000	0.00	0.00	0.00	4.75
573	574	1.331756	CACAAGAACAGTCAGCCACAC	59.668	52.381	0.00	0.00	0.00	3.82
574	575	1.065491	ACAAGAACAGTCAGCCACACA	60.065	47.619	0.00	0.00	0.00	3.72
575	576	1.331756	CAAGAACAGTCAGCCACACAC	59.668	52.381	0.00	0.00	0.00	3.82
577	578	0.940126	GAACAGTCAGCCACACACAG	59.060	55.000	0.00	0.00	0.00	3.66
579	580	0.179073	ACAGTCAGCCACACACAGAC	60.179	55.000	0.00	0.00	0.00	3.51
580	581	1.068083	AGTCAGCCACACACAGACG	59.932	57.895	0.00	0.00	34.56	4.18
581	582	1.227263	GTCAGCCACACACAGACGT	60.227	57.895	0.00	0.00	0.00	4.34
582	583	0.031585	GTCAGCCACACACAGACGTA	59.968	55.000	0.00	0.00	0.00	3.57
583	584	0.031585	TCAGCCACACACAGACGTAC	59.968	55.000	0.00	0.00	0.00	3.67
593	594	3.588336	AGACGTACTGAGGCGGTC	58.412	61.111	0.00	0.00	0.00	4.79
594	595	1.303074	AGACGTACTGAGGCGGTCA	60.303	57.895	0.00	0.00	0.00	4.02
595	596	1.154073	GACGTACTGAGGCGGTCAC	60.154	63.158	0.00	0.00	0.00	3.67
596	597	1.584380	GACGTACTGAGGCGGTCACT	61.584	60.000	0.00	0.00	0.00	3.41
597	598	0.321919	ACGTACTGAGGCGGTCACTA	60.322	55.000	0.00	0.00	0.00	2.74
600	601	1.671845	GTACTGAGGCGGTCACTAGAG	59.328	57.143	0.00	0.00	0.00	2.43
601	602	0.328592	ACTGAGGCGGTCACTAGAGA	59.671	55.000	0.00	0.00	0.00	3.10
602	603	1.021202	CTGAGGCGGTCACTAGAGAG	58.979	60.000	0.00	0.00	0.00	3.20
603	604	0.394488	TGAGGCGGTCACTAGAGAGG	60.394	60.000	0.00	0.00	0.00	3.69
604	605	0.394625	GAGGCGGTCACTAGAGAGGT	60.395	60.000	0.00	0.00	0.00	3.85
605	606	0.039911	AGGCGGTCACTAGAGAGGTT	59.960	55.000	0.00	0.00	0.00	3.50
606	607	0.173708	GGCGGTCACTAGAGAGGTTG	59.826	60.000	0.00	0.00	0.00	3.77
608	609	1.178276	CGGTCACTAGAGAGGTTGCT	58.822	55.000	0.00	0.00	0.00	3.91
610	611	2.672478	CGGTCACTAGAGAGGTTGCTTG	60.672	54.545	0.00	0.00	0.00	4.01
612	613	1.276421	TCACTAGAGAGGTTGCTTGGC	59.724	52.381	0.00	0.00	0.00	4.52
613	614	0.247736	ACTAGAGAGGTTGCTTGGCG	59.752	55.000	0.00	0.00	0.00	5.69
614	615	0.460987	CTAGAGAGGTTGCTTGGCGG	60.461	60.000	0.00	0.00	0.00	6.13
615	616	1.192146	TAGAGAGGTTGCTTGGCGGT	61.192	55.000	0.00	0.00	0.00	5.68
616	617	2.281761	AGAGGTTGCTTGGCGGTG	60.282	61.111	0.00	0.00	0.00	4.94
617	618	2.281484	GAGGTTGCTTGGCGGTGA	60.281	61.111	0.00	0.00	0.00	4.02
618	619	2.281761	AGGTTGCTTGGCGGTGAG	60.282	61.111	0.00	0.00	0.00	3.51
631	632	1.576356	CGGTGAGCATCTAAAGAGCC	58.424	55.000	0.00	0.00	34.92	4.70
632	633	1.134699	CGGTGAGCATCTAAAGAGCCA	60.135	52.381	0.00	0.00	34.92	4.75
633	634	2.484417	CGGTGAGCATCTAAAGAGCCAT	60.484	50.000	0.00	0.00	34.92	4.40
634	635	2.877168	GGTGAGCATCTAAAGAGCCATG	59.123	50.000	0.00	0.00	34.92	3.66
635	636	3.432749	GGTGAGCATCTAAAGAGCCATGA	60.433	47.826	0.00	0.00	34.92	3.07
637	638	2.807392	GAGCATCTAAAGAGCCATGAGC	59.193	50.000	0.00	0.00	44.25	4.26
638	639	1.878734	GCATCTAAAGAGCCATGAGCC	59.121	52.381	0.00	0.00	45.47	4.70
639	640	2.502295	CATCTAAAGAGCCATGAGCCC	58.498	52.381	0.00	0.00	45.47	5.19
640	641	0.839946	TCTAAAGAGCCATGAGCCCC	59.160	55.000	0.00	0.00	45.47	5.80
641	642	0.179006	CTAAAGAGCCATGAGCCCCC	60.179	60.000	0.00	0.00	45.47	5.40
642	643	0.918799	TAAAGAGCCATGAGCCCCCA	60.919	55.000	0.00	0.00	45.47	4.96
643	644	1.803453	AAAGAGCCATGAGCCCCCAA	61.803	55.000	0.00	0.00	45.47	4.12
644	645	1.803453	AAGAGCCATGAGCCCCCAAA	61.803	55.000	0.00	0.00	45.47	3.28
646	647	1.607801	GAGCCATGAGCCCCCAAAAC	61.608	60.000	0.00	0.00	45.47	2.43
647	648	3.005540	GCCATGAGCCCCCAAAACG	62.006	63.158	0.00	0.00	34.35	3.60
648	649	2.350458	CCATGAGCCCCCAAAACGG	61.350	63.158	0.00	0.00	0.00	4.44
649	650	1.606313	CATGAGCCCCCAAAACGGT	60.606	57.895	0.00	0.00	0.00	4.83
650	651	0.322997	CATGAGCCCCCAAAACGGTA	60.323	55.000	0.00	0.00	0.00	4.02
651	652	0.034477	ATGAGCCCCCAAAACGGTAG	60.034	55.000	0.00	0.00	0.00	3.18
652	653	1.128809	TGAGCCCCCAAAACGGTAGA	61.129	55.000	0.00	0.00	0.00	2.59
653	654	0.255033	GAGCCCCCAAAACGGTAGAT	59.745	55.000	0.00	0.00	0.00	1.98
654	655	1.487558	GAGCCCCCAAAACGGTAGATA	59.512	52.381	0.00	0.00	0.00	1.98
655	656	1.211212	AGCCCCCAAAACGGTAGATAC	59.789	52.381	0.00	0.00	0.00	2.24
656	657	1.944032	CCCCCAAAACGGTAGATACG	58.056	55.000	0.00	0.00	37.36	3.06
657	658	1.481772	CCCCCAAAACGGTAGATACGA	59.518	52.381	0.00	0.00	34.93	3.43
658	659	2.103601	CCCCCAAAACGGTAGATACGAT	59.896	50.000	0.00	0.00	34.93	3.73
661	662	3.800506	CCCAAAACGGTAGATACGATCAC	59.199	47.826	0.00	0.00	34.93	3.06
662	663	4.441079	CCCAAAACGGTAGATACGATCACT	60.441	45.833	0.00	0.00	34.93	3.41
663	664	4.738740	CCAAAACGGTAGATACGATCACTC	59.261	45.833	0.00	0.00	34.93	3.51
664	665	5.337554	CAAAACGGTAGATACGATCACTCA	58.662	41.667	0.00	0.00	34.93	3.41
665	666	5.769484	AAACGGTAGATACGATCACTCAT	57.231	39.130	0.00	0.00	34.93	2.90
666	667	4.750952	ACGGTAGATACGATCACTCATG	57.249	45.455	0.00	0.00	34.93	3.07
667	668	3.058155	ACGGTAGATACGATCACTCATGC	60.058	47.826	0.00	0.00	34.93	4.06
668	669	3.493272	GGTAGATACGATCACTCATGCG	58.507	50.000	0.00	0.00	0.00	4.73
669	670	2.713895	AGATACGATCACTCATGCGG	57.286	50.000	0.00	0.00	0.00	5.69
670	671	2.230660	AGATACGATCACTCATGCGGA	58.769	47.619	0.00	0.00	0.00	5.54
673	674	0.179127	ACGATCACTCATGCGGACTG	60.179	55.000	0.00	0.00	0.00	3.51
674	675	1.485838	CGATCACTCATGCGGACTGC	61.486	60.000	0.00	0.00	46.70	4.40
686	687	2.406205	GGACTGCCGACGTCTAGAT	58.594	57.895	14.70	0.00	0.00	1.98
687	688	0.739561	GGACTGCCGACGTCTAGATT	59.260	55.000	14.70	0.00	0.00	2.40
688	689	1.534175	GGACTGCCGACGTCTAGATTG	60.534	57.143	14.70	0.00	0.00	2.67
689	690	0.456221	ACTGCCGACGTCTAGATTGG	59.544	55.000	14.70	7.27	0.00	3.16
690	691	0.872021	CTGCCGACGTCTAGATTGGC	60.872	60.000	19.28	19.28	42.76	4.52
692	693	2.017559	GCCGACGTCTAGATTGGCCT	62.018	60.000	16.34	0.00	36.51	5.19
693	694	0.460311	CCGACGTCTAGATTGGCCTT	59.540	55.000	14.70	0.00	0.00	4.35
696	697	0.460284	ACGTCTAGATTGGCCTTGCG	60.460	55.000	3.32	0.00	0.00	4.85
697	698	0.179111	CGTCTAGATTGGCCTTGCGA	60.179	55.000	3.32	0.00	0.00	5.10
698	699	1.539065	CGTCTAGATTGGCCTTGCGAT	60.539	52.381	3.32	0.00	0.00	4.58
701	702	1.869767	CTAGATTGGCCTTGCGATGAC	59.130	52.381	3.32	0.00	0.00	3.06
702	703	0.035152	AGATTGGCCTTGCGATGACA	60.035	50.000	3.32	0.00	0.00	3.58
703	704	0.099436	GATTGGCCTTGCGATGACAC	59.901	55.000	3.32	0.00	0.00	3.67
704	705	0.608856	ATTGGCCTTGCGATGACACA	60.609	50.000	3.32	0.00	0.00	3.72
705	706	0.821301	TTGGCCTTGCGATGACACAA	60.821	50.000	3.32	0.00	0.00	3.33
707	708	0.955428	GGCCTTGCGATGACACAAGA	60.955	55.000	0.00	0.00	44.89	3.02
708	709	0.874390	GCCTTGCGATGACACAAGAA	59.126	50.000	4.39	0.00	44.89	2.52
709	710	1.470098	GCCTTGCGATGACACAAGAAT	59.530	47.619	4.39	0.00	44.89	2.40
710	711	2.095059	GCCTTGCGATGACACAAGAATT	60.095	45.455	4.39	0.00	44.89	2.17
722	723	0.462789	CAAGAATTGCCCATGAGCCC	59.537	55.000	0.00	0.00	40.39	5.19
723	724	0.688749	AAGAATTGCCCATGAGCCCC	60.689	55.000	0.00	0.00	0.00	5.80
725	726	2.877089	GAATTGCCCATGAGCCCCCA	62.877	60.000	0.00	0.00	0.00	4.96
727	728	2.474133	ATTGCCCATGAGCCCCCAAA	62.474	55.000	0.00	0.00	0.00	3.28
728	729	2.284552	GCCCATGAGCCCCCAAAA	60.285	61.111	0.00	0.00	0.00	2.44
729	730	2.659063	GCCCATGAGCCCCCAAAAC	61.659	63.158	0.00	0.00	0.00	2.43
730	731	1.229145	CCCATGAGCCCCCAAAACA	60.229	57.895	0.00	0.00	0.00	2.83
731	732	0.835543	CCCATGAGCCCCCAAAACAA	60.836	55.000	0.00	0.00	0.00	2.83
732	733	0.321346	CCATGAGCCCCCAAAACAAC	59.679	55.000	0.00	0.00	0.00	3.32
733	734	1.341080	CATGAGCCCCCAAAACAACT	58.659	50.000	0.00	0.00	0.00	3.16
734	735	2.524306	CATGAGCCCCCAAAACAACTA	58.476	47.619	0.00	0.00	0.00	2.24
736	737	0.879090	GAGCCCCCAAAACAACTACG	59.121	55.000	0.00	0.00	0.00	3.51
737	738	0.475044	AGCCCCCAAAACAACTACGA	59.525	50.000	0.00	0.00	0.00	3.43
738	739	1.074889	AGCCCCCAAAACAACTACGAT	59.925	47.619	0.00	0.00	0.00	3.73
740	741	2.510613	CCCCCAAAACAACTACGATGT	58.489	47.619	0.00	0.00	0.00	3.06
741	742	2.486592	CCCCCAAAACAACTACGATGTC	59.513	50.000	0.00	0.00	0.00	3.06
742	743	2.158841	CCCCAAAACAACTACGATGTCG	59.841	50.000	0.11	0.11	46.33	4.35
743	744	3.061322	CCCAAAACAACTACGATGTCGA	58.939	45.455	9.67	0.00	43.02	4.20
744	745	3.682858	CCCAAAACAACTACGATGTCGAT	59.317	43.478	9.67	0.00	43.02	3.59
746	747	4.387559	CCAAAACAACTACGATGTCGATCA	59.612	41.667	9.67	0.00	43.02	2.92
747	748	5.305812	CAAAACAACTACGATGTCGATCAC	58.694	41.667	9.67	0.00	43.02	3.06
748	749	3.842732	ACAACTACGATGTCGATCACA	57.157	42.857	9.67	0.00	43.02	3.58
749	750	3.499048	ACAACTACGATGTCGATCACAC	58.501	45.455	9.67	0.00	43.02	3.82
750	751	3.057806	ACAACTACGATGTCGATCACACA	60.058	43.478	9.67	0.00	43.02	3.72
752	753	4.371855	ACTACGATGTCGATCACACATT	57.628	40.909	9.67	0.00	43.02	2.71
754	755	5.271625	ACTACGATGTCGATCACACATTAC	58.728	41.667	9.67	0.00	43.02	1.89
755	756	4.371855	ACGATGTCGATCACACATTACT	57.628	40.909	9.67	0.00	43.02	2.24
756	757	5.494632	ACGATGTCGATCACACATTACTA	57.505	39.130	9.67	0.00	43.02	1.82
758	759	5.296035	ACGATGTCGATCACACATTACTAGA	59.704	40.000	9.67	0.00	43.02	2.43
759	760	6.183360	ACGATGTCGATCACACATTACTAGAA	60.183	38.462	9.67	0.00	43.02	2.10
760	761	6.691388	CGATGTCGATCACACATTACTAGAAA	59.309	38.462	8.36	0.00	43.02	2.52
762	763	8.771920	ATGTCGATCACACATTACTAGAAAAA	57.228	30.769	0.00	0.00	38.04	1.94
763	764	8.771920	TGTCGATCACACATTACTAGAAAAAT	57.228	30.769	0.00	0.00	0.00	1.82
764	765	9.863845	TGTCGATCACACATTACTAGAAAAATA	57.136	29.630	0.00	0.00	0.00	1.40
776	777	6.391227	ACTAGAAAAATAAATCATGGGCGG	57.609	37.500	0.00	0.00	0.00	6.13
777	778	5.891551	ACTAGAAAAATAAATCATGGGCGGT	59.108	36.000	0.00	0.00	0.00	5.68
778	779	5.009854	AGAAAAATAAATCATGGGCGGTG	57.990	39.130	0.00	0.00	0.00	4.94
779	780	4.709397	AGAAAAATAAATCATGGGCGGTGA	59.291	37.500	0.00	0.00	0.00	4.02
780	781	5.363580	AGAAAAATAAATCATGGGCGGTGAT	59.636	36.000	0.00	0.00	37.91	3.06
782	783	1.877637	TAAATCATGGGCGGTGATCG	58.122	50.000	4.08	0.00	35.35	3.69
783	784	0.180171	AAATCATGGGCGGTGATCGA	59.820	50.000	0.00	0.00	42.43	3.59
784	785	0.250038	AATCATGGGCGGTGATCGAG	60.250	55.000	0.00	0.00	42.43	4.04
787	788	1.832608	ATGGGCGGTGATCGAGCTA	60.833	57.895	0.90	0.00	42.43	3.32
788	789	1.399744	ATGGGCGGTGATCGAGCTAA	61.400	55.000	0.90	0.00	42.43	3.09
789	790	1.367840	GGGCGGTGATCGAGCTAAT	59.632	57.895	0.90	0.00	42.43	1.73
792	793	2.547218	GGGCGGTGATCGAGCTAATAAA	60.547	50.000	0.90	0.00	42.43	1.40
793	794	3.128349	GGCGGTGATCGAGCTAATAAAA	58.872	45.455	0.90	0.00	42.43	1.52
794	795	3.184581	GGCGGTGATCGAGCTAATAAAAG	59.815	47.826	0.90	0.00	42.43	2.27
796	797	4.369182	CGGTGATCGAGCTAATAAAAGGT	58.631	43.478	0.90	0.00	42.43	3.50
797	798	4.444720	CGGTGATCGAGCTAATAAAAGGTC	59.555	45.833	0.90	0.00	42.43	3.85
803	804	3.793559	GAGCTAATAAAAGGTCGCCTCA	58.206	45.455	0.00	0.00	34.59	3.86
804	805	4.189231	GAGCTAATAAAAGGTCGCCTCAA	58.811	43.478	0.00	0.00	34.59	3.02
805	806	4.585879	AGCTAATAAAAGGTCGCCTCAAA	58.414	39.130	0.00	0.00	30.89	2.69
806	807	5.007682	AGCTAATAAAAGGTCGCCTCAAAA	58.992	37.500	0.00	0.00	30.89	2.44
807	808	5.123979	AGCTAATAAAAGGTCGCCTCAAAAG	59.876	40.000	0.00	0.00	30.89	2.27
808	809	5.106277	GCTAATAAAAGGTCGCCTCAAAAGT	60.106	40.000	0.00	0.00	30.89	2.66
809	810	6.093082	GCTAATAAAAGGTCGCCTCAAAAGTA	59.907	38.462	0.00	0.00	30.89	2.24
810	811	7.201705	GCTAATAAAAGGTCGCCTCAAAAGTAT	60.202	37.037	0.00	0.00	30.89	2.12
811	812	9.321562	CTAATAAAAGGTCGCCTCAAAAGTATA	57.678	33.333	0.00	0.00	30.89	1.47
812	813	8.747538	AATAAAAGGTCGCCTCAAAAGTATAT	57.252	30.769	0.00	0.00	30.89	0.86
813	814	8.747538	ATAAAAGGTCGCCTCAAAAGTATATT	57.252	30.769	0.00	0.00	30.89	1.28
815	816	7.462571	AAAGGTCGCCTCAAAAGTATATTTT	57.537	32.000	0.00	0.00	30.89	1.82
816	817	6.436843	AGGTCGCCTCAAAAGTATATTTTG	57.563	37.500	6.72	6.72	39.90	2.44
817	818	6.177610	AGGTCGCCTCAAAAGTATATTTTGA	58.822	36.000	13.41	13.41	43.62	2.69
818	819	6.828785	AGGTCGCCTCAAAAGTATATTTTGAT	59.171	34.615	14.22	0.00	44.41	2.57
819	820	6.912591	GGTCGCCTCAAAAGTATATTTTGATG	59.087	38.462	14.22	12.79	44.41	3.07
820	821	6.912591	GTCGCCTCAAAAGTATATTTTGATGG	59.087	38.462	14.22	16.29	44.41	3.51
822	823	7.338196	TCGCCTCAAAAGTATATTTTGATGGAA	59.662	33.333	22.04	13.29	44.41	3.53
823	824	7.645340	CGCCTCAAAAGTATATTTTGATGGAAG	59.355	37.037	22.04	15.62	44.41	3.46
824	825	8.686334	GCCTCAAAAGTATATTTTGATGGAAGA	58.314	33.333	22.04	3.59	44.41	2.87
849	850	6.875926	AAAGAAAGATAAAATCATGCACGC	57.124	33.333	0.00	0.00	0.00	5.34
850	851	5.565592	AGAAAGATAAAATCATGCACGCA	57.434	34.783	0.00	0.00	0.00	5.24
851	852	5.575957	AGAAAGATAAAATCATGCACGCAG	58.424	37.500	0.00	0.00	0.00	5.18
854	855	6.866010	AAGATAAAATCATGCACGCAGATA	57.134	33.333	0.00	0.00	0.00	1.98
856	857	6.839033	AGATAAAATCATGCACGCAGATATG	58.161	36.000	0.00	0.00	0.00	1.78
857	858	6.652062	AGATAAAATCATGCACGCAGATATGA	59.348	34.615	0.00	0.00	34.42	2.15
858	859	4.478843	AAATCATGCACGCAGATATGAC	57.521	40.909	0.00	0.00	32.90	3.06
859	860	2.600470	TCATGCACGCAGATATGACA	57.400	45.000	0.00	0.00	0.00	3.58
860	861	2.903798	TCATGCACGCAGATATGACAA	58.096	42.857	0.00	0.00	0.00	3.18
861	862	3.269178	TCATGCACGCAGATATGACAAA	58.731	40.909	0.00	0.00	0.00	2.83
862	863	3.878699	TCATGCACGCAGATATGACAAAT	59.121	39.130	0.00	0.00	0.00	2.32
863	864	4.336153	TCATGCACGCAGATATGACAAATT	59.664	37.500	0.00	0.00	0.00	1.82
864	865	4.277257	TGCACGCAGATATGACAAATTC	57.723	40.909	0.00	0.00	0.00	2.17
867	868	4.201950	GCACGCAGATATGACAAATTCCTT	60.202	41.667	0.00	0.00	0.00	3.36
868	869	5.677091	GCACGCAGATATGACAAATTCCTTT	60.677	40.000	0.00	0.00	0.00	3.11
869	870	6.324819	CACGCAGATATGACAAATTCCTTTT	58.675	36.000	0.00	0.00	0.00	2.27
872	873	6.237648	CGCAGATATGACAAATTCCTTTTTGC	60.238	38.462	0.00	0.00	39.65	3.68
875	876	8.653338	CAGATATGACAAATTCCTTTTTGCAAG	58.347	33.333	0.00	0.00	39.65	4.01
877	878	5.096443	TGACAAATTCCTTTTTGCAAGGT	57.904	34.783	0.00	0.00	39.65	3.50
879	880	5.096443	ACAAATTCCTTTTTGCAAGGTCA	57.904	34.783	0.00	0.00	39.65	4.02
880	881	4.875536	ACAAATTCCTTTTTGCAAGGTCAC	59.124	37.500	0.00	0.00	39.65	3.67
882	883	2.045561	TCCTTTTTGCAAGGTCACGA	57.954	45.000	0.00	0.00	38.55	4.35
886	887	1.452145	TTTTGCAAGGTCACGAGGCC	61.452	55.000	0.00	0.00	0.00	5.19
887	888	2.616797	TTTGCAAGGTCACGAGGCCA	62.617	55.000	5.01	0.00	0.00	5.36
888	889	2.281484	GCAAGGTCACGAGGCCAA	60.281	61.111	5.01	0.00	0.00	4.52
889	890	1.896660	GCAAGGTCACGAGGCCAAA	60.897	57.895	5.01	0.00	0.00	3.28
890	891	1.949257	CAAGGTCACGAGGCCAAAC	59.051	57.895	5.01	0.00	0.00	2.93
891	892	1.597027	AAGGTCACGAGGCCAAACG	60.597	57.895	5.01	10.64	0.00	3.60
892	893	2.029964	GGTCACGAGGCCAAACGA	59.970	61.111	20.27	2.71	0.00	3.85
894	895	1.161563	GGTCACGAGGCCAAACGAAA	61.162	55.000	20.27	7.65	0.00	3.46
895	896	0.658897	GTCACGAGGCCAAACGAAAA	59.341	50.000	20.27	5.65	0.00	2.29
897	898	0.660300	CACGAGGCCAAACGAAAAGC	60.660	55.000	20.27	0.00	0.00	3.51
898	899	1.081442	CGAGGCCAAACGAAAAGCC	60.081	57.895	5.01	0.00	46.13	4.35
904	905	2.328473	GCCAAACGAAAAGCCTTGATC	58.672	47.619	0.00	0.00	0.00	2.92
907	908	4.559153	CCAAACGAAAAGCCTTGATCATT	58.441	39.130	0.00	0.00	0.00	2.57
933	934	1.740380	CGGATGAGATGAAGCCACGTT	60.740	52.381	0.00	0.00	0.00	3.99
934	935	2.481276	CGGATGAGATGAAGCCACGTTA	60.481	50.000	0.00	0.00	0.00	3.18
968	969	3.226777	CATATCTCCGTCCCTGTCTCTT	58.773	50.000	0.00	0.00	0.00	2.85
969	970	4.399219	CATATCTCCGTCCCTGTCTCTTA	58.601	47.826	0.00	0.00	0.00	2.10
970	971	3.603965	ATCTCCGTCCCTGTCTCTTAT	57.396	47.619	0.00	0.00	0.00	1.73
971	972	4.726035	ATCTCCGTCCCTGTCTCTTATA	57.274	45.455	0.00	0.00	0.00	0.98
972	973	4.088056	TCTCCGTCCCTGTCTCTTATAG	57.912	50.000	0.00	0.00	0.00	1.31
973	974	3.458857	TCTCCGTCCCTGTCTCTTATAGT	59.541	47.826	0.00	0.00	0.00	2.12
990	991	7.010771	TCTTATAGTTATAGAGAGCAGGGCAA	58.989	38.462	0.00	0.00	0.00	4.52
996	999	0.183492	AGAGAGCAGGGCAACAACAA	59.817	50.000	0.00	0.00	39.74	2.83
1008	1011	5.240844	AGGGCAACAACAAAACATACTACTC	59.759	40.000	0.00	0.00	39.74	2.59
1106	1112	0.179026	CGTGGTAGGATCCTCCGAGA	60.179	60.000	20.22	0.00	42.75	4.04
1159	1175	0.174845	CGAATCTTCCGCCAGGTACA	59.825	55.000	0.00	0.00	39.05	2.90
1191	1207	0.729690	GCACGGAGATTTCTTGGCTC	59.270	55.000	0.00	0.00	0.00	4.70
1197	1213	3.192541	GAGATTTCTTGGCTCTCCTCC	57.807	52.381	0.00	0.00	31.25	4.30
1198	1214	2.771372	GAGATTTCTTGGCTCTCCTCCT	59.229	50.000	0.00	0.00	31.25	3.69
1200	1216	1.280457	TTTCTTGGCTCTCCTCCTCC	58.720	55.000	0.00	0.00	0.00	4.30
1311	1328	0.182537	TGGCCTGGATTGGGTTATCG	59.817	55.000	3.32	0.00	0.00	2.92
1326	1343	2.812591	GTTATCGCGGGAGATCAGTCTA	59.187	50.000	6.13	0.00	33.97	2.59
1333	1350	2.238521	GGGAGATCAGTCTAGCTCTGG	58.761	57.143	12.47	0.00	33.97	3.86
1336	1353	2.031120	AGATCAGTCTAGCTCTGGTGC	58.969	52.381	12.47	0.00	34.15	5.01
1350	1367	2.394563	GGTGCTCTCTTTGCTCGCC	61.395	63.158	0.00	0.00	0.00	5.54
1379	1396	5.353123	GCGATCTACTCCGAAATAGATCTCT	59.647	44.000	18.60	0.00	46.27	3.10
1385	1402	5.020132	ACTCCGAAATAGATCTCTATGGGG	58.980	45.833	0.00	0.00	39.02	4.96
1390	1407	5.246203	CGAAATAGATCTCTATGGGGTGGAA	59.754	44.000	0.00	0.00	39.02	3.53
1412	1429	1.134371	GGTACTCCAATCCAGTCCAGC	60.134	57.143	0.00	0.00	0.00	4.85
1448	1465	2.414785	ATCCAATTCGTTGCGGCCC	61.415	57.895	0.00	0.00	0.00	5.80
1484	1506	2.097036	CAATTGCCAGCTGATTCCAGA	58.903	47.619	17.39	0.00	43.02	3.86
1575	1597	5.071519	GGGATCCTTCTTGATCTGATGAAGA	59.928	44.000	14.35	14.35	40.80	2.87
1583	1605	2.171870	TGATCTGATGAAGATGGCAGCA	59.828	45.455	5.19	0.00	46.12	4.41
1584	1606	2.034104	TCTGATGAAGATGGCAGCAC	57.966	50.000	5.19	0.00	0.00	4.40
1585	1607	1.022735	CTGATGAAGATGGCAGCACC	58.977	55.000	5.19	0.00	39.84	5.01
1586	1608	0.622136	TGATGAAGATGGCAGCACCT	59.378	50.000	5.19	0.00	40.22	4.00
1587	1609	1.005097	TGATGAAGATGGCAGCACCTT	59.995	47.619	5.19	0.00	40.22	3.50
1588	1610	1.404391	GATGAAGATGGCAGCACCTTG	59.596	52.381	5.19	0.00	40.22	3.61
1589	1611	1.246056	TGAAGATGGCAGCACCTTGC	61.246	55.000	5.19	0.00	45.46	4.01
1617	1639	1.580066	AAAGGGGGCGATGATTCCCA	61.580	55.000	6.14	0.00	44.43	4.37
1623	1645	0.451783	GGCGATGATTCCCAACACAC	59.548	55.000	0.00	0.00	0.00	3.82
1661	1689	5.990120	AGGGGAATGAATTCTTGAAACAG	57.010	39.130	7.05	0.00	37.00	3.16
1662	1690	4.221482	AGGGGAATGAATTCTTGAAACAGC	59.779	41.667	7.05	0.00	37.00	4.40
1664	1692	5.405797	GGGAATGAATTCTTGAAACAGCTC	58.594	41.667	7.05	0.00	37.00	4.09
1678	1706	1.074752	CAGCTCGGCTCTGTCTTTTC	58.925	55.000	0.00	0.00	36.40	2.29
1679	1707	0.972883	AGCTCGGCTCTGTCTTTTCT	59.027	50.000	0.00	0.00	30.62	2.52
1680	1708	1.346068	AGCTCGGCTCTGTCTTTTCTT	59.654	47.619	0.00	0.00	30.62	2.52
1681	1709	2.147150	GCTCGGCTCTGTCTTTTCTTT	58.853	47.619	0.00	0.00	0.00	2.52
1682	1710	3.006967	AGCTCGGCTCTGTCTTTTCTTTA	59.993	43.478	0.00	0.00	30.62	1.85
1684	1712	4.393371	GCTCGGCTCTGTCTTTTCTTTATT	59.607	41.667	0.00	0.00	0.00	1.40
1686	1714	6.481954	TCGGCTCTGTCTTTTCTTTATTTC	57.518	37.500	0.00	0.00	0.00	2.17
1687	1715	5.411669	TCGGCTCTGTCTTTTCTTTATTTCC	59.588	40.000	0.00	0.00	0.00	3.13
1688	1716	5.412904	CGGCTCTGTCTTTTCTTTATTTCCT	59.587	40.000	0.00	0.00	0.00	3.36
1689	1717	6.402658	CGGCTCTGTCTTTTCTTTATTTCCTC	60.403	42.308	0.00	0.00	0.00	3.71
1693	1721	6.874134	TCTGTCTTTTCTTTATTTCCTCTCGG	59.126	38.462	0.00	0.00	0.00	4.63
1694	1722	6.765403	TGTCTTTTCTTTATTTCCTCTCGGA	58.235	36.000	0.00	0.00	37.60	4.55
1695	1723	6.649557	TGTCTTTTCTTTATTTCCTCTCGGAC	59.350	38.462	0.00	0.00	39.60	4.79
1696	1724	6.649557	GTCTTTTCTTTATTTCCTCTCGGACA	59.350	38.462	0.00	0.00	39.60	4.02
1697	1725	6.874134	TCTTTTCTTTATTTCCTCTCGGACAG	59.126	38.462	0.00	0.00	39.60	3.51
1698	1726	4.737855	TCTTTATTTCCTCTCGGACAGG	57.262	45.455	0.00	0.00	39.60	4.00
1699	1727	2.981859	TTATTTCCTCTCGGACAGGC	57.018	50.000	0.00	0.00	39.60	4.85
1700	1728	1.120530	TATTTCCTCTCGGACAGGCC	58.879	55.000	0.00	0.00	39.60	5.19
1701	1729	1.627297	ATTTCCTCTCGGACAGGCCC	61.627	60.000	0.00	0.00	39.60	5.80
1706	1734	1.229209	TCTCGGACAGGCCCTCTTT	60.229	57.895	0.00	0.00	0.00	2.52
1707	1735	0.836400	TCTCGGACAGGCCCTCTTTT	60.836	55.000	0.00	0.00	0.00	2.27
1708	1736	0.036875	CTCGGACAGGCCCTCTTTTT	59.963	55.000	0.00	0.00	0.00	1.94
1726	1754	4.799564	TTTTTCATTCGAATGGAAGGGG	57.200	40.909	32.03	10.22	35.43	4.79
1742	1771	4.262938	GGAAGGGGGCATATGTAGTTAGTC	60.263	50.000	4.29	0.00	0.00	2.59
1775	1804	1.590932	CATCGAGCTTCAGGATTGGG	58.409	55.000	0.00	0.00	0.00	4.12
1803	1832	3.248171	CGTCTTGCCGTCTAGCGC	61.248	66.667	0.00	0.00	39.71	5.92
1804	1833	2.126071	GTCTTGCCGTCTAGCGCA	60.126	61.111	11.47	0.00	39.71	6.09
1829	1858	5.353956	AGCGTGCATGTTAACATAAGAATGA	59.646	36.000	20.39	0.00	36.54	2.57
1851	1880	1.300266	TTTTGTAACTAGCGGCGCCC	61.300	55.000	30.40	14.23	0.00	6.13
1883	1924	2.095263	GGCGTTGCTTGATTTTAGCTCA	60.095	45.455	0.00	0.00	39.38	4.26
1889	1930	4.765273	TGCTTGATTTTAGCTCATCCGTA	58.235	39.130	0.00	0.00	39.38	4.02
1953	1994	1.198094	TGCCGAATGGAGGAGGTTGA	61.198	55.000	0.00	0.00	37.49	3.18
1960	2001	4.097361	GAGGAGGTTGACCCCGCC	62.097	72.222	0.00	0.00	44.21	6.13
2092	2133	1.008361	CGTTTGCCGGGCATTTTGAG	61.008	55.000	24.49	7.71	38.76	3.02
2242	2284	5.872070	AGCTTACTAGAGCAATGTGTTTCTC	59.128	40.000	6.24	0.00	45.12	2.87
2344	2479	6.644347	ACTACAATCAACCCTATCTCAGTTG	58.356	40.000	0.00	0.00	41.75	3.16
2587	2730	5.130975	ACCTTCTACATATGCTGACATCCAA	59.869	40.000	1.58	0.00	37.74	3.53
2709	2858	5.468072	CAGTCTCTGTTTTCTGTAGCAACAT	59.532	40.000	0.00	0.00	34.37	2.71
2790	2940	2.413634	GGCCTTAATTTTCGACGGTGTG	60.414	50.000	0.00	0.00	0.00	3.82
2812	2962	5.805994	GTGTAGAAAGTGGTAGTGCTATGTC	59.194	44.000	0.00	0.00	0.00	3.06
2858	3008	1.974680	GTTCGTACAACTCCTTCGACG	59.025	52.381	0.00	0.00	0.00	5.12
2915	3065	8.571336	CCAGTTTTGTTTAGAGATGTCAAGATT	58.429	33.333	0.00	0.00	0.00	2.40
2945	3095	0.390866	ATGAGCTTCCAGACTGCGTG	60.391	55.000	0.00	0.00	0.00	5.34
3067	3222	4.678743	GGGTGGGGGTGGTCTTGC	62.679	72.222	0.00	0.00	0.00	4.01
3348	3514	6.674760	GCATCGTAACTGAATAAACACTTCCC	60.675	42.308	0.00	0.00	0.00	3.97
3395	3561	4.450976	TCTTCAGCTTCTGTTTAGTTGCA	58.549	39.130	0.00	0.00	32.61	4.08
3399	3565	4.640201	TCAGCTTCTGTTTAGTTGCAACTT	59.360	37.500	35.20	19.78	35.33	2.66
3410	3576	8.254508	TGTTTAGTTGCAACTTTTGGACTTATT	58.745	29.630	35.20	10.63	40.37	1.40
3484	3719	2.189342	GAACTACTAAGCTCAGCTGCG	58.811	52.381	9.47	3.41	39.62	5.18
3580	3815	6.925610	TCAACAGACAAATATACTGATGGC	57.074	37.500	0.00	0.00	35.93	4.40
3642	4448	7.668469	GGGGGAACTTCTTTTACTAATGAGAAA	59.332	37.037	0.00	0.00	0.00	2.52
3877	4684	1.269778	GGGTGCTTTCAGTTTCTTGGC	60.270	52.381	0.00	0.00	0.00	4.52
3902	4709	6.200475	CGCACTAGATTATGCTATGATCATGG	59.800	42.308	18.72	16.47	39.79	3.66
3990	4799	2.383368	TTGGGTTTCCGTATGTACCG	57.617	50.000	0.00	0.00	35.24	4.02
4078	4897	3.968649	TCTCTGCACTGAAATTGTTTGC	58.031	40.909	0.00	0.00	0.00	3.68
4363	5210	3.479505	TGTTGTCACAACTGTTTTCGG	57.520	42.857	21.23	0.00	0.00	4.30
4443	5291	2.224018	GGCAACAAATTGTCTCCTTGCA	60.224	45.455	17.85	0.00	37.46	4.08
4656	5504	1.037579	TGAGCCTGTCGACGATCCAT	61.038	55.000	11.62	0.00	0.00	3.41
4741	5589	3.495629	GGCATAGATGTCTTGAGGCATCA	60.496	47.826	23.19	12.26	42.72	3.07
4742	5590	3.747010	GCATAGATGTCTTGAGGCATCAG	59.253	47.826	23.19	14.94	42.72	2.90
4760	5608	2.362503	TCGCCATGGACGAGGAGT	60.363	61.111	22.05	0.00	33.96	3.85
4931	5779	5.534207	TGAATTGAATTCTGCCAGTGTTT	57.466	34.783	17.76	0.00	39.96	2.83
4937	5785	1.391157	TTCTGCCAGTGTTTGCCCAC	61.391	55.000	0.00	0.00	35.53	4.61
4959	5808	3.493350	CCTTACTGTCATCTGGGGAATCG	60.493	52.174	0.00	0.00	0.00	3.34
4967	5816	0.614697	TCTGGGGAATCGTCTGCTGA	60.615	55.000	0.00	0.00	0.00	4.26
4998	5848	0.528470	ACCGTTGGTTGGTTGTTGTG	59.472	50.000	0.00	0.00	35.82	3.33
5130	5986	1.408702	TCTTTGGTTTGCAGGCAGTTC	59.591	47.619	0.00	0.00	0.00	3.01
5138	5996	4.429108	GTTTGCAGGCAGTTCTTTTACAA	58.571	39.130	0.00	0.00	0.00	2.41
5145	6003	6.699642	GCAGGCAGTTCTTTTACAATTTGTTA	59.300	34.615	7.45	0.00	0.00	2.41
5147	6005	7.169140	CAGGCAGTTCTTTTACAATTTGTTACC	59.831	37.037	7.45	0.00	0.00	2.85
5148	6006	6.981559	GGCAGTTCTTTTACAATTTGTTACCA	59.018	34.615	7.45	0.00	0.00	3.25
5167	6025	3.636764	ACCAAGTGTTTCCTGTGAAATCC	59.363	43.478	0.00	0.00	42.20	3.01
5169	6027	4.281688	CCAAGTGTTTCCTGTGAAATCCAT	59.718	41.667	0.00	0.00	42.20	3.41
5182	6040	5.476254	TGTGAAATCCATGCAGTACATTTCA	59.524	36.000	16.21	16.21	39.83	2.69
5187	6045	2.947652	CCATGCAGTACATTTCAGGAGG	59.052	50.000	0.00	0.00	36.64	4.30
5222	6341	1.533625	TTGCAGGGATTTTGGAGTCG	58.466	50.000	0.00	0.00	0.00	4.18
5225	6344	1.032114	CAGGGATTTTGGAGTCGGGC	61.032	60.000	0.00	0.00	0.00	6.13
5309	6428	4.399618	TGTTTTTCCCATGAAACGAGAACA	59.600	37.500	0.00	0.00	40.12	3.18
5364	6483	7.865707	ACAACAGTGTGTCTAAATCAATCTTC	58.134	34.615	0.00	0.00	36.31	2.87
5365	6484	7.498900	ACAACAGTGTGTCTAAATCAATCTTCA	59.501	33.333	0.00	0.00	36.31	3.02
5366	6485	8.344831	CAACAGTGTGTCTAAATCAATCTTCAA	58.655	33.333	0.00	0.00	0.00	2.69
5367	6486	8.627208	ACAGTGTGTCTAAATCAATCTTCAAT	57.373	30.769	0.00	0.00	0.00	2.57
5368	6487	8.725148	ACAGTGTGTCTAAATCAATCTTCAATC	58.275	33.333	0.00	0.00	0.00	2.67
5369	6488	8.944029	CAGTGTGTCTAAATCAATCTTCAATCT	58.056	33.333	0.00	0.00	0.00	2.40
5370	6489	9.512588	AGTGTGTCTAAATCAATCTTCAATCTT	57.487	29.630	0.00	0.00	0.00	2.40
5406	6525	6.604735	AGATACATCCATTTAAGCGACAAC	57.395	37.500	0.00	0.00	0.00	3.32
5407	6526	5.527582	AGATACATCCATTTAAGCGACAACC	59.472	40.000	0.00	0.00	0.00	3.77
5413	6532	4.082463	TCCATTTAAGCGACAACCAATTCC	60.082	41.667	0.00	0.00	0.00	3.01
5414	6533	4.321601	CCATTTAAGCGACAACCAATTCCA	60.322	41.667	0.00	0.00	0.00	3.53
5433	6556	3.194968	TCCAGACGGAGGAAGTACAAATC	59.805	47.826	0.00	0.00	35.91	2.17
5437	6560	5.643777	CAGACGGAGGAAGTACAAATCAAAT	59.356	40.000	0.00	0.00	0.00	2.32
5439	6562	5.556915	ACGGAGGAAGTACAAATCAAATGA	58.443	37.500	0.00	0.00	0.00	2.57
5458	6581	8.034215	TCAAATGACAAACAAACACTGAAGAAT	58.966	29.630	0.00	0.00	0.00	2.40
5459	6582	7.760131	AATGACAAACAAACACTGAAGAATG	57.240	32.000	0.00	0.00	0.00	2.67
5489	6612	7.360361	ACAATGTTTCTCAACCGATCTTAAAC	58.640	34.615	0.00	0.00	31.02	2.01
5495	6618	7.519032	TTCTCAACCGATCTTAAACCAAAAT	57.481	32.000	0.00	0.00	0.00	1.82
5502	6625	5.469479	CGATCTTAAACCAAAATGGCAACT	58.531	37.500	0.00	0.00	42.67	3.16
5521	6644	4.613925	ACTTCTTGCAGTTGAGATCTGA	57.386	40.909	0.00	0.00	35.20	3.27
5590	6717	6.923508	TGACGCATTGATTAGTATCTTAGGTG	59.076	38.462	0.00	0.00	0.00	4.00
5595	6722	7.715249	GCATTGATTAGTATCTTAGGTGTCCAA	59.285	37.037	0.00	0.00	0.00	3.53
5634	6761	8.806429	TGCTTCAATAAATCTATGGAAGTTCA	57.194	30.769	5.01	0.00	43.50	3.18
5635	6762	8.896744	TGCTTCAATAAATCTATGGAAGTTCAG	58.103	33.333	5.01	0.00	43.50	3.02
5659	6786	9.561270	CAGTCTGTATTAATACATGGAGATACG	57.439	37.037	24.81	12.37	41.92	3.06
5660	6787	8.244802	AGTCTGTATTAATACATGGAGATACGC	58.755	37.037	24.81	9.61	41.92	4.42
5661	6788	7.488471	GTCTGTATTAATACATGGAGATACGCC	59.512	40.741	24.81	6.58	41.92	5.68
5662	6789	7.177744	TCTGTATTAATACATGGAGATACGCCA	59.822	37.037	24.81	0.00	41.92	5.69
5838	6971	2.253603	CGCAAGCAAAAGCATAAGACC	58.746	47.619	0.00	0.00	0.00	3.85
5900	7033	7.426929	GCATTAGCATACAACTAGCACTAAT	57.573	36.000	0.00	0.00	41.58	1.73
5901	7034	8.534333	GCATTAGCATACAACTAGCACTAATA	57.466	34.615	0.00	0.00	41.58	0.98
5902	7035	9.155975	GCATTAGCATACAACTAGCACTAATAT	57.844	33.333	0.00	0.00	41.58	1.28
6006	7140	3.684788	ACTGGATACTTGCATTCACGAAC	59.315	43.478	0.00	0.00	37.61	3.95
6011	7145	0.893270	CTTGCATTCACGAACCCCCA	60.893	55.000	0.00	0.00	0.00	4.96
6012	7146	1.175983	TTGCATTCACGAACCCCCAC	61.176	55.000	0.00	0.00	0.00	4.61
6013	7147	1.303317	GCATTCACGAACCCCCACT	60.303	57.895	0.00	0.00	0.00	4.00
6014	7148	0.035820	GCATTCACGAACCCCCACTA	60.036	55.000	0.00	0.00	0.00	2.74
6015	7149	1.408266	GCATTCACGAACCCCCACTAT	60.408	52.381	0.00	0.00	0.00	2.12
6016	7150	2.158871	GCATTCACGAACCCCCACTATA	60.159	50.000	0.00	0.00	0.00	1.31
6017	7151	3.463944	CATTCACGAACCCCCACTATAC	58.536	50.000	0.00	0.00	0.00	1.47
6018	7152	1.488390	TCACGAACCCCCACTATACC	58.512	55.000	0.00	0.00	0.00	2.73
6019	7153	1.007479	TCACGAACCCCCACTATACCT	59.993	52.381	0.00	0.00	0.00	3.08
6020	7154	1.138266	CACGAACCCCCACTATACCTG	59.862	57.143	0.00	0.00	0.00	4.00
6021	7155	1.007479	ACGAACCCCCACTATACCTGA	59.993	52.381	0.00	0.00	0.00	3.86
6022	7156	2.326428	CGAACCCCCACTATACCTGAT	58.674	52.381	0.00	0.00	0.00	2.90
6023	7157	2.704065	CGAACCCCCACTATACCTGATT	59.296	50.000	0.00	0.00	0.00	2.57
6024	7158	3.135895	CGAACCCCCACTATACCTGATTT	59.864	47.826	0.00	0.00	0.00	2.17

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
360	361	6.680872	GCCTCTACTTGACTAGCTCGTTAATT	60.681	42.308	0.00	0.00	0.00	1.40
505	506	6.234177	AGAAGAGAACACCAAAACTATCAGG	58.766	40.000	0.00	0.00	0.00	3.86
506	507	7.547370	CCTAGAAGAGAACACCAAAACTATCAG	59.453	40.741	0.00	0.00	0.00	2.90
507	508	7.386851	CCTAGAAGAGAACACCAAAACTATCA	58.613	38.462	0.00	0.00	0.00	2.15
508	509	6.314152	GCCTAGAAGAGAACACCAAAACTATC	59.686	42.308	0.00	0.00	0.00	2.08
509	510	6.174049	GCCTAGAAGAGAACACCAAAACTAT	58.826	40.000	0.00	0.00	0.00	2.12
510	511	5.548406	GCCTAGAAGAGAACACCAAAACTA	58.452	41.667	0.00	0.00	0.00	2.24
511	512	4.390264	GCCTAGAAGAGAACACCAAAACT	58.610	43.478	0.00	0.00	0.00	2.66
515	516	1.968493	ACGCCTAGAAGAGAACACCAA	59.032	47.619	0.00	0.00	0.00	3.67
516	517	1.629043	ACGCCTAGAAGAGAACACCA	58.371	50.000	0.00	0.00	0.00	4.17
517	518	3.863142	TTACGCCTAGAAGAGAACACC	57.137	47.619	0.00	0.00	0.00	4.16
518	519	3.607209	CGTTTACGCCTAGAAGAGAACAC	59.393	47.826	0.00	0.00	0.00	3.32
519	520	3.829948	CGTTTACGCCTAGAAGAGAACA	58.170	45.455	0.00	0.00	0.00	3.18
533	534	1.859080	GGAGCCAATCTAGCGTTTACG	59.141	52.381	0.00	0.00	43.27	3.18
534	535	2.608090	GTGGAGCCAATCTAGCGTTTAC	59.392	50.000	0.00	0.00	34.64	2.01
536	537	1.003118	TGTGGAGCCAATCTAGCGTTT	59.997	47.619	0.00	0.00	34.64	3.60
539	540	1.134699	TCTTGTGGAGCCAATCTAGCG	60.135	52.381	0.00	0.00	34.64	4.26
540	541	2.680339	GTTCTTGTGGAGCCAATCTAGC	59.320	50.000	0.00	0.00	0.00	3.42
541	542	3.937706	CTGTTCTTGTGGAGCCAATCTAG	59.062	47.826	0.00	0.00	0.00	2.43
542	543	3.327757	ACTGTTCTTGTGGAGCCAATCTA	59.672	43.478	0.00	0.00	0.00	1.98
543	544	2.107204	ACTGTTCTTGTGGAGCCAATCT	59.893	45.455	0.00	0.00	0.00	2.40
545	546	2.158623	TGACTGTTCTTGTGGAGCCAAT	60.159	45.455	0.00	0.00	0.00	3.16
546	547	1.211703	TGACTGTTCTTGTGGAGCCAA	59.788	47.619	0.00	0.00	0.00	4.52
547	548	0.836606	TGACTGTTCTTGTGGAGCCA	59.163	50.000	0.00	0.00	0.00	4.75
548	549	1.517242	CTGACTGTTCTTGTGGAGCC	58.483	55.000	0.00	0.00	0.00	4.70
549	550	0.871057	GCTGACTGTTCTTGTGGAGC	59.129	55.000	0.00	0.00	0.00	4.70
550	551	1.202687	TGGCTGACTGTTCTTGTGGAG	60.203	52.381	0.00	0.00	0.00	3.86
552	553	0.947244	GTGGCTGACTGTTCTTGTGG	59.053	55.000	0.00	0.00	0.00	4.17
553	554	1.331756	GTGTGGCTGACTGTTCTTGTG	59.668	52.381	0.00	0.00	0.00	3.33
554	555	1.065491	TGTGTGGCTGACTGTTCTTGT	60.065	47.619	0.00	0.00	0.00	3.16
555	556	1.331756	GTGTGTGGCTGACTGTTCTTG	59.668	52.381	0.00	0.00	0.00	3.02
556	557	1.065491	TGTGTGTGGCTGACTGTTCTT	60.065	47.619	0.00	0.00	0.00	2.52
557	558	0.541392	TGTGTGTGGCTGACTGTTCT	59.459	50.000	0.00	0.00	0.00	3.01
558	559	0.940126	CTGTGTGTGGCTGACTGTTC	59.060	55.000	0.00	0.00	0.00	3.18
560	561	0.179073	GTCTGTGTGTGGCTGACTGT	60.179	55.000	0.00	0.00	33.76	3.55
562	563	1.068083	CGTCTGTGTGTGGCTGACT	59.932	57.895	0.00	0.00	34.19	3.41
563	564	0.031585	TACGTCTGTGTGTGGCTGAC	59.968	55.000	0.00	0.00	0.00	3.51
564	565	0.031585	GTACGTCTGTGTGTGGCTGA	59.968	55.000	0.00	0.00	0.00	4.26
565	566	0.032130	AGTACGTCTGTGTGTGGCTG	59.968	55.000	0.00	0.00	0.00	4.85
567	568	0.031585	TCAGTACGTCTGTGTGTGGC	59.968	55.000	12.62	0.00	43.97	5.01
568	569	1.335964	CCTCAGTACGTCTGTGTGTGG	60.336	57.143	12.62	3.22	43.97	4.17
569	570	1.930817	GCCTCAGTACGTCTGTGTGTG	60.931	57.143	12.62	2.95	43.97	3.82
570	571	0.314302	GCCTCAGTACGTCTGTGTGT	59.686	55.000	12.62	0.00	43.97	3.72
573	574	1.154016	CCGCCTCAGTACGTCTGTG	60.154	63.158	12.62	10.71	43.97	3.66
574	575	1.584380	GACCGCCTCAGTACGTCTGT	61.584	60.000	12.62	0.00	43.97	3.41
575	576	1.136984	GACCGCCTCAGTACGTCTG	59.863	63.158	0.00	0.00	44.85	3.51
577	578	1.154073	GTGACCGCCTCAGTACGTC	60.154	63.158	0.00	0.00	0.00	4.34
579	580	0.377554	CTAGTGACCGCCTCAGTACG	59.622	60.000	0.00	0.00	34.16	3.67
580	581	1.671845	CTCTAGTGACCGCCTCAGTAC	59.328	57.143	0.00	0.00	34.16	2.73
581	582	1.558294	TCTCTAGTGACCGCCTCAGTA	59.442	52.381	0.00	0.00	34.16	2.74
582	583	0.328592	TCTCTAGTGACCGCCTCAGT	59.671	55.000	0.00	0.00	36.45	3.41
583	584	1.021202	CTCTCTAGTGACCGCCTCAG	58.979	60.000	0.00	0.00	0.00	3.35
585	586	0.394625	ACCTCTCTAGTGACCGCCTC	60.395	60.000	0.00	0.00	0.00	4.70
586	587	0.039911	AACCTCTCTAGTGACCGCCT	59.960	55.000	0.00	0.00	0.00	5.52
587	588	0.173708	CAACCTCTCTAGTGACCGCC	59.826	60.000	0.00	0.00	0.00	6.13
588	589	0.458716	GCAACCTCTCTAGTGACCGC	60.459	60.000	0.00	0.00	0.00	5.68
589	590	1.178276	AGCAACCTCTCTAGTGACCG	58.822	55.000	0.00	0.00	0.00	4.79
590	591	2.354203	CCAAGCAACCTCTCTAGTGACC	60.354	54.545	0.00	0.00	0.00	4.02
591	592	2.933056	GCCAAGCAACCTCTCTAGTGAC	60.933	54.545	0.00	0.00	0.00	3.67
592	593	1.276421	GCCAAGCAACCTCTCTAGTGA	59.724	52.381	0.00	0.00	0.00	3.41
593	594	1.731720	GCCAAGCAACCTCTCTAGTG	58.268	55.000	0.00	0.00	0.00	2.74
594	595	0.247736	CGCCAAGCAACCTCTCTAGT	59.752	55.000	0.00	0.00	0.00	2.57
595	596	0.460987	CCGCCAAGCAACCTCTCTAG	60.461	60.000	0.00	0.00	0.00	2.43
596	597	1.192146	ACCGCCAAGCAACCTCTCTA	61.192	55.000	0.00	0.00	0.00	2.43
597	598	2.348998	CCGCCAAGCAACCTCTCT	59.651	61.111	0.00	0.00	0.00	3.10
600	601	2.281484	TCACCGCCAAGCAACCTC	60.281	61.111	0.00	0.00	0.00	3.85
601	602	2.281761	CTCACCGCCAAGCAACCT	60.282	61.111	0.00	0.00	0.00	3.50
602	603	4.043200	GCTCACCGCCAAGCAACC	62.043	66.667	0.00	0.00	38.42	3.77
603	604	3.286751	TGCTCACCGCCAAGCAAC	61.287	61.111	1.91	0.00	45.09	4.17
606	607	0.744414	TTAGATGCTCACCGCCAAGC	60.744	55.000	0.00	0.00	38.05	4.01
608	609	1.277842	TCTTTAGATGCTCACCGCCAA	59.722	47.619	0.00	0.00	38.05	4.52
610	611	1.576356	CTCTTTAGATGCTCACCGCC	58.424	55.000	0.00	0.00	38.05	6.13
612	613	1.134699	TGGCTCTTTAGATGCTCACCG	60.135	52.381	0.00	0.00	0.00	4.94
613	614	2.698855	TGGCTCTTTAGATGCTCACC	57.301	50.000	0.00	0.00	0.00	4.02
614	615	3.801698	TCATGGCTCTTTAGATGCTCAC	58.198	45.455	0.00	0.00	0.00	3.51
615	616	3.743584	GCTCATGGCTCTTTAGATGCTCA	60.744	47.826	0.00	0.00	38.06	4.26
616	617	2.807392	GCTCATGGCTCTTTAGATGCTC	59.193	50.000	0.00	0.00	38.06	4.26
617	618	2.486907	GGCTCATGGCTCTTTAGATGCT	60.487	50.000	6.20	0.00	41.46	3.79
618	619	1.878734	GGCTCATGGCTCTTTAGATGC	59.121	52.381	6.20	0.00	41.46	3.91
619	620	2.502295	GGGCTCATGGCTCTTTAGATG	58.498	52.381	6.20	0.00	38.65	2.90
620	621	1.423161	GGGGCTCATGGCTCTTTAGAT	59.577	52.381	6.09	0.00	42.10	1.98
621	622	0.839946	GGGGCTCATGGCTCTTTAGA	59.160	55.000	6.09	0.00	42.10	2.10
622	623	0.179006	GGGGGCTCATGGCTCTTTAG	60.179	60.000	6.09	0.00	42.10	1.85
623	624	0.918799	TGGGGGCTCATGGCTCTTTA	60.919	55.000	6.09	0.00	42.10	1.85
624	625	1.803453	TTGGGGGCTCATGGCTCTTT	61.803	55.000	6.09	0.00	42.10	2.52
626	627	1.803453	TTTTGGGGGCTCATGGCTCT	61.803	55.000	6.09	0.00	42.10	4.09
627	628	1.305213	TTTTGGGGGCTCATGGCTC	60.305	57.895	6.20	2.29	41.61	4.70
628	629	1.610379	GTTTTGGGGGCTCATGGCT	60.610	57.895	6.20	0.00	41.46	4.75
629	630	2.981302	GTTTTGGGGGCTCATGGC	59.019	61.111	0.00	0.00	40.90	4.40
630	631	2.350458	CCGTTTTGGGGGCTCATGG	61.350	63.158	0.00	0.00	0.00	3.66
631	632	0.322997	TACCGTTTTGGGGGCTCATG	60.323	55.000	0.00	0.00	44.64	3.07
632	633	0.034477	CTACCGTTTTGGGGGCTCAT	60.034	55.000	0.00	0.00	44.64	2.90
633	634	1.128809	TCTACCGTTTTGGGGGCTCA	61.129	55.000	0.00	0.00	44.64	4.26
634	635	0.255033	ATCTACCGTTTTGGGGGCTC	59.745	55.000	0.00	0.00	44.64	4.70
635	636	1.211212	GTATCTACCGTTTTGGGGGCT	59.789	52.381	0.00	0.00	44.64	5.19
637	638	1.481772	TCGTATCTACCGTTTTGGGGG	59.518	52.381	0.00	0.00	44.64	5.40
638	639	2.965572	TCGTATCTACCGTTTTGGGG	57.034	50.000	0.00	0.00	44.64	4.96
639	640	3.800506	GTGATCGTATCTACCGTTTTGGG	59.199	47.826	0.00	0.00	44.64	4.12
640	641	4.679662	AGTGATCGTATCTACCGTTTTGG	58.320	43.478	0.00	0.00	46.41	3.28
641	642	5.337554	TGAGTGATCGTATCTACCGTTTTG	58.662	41.667	0.00	0.00	0.00	2.44
642	643	5.571784	TGAGTGATCGTATCTACCGTTTT	57.428	39.130	0.00	0.00	0.00	2.43
643	644	5.520632	CATGAGTGATCGTATCTACCGTTT	58.479	41.667	0.00	0.00	0.00	3.60
644	645	4.556898	GCATGAGTGATCGTATCTACCGTT	60.557	45.833	0.00	0.00	0.00	4.44
646	647	3.493272	GCATGAGTGATCGTATCTACCG	58.507	50.000	0.00	0.00	0.00	4.02
647	648	3.493272	CGCATGAGTGATCGTATCTACC	58.507	50.000	0.00	0.00	0.00	3.18
648	649	3.188667	TCCGCATGAGTGATCGTATCTAC	59.811	47.826	0.00	0.00	0.00	2.59
649	650	3.188667	GTCCGCATGAGTGATCGTATCTA	59.811	47.826	0.00	0.00	0.00	1.98
650	651	2.030717	GTCCGCATGAGTGATCGTATCT	60.031	50.000	0.00	0.00	0.00	1.98
651	652	2.030717	AGTCCGCATGAGTGATCGTATC	60.031	50.000	0.00	0.00	0.00	2.24
652	653	1.957177	AGTCCGCATGAGTGATCGTAT	59.043	47.619	0.00	0.00	0.00	3.06
653	654	1.065551	CAGTCCGCATGAGTGATCGTA	59.934	52.381	0.00	0.00	45.72	3.43
654	655	0.179127	CAGTCCGCATGAGTGATCGT	60.179	55.000	0.00	0.00	45.72	3.73
655	656	1.485838	GCAGTCCGCATGAGTGATCG	61.486	60.000	11.26	0.00	45.72	3.69
656	657	1.156645	GGCAGTCCGCATGAGTGATC	61.157	60.000	11.26	0.00	45.72	2.92
657	658	1.153289	GGCAGTCCGCATGAGTGAT	60.153	57.895	11.26	0.00	45.72	3.06
658	659	2.265739	GGCAGTCCGCATGAGTGA	59.734	61.111	11.26	0.00	45.72	3.41
668	669	0.739561	AATCTAGACGTCGGCAGTCC	59.260	55.000	10.46	0.00	39.31	3.85
669	670	1.534175	CCAATCTAGACGTCGGCAGTC	60.534	57.143	10.46	4.22	38.81	3.51
670	671	0.456221	CCAATCTAGACGTCGGCAGT	59.544	55.000	10.46	0.00	0.00	4.40
673	674	1.591863	GGCCAATCTAGACGTCGGC	60.592	63.158	18.26	18.26	38.85	5.54
674	675	0.460311	AAGGCCAATCTAGACGTCGG	59.540	55.000	10.46	7.56	0.00	4.79
677	678	0.460284	CGCAAGGCCAATCTAGACGT	60.460	55.000	5.01	0.00	0.00	4.34
678	679	0.179111	TCGCAAGGCCAATCTAGACG	60.179	55.000	5.01	0.00	38.47	4.18
679	680	1.869767	CATCGCAAGGCCAATCTAGAC	59.130	52.381	5.01	0.00	38.47	2.59
682	683	1.209261	TGTCATCGCAAGGCCAATCTA	59.791	47.619	5.01	0.00	38.47	1.98
683	684	0.035152	TGTCATCGCAAGGCCAATCT	60.035	50.000	5.01	0.00	38.47	2.40
684	685	0.099436	GTGTCATCGCAAGGCCAATC	59.901	55.000	5.01	0.00	38.47	2.67
686	687	0.821301	TTGTGTCATCGCAAGGCCAA	60.821	50.000	5.01	0.00	38.84	4.52
687	688	1.228094	TTGTGTCATCGCAAGGCCA	60.228	52.632	5.01	0.00	38.84	5.36
688	689	3.667087	TTGTGTCATCGCAAGGCC	58.333	55.556	0.00	0.00	38.84	5.19
692	693	2.351641	GGCAATTCTTGTGTCATCGCAA	60.352	45.455	0.00	0.00	41.01	4.85
693	694	1.199789	GGCAATTCTTGTGTCATCGCA	59.800	47.619	0.00	0.00	0.00	5.10
696	697	3.444742	TCATGGGCAATTCTTGTGTCATC	59.555	43.478	0.00	0.00	0.00	2.92
697	698	3.433343	TCATGGGCAATTCTTGTGTCAT	58.567	40.909	0.00	0.00	0.00	3.06
698	699	2.821378	CTCATGGGCAATTCTTGTGTCA	59.179	45.455	0.00	0.00	0.00	3.58
701	702	1.134907	GGCTCATGGGCAATTCTTGTG	60.135	52.381	21.47	0.00	40.53	3.33
702	703	1.188863	GGCTCATGGGCAATTCTTGT	58.811	50.000	21.47	0.00	40.53	3.16
703	704	0.462789	GGGCTCATGGGCAATTCTTG	59.537	55.000	21.47	0.00	42.84	3.02
704	705	0.688749	GGGGCTCATGGGCAATTCTT	60.689	55.000	21.47	0.00	42.84	2.52
705	706	1.075748	GGGGCTCATGGGCAATTCT	60.076	57.895	21.47	0.00	42.84	2.40
707	708	2.041612	GGGGGCTCATGGGCAATT	60.042	61.111	21.47	0.00	42.84	2.32
708	709	2.474133	TTTGGGGGCTCATGGGCAAT	62.474	55.000	21.47	0.00	42.84	3.56
709	710	2.686246	TTTTGGGGGCTCATGGGCAA	62.686	55.000	21.47	1.19	42.84	4.52
710	711	3.171535	TTTTGGGGGCTCATGGGCA	62.172	57.895	21.47	0.00	42.84	5.36
711	712	2.284552	TTTTGGGGGCTCATGGGC	60.285	61.111	9.80	9.80	40.05	5.36
713	714	0.321346	GTTGTTTTGGGGGCTCATGG	59.679	55.000	0.00	0.00	0.00	3.66
714	715	1.341080	AGTTGTTTTGGGGGCTCATG	58.659	50.000	0.00	0.00	0.00	3.07
716	717	1.816183	CGTAGTTGTTTTGGGGGCTCA	60.816	52.381	0.00	0.00	0.00	4.26
717	718	0.879090	CGTAGTTGTTTTGGGGGCTC	59.121	55.000	0.00	0.00	0.00	4.70
718	719	0.475044	TCGTAGTTGTTTTGGGGGCT	59.525	50.000	0.00	0.00	0.00	5.19
720	721	2.486592	GACATCGTAGTTGTTTTGGGGG	59.513	50.000	0.00	0.00	0.00	5.40
722	723	3.061322	TCGACATCGTAGTTGTTTTGGG	58.939	45.455	0.54	0.00	40.80	4.12
723	724	4.387559	TGATCGACATCGTAGTTGTTTTGG	59.612	41.667	0.54	0.00	40.80	3.28
725	726	4.986034	TGTGATCGACATCGTAGTTGTTTT	59.014	37.500	0.54	0.00	40.80	2.43
727	728	3.918591	GTGTGATCGACATCGTAGTTGTT	59.081	43.478	0.54	0.00	40.80	2.83
728	729	3.057806	TGTGTGATCGACATCGTAGTTGT	60.058	43.478	0.54	0.00	40.80	3.32
729	730	3.498082	TGTGTGATCGACATCGTAGTTG	58.502	45.455	0.54	0.00	40.80	3.16
730	731	3.842732	TGTGTGATCGACATCGTAGTT	57.157	42.857	0.54	0.00	40.80	2.24
731	732	4.371855	AATGTGTGATCGACATCGTAGT	57.628	40.909	9.88	0.00	40.80	2.73
732	733	5.511571	AGTAATGTGTGATCGACATCGTAG	58.488	41.667	9.88	0.00	40.80	3.51
733	734	5.494632	AGTAATGTGTGATCGACATCGTA	57.505	39.130	9.88	0.00	40.80	3.43
734	735	4.371855	AGTAATGTGTGATCGACATCGT	57.628	40.909	9.88	0.53	40.80	3.73
736	737	7.987268	TTTCTAGTAATGTGTGATCGACATC	57.013	36.000	9.88	1.05	36.78	3.06
737	738	8.771920	TTTTTCTAGTAATGTGTGATCGACAT	57.228	30.769	4.69	4.69	36.78	3.06
738	739	8.771920	ATTTTTCTAGTAATGTGTGATCGACA	57.228	30.769	0.00	0.22	0.00	4.35
749	750	9.398170	CGCCCATGATTTATTTTTCTAGTAATG	57.602	33.333	0.00	0.00	0.00	1.90
750	751	8.576442	CCGCCCATGATTTATTTTTCTAGTAAT	58.424	33.333	0.00	0.00	0.00	1.89
752	753	7.012894	CACCGCCCATGATTTATTTTTCTAGTA	59.987	37.037	0.00	0.00	0.00	1.82
754	755	6.039270	TCACCGCCCATGATTTATTTTTCTAG	59.961	38.462	0.00	0.00	0.00	2.43
755	756	5.888724	TCACCGCCCATGATTTATTTTTCTA	59.111	36.000	0.00	0.00	0.00	2.10
756	757	4.709397	TCACCGCCCATGATTTATTTTTCT	59.291	37.500	0.00	0.00	0.00	2.52
758	759	5.600696	GATCACCGCCCATGATTTATTTTT	58.399	37.500	0.00	0.00	36.92	1.94
759	760	4.261572	CGATCACCGCCCATGATTTATTTT	60.262	41.667	0.00	0.00	36.92	1.82
760	761	3.253188	CGATCACCGCCCATGATTTATTT	59.747	43.478	0.00	0.00	36.92	1.40
762	763	2.038426	TCGATCACCGCCCATGATTTAT	59.962	45.455	0.00	0.00	36.92	1.40
763	764	1.414550	TCGATCACCGCCCATGATTTA	59.585	47.619	0.00	0.00	36.92	1.40
764	765	0.180171	TCGATCACCGCCCATGATTT	59.820	50.000	0.00	0.00	36.92	2.17
765	766	0.250038	CTCGATCACCGCCCATGATT	60.250	55.000	0.00	0.00	36.92	2.57
766	767	1.368950	CTCGATCACCGCCCATGAT	59.631	57.895	0.00	0.00	39.54	2.45
767	768	2.814604	CTCGATCACCGCCCATGA	59.185	61.111	0.00	0.00	38.37	3.07
768	769	2.087462	TAGCTCGATCACCGCCCATG	62.087	60.000	0.00	0.00	38.37	3.66
769	770	1.399744	TTAGCTCGATCACCGCCCAT	61.400	55.000	0.00	0.00	38.37	4.00
770	771	1.399744	ATTAGCTCGATCACCGCCCA	61.400	55.000	0.00	0.00	38.37	5.36
772	773	2.433868	TTATTAGCTCGATCACCGCC	57.566	50.000	0.00	0.00	38.37	6.13
773	774	3.184581	CCTTTTATTAGCTCGATCACCGC	59.815	47.826	0.00	0.00	38.37	5.68
774	775	4.369182	ACCTTTTATTAGCTCGATCACCG	58.631	43.478	0.00	0.00	40.25	4.94
776	777	4.085004	GCGACCTTTTATTAGCTCGATCAC	60.085	45.833	0.00	0.00	0.00	3.06
777	778	4.049186	GCGACCTTTTATTAGCTCGATCA	58.951	43.478	0.00	0.00	0.00	2.92
778	779	3.429207	GGCGACCTTTTATTAGCTCGATC	59.571	47.826	0.00	0.00	0.00	3.69
779	780	3.069729	AGGCGACCTTTTATTAGCTCGAT	59.930	43.478	0.00	0.00	0.00	3.59
780	781	2.429610	AGGCGACCTTTTATTAGCTCGA	59.570	45.455	0.00	0.00	0.00	4.04
782	783	3.793559	TGAGGCGACCTTTTATTAGCTC	58.206	45.455	0.00	0.00	31.76	4.09
783	784	3.906720	TGAGGCGACCTTTTATTAGCT	57.093	42.857	0.00	0.00	31.76	3.32
784	785	4.957759	TTTGAGGCGACCTTTTATTAGC	57.042	40.909	0.00	0.00	31.76	3.09
787	788	8.747538	ATATACTTTTGAGGCGACCTTTTATT	57.252	30.769	0.00	0.00	31.76	1.40
788	789	8.747538	AATATACTTTTGAGGCGACCTTTTAT	57.252	30.769	0.00	0.00	31.76	1.40
789	790	8.570068	AAATATACTTTTGAGGCGACCTTTTA	57.430	30.769	0.00	0.00	31.76	1.52
792	793	6.657541	TCAAAATATACTTTTGAGGCGACCTT	59.342	34.615	14.08	0.00	41.74	3.50
793	794	6.177610	TCAAAATATACTTTTGAGGCGACCT	58.822	36.000	14.08	0.00	41.74	3.85
794	795	6.431198	TCAAAATATACTTTTGAGGCGACC	57.569	37.500	14.08	0.00	41.74	4.79
822	823	9.132521	CGTGCATGATTTTATCTTTCTTTTTCT	57.867	29.630	0.00	0.00	0.00	2.52
823	824	7.894753	GCGTGCATGATTTTATCTTTCTTTTTC	59.105	33.333	10.93	0.00	0.00	2.29
824	825	7.384660	TGCGTGCATGATTTTATCTTTCTTTTT	59.615	29.630	10.93	0.00	0.00	1.94
825	826	6.867816	TGCGTGCATGATTTTATCTTTCTTTT	59.132	30.769	10.93	0.00	0.00	2.27
827	828	5.953183	TGCGTGCATGATTTTATCTTTCTT	58.047	33.333	10.93	0.00	0.00	2.52
829	830	5.572211	TCTGCGTGCATGATTTTATCTTTC	58.428	37.500	10.93	0.00	0.00	2.62
830	831	5.565592	TCTGCGTGCATGATTTTATCTTT	57.434	34.783	10.93	0.00	0.00	2.52
832	833	6.652062	TCATATCTGCGTGCATGATTTTATCT	59.348	34.615	10.93	0.00	0.00	1.98
834	835	6.205270	TGTCATATCTGCGTGCATGATTTTAT	59.795	34.615	10.93	0.00	30.63	1.40
836	837	4.336153	TGTCATATCTGCGTGCATGATTTT	59.664	37.500	10.93	0.00	30.63	1.82
837	838	3.878699	TGTCATATCTGCGTGCATGATTT	59.121	39.130	10.93	0.00	30.63	2.17
838	839	3.469739	TGTCATATCTGCGTGCATGATT	58.530	40.909	10.93	0.00	30.63	2.57
839	840	3.116079	TGTCATATCTGCGTGCATGAT	57.884	42.857	10.93	5.01	30.63	2.45
840	841	2.600470	TGTCATATCTGCGTGCATGA	57.400	45.000	10.93	0.00	0.00	3.07
842	843	4.261322	GGAATTTGTCATATCTGCGTGCAT	60.261	41.667	0.00	0.00	0.00	3.96
845	846	5.490139	AAGGAATTTGTCATATCTGCGTG	57.510	39.130	0.00	0.00	0.00	5.34
846	847	6.515272	AAAAGGAATTTGTCATATCTGCGT	57.485	33.333	0.00	0.00	0.00	5.24
847	848	6.237648	GCAAAAAGGAATTTGTCATATCTGCG	60.238	38.462	2.21	0.00	41.34	5.18
849	850	8.537049	TTGCAAAAAGGAATTTGTCATATCTG	57.463	30.769	0.00	0.00	41.34	2.90
850	851	7.820872	CCTTGCAAAAAGGAATTTGTCATATCT	59.179	33.333	0.00	0.00	41.34	1.98
851	852	7.603784	ACCTTGCAAAAAGGAATTTGTCATATC	59.396	33.333	9.96	0.00	41.34	1.63
854	855	5.683681	ACCTTGCAAAAAGGAATTTGTCAT	58.316	33.333	9.96	0.00	41.34	3.06
856	857	5.006649	GTGACCTTGCAAAAAGGAATTTGTC	59.993	40.000	9.96	0.00	41.34	3.18
857	858	4.875536	GTGACCTTGCAAAAAGGAATTTGT	59.124	37.500	9.96	0.00	41.34	2.83
858	859	4.025813	CGTGACCTTGCAAAAAGGAATTTG	60.026	41.667	9.96	0.00	42.01	2.32
859	860	4.119136	CGTGACCTTGCAAAAAGGAATTT	58.881	39.130	9.96	0.00	39.81	1.82
860	861	3.383185	TCGTGACCTTGCAAAAAGGAATT	59.617	39.130	9.96	0.00	39.81	2.17
861	862	2.955660	TCGTGACCTTGCAAAAAGGAAT	59.044	40.909	9.96	0.00	39.81	3.01
862	863	2.357637	CTCGTGACCTTGCAAAAAGGAA	59.642	45.455	9.96	0.00	39.81	3.36
863	864	1.946768	CTCGTGACCTTGCAAAAAGGA	59.053	47.619	9.96	2.04	39.81	3.36
864	865	1.001378	CCTCGTGACCTTGCAAAAAGG	60.001	52.381	0.00	0.00	43.05	3.11
867	868	1.452145	GGCCTCGTGACCTTGCAAAA	61.452	55.000	0.00	0.00	0.00	2.44
868	869	1.896660	GGCCTCGTGACCTTGCAAA	60.897	57.895	0.00	0.00	0.00	3.68
869	870	2.281484	GGCCTCGTGACCTTGCAA	60.281	61.111	0.00	0.00	0.00	4.08
872	873	1.841663	CGTTTGGCCTCGTGACCTTG	61.842	60.000	3.32	0.00	0.00	3.61
875	876	1.161563	TTTCGTTTGGCCTCGTGACC	61.162	55.000	3.32	0.00	0.00	4.02
877	878	0.941542	CTTTTCGTTTGGCCTCGTGA	59.058	50.000	3.32	0.00	0.00	4.35
879	880	1.652563	GCTTTTCGTTTGGCCTCGT	59.347	52.632	3.32	0.00	0.00	4.18
880	881	1.081442	GGCTTTTCGTTTGGCCTCG	60.081	57.895	3.32	6.77	41.20	4.63
886	887	6.200665	TGAAAATGATCAAGGCTTTTCGTTTG	59.799	34.615	19.88	1.76	39.37	2.93
887	888	6.279882	TGAAAATGATCAAGGCTTTTCGTTT	58.720	32.000	19.71	16.06	39.37	3.60
888	889	5.841810	TGAAAATGATCAAGGCTTTTCGTT	58.158	33.333	19.71	2.81	39.37	3.85
889	890	5.452078	TGAAAATGATCAAGGCTTTTCGT	57.548	34.783	19.71	0.00	39.37	3.85
890	891	5.164158	CGTTGAAAATGATCAAGGCTTTTCG	60.164	40.000	19.71	10.48	39.84	3.46
891	892	5.119125	CCGTTGAAAATGATCAAGGCTTTTC	59.881	40.000	18.86	18.86	41.50	2.29
892	893	4.990426	CCGTTGAAAATGATCAAGGCTTTT	59.010	37.500	0.00	1.59	41.50	2.27
894	895	3.826157	TCCGTTGAAAATGATCAAGGCTT	59.174	39.130	0.00	0.00	41.50	4.35
895	896	3.420893	TCCGTTGAAAATGATCAAGGCT	58.579	40.909	0.00	0.00	41.50	4.58
897	898	5.355071	TCTCATCCGTTGAAAATGATCAAGG	59.645	40.000	0.00	6.50	39.84	3.61
898	899	6.426980	TCTCATCCGTTGAAAATGATCAAG	57.573	37.500	0.00	0.00	39.84	3.02
904	905	5.032863	GCTTCATCTCATCCGTTGAAAATG	58.967	41.667	0.00	0.00	32.78	2.32
907	908	3.009723	GGCTTCATCTCATCCGTTGAAA	58.990	45.455	0.00	0.00	32.78	2.69
933	934	4.833380	CGGAGATATGGGGAAGAAGAAGTA	59.167	45.833	0.00	0.00	0.00	2.24
934	935	3.643792	CGGAGATATGGGGAAGAAGAAGT	59.356	47.826	0.00	0.00	0.00	3.01
968	969	6.075315	TGTTGCCCTGCTCTCTATAACTATA	58.925	40.000	0.00	0.00	0.00	1.31
969	970	4.901849	TGTTGCCCTGCTCTCTATAACTAT	59.098	41.667	0.00	0.00	0.00	2.12
970	971	4.286707	TGTTGCCCTGCTCTCTATAACTA	58.713	43.478	0.00	0.00	0.00	2.24
971	972	3.107601	TGTTGCCCTGCTCTCTATAACT	58.892	45.455	0.00	0.00	0.00	2.24
972	973	3.543680	TGTTGCCCTGCTCTCTATAAC	57.456	47.619	0.00	0.00	0.00	1.89
973	974	3.263170	TGTTGTTGCCCTGCTCTCTATAA	59.737	43.478	0.00	0.00	0.00	0.98
990	991	7.312415	AGTAGGGAGTAGTATGTTTTGTTGT	57.688	36.000	0.00	0.00	0.00	3.32
996	999	5.503927	TGACGAGTAGGGAGTAGTATGTTT	58.496	41.667	0.00	0.00	0.00	2.83
1008	1011	0.394488	TGGAGCTCTGACGAGTAGGG	60.394	60.000	14.64	0.00	39.53	3.53
1311	1328	0.596082	GAGCTAGACTGATCTCCCGC	59.404	60.000	0.00	0.00	36.29	6.13
1333	1350	2.394563	GGGCGAGCAAAGAGAGCAC	61.395	63.158	0.00	0.00	0.00	4.40
1336	1353	1.518133	CGAGGGCGAGCAAAGAGAG	60.518	63.158	0.00	0.00	40.82	3.20
1370	1387	4.513680	CCCTTCCACCCCATAGAGATCTAT	60.514	50.000	0.00	0.00	39.61	1.98
1379	1396	1.344701	GGAGTACCCTTCCACCCCATA	60.345	57.143	0.00	0.00	34.74	2.74
1385	1402	1.913419	TGGATTGGAGTACCCTTCCAC	59.087	52.381	15.24	3.18	44.13	4.02
1390	1407	1.080498	TGGACTGGATTGGAGTACCCT	59.920	52.381	0.00	0.00	35.38	4.34
1412	1429	2.041701	GATGGATTTGATTGGGGTGGG	58.958	52.381	0.00	0.00	0.00	4.61
1448	1465	4.641645	TGGTGCTTCCACAGGCCG	62.642	66.667	0.00	0.00	43.88	6.13
1484	1506	4.717280	CCCAAGTAAAGTATCCTCTGGAGT	59.283	45.833	0.00	0.00	34.05	3.85
1526	1548	1.471119	TCCTAGACCTACGGCACAAG	58.529	55.000	0.00	0.00	0.00	3.16
1529	1551	3.484407	TCTTATCCTAGACCTACGGCAC	58.516	50.000	0.00	0.00	0.00	5.01
1583	1605	1.074951	CTTTTCCCCGGAGCAAGGT	59.925	57.895	0.73	0.00	0.00	3.50
1584	1606	1.678970	CCTTTTCCCCGGAGCAAGG	60.679	63.158	0.73	5.08	33.18	3.61
1585	1607	1.678970	CCCTTTTCCCCGGAGCAAG	60.679	63.158	0.73	0.00	0.00	4.01
1586	1608	2.438795	CCCTTTTCCCCGGAGCAA	59.561	61.111	0.73	0.00	0.00	3.91
1587	1609	3.657350	CCCCTTTTCCCCGGAGCA	61.657	66.667	0.73	0.00	0.00	4.26
1588	1610	4.442454	CCCCCTTTTCCCCGGAGC	62.442	72.222	0.73	0.00	0.00	4.70
1589	1611	4.442454	GCCCCCTTTTCCCCGGAG	62.442	72.222	0.73	0.00	0.00	4.63
1661	1689	1.802069	AAGAAAAGACAGAGCCGAGC	58.198	50.000	0.00	0.00	0.00	5.03
1662	1690	6.402658	GGAAATAAAGAAAAGACAGAGCCGAG	60.403	42.308	0.00	0.00	0.00	4.63
1664	1692	5.412904	AGGAAATAAAGAAAAGACAGAGCCG	59.587	40.000	0.00	0.00	0.00	5.52
1687	1715	1.261238	AAAGAGGGCCTGTCCGAGAG	61.261	60.000	12.95	0.00	34.94	3.20
1688	1716	0.836400	AAAAGAGGGCCTGTCCGAGA	60.836	55.000	12.95	0.00	34.94	4.04
1689	1717	0.036875	AAAAAGAGGGCCTGTCCGAG	59.963	55.000	12.95	0.00	34.94	4.63
1706	1734	3.096092	CCCCCTTCCATTCGAATGAAAA	58.904	45.455	34.21	25.39	38.70	2.29
1707	1735	2.733956	CCCCCTTCCATTCGAATGAAA	58.266	47.619	34.21	22.90	38.70	2.69
1708	1736	1.684869	GCCCCCTTCCATTCGAATGAA	60.685	52.381	34.21	24.19	38.70	2.57
1712	1740	1.217916	TATGCCCCCTTCCATTCGAA	58.782	50.000	0.00	0.00	0.00	3.71
1714	1742	1.202927	ACATATGCCCCCTTCCATTCG	60.203	52.381	1.58	0.00	0.00	3.34
1716	1744	3.063650	ACTACATATGCCCCCTTCCATT	58.936	45.455	1.58	0.00	0.00	3.16
1717	1745	2.718456	ACTACATATGCCCCCTTCCAT	58.282	47.619	1.58	0.00	0.00	3.41
1718	1746	2.206322	ACTACATATGCCCCCTTCCA	57.794	50.000	1.58	0.00	0.00	3.53
1803	1832	4.968626	TCTTATGTTAACATGCACGCTTG	58.031	39.130	27.62	10.56	37.15	4.01
1804	1833	5.621197	TTCTTATGTTAACATGCACGCTT	57.379	34.783	27.62	5.42	37.15	4.68
1822	1851	7.518370	CGCCGCTAGTTACAAAATATCATTCTT	60.518	37.037	0.00	0.00	0.00	2.52
1829	1858	2.546789	GGCGCCGCTAGTTACAAAATAT	59.453	45.455	12.58	0.00	0.00	1.28
1851	1880	3.000080	GCAACGCCGTCAGTCGAAG	62.000	63.158	0.00	0.00	42.86	3.79
1883	1924	4.558898	GCTAGAATCCACGATTGTACGGAT	60.559	45.833	0.00	0.00	40.01	4.18
1889	1930	2.165641	TCACGCTAGAATCCACGATTGT	59.834	45.455	0.00	0.00	31.89	2.71
1953	1994	1.759459	GCTATTAGCTGAGGCGGGGT	61.759	60.000	8.47	0.00	44.37	4.95
1960	2001	2.799412	CGAAGCTTGGCTATTAGCTGAG	59.201	50.000	15.02	13.17	46.53	3.35
2092	2133	0.039618	TTTCATGGTCCTTGAGGCCC	59.960	55.000	0.00	0.00	32.79	5.80
2263	2312	7.781324	TCAGTAGATAGCAATGACATATCCA	57.219	36.000	0.00	0.00	0.00	3.41
2264	2313	9.964303	CTATCAGTAGATAGCAATGACATATCC	57.036	37.037	0.09	0.00	45.16	2.59
2344	2479	8.450578	TTTCCCATCATCATACTCATGTAAAC	57.549	34.615	0.00	0.00	33.57	2.01
2709	2858	7.595819	ATCAACCAAATACCACAAAAGAAGA	57.404	32.000	0.00	0.00	0.00	2.87
2790	2940	5.962433	TGACATAGCACTACCACTTTCTAC	58.038	41.667	0.00	0.00	0.00	2.59
2812	2962	2.129607	GTTTGCACACTGAATTGCCTG	58.870	47.619	0.00	0.00	38.00	4.85
2858	3008	5.817296	TGTGTTACAAGATCAGGATATGCAC	59.183	40.000	0.00	0.00	0.00	4.57
2921	3071	2.169352	GCAGTCTGGAAGCTCATAAGGA	59.831	50.000	1.14	0.00	0.00	3.36
2922	3072	2.559440	GCAGTCTGGAAGCTCATAAGG	58.441	52.381	1.14	0.00	0.00	2.69
3082	3237	5.490139	ACACAGACACTTTCTTGACATTG	57.510	39.130	0.00	0.00	28.96	2.82
3295	3460	6.869913	TGAAAATACCCAGTACAGAACTTACG	59.130	38.462	0.00	0.00	35.76	3.18
3395	3561	6.991938	TGCAGCAATAATAAGTCCAAAAGTT	58.008	32.000	0.00	0.00	0.00	2.66
3399	3565	5.709631	TGACTGCAGCAATAATAAGTCCAAA	59.290	36.000	15.27	0.00	34.49	3.28
3484	3719	3.780902	CAAACCCTGAAGAAACACCAAC	58.219	45.455	0.00	0.00	0.00	3.77
3798	4605	8.549548	CAGCAGTCTCTTGATTTGATATTACAG	58.450	37.037	0.00	0.00	0.00	2.74
3877	4684	6.200475	CCATGATCATAGCATAATCTAGTGCG	59.800	42.308	8.15	0.00	45.69	5.34
3902	4709	8.732746	ATTCTCTTGGTGGTAAACATGTATAC	57.267	34.615	0.00	0.00	0.00	1.47
3911	4718	7.388437	ACGTAATGTATTCTCTTGGTGGTAAA	58.612	34.615	0.00	0.00	0.00	2.01
3967	4775	4.613394	CGGTACATACGGAAACCCAAAAAC	60.613	45.833	0.00	0.00	0.00	2.43
3990	4799	5.925969	CACTTGAACATATTTCCCAACCAAC	59.074	40.000	0.00	0.00	0.00	3.77
4058	4877	3.054878	GGCAAACAATTTCAGTGCAGAG	58.945	45.455	0.00	0.00	36.93	3.35
4223	5069	8.358895	TGCAATTGATACTTGAAGATTTGACAA	58.641	29.630	10.34	0.00	0.00	3.18
4363	5210	1.154150	GCAACACAGATGAAGCGGC	60.154	57.895	0.00	0.00	0.00	6.53
4741	5589	2.362503	TCCTCGTCCATGGCGACT	60.363	61.111	22.05	0.00	34.47	4.18
4742	5590	2.105128	CTCCTCGTCCATGGCGAC	59.895	66.667	22.05	9.86	34.47	5.19
4760	5608	4.080919	CCATTGAACTATCACCTGACTGGA	60.081	45.833	5.22	0.00	39.71	3.86
4848	5696	5.357257	TCTTTATTTATCTCACAGGCGTCC	58.643	41.667	0.00	0.00	0.00	4.79
4931	5779	1.278985	CAGATGACAGTAAGGTGGGCA	59.721	52.381	0.00	0.00	0.00	5.36
4937	5785	3.493350	CGATTCCCCAGATGACAGTAAGG	60.493	52.174	0.00	0.00	0.00	2.69
4959	5808	3.858238	GGTTACGACTTACATCAGCAGAC	59.142	47.826	0.00	0.00	0.00	3.51
4967	5816	3.665745	ACCAACGGTTACGACTTACAT	57.334	42.857	0.00	0.00	44.60	2.29
4998	5848	3.077359	AGCACAAAGATACAGACTTGCC	58.923	45.455	0.00	0.00	0.00	4.52
5138	5996	7.310113	TTTCACAGGAAACACTTGGTAACAAAT	60.310	33.333	0.00	0.00	46.44	2.32
5145	6003	3.636764	GGATTTCACAGGAAACACTTGGT	59.363	43.478	0.00	0.00	45.22	3.67
5147	6005	4.916983	TGGATTTCACAGGAAACACTTG	57.083	40.909	0.00	0.00	45.22	3.16
5148	6006	4.262164	GCATGGATTTCACAGGAAACACTT	60.262	41.667	0.00	0.00	45.22	3.16
5167	6025	2.357009	GCCTCCTGAAATGTACTGCATG	59.643	50.000	0.00	0.00	37.96	4.06
5169	6027	1.350684	TGCCTCCTGAAATGTACTGCA	59.649	47.619	0.00	0.00	0.00	4.41
5198	6056	5.336372	CGACTCCAAAATCCCTGCAAAAATA	60.336	40.000	0.00	0.00	0.00	1.40
5214	6333	3.713826	ATAGAAAAAGCCCGACTCCAA	57.286	42.857	0.00	0.00	0.00	3.53
5222	6341	5.476945	TGACTCCAGAAAATAGAAAAAGCCC	59.523	40.000	0.00	0.00	0.00	5.19
5367	6486	9.533831	TGGATGTATCTAGCATTGAGTATAAGA	57.466	33.333	0.00	0.00	0.00	2.10
5377	6496	7.118390	GTCGCTTAAATGGATGTATCTAGCATT	59.882	37.037	0.00	0.00	0.00	3.56
5378	6497	6.591834	GTCGCTTAAATGGATGTATCTAGCAT	59.408	38.462	0.00	0.00	0.00	3.79
5380	6499	5.926542	TGTCGCTTAAATGGATGTATCTAGC	59.073	40.000	0.00	0.00	0.00	3.42
5391	6510	4.173256	GGAATTGGTTGTCGCTTAAATGG	58.827	43.478	0.00	0.00	0.00	3.16
5396	6515	3.071479	GTCTGGAATTGGTTGTCGCTTA	58.929	45.455	0.00	0.00	0.00	3.09
5397	6516	1.880027	GTCTGGAATTGGTTGTCGCTT	59.120	47.619	0.00	0.00	0.00	4.68
5406	6525	1.279271	ACTTCCTCCGTCTGGAATTGG	59.721	52.381	0.00	0.00	45.87	3.16
5407	6526	2.770164	ACTTCCTCCGTCTGGAATTG	57.230	50.000	0.00	0.00	45.87	2.32
5413	6532	4.188247	TGATTTGTACTTCCTCCGTCTG	57.812	45.455	0.00	0.00	0.00	3.51
5414	6533	4.884668	TTGATTTGTACTTCCTCCGTCT	57.115	40.909	0.00	0.00	0.00	4.18
5433	6556	7.579589	TTCTTCAGTGTTTGTTTGTCATTTG	57.420	32.000	0.00	0.00	0.00	2.32
5437	6560	6.507958	TCATTCTTCAGTGTTTGTTTGTCA	57.492	33.333	0.00	0.00	0.00	3.58
5439	6562	6.686630	TGTTCATTCTTCAGTGTTTGTTTGT	58.313	32.000	0.00	0.00	0.00	2.83
5458	6581	4.396478	TCGGTTGAGAAACATTGTTGTTCA	59.604	37.500	2.13	7.37	45.30	3.18
5459	6582	4.915704	TCGGTTGAGAAACATTGTTGTTC	58.084	39.130	2.13	4.91	45.30	3.18
5502	6625	5.614308	TCTTTCAGATCTCAACTGCAAGAA	58.386	37.500	0.00	0.00	41.64	2.52
5556	6680	0.400213	TCAATGCGTCAGGGGAAACT	59.600	50.000	0.00	0.00	0.00	2.66
5590	6717	2.485814	GCAACACCTCTTCATCTTGGAC	59.514	50.000	0.00	0.00	0.00	4.02
5595	6722	3.777106	TGAAGCAACACCTCTTCATCT	57.223	42.857	1.03	0.00	42.43	2.90
5634	6761	8.244802	GCGTATCTCCATGTATTAATACAGACT	58.755	37.037	27.40	12.92	45.46	3.24
5635	6762	7.488471	GGCGTATCTCCATGTATTAATACAGAC	59.512	40.741	27.40	13.14	45.46	3.51
5658	6785	0.813184	AGGTGCTCATTTTCATGGCG	59.187	50.000	0.00	0.00	32.24	5.69
5659	6786	3.633525	TGATAGGTGCTCATTTTCATGGC	59.366	43.478	0.00	0.00	0.00	4.40
5660	6787	7.610692	AGATATGATAGGTGCTCATTTTCATGG	59.389	37.037	0.00	0.00	35.12	3.66
5661	6788	8.451748	CAGATATGATAGGTGCTCATTTTCATG	58.548	37.037	8.10	0.00	35.12	3.07
5662	6789	8.162085	ACAGATATGATAGGTGCTCATTTTCAT	58.838	33.333	0.00	4.67	35.12	2.57
5771	6902	7.792374	ATGCAGTATACAGTTTGAACATAGG	57.208	36.000	5.50	0.00	0.00	2.57
5838	6971	9.740239	ATAAGGATTTCGAAATGATCAATGTTG	57.260	29.630	27.27	0.00	0.00	3.33
5885	7018	8.941995	ATCTCCTGATATTAGTGCTAGTTGTA	57.058	34.615	0.00	0.00	0.00	2.41
5893	7026	6.426328	CACTTTGGATCTCCTGATATTAGTGC	59.574	42.308	0.00	0.00	36.82	4.40
5894	7027	7.730084	TCACTTTGGATCTCCTGATATTAGTG	58.270	38.462	0.00	0.00	36.82	2.74
5895	7028	7.472663	GCTCACTTTGGATCTCCTGATATTAGT	60.473	40.741	0.00	0.00	36.82	2.24
5896	7029	6.873076	GCTCACTTTGGATCTCCTGATATTAG	59.127	42.308	0.00	0.00	36.82	1.73
5898	7031	5.131642	TGCTCACTTTGGATCTCCTGATATT	59.868	40.000	0.00	0.00	36.82	1.28
5900	7033	4.033009	TGCTCACTTTGGATCTCCTGATA	58.967	43.478	0.00	0.00	36.82	2.15
5901	7034	2.842496	TGCTCACTTTGGATCTCCTGAT	59.158	45.455	0.00	0.00	36.82	2.90
5902	7035	2.259917	TGCTCACTTTGGATCTCCTGA	58.740	47.619	0.00	0.00	36.82	3.86

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.