Multiple sequence alignment - TraesCS7A01G029500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G029500 chr7A 100.000 2341 0 0 426 2766 11998734 12001074 0.000000e+00 4324.0
1 TraesCS7A01G029500 chr7A 100.000 94 0 0 1 94 11998309 11998402 1.020000e-39 174.0
2 TraesCS7A01G029500 chr7D 93.939 1452 60 9 438 1864 12388076 12389524 0.000000e+00 2169.0
3 TraesCS7A01G029500 chr7D 94.934 454 22 1 1864 2317 12389906 12390358 0.000000e+00 710.0
4 TraesCS7A01G029500 chr7D 98.684 76 0 1 1 76 12387817 12387891 1.730000e-27 134.0
5 TraesCS7A01G029500 chr4A 89.288 1531 100 27 489 1979 725752715 725751209 0.000000e+00 1860.0
6 TraesCS7A01G029500 chr4A 91.866 209 10 2 1526 1727 725800164 725799956 4.510000e-73 285.0
7 TraesCS7A01G029500 chr4A 95.349 43 2 0 428 470 725800240 725800198 4.940000e-08 69.4
8 TraesCS7A01G029500 chr4A 94.737 38 2 0 489 526 725800197 725800160 2.970000e-05 60.2
9 TraesCS7A01G029500 chr1D 79.675 123 17 4 2636 2758 443427459 443427573 6.350000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G029500 chr7A 11998309 12001074 2765 False 2249.000000 4324 100.000000 1 2766 2 chr7A.!!$F1 2765
1 TraesCS7A01G029500 chr7D 12387817 12390358 2541 False 1004.333333 2169 95.852333 1 2317 3 chr7D.!!$F1 2316
2 TraesCS7A01G029500 chr4A 725751209 725752715 1506 True 1860.000000 1860 89.288000 489 1979 1 chr4A.!!$R1 1490

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
716 726 1.3382 GCGCCCATCTCGGATAAGATT 60.338 52.381 0.0 0.0 33.68 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2446 2875 0.032615 AAGCAGTGGGTTGGTCCAAA 60.033 50.0 5.69 0.0 38.72 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 9.778741 TTTAGAAGTATCTGAAATGACAACACT 57.221 29.630 0.00 0.00 37.10 3.55
85 86 9.778741 TTAGAAGTATCTGAAATGACAACACTT 57.221 29.630 0.00 0.00 37.10 3.16
86 87 8.682936 AGAAGTATCTGAAATGACAACACTTT 57.317 30.769 0.00 0.00 33.59 2.66
87 88 9.778741 AGAAGTATCTGAAATGACAACACTTTA 57.221 29.630 0.00 0.00 33.59 1.85
88 89 9.813080 GAAGTATCTGAAATGACAACACTTTAC 57.187 33.333 0.00 0.00 0.00 2.01
89 90 8.324163 AGTATCTGAAATGACAACACTTTACC 57.676 34.615 0.00 0.00 0.00 2.85
90 91 6.575162 ATCTGAAATGACAACACTTTACCC 57.425 37.500 0.00 0.00 0.00 3.69
91 92 5.690865 TCTGAAATGACAACACTTTACCCT 58.309 37.500 0.00 0.00 0.00 4.34
92 93 6.833041 TCTGAAATGACAACACTTTACCCTA 58.167 36.000 0.00 0.00 0.00 3.53
93 94 6.708949 TCTGAAATGACAACACTTTACCCTAC 59.291 38.462 0.00 0.00 0.00 3.18
716 726 1.338200 GCGCCCATCTCGGATAAGATT 60.338 52.381 0.00 0.00 33.68 2.40
766 777 7.816995 TGCACATTTATTAACCTGATTTGTTCC 59.183 33.333 0.00 0.00 0.00 3.62
1000 1017 2.833913 CCCACCTGCACCTCCAACT 61.834 63.158 0.00 0.00 0.00 3.16
1033 1050 8.611257 TCCTTCCTCTCTATTTTGTCCAAATTA 58.389 33.333 0.00 0.00 36.43 1.40
1059 1088 0.317938 CTCGCTGCCGTACACCTATC 60.318 60.000 0.00 0.00 35.54 2.08
1162 1194 1.202639 ACAACACAAGCCTCGTGATGA 60.203 47.619 12.83 0.00 38.91 2.92
1186 1218 0.807496 GTGCAAGAACATCTCAGGCC 59.193 55.000 0.00 0.00 0.00 5.19
1243 1275 1.604278 CATCGACGCTCCTATCAGACA 59.396 52.381 0.00 0.00 0.00 3.41
1289 1321 2.117156 GCGGCCTTGCACTCATCAT 61.117 57.895 0.00 0.00 34.15 2.45
1455 1487 0.813184 CGCTCCAAATCTGCCACAAT 59.187 50.000 0.00 0.00 0.00 2.71
1461 1493 5.221382 GCTCCAAATCTGCCACAATATCATT 60.221 40.000 0.00 0.00 0.00 2.57
1476 1508 1.218047 CATTCAGGACTTCGGCCGA 59.782 57.895 27.28 27.28 0.00 5.54
1497 1529 1.847798 AAGGTAAGCATGGGCCGACA 61.848 55.000 0.00 0.00 42.56 4.35
1529 1561 1.620819 ACCAGAGTGCGTTGAGAAGAT 59.379 47.619 0.00 0.00 0.00 2.40
1635 1673 1.468520 GCAATCGTCAGCAAAGCCTTA 59.531 47.619 0.00 0.00 0.00 2.69
1719 1759 6.555315 GTGTGATGTGAGGATGGAATTTAAC 58.445 40.000 0.00 0.00 0.00 2.01
1787 1834 1.157585 CGTAGCGAGCTATGCCTCTA 58.842 55.000 10.88 0.00 0.00 2.43
1807 1854 1.766461 ACCTCCCACCCATCCGATC 60.766 63.158 0.00 0.00 0.00 3.69
1808 1855 2.520536 CCTCCCACCCATCCGATCC 61.521 68.421 0.00 0.00 0.00 3.36
1965 2394 1.259840 TGGGCCAGGGTAACTACGTC 61.260 60.000 0.00 0.00 0.00 4.34
2006 2435 7.174413 TCCTGTTTTTCTCCATCAATGATGTA 58.826 34.615 20.39 5.42 38.28 2.29
2087 2516 2.744166 GCAAGGGAGGTAACCGGAATAC 60.744 54.545 9.46 11.16 37.17 1.89
2105 2534 6.038825 CGGAATACTCTAGTTGTGAGACTGAT 59.961 42.308 0.00 0.00 35.66 2.90
2113 2542 7.963532 TCTAGTTGTGAGACTGATTTTAAGGT 58.036 34.615 0.00 0.00 0.00 3.50
2115 2544 9.360093 CTAGTTGTGAGACTGATTTTAAGGTAG 57.640 37.037 0.00 0.00 0.00 3.18
2119 2548 5.351740 GTGAGACTGATTTTAAGGTAGGCAC 59.648 44.000 0.00 0.00 0.00 5.01
2140 2569 3.827302 ACTCTTTCTCCGCTTCTCAACTA 59.173 43.478 0.00 0.00 0.00 2.24
2163 2592 3.481559 TCAATCTCCTCCTGAAGTCCT 57.518 47.619 0.00 0.00 0.00 3.85
2166 2595 3.774216 CAATCTCCTCCTGAAGTCCTCTT 59.226 47.826 0.00 0.00 36.51 2.85
2173 2602 3.774216 CTCCTGAAGTCCTCTTCCAGATT 59.226 47.826 5.68 0.00 46.66 2.40
2190 2619 5.063204 CCAGATTTCACAACCACAACTCTA 58.937 41.667 0.00 0.00 0.00 2.43
2317 2746 9.503399 ACTTTGATCCTTTTGTAGTACCTTTAG 57.497 33.333 0.00 0.00 0.00 1.85
2318 2747 9.503399 CTTTGATCCTTTTGTAGTACCTTTAGT 57.497 33.333 0.00 0.00 0.00 2.24
2319 2748 9.856162 TTTGATCCTTTTGTAGTACCTTTAGTT 57.144 29.630 0.00 0.00 0.00 2.24
2320 2749 8.842358 TGATCCTTTTGTAGTACCTTTAGTTG 57.158 34.615 0.00 0.00 0.00 3.16
2321 2750 7.881232 TGATCCTTTTGTAGTACCTTTAGTTGG 59.119 37.037 0.00 0.00 0.00 3.77
2322 2751 7.377696 TCCTTTTGTAGTACCTTTAGTTGGA 57.622 36.000 0.00 0.00 0.00 3.53
2323 2752 7.447594 TCCTTTTGTAGTACCTTTAGTTGGAG 58.552 38.462 0.00 0.00 0.00 3.86
2324 2753 7.290714 TCCTTTTGTAGTACCTTTAGTTGGAGA 59.709 37.037 0.00 0.00 0.00 3.71
2325 2754 7.935210 CCTTTTGTAGTACCTTTAGTTGGAGAA 59.065 37.037 0.00 0.00 0.00 2.87
2326 2755 9.333724 CTTTTGTAGTACCTTTAGTTGGAGAAA 57.666 33.333 0.00 0.00 0.00 2.52
2327 2756 8.897872 TTTGTAGTACCTTTAGTTGGAGAAAG 57.102 34.615 0.00 0.00 33.31 2.62
2332 2761 3.486383 CCTTTAGTTGGAGAAAGGTGCA 58.514 45.455 5.42 0.00 44.52 4.57
2333 2762 4.082125 CCTTTAGTTGGAGAAAGGTGCAT 58.918 43.478 5.42 0.00 44.52 3.96
2334 2763 4.156739 CCTTTAGTTGGAGAAAGGTGCATC 59.843 45.833 5.42 0.00 44.52 3.91
2335 2764 2.206576 AGTTGGAGAAAGGTGCATCC 57.793 50.000 0.00 0.00 0.00 3.51
2336 2765 1.425066 AGTTGGAGAAAGGTGCATCCA 59.575 47.619 0.20 0.20 40.04 3.41
2337 2766 2.158475 AGTTGGAGAAAGGTGCATCCAA 60.158 45.455 12.17 12.17 46.80 3.53
2338 2767 1.909700 TGGAGAAAGGTGCATCCAAC 58.090 50.000 1.92 0.00 38.86 3.77
2339 2768 1.177401 GGAGAAAGGTGCATCCAACC 58.823 55.000 0.00 0.00 39.02 3.77
2340 2769 1.547675 GGAGAAAGGTGCATCCAACCA 60.548 52.381 0.00 0.00 39.02 3.67
2341 2770 1.541588 GAGAAAGGTGCATCCAACCAC 59.458 52.381 0.00 0.00 39.02 4.16
2345 2774 3.903208 GGTGCATCCAACCACCTAT 57.097 52.632 2.72 0.00 46.23 2.57
2346 2775 1.680338 GGTGCATCCAACCACCTATC 58.320 55.000 2.72 0.00 46.23 2.08
2347 2776 1.680338 GTGCATCCAACCACCTATCC 58.320 55.000 0.00 0.00 0.00 2.59
2348 2777 1.212935 GTGCATCCAACCACCTATCCT 59.787 52.381 0.00 0.00 0.00 3.24
2349 2778 2.438021 GTGCATCCAACCACCTATCCTA 59.562 50.000 0.00 0.00 0.00 2.94
2350 2779 2.438021 TGCATCCAACCACCTATCCTAC 59.562 50.000 0.00 0.00 0.00 3.18
2351 2780 2.438021 GCATCCAACCACCTATCCTACA 59.562 50.000 0.00 0.00 0.00 2.74
2352 2781 3.073062 GCATCCAACCACCTATCCTACAT 59.927 47.826 0.00 0.00 0.00 2.29
2353 2782 4.286032 GCATCCAACCACCTATCCTACATA 59.714 45.833 0.00 0.00 0.00 2.29
2354 2783 5.045578 GCATCCAACCACCTATCCTACATAT 60.046 44.000 0.00 0.00 0.00 1.78
2355 2784 6.409704 CATCCAACCACCTATCCTACATATG 58.590 44.000 0.00 0.00 0.00 1.78
2356 2785 5.722290 TCCAACCACCTATCCTACATATGA 58.278 41.667 10.38 0.00 0.00 2.15
2357 2786 6.331032 TCCAACCACCTATCCTACATATGAT 58.669 40.000 10.38 0.00 0.00 2.45
2358 2787 6.440647 TCCAACCACCTATCCTACATATGATC 59.559 42.308 10.38 0.00 0.00 2.92
2359 2788 6.352222 CCAACCACCTATCCTACATATGATCC 60.352 46.154 10.38 0.00 0.00 3.36
2360 2789 5.915628 ACCACCTATCCTACATATGATCCA 58.084 41.667 10.38 0.00 0.00 3.41
2361 2790 6.515779 ACCACCTATCCTACATATGATCCAT 58.484 40.000 10.38 0.00 0.00 3.41
2362 2791 6.968248 ACCACCTATCCTACATATGATCCATT 59.032 38.462 10.38 0.00 0.00 3.16
2363 2792 7.126421 ACCACCTATCCTACATATGATCCATTC 59.874 40.741 10.38 0.00 0.00 2.67
2364 2793 7.126268 CCACCTATCCTACATATGATCCATTCA 59.874 40.741 10.38 0.00 39.12 2.57
2365 2794 8.202811 CACCTATCCTACATATGATCCATTCAG 58.797 40.741 10.38 0.00 37.89 3.02
2366 2795 7.903481 ACCTATCCTACATATGATCCATTCAGT 59.097 37.037 10.38 0.00 37.89 3.41
2367 2796 8.420222 CCTATCCTACATATGATCCATTCAGTC 58.580 40.741 10.38 0.00 37.89 3.51
2368 2797 9.199645 CTATCCTACATATGATCCATTCAGTCT 57.800 37.037 10.38 0.00 37.89 3.24
2369 2798 7.237209 TCCTACATATGATCCATTCAGTCTG 57.763 40.000 10.38 0.00 37.89 3.51
2370 2799 6.784473 TCCTACATATGATCCATTCAGTCTGT 59.216 38.462 10.38 0.00 37.89 3.41
2371 2800 7.290948 TCCTACATATGATCCATTCAGTCTGTT 59.709 37.037 10.38 0.00 37.89 3.16
2372 2801 7.387122 CCTACATATGATCCATTCAGTCTGTTG 59.613 40.741 10.38 0.00 37.89 3.33
2373 2802 6.892485 ACATATGATCCATTCAGTCTGTTGA 58.108 36.000 10.38 0.00 37.89 3.18
2374 2803 7.341030 ACATATGATCCATTCAGTCTGTTGAA 58.659 34.615 10.38 1.22 41.00 2.69
2375 2804 7.281774 ACATATGATCCATTCAGTCTGTTGAAC 59.718 37.037 10.38 0.00 39.68 3.18
2376 2805 4.326826 TGATCCATTCAGTCTGTTGAACC 58.673 43.478 0.00 0.00 39.68 3.62
2377 2806 3.140325 TCCATTCAGTCTGTTGAACCC 57.860 47.619 0.00 0.00 39.68 4.11
2378 2807 2.162681 CCATTCAGTCTGTTGAACCCC 58.837 52.381 0.00 0.00 39.68 4.95
2379 2808 2.224867 CCATTCAGTCTGTTGAACCCCT 60.225 50.000 0.00 0.00 39.68 4.79
2380 2809 3.009033 CCATTCAGTCTGTTGAACCCCTA 59.991 47.826 0.00 0.00 39.68 3.53
2381 2810 4.506625 CCATTCAGTCTGTTGAACCCCTAA 60.507 45.833 0.00 0.00 39.68 2.69
2382 2811 4.993705 TTCAGTCTGTTGAACCCCTAAT 57.006 40.909 0.00 0.00 32.39 1.73
2383 2812 4.286297 TCAGTCTGTTGAACCCCTAATG 57.714 45.455 0.00 0.00 0.00 1.90
2384 2813 3.907474 TCAGTCTGTTGAACCCCTAATGA 59.093 43.478 0.00 0.00 0.00 2.57
2385 2814 4.349636 TCAGTCTGTTGAACCCCTAATGAA 59.650 41.667 0.00 0.00 0.00 2.57
2386 2815 5.070001 CAGTCTGTTGAACCCCTAATGAAA 58.930 41.667 0.00 0.00 0.00 2.69
2387 2816 5.534654 CAGTCTGTTGAACCCCTAATGAAAA 59.465 40.000 0.00 0.00 0.00 2.29
2388 2817 5.770162 AGTCTGTTGAACCCCTAATGAAAAG 59.230 40.000 0.00 0.00 0.00 2.27
2389 2818 5.048013 GTCTGTTGAACCCCTAATGAAAAGG 60.048 44.000 0.00 0.00 0.00 3.11
2408 2837 1.956802 GAAACCTTTCCACCTGGCG 59.043 57.895 0.00 0.00 34.44 5.69
2409 2838 2.142357 GAAACCTTTCCACCTGGCGC 62.142 60.000 0.00 0.00 34.44 6.53
2430 2859 4.838486 CTCGCCGGTCGCTCACTC 62.838 72.222 12.56 0.00 38.27 3.51
2434 2863 4.039357 CCGGTCGCTCACTCACGT 62.039 66.667 0.00 0.00 0.00 4.49
2435 2864 2.683859 CCGGTCGCTCACTCACGTA 61.684 63.158 0.00 0.00 0.00 3.57
2436 2865 1.226046 CGGTCGCTCACTCACGTAG 60.226 63.158 0.00 0.00 0.00 3.51
2437 2866 1.514443 GGTCGCTCACTCACGTAGC 60.514 63.158 0.00 0.00 0.00 3.58
2440 2869 2.179517 GCTCACTCACGTAGCGCT 59.820 61.111 17.26 17.26 0.00 5.92
2441 2870 1.428219 GCTCACTCACGTAGCGCTA 59.572 57.895 14.45 14.45 0.00 4.26
2442 2871 0.029567 GCTCACTCACGTAGCGCTAT 59.970 55.000 21.96 1.81 0.00 2.97
2443 2872 1.747956 CTCACTCACGTAGCGCTATG 58.252 55.000 30.40 30.40 0.00 2.23
2444 2873 0.248498 TCACTCACGTAGCGCTATGC 60.248 55.000 31.60 14.92 46.98 3.14
2456 2885 3.694889 GCTATGCGTTTGGACCAAC 57.305 52.632 6.36 1.62 0.00 3.77
2457 2886 0.170339 GCTATGCGTTTGGACCAACC 59.830 55.000 6.36 0.00 39.54 3.77
2458 2887 0.808755 CTATGCGTTTGGACCAACCC 59.191 55.000 6.36 0.00 38.00 4.11
2459 2888 0.110678 TATGCGTTTGGACCAACCCA 59.889 50.000 6.36 4.80 38.00 4.51
2460 2889 1.460273 ATGCGTTTGGACCAACCCAC 61.460 55.000 6.36 1.65 35.62 4.61
2461 2890 1.826487 GCGTTTGGACCAACCCACT 60.826 57.895 6.36 0.00 35.62 4.00
2462 2891 2.029743 CGTTTGGACCAACCCACTG 58.970 57.895 6.36 0.00 35.62 3.66
2463 2892 1.739667 GTTTGGACCAACCCACTGC 59.260 57.895 6.36 0.00 35.62 4.40
2464 2893 0.755327 GTTTGGACCAACCCACTGCT 60.755 55.000 6.36 0.00 35.62 4.24
2465 2894 0.032615 TTTGGACCAACCCACTGCTT 60.033 50.000 6.36 0.00 35.62 3.91
2466 2895 0.847373 TTGGACCAACCCACTGCTTA 59.153 50.000 1.69 0.00 35.62 3.09
2467 2896 0.847373 TGGACCAACCCACTGCTTAA 59.153 50.000 0.00 0.00 38.00 1.85
2468 2897 1.427368 TGGACCAACCCACTGCTTAAT 59.573 47.619 0.00 0.00 38.00 1.40
2469 2898 2.158385 TGGACCAACCCACTGCTTAATT 60.158 45.455 0.00 0.00 38.00 1.40
2470 2899 2.231235 GGACCAACCCACTGCTTAATTG 59.769 50.000 0.00 0.00 0.00 2.32
2471 2900 2.890945 GACCAACCCACTGCTTAATTGT 59.109 45.455 0.00 0.00 0.00 2.71
2472 2901 3.304829 ACCAACCCACTGCTTAATTGTT 58.695 40.909 0.00 0.00 0.00 2.83
2473 2902 3.069443 ACCAACCCACTGCTTAATTGTTG 59.931 43.478 0.00 0.00 33.29 3.33
2474 2903 3.059166 CAACCCACTGCTTAATTGTTGC 58.941 45.455 0.00 0.00 0.00 4.17
2475 2904 1.618343 ACCCACTGCTTAATTGTTGCC 59.382 47.619 0.00 0.00 0.00 4.52
2476 2905 1.895131 CCCACTGCTTAATTGTTGCCT 59.105 47.619 0.00 0.00 0.00 4.75
2477 2906 2.299867 CCCACTGCTTAATTGTTGCCTT 59.700 45.455 0.00 0.00 0.00 4.35
2478 2907 3.509575 CCCACTGCTTAATTGTTGCCTTA 59.490 43.478 0.00 0.00 0.00 2.69
2479 2908 4.160252 CCCACTGCTTAATTGTTGCCTTAT 59.840 41.667 0.00 0.00 0.00 1.73
2480 2909 5.343249 CCACTGCTTAATTGTTGCCTTATC 58.657 41.667 0.00 0.00 0.00 1.75
2481 2910 5.126061 CCACTGCTTAATTGTTGCCTTATCT 59.874 40.000 0.00 0.00 0.00 1.98
2482 2911 6.318648 CCACTGCTTAATTGTTGCCTTATCTA 59.681 38.462 0.00 0.00 0.00 1.98
2483 2912 7.013655 CCACTGCTTAATTGTTGCCTTATCTAT 59.986 37.037 0.00 0.00 0.00 1.98
2484 2913 8.408601 CACTGCTTAATTGTTGCCTTATCTATT 58.591 33.333 0.00 0.00 0.00 1.73
2485 2914 8.624776 ACTGCTTAATTGTTGCCTTATCTATTC 58.375 33.333 0.00 0.00 0.00 1.75
2486 2915 8.518430 TGCTTAATTGTTGCCTTATCTATTCA 57.482 30.769 0.00 0.00 0.00 2.57
2487 2916 8.405531 TGCTTAATTGTTGCCTTATCTATTCAC 58.594 33.333 0.00 0.00 0.00 3.18
2488 2917 8.405531 GCTTAATTGTTGCCTTATCTATTCACA 58.594 33.333 0.00 0.00 0.00 3.58
2489 2918 9.722056 CTTAATTGTTGCCTTATCTATTCACAC 57.278 33.333 0.00 0.00 0.00 3.82
2490 2919 5.794687 TTGTTGCCTTATCTATTCACACG 57.205 39.130 0.00 0.00 0.00 4.49
2491 2920 3.621268 TGTTGCCTTATCTATTCACACGC 59.379 43.478 0.00 0.00 0.00 5.34
2492 2921 3.535280 TGCCTTATCTATTCACACGCA 57.465 42.857 0.00 0.00 0.00 5.24
2493 2922 3.867857 TGCCTTATCTATTCACACGCAA 58.132 40.909 0.00 0.00 0.00 4.85
2495 2924 3.248602 GCCTTATCTATTCACACGCAAGG 59.751 47.826 0.00 0.00 46.39 3.61
2507 2936 4.847444 GCAAGGGGCGCTCTCCTC 62.847 72.222 7.48 0.00 32.02 3.71
2508 2937 4.168291 CAAGGGGCGCTCTCCTCC 62.168 72.222 7.48 0.00 32.02 4.30
2509 2938 4.722535 AAGGGGCGCTCTCCTCCA 62.723 66.667 7.48 0.00 32.02 3.86
2514 2943 3.474570 GCGCTCTCCTCCACCCAT 61.475 66.667 0.00 0.00 0.00 4.00
2515 2944 3.036429 GCGCTCTCCTCCACCCATT 62.036 63.158 0.00 0.00 0.00 3.16
2516 2945 1.604378 CGCTCTCCTCCACCCATTT 59.396 57.895 0.00 0.00 0.00 2.32
2517 2946 0.035056 CGCTCTCCTCCACCCATTTT 60.035 55.000 0.00 0.00 0.00 1.82
2518 2947 1.614317 CGCTCTCCTCCACCCATTTTT 60.614 52.381 0.00 0.00 0.00 1.94
2554 2983 7.721286 AAAATGCATATCTCTCTTTCTACCG 57.279 36.000 0.00 0.00 0.00 4.02
2555 2984 6.412362 AATGCATATCTCTCTTTCTACCGT 57.588 37.500 0.00 0.00 0.00 4.83
2556 2985 5.440234 TGCATATCTCTCTTTCTACCGTC 57.560 43.478 0.00 0.00 0.00 4.79
2557 2986 4.023963 TGCATATCTCTCTTTCTACCGTCG 60.024 45.833 0.00 0.00 0.00 5.12
2558 2987 4.023878 GCATATCTCTCTTTCTACCGTCGT 60.024 45.833 0.00 0.00 0.00 4.34
2559 2988 5.681880 CATATCTCTCTTTCTACCGTCGTC 58.318 45.833 0.00 0.00 0.00 4.20
2560 2989 1.998315 TCTCTCTTTCTACCGTCGTCG 59.002 52.381 0.00 0.00 0.00 5.12
2561 2990 0.445436 TCTCTTTCTACCGTCGTCGC 59.555 55.000 0.00 0.00 35.54 5.19
2562 2991 0.447011 CTCTTTCTACCGTCGTCGCT 59.553 55.000 0.00 0.00 35.54 4.93
2563 2992 0.167470 TCTTTCTACCGTCGTCGCTG 59.833 55.000 0.00 0.00 35.54 5.18
2564 2993 0.797249 CTTTCTACCGTCGTCGCTGG 60.797 60.000 0.00 1.55 35.54 4.85
2565 2994 2.807631 TTTCTACCGTCGTCGCTGGC 62.808 60.000 0.00 0.00 35.54 4.85
2582 3011 4.127040 CGCGGCACTCAGCTCTCT 62.127 66.667 0.00 0.00 44.79 3.10
2583 3012 2.264166 GCGGCACTCAGCTCTCTT 59.736 61.111 0.00 0.00 44.79 2.85
2584 3013 1.809209 GCGGCACTCAGCTCTCTTC 60.809 63.158 0.00 0.00 44.79 2.87
2585 3014 1.153667 CGGCACTCAGCTCTCTTCC 60.154 63.158 0.00 0.00 44.79 3.46
2586 3015 1.220477 GGCACTCAGCTCTCTTCCC 59.780 63.158 0.00 0.00 44.79 3.97
2587 3016 1.220477 GCACTCAGCTCTCTTCCCC 59.780 63.158 0.00 0.00 41.15 4.81
2588 3017 1.904032 CACTCAGCTCTCTTCCCCC 59.096 63.158 0.00 0.00 0.00 5.40
2589 3018 0.906756 CACTCAGCTCTCTTCCCCCA 60.907 60.000 0.00 0.00 0.00 4.96
2590 3019 0.617249 ACTCAGCTCTCTTCCCCCAG 60.617 60.000 0.00 0.00 0.00 4.45
2591 3020 0.617249 CTCAGCTCTCTTCCCCCAGT 60.617 60.000 0.00 0.00 0.00 4.00
2592 3021 0.178891 TCAGCTCTCTTCCCCCAGTT 60.179 55.000 0.00 0.00 0.00 3.16
2593 3022 0.035630 CAGCTCTCTTCCCCCAGTTG 60.036 60.000 0.00 0.00 0.00 3.16
2594 3023 0.474660 AGCTCTCTTCCCCCAGTTGT 60.475 55.000 0.00 0.00 0.00 3.32
2595 3024 0.322008 GCTCTCTTCCCCCAGTTGTG 60.322 60.000 0.00 0.00 0.00 3.33
2596 3025 0.322008 CTCTCTTCCCCCAGTTGTGC 60.322 60.000 0.00 0.00 0.00 4.57
2597 3026 1.672356 CTCTTCCCCCAGTTGTGCG 60.672 63.158 0.00 0.00 0.00 5.34
2598 3027 2.672996 CTTCCCCCAGTTGTGCGG 60.673 66.667 0.00 0.00 0.00 5.69
2599 3028 4.966787 TTCCCCCAGTTGTGCGGC 62.967 66.667 0.00 0.00 0.00 6.53
2612 3041 3.102097 GCGGCCTGCAACTACATC 58.898 61.111 13.61 0.00 45.45 3.06
2613 3042 2.472909 GCGGCCTGCAACTACATCC 61.473 63.158 13.61 0.00 45.45 3.51
2614 3043 1.078497 CGGCCTGCAACTACATCCA 60.078 57.895 0.00 0.00 0.00 3.41
2615 3044 1.369091 CGGCCTGCAACTACATCCAC 61.369 60.000 0.00 0.00 0.00 4.02
2616 3045 0.322456 GGCCTGCAACTACATCCACA 60.322 55.000 0.00 0.00 0.00 4.17
2617 3046 1.683011 GGCCTGCAACTACATCCACAT 60.683 52.381 0.00 0.00 0.00 3.21
2618 3047 1.402968 GCCTGCAACTACATCCACATG 59.597 52.381 0.00 0.00 35.92 3.21
2619 3048 2.940971 GCCTGCAACTACATCCACATGA 60.941 50.000 0.00 0.00 33.72 3.07
2620 3049 2.941064 CCTGCAACTACATCCACATGAG 59.059 50.000 0.00 0.00 33.72 2.90
2621 3050 2.941064 CTGCAACTACATCCACATGAGG 59.059 50.000 2.20 2.20 33.72 3.86
2622 3051 2.292267 GCAACTACATCCACATGAGGG 58.708 52.381 9.48 5.61 33.72 4.30
2623 3052 2.092968 GCAACTACATCCACATGAGGGA 60.093 50.000 9.48 10.98 39.14 4.20
2624 3053 3.801698 CAACTACATCCACATGAGGGAG 58.198 50.000 9.48 4.94 41.66 4.30
2625 3054 2.402564 ACTACATCCACATGAGGGAGG 58.597 52.381 17.13 17.13 40.16 4.30
2626 3055 3.424640 ACATCCACATGAGGGAGGT 57.575 52.632 18.17 18.17 44.01 3.85
2627 3056 1.673767 ACATCCACATGAGGGAGGTT 58.326 50.000 18.17 7.14 46.43 3.50
2628 3057 1.283029 ACATCCACATGAGGGAGGTTG 59.717 52.381 18.17 12.85 46.43 3.77
2629 3058 0.257039 ATCCACATGAGGGAGGTTGC 59.743 55.000 9.48 0.00 37.96 4.17
2630 3059 1.746615 CCACATGAGGGAGGTTGCG 60.747 63.158 0.00 0.00 0.00 4.85
2631 3060 1.296392 CACATGAGGGAGGTTGCGA 59.704 57.895 0.00 0.00 0.00 5.10
2632 3061 0.321564 CACATGAGGGAGGTTGCGAA 60.322 55.000 0.00 0.00 0.00 4.70
2633 3062 0.620556 ACATGAGGGAGGTTGCGAAT 59.379 50.000 0.00 0.00 0.00 3.34
2634 3063 1.303309 CATGAGGGAGGTTGCGAATC 58.697 55.000 0.00 0.00 0.00 2.52
2635 3064 0.179073 ATGAGGGAGGTTGCGAATCG 60.179 55.000 0.00 0.00 0.00 3.34
2636 3065 1.254975 TGAGGGAGGTTGCGAATCGA 61.255 55.000 6.91 0.00 0.00 3.59
2637 3066 0.528684 GAGGGAGGTTGCGAATCGAG 60.529 60.000 6.91 0.00 0.00 4.04
2638 3067 1.521681 GGGAGGTTGCGAATCGAGG 60.522 63.158 6.91 0.00 0.00 4.63
2639 3068 1.521681 GGAGGTTGCGAATCGAGGG 60.522 63.158 6.91 0.00 0.00 4.30
2640 3069 1.521681 GAGGTTGCGAATCGAGGGG 60.522 63.158 6.91 0.00 0.00 4.79
2641 3070 2.513897 GGTTGCGAATCGAGGGGG 60.514 66.667 6.91 0.00 0.00 5.40
2642 3071 2.582436 GTTGCGAATCGAGGGGGA 59.418 61.111 6.91 0.00 0.00 4.81
2643 3072 1.814169 GTTGCGAATCGAGGGGGAC 60.814 63.158 6.91 0.00 0.00 4.46
2644 3073 1.987855 TTGCGAATCGAGGGGGACT 60.988 57.895 6.91 0.00 0.00 3.85
2645 3074 2.107141 GCGAATCGAGGGGGACTG 59.893 66.667 6.91 0.00 0.00 3.51
2646 3075 2.107141 CGAATCGAGGGGGACTGC 59.893 66.667 0.00 0.00 0.00 4.40
2647 3076 2.721167 CGAATCGAGGGGGACTGCA 61.721 63.158 0.00 0.00 0.00 4.41
2648 3077 1.144936 GAATCGAGGGGGACTGCAG 59.855 63.158 13.48 13.48 0.00 4.41
2649 3078 1.613630 AATCGAGGGGGACTGCAGT 60.614 57.895 21.88 21.88 0.00 4.40
2650 3079 1.903877 AATCGAGGGGGACTGCAGTG 61.904 60.000 27.27 8.03 0.00 3.66
2651 3080 4.767255 CGAGGGGGACTGCAGTGC 62.767 72.222 28.46 28.46 35.50 4.40
2652 3081 3.640407 GAGGGGGACTGCAGTGCA 61.640 66.667 34.97 18.58 38.19 4.57
2653 3082 2.937689 AGGGGGACTGCAGTGCAT 60.938 61.111 34.97 19.98 38.13 3.96
2654 3083 2.753043 GGGGGACTGCAGTGCATG 60.753 66.667 34.97 14.93 38.13 4.06
2655 3084 2.352422 GGGGACTGCAGTGCATGA 59.648 61.111 34.97 0.00 38.13 3.07
2656 3085 2.042831 GGGGACTGCAGTGCATGAC 61.043 63.158 34.97 19.88 38.13 3.06
2657 3086 2.393768 GGGACTGCAGTGCATGACG 61.394 63.158 34.97 9.53 38.13 4.35
2658 3087 2.477845 GACTGCAGTGCATGACGC 59.522 61.111 27.27 2.65 38.13 5.19
2659 3088 3.031964 GACTGCAGTGCATGACGCC 62.032 63.158 27.27 1.81 41.33 5.68
2660 3089 3.807538 CTGCAGTGCATGACGCCC 61.808 66.667 20.10 0.00 41.33 6.13
2674 3103 4.656117 GCCCGCGGGGTGTTTTTG 62.656 66.667 43.31 17.04 46.51 2.44
2675 3104 4.656117 CCCGCGGGGTGTTTTTGC 62.656 66.667 37.42 0.00 38.25 3.68
2677 3106 4.992294 CGCGGGGTGTTTTTGCGG 62.992 66.667 0.00 0.00 44.65 5.69
2679 3108 4.992294 CGGGGTGTTTTTGCGGCG 62.992 66.667 0.51 0.51 0.00 6.46
2680 3109 3.597728 GGGGTGTTTTTGCGGCGA 61.598 61.111 12.98 0.00 0.00 5.54
2681 3110 2.354188 GGGTGTTTTTGCGGCGAC 60.354 61.111 12.98 2.02 0.00 5.19
2682 3111 2.409651 GGTGTTTTTGCGGCGACA 59.590 55.556 12.98 5.31 0.00 4.35
2683 3112 1.657181 GGTGTTTTTGCGGCGACAG 60.657 57.895 12.98 0.00 0.00 3.51
2684 3113 1.353804 GTGTTTTTGCGGCGACAGA 59.646 52.632 12.98 0.00 0.00 3.41
2685 3114 0.657368 GTGTTTTTGCGGCGACAGAG 60.657 55.000 12.98 0.00 0.00 3.35
2686 3115 1.082104 GTTTTTGCGGCGACAGAGG 60.082 57.895 12.98 0.00 0.00 3.69
2687 3116 2.258013 TTTTTGCGGCGACAGAGGG 61.258 57.895 12.98 0.00 0.00 4.30
2688 3117 4.697756 TTTGCGGCGACAGAGGGG 62.698 66.667 12.98 0.00 0.00 4.79
2694 3123 4.373116 GCGACAGAGGGGCAACGA 62.373 66.667 0.00 0.00 37.60 3.85
2695 3124 2.125912 CGACAGAGGGGCAACGAG 60.126 66.667 0.00 0.00 37.60 4.18
2696 3125 2.636412 CGACAGAGGGGCAACGAGA 61.636 63.158 0.00 0.00 37.60 4.04
2697 3126 1.216710 GACAGAGGGGCAACGAGAG 59.783 63.158 0.00 0.00 37.60 3.20
2698 3127 2.232298 GACAGAGGGGCAACGAGAGG 62.232 65.000 0.00 0.00 37.60 3.69
2699 3128 2.120718 AGAGGGGCAACGAGAGGT 59.879 61.111 0.00 0.00 37.60 3.85
2708 3137 3.917072 AACGAGAGGTGGAAGAAGC 57.083 52.632 0.00 0.00 0.00 3.86
2709 3138 1.048601 AACGAGAGGTGGAAGAAGCA 58.951 50.000 0.00 0.00 0.00 3.91
2710 3139 1.048601 ACGAGAGGTGGAAGAAGCAA 58.951 50.000 0.00 0.00 0.00 3.91
2711 3140 1.270358 ACGAGAGGTGGAAGAAGCAAC 60.270 52.381 0.00 0.00 0.00 4.17
2712 3141 1.270305 CGAGAGGTGGAAGAAGCAACA 60.270 52.381 0.00 0.00 0.00 3.33
2713 3142 2.421619 GAGAGGTGGAAGAAGCAACAG 58.578 52.381 0.00 0.00 0.00 3.16
2714 3143 2.037772 GAGAGGTGGAAGAAGCAACAGA 59.962 50.000 0.00 0.00 0.00 3.41
2715 3144 2.439507 AGAGGTGGAAGAAGCAACAGAA 59.560 45.455 0.00 0.00 0.00 3.02
2716 3145 3.073650 AGAGGTGGAAGAAGCAACAGAAT 59.926 43.478 0.00 0.00 0.00 2.40
2717 3146 4.287067 AGAGGTGGAAGAAGCAACAGAATA 59.713 41.667 0.00 0.00 0.00 1.75
2718 3147 4.985538 AGGTGGAAGAAGCAACAGAATAA 58.014 39.130 0.00 0.00 0.00 1.40
2719 3148 5.385198 AGGTGGAAGAAGCAACAGAATAAA 58.615 37.500 0.00 0.00 0.00 1.40
2720 3149 5.833131 AGGTGGAAGAAGCAACAGAATAAAA 59.167 36.000 0.00 0.00 0.00 1.52
2721 3150 6.323739 AGGTGGAAGAAGCAACAGAATAAAAA 59.676 34.615 0.00 0.00 0.00 1.94
2722 3151 6.642540 GGTGGAAGAAGCAACAGAATAAAAAG 59.357 38.462 0.00 0.00 0.00 2.27
2723 3152 7.425606 GTGGAAGAAGCAACAGAATAAAAAGA 58.574 34.615 0.00 0.00 0.00 2.52
2724 3153 8.084684 GTGGAAGAAGCAACAGAATAAAAAGAT 58.915 33.333 0.00 0.00 0.00 2.40
2725 3154 9.295825 TGGAAGAAGCAACAGAATAAAAAGATA 57.704 29.630 0.00 0.00 0.00 1.98
2726 3155 9.780413 GGAAGAAGCAACAGAATAAAAAGATAG 57.220 33.333 0.00 0.00 0.00 2.08
2727 3156 9.780413 GAAGAAGCAACAGAATAAAAAGATAGG 57.220 33.333 0.00 0.00 0.00 2.57
2728 3157 9.520515 AAGAAGCAACAGAATAAAAAGATAGGA 57.479 29.630 0.00 0.00 0.00 2.94
2729 3158 9.171877 AGAAGCAACAGAATAAAAAGATAGGAG 57.828 33.333 0.00 0.00 0.00 3.69
2730 3159 9.167311 GAAGCAACAGAATAAAAAGATAGGAGA 57.833 33.333 0.00 0.00 0.00 3.71
2731 3160 9.692325 AAGCAACAGAATAAAAAGATAGGAGAT 57.308 29.630 0.00 0.00 0.00 2.75
2732 3161 9.336171 AGCAACAGAATAAAAAGATAGGAGATC 57.664 33.333 0.00 0.00 0.00 2.75
2733 3162 8.563732 GCAACAGAATAAAAAGATAGGAGATCC 58.436 37.037 0.00 0.00 0.00 3.36
2745 3174 2.607499 AGGAGATCCTATGGCTGAGTG 58.393 52.381 0.00 0.00 46.48 3.51
2746 3175 2.090831 AGGAGATCCTATGGCTGAGTGT 60.091 50.000 0.00 0.00 46.48 3.55
2747 3176 2.298729 GGAGATCCTATGGCTGAGTGTC 59.701 54.545 0.00 0.00 0.00 3.67
2748 3177 2.961741 GAGATCCTATGGCTGAGTGTCA 59.038 50.000 0.00 0.00 33.36 3.58
2749 3178 3.577848 GAGATCCTATGGCTGAGTGTCAT 59.422 47.826 0.00 0.00 44.20 3.06
2750 3179 3.324268 AGATCCTATGGCTGAGTGTCATG 59.676 47.826 0.00 0.00 41.68 3.07
2751 3180 2.750814 TCCTATGGCTGAGTGTCATGA 58.249 47.619 0.00 0.00 41.68 3.07
2752 3181 2.697229 TCCTATGGCTGAGTGTCATGAG 59.303 50.000 0.00 0.00 41.68 2.90
2753 3182 2.697229 CCTATGGCTGAGTGTCATGAGA 59.303 50.000 0.00 0.00 41.68 3.27
2754 3183 3.324268 CCTATGGCTGAGTGTCATGAGAT 59.676 47.826 0.00 0.00 41.68 2.75
2755 3184 2.975732 TGGCTGAGTGTCATGAGATC 57.024 50.000 0.00 0.00 0.00 2.75
2756 3185 1.483827 TGGCTGAGTGTCATGAGATCC 59.516 52.381 0.00 0.00 0.00 3.36
2757 3186 1.483827 GGCTGAGTGTCATGAGATCCA 59.516 52.381 0.00 0.00 0.00 3.41
2758 3187 2.483363 GGCTGAGTGTCATGAGATCCAG 60.483 54.545 15.51 15.51 0.00 3.86
2759 3188 2.823984 CTGAGTGTCATGAGATCCAGC 58.176 52.381 0.00 0.00 0.00 4.85
2760 3189 2.167900 CTGAGTGTCATGAGATCCAGCA 59.832 50.000 0.00 0.00 0.00 4.41
2761 3190 2.167900 TGAGTGTCATGAGATCCAGCAG 59.832 50.000 0.00 0.00 0.00 4.24
2762 3191 1.134461 AGTGTCATGAGATCCAGCAGC 60.134 52.381 0.00 0.00 0.00 5.25
2763 3192 1.134461 GTGTCATGAGATCCAGCAGCT 60.134 52.381 0.00 0.00 0.00 4.24
2764 3193 2.102084 GTGTCATGAGATCCAGCAGCTA 59.898 50.000 0.00 0.00 0.00 3.32
2765 3194 2.364647 TGTCATGAGATCCAGCAGCTAG 59.635 50.000 0.00 0.00 0.00 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 9.813080 GTAAAGTGTTGTCATTTCAGATACTTC 57.187 33.333 0.00 0.00 0.00 3.01
425 426 6.956102 TTTCCTTCCAAACATAGTAGGGTA 57.044 37.500 0.00 0.00 0.00 3.69
426 427 5.853572 TTTCCTTCCAAACATAGTAGGGT 57.146 39.130 0.00 0.00 0.00 4.34
427 428 8.996651 ATTATTTCCTTCCAAACATAGTAGGG 57.003 34.615 0.00 0.00 0.00 3.53
428 429 9.067986 GGATTATTTCCTTCCAAACATAGTAGG 57.932 37.037 0.00 0.00 41.78 3.18
429 430 8.774586 CGGATTATTTCCTTCCAAACATAGTAG 58.225 37.037 0.00 0.00 42.99 2.57
430 431 8.269317 ACGGATTATTTCCTTCCAAACATAGTA 58.731 33.333 0.00 0.00 42.99 1.82
431 432 7.067008 CACGGATTATTTCCTTCCAAACATAGT 59.933 37.037 0.00 0.00 42.99 2.12
432 433 7.282224 TCACGGATTATTTCCTTCCAAACATAG 59.718 37.037 0.00 0.00 42.99 2.23
433 434 7.113437 TCACGGATTATTTCCTTCCAAACATA 58.887 34.615 0.00 0.00 42.99 2.29
434 435 5.949354 TCACGGATTATTTCCTTCCAAACAT 59.051 36.000 0.00 0.00 42.99 2.71
435 436 5.317808 TCACGGATTATTTCCTTCCAAACA 58.682 37.500 0.00 0.00 42.99 2.83
436 437 5.890424 TCACGGATTATTTCCTTCCAAAC 57.110 39.130 0.00 0.00 42.99 2.93
464 465 4.166531 TCACCCCAAAACCTACAAGTAAGT 59.833 41.667 0.00 0.00 0.00 2.24
466 467 4.792513 TCACCCCAAAACCTACAAGTAA 57.207 40.909 0.00 0.00 0.00 2.24
609 611 7.066404 TGTGAACTAAAACATGCTGTCAAAGTA 59.934 33.333 0.00 0.00 0.00 2.24
632 642 4.256110 TGAACTTGCCTCTATGATGTGTG 58.744 43.478 0.00 0.00 0.00 3.82
682 692 6.594788 AGATGGGCGCAAATAATGAAATAT 57.405 33.333 10.83 0.00 0.00 1.28
900 917 6.582295 CGTAAATGCTATTGATTAATGCCCAC 59.418 38.462 0.00 0.00 0.00 4.61
1000 1017 7.366226 ACAAAATAGAGAGGAAGGAGGAGATA 58.634 38.462 0.00 0.00 0.00 1.98
1033 1050 3.367087 GGTGTACGGCAGCGAGAATATAT 60.367 47.826 0.00 0.00 35.77 0.86
1059 1088 0.749091 TTGAGATGGCCATGGAAGCG 60.749 55.000 26.56 0.00 0.00 4.68
1131 1160 2.930950 CTTGTGTTGTCCTTCTTCCCA 58.069 47.619 0.00 0.00 0.00 4.37
1135 1164 2.576615 GAGGCTTGTGTTGTCCTTCTT 58.423 47.619 0.00 0.00 0.00 2.52
1162 1194 1.160137 GAGATGTTCTTGCACGCCTT 58.840 50.000 0.00 0.00 0.00 4.35
1186 1218 3.291611 GCCCACCTTGAATGGCTG 58.708 61.111 0.00 0.00 40.77 4.85
1274 1306 1.202110 CGACAATGATGAGTGCAAGGC 60.202 52.381 0.00 0.00 0.00 4.35
1289 1321 2.036604 TGCACCTTGAGTATGTCGACAA 59.963 45.455 24.13 9.30 0.00 3.18
1455 1487 1.068588 CGGCCGAAGTCCTGAATGATA 59.931 52.381 24.07 0.00 0.00 2.15
1461 1493 0.320421 CTTTTCGGCCGAAGTCCTGA 60.320 55.000 36.54 21.09 35.38 3.86
1476 1508 0.039035 TCGGCCCATGCTTACCTTTT 59.961 50.000 0.00 0.00 37.74 2.27
1497 1529 1.076632 CTCTGGTAGCTCCGAGGGT 60.077 63.158 0.00 0.00 39.52 4.34
1529 1561 1.421268 AGTCCTTGATGCTGTTGGTCA 59.579 47.619 0.00 0.00 0.00 4.02
1635 1673 4.843728 TGTCGGCCAAGAAGAGATTTATT 58.156 39.130 2.24 0.00 0.00 1.40
1749 1796 6.074676 CGCTACGTCTTACTTACTGTTTTGTT 60.075 38.462 0.00 0.00 0.00 2.83
1787 1834 2.840203 ATCGGATGGGTGGGAGGTGT 62.840 60.000 0.00 0.00 0.00 4.16
1824 1871 2.771943 GGATGGATGACAGAGGTAACCA 59.228 50.000 0.00 0.00 37.17 3.67
1826 1873 3.041946 AGGGATGGATGACAGAGGTAAC 58.958 50.000 0.00 0.00 0.00 2.50
1930 2359 2.669569 CAGAGTGTGGTTGGCCCG 60.670 66.667 0.00 0.00 35.15 6.13
1965 2394 1.821332 GGAGGGCTGAGATTTGCGG 60.821 63.158 0.00 0.00 0.00 5.69
2006 2435 3.541713 GCGGCGAGGGGAGAAGAT 61.542 66.667 12.98 0.00 0.00 2.40
2029 2458 3.023735 GGGGGAGGGATGTGCCTT 61.024 66.667 0.00 0.00 36.66 4.35
2036 2465 3.739080 ATTGGCGAGGGGGAGGGAT 62.739 63.158 0.00 0.00 0.00 3.85
2087 2516 8.091449 ACCTTAAAATCAGTCTCACAACTAGAG 58.909 37.037 0.00 0.00 34.42 2.43
2105 2534 5.557866 GGAGAAAGAGTGCCTACCTTAAAA 58.442 41.667 0.00 0.00 0.00 1.52
2113 2542 1.204941 GAAGCGGAGAAAGAGTGCCTA 59.795 52.381 0.00 0.00 0.00 3.93
2115 2544 0.036858 AGAAGCGGAGAAAGAGTGCC 60.037 55.000 0.00 0.00 0.00 5.01
2119 2548 3.311486 AGTTGAGAAGCGGAGAAAGAG 57.689 47.619 0.00 0.00 0.00 2.85
2140 2569 3.454082 GGACTTCAGGAGGAGATTGATGT 59.546 47.826 0.00 0.00 33.54 3.06
2166 2595 3.882888 GAGTTGTGGTTGTGAAATCTGGA 59.117 43.478 0.00 0.00 0.00 3.86
2233 2662 3.304458 GGAAACTTAAGCAAACACGAGGG 60.304 47.826 1.29 0.00 0.00 4.30
2237 2666 3.701532 TGGGAAACTTAAGCAAACACG 57.298 42.857 1.29 0.00 0.00 4.49
2293 2722 9.856162 AACTAAAGGTACTACAAAAGGATCAAA 57.144 29.630 0.00 0.00 38.49 2.69
2317 2746 1.909700 TGGATGCACCTTTCTCCAAC 58.090 50.000 1.92 0.00 39.86 3.77
2318 2747 2.238521 GTTGGATGCACCTTTCTCCAA 58.761 47.619 12.17 12.17 43.63 3.53
2319 2748 1.547675 GGTTGGATGCACCTTTCTCCA 60.548 52.381 0.20 0.20 39.86 3.86
2320 2749 1.177401 GGTTGGATGCACCTTTCTCC 58.823 55.000 0.00 0.00 39.86 3.71
2321 2750 1.541588 GTGGTTGGATGCACCTTTCTC 59.458 52.381 0.00 0.00 39.86 2.87
2322 2751 1.620822 GTGGTTGGATGCACCTTTCT 58.379 50.000 0.00 0.00 39.86 2.52
2323 2752 0.603065 GGTGGTTGGATGCACCTTTC 59.397 55.000 0.00 0.00 39.86 2.62
2324 2753 0.188342 AGGTGGTTGGATGCACCTTT 59.812 50.000 0.00 0.00 44.87 3.11
2325 2754 1.072266 TAGGTGGTTGGATGCACCTT 58.928 50.000 0.17 0.00 44.87 3.50
2326 2755 3.593048 AGGTGGTTGGATGCACCT 58.407 55.556 0.00 0.00 42.66 4.00
2327 2756 1.680338 GATAGGTGGTTGGATGCACC 58.320 55.000 0.00 0.00 37.95 5.01
2328 2757 1.212935 AGGATAGGTGGTTGGATGCAC 59.787 52.381 0.00 0.00 0.00 4.57
2329 2758 1.595311 AGGATAGGTGGTTGGATGCA 58.405 50.000 0.00 0.00 0.00 3.96
2330 2759 2.438021 TGTAGGATAGGTGGTTGGATGC 59.562 50.000 0.00 0.00 0.00 3.91
2331 2760 4.982241 ATGTAGGATAGGTGGTTGGATG 57.018 45.455 0.00 0.00 0.00 3.51
2332 2761 6.331032 TCATATGTAGGATAGGTGGTTGGAT 58.669 40.000 1.90 0.00 0.00 3.41
2333 2762 5.722290 TCATATGTAGGATAGGTGGTTGGA 58.278 41.667 1.90 0.00 0.00 3.53
2334 2763 6.352222 GGATCATATGTAGGATAGGTGGTTGG 60.352 46.154 1.90 0.00 0.00 3.77
2335 2764 6.213397 TGGATCATATGTAGGATAGGTGGTTG 59.787 42.308 1.90 0.00 0.00 3.77
2336 2765 6.331032 TGGATCATATGTAGGATAGGTGGTT 58.669 40.000 1.90 0.00 0.00 3.67
2337 2766 5.915628 TGGATCATATGTAGGATAGGTGGT 58.084 41.667 1.90 0.00 0.00 4.16
2338 2767 7.126268 TGAATGGATCATATGTAGGATAGGTGG 59.874 40.741 1.90 0.00 31.50 4.61
2339 2768 8.082672 TGAATGGATCATATGTAGGATAGGTG 57.917 38.462 1.90 0.00 31.50 4.00
2340 2769 7.903481 ACTGAATGGATCATATGTAGGATAGGT 59.097 37.037 1.90 0.00 37.44 3.08
2341 2770 8.316497 ACTGAATGGATCATATGTAGGATAGG 57.684 38.462 1.90 0.00 37.44 2.57
2342 2771 9.199645 AGACTGAATGGATCATATGTAGGATAG 57.800 37.037 1.90 0.00 37.44 2.08
2343 2772 8.975295 CAGACTGAATGGATCATATGTAGGATA 58.025 37.037 1.90 0.00 37.44 2.59
2344 2773 7.457218 ACAGACTGAATGGATCATATGTAGGAT 59.543 37.037 10.08 0.00 37.44 3.24
2345 2774 6.784473 ACAGACTGAATGGATCATATGTAGGA 59.216 38.462 10.08 0.00 37.44 2.94
2346 2775 7.002250 ACAGACTGAATGGATCATATGTAGG 57.998 40.000 10.08 0.00 37.44 3.18
2347 2776 8.146412 TCAACAGACTGAATGGATCATATGTAG 58.854 37.037 10.08 0.00 37.44 2.74
2348 2777 8.021898 TCAACAGACTGAATGGATCATATGTA 57.978 34.615 10.08 0.00 37.44 2.29
2349 2778 6.892485 TCAACAGACTGAATGGATCATATGT 58.108 36.000 10.08 0.00 37.44 2.29
2350 2779 7.255035 GGTTCAACAGACTGAATGGATCATATG 60.255 40.741 10.08 0.00 37.63 1.78
2351 2780 6.769822 GGTTCAACAGACTGAATGGATCATAT 59.230 38.462 10.08 0.00 37.63 1.78
2352 2781 6.115446 GGTTCAACAGACTGAATGGATCATA 58.885 40.000 10.08 0.00 37.63 2.15
2353 2782 4.946157 GGTTCAACAGACTGAATGGATCAT 59.054 41.667 10.08 0.00 37.63 2.45
2354 2783 4.326826 GGTTCAACAGACTGAATGGATCA 58.673 43.478 10.08 0.00 37.63 2.92
2355 2784 3.691609 GGGTTCAACAGACTGAATGGATC 59.308 47.826 10.08 2.86 37.63 3.36
2356 2785 3.562176 GGGGTTCAACAGACTGAATGGAT 60.562 47.826 10.08 0.00 37.63 3.41
2357 2786 2.224769 GGGGTTCAACAGACTGAATGGA 60.225 50.000 10.08 0.00 37.63 3.41
2358 2787 2.162681 GGGGTTCAACAGACTGAATGG 58.837 52.381 10.08 0.00 37.63 3.16
2359 2788 3.146104 AGGGGTTCAACAGACTGAATG 57.854 47.619 10.08 7.99 37.63 2.67
2360 2789 4.993705 TTAGGGGTTCAACAGACTGAAT 57.006 40.909 10.08 0.00 37.63 2.57
2361 2790 4.349636 TCATTAGGGGTTCAACAGACTGAA 59.650 41.667 10.08 0.00 32.89 3.02
2362 2791 3.907474 TCATTAGGGGTTCAACAGACTGA 59.093 43.478 10.08 0.00 0.00 3.41
2363 2792 4.286297 TCATTAGGGGTTCAACAGACTG 57.714 45.455 0.00 0.00 0.00 3.51
2364 2793 4.993705 TTCATTAGGGGTTCAACAGACT 57.006 40.909 0.00 0.00 0.00 3.24
2365 2794 5.048013 CCTTTTCATTAGGGGTTCAACAGAC 60.048 44.000 0.00 0.00 0.00 3.51
2366 2795 5.076873 CCTTTTCATTAGGGGTTCAACAGA 58.923 41.667 0.00 0.00 0.00 3.41
2367 2796 5.391312 CCTTTTCATTAGGGGTTCAACAG 57.609 43.478 0.00 0.00 0.00 3.16
2390 2819 1.956802 CGCCAGGTGGAAAGGTTTC 59.043 57.895 0.00 0.00 37.39 2.78
2391 2820 2.200337 GCGCCAGGTGGAAAGGTTT 61.200 57.895 1.11 0.00 37.39 3.27
2392 2821 2.597510 GCGCCAGGTGGAAAGGTT 60.598 61.111 1.11 0.00 37.39 3.50
2417 2846 4.039357 ACGTGAGTGAGCGACCGG 62.039 66.667 0.00 0.00 46.97 5.28
2437 2866 3.447286 GGTTGGTCCAAACGCATAGCG 62.447 57.143 5.69 10.11 46.39 4.26
2438 2867 0.170339 GGTTGGTCCAAACGCATAGC 59.830 55.000 5.69 0.00 35.97 2.97
2439 2868 0.808755 GGGTTGGTCCAAACGCATAG 59.191 55.000 13.59 0.00 41.32 2.23
2440 2869 0.110678 TGGGTTGGTCCAAACGCATA 59.889 50.000 13.59 0.00 44.96 3.14
2441 2870 1.152652 TGGGTTGGTCCAAACGCAT 60.153 52.632 13.59 0.00 44.96 4.73
2442 2871 2.122167 GTGGGTTGGTCCAAACGCA 61.122 57.895 13.59 14.60 46.85 5.24
2443 2872 1.826487 AGTGGGTTGGTCCAAACGC 60.826 57.895 13.59 12.31 41.86 4.84
2444 2873 2.029743 CAGTGGGTTGGTCCAAACG 58.970 57.895 13.59 0.00 38.72 3.60
2445 2874 0.755327 AGCAGTGGGTTGGTCCAAAC 60.755 55.000 11.56 11.56 38.72 2.93
2446 2875 0.032615 AAGCAGTGGGTTGGTCCAAA 60.033 50.000 5.69 0.00 38.72 3.28
2447 2876 0.847373 TAAGCAGTGGGTTGGTCCAA 59.153 50.000 0.00 0.00 38.72 3.53
2448 2877 0.847373 TTAAGCAGTGGGTTGGTCCA 59.153 50.000 0.00 0.00 38.11 4.02
2449 2878 2.215942 ATTAAGCAGTGGGTTGGTCC 57.784 50.000 0.00 0.00 35.99 4.46
2450 2879 2.890945 ACAATTAAGCAGTGGGTTGGTC 59.109 45.455 0.00 0.00 35.99 4.02
2451 2880 2.957474 ACAATTAAGCAGTGGGTTGGT 58.043 42.857 0.00 0.00 35.99 3.67
2452 2881 3.652274 CAACAATTAAGCAGTGGGTTGG 58.348 45.455 0.00 0.00 35.99 3.77
2453 2882 3.059166 GCAACAATTAAGCAGTGGGTTG 58.941 45.455 0.00 0.00 37.71 3.77
2454 2883 2.037121 GGCAACAATTAAGCAGTGGGTT 59.963 45.455 0.00 0.00 38.49 4.11
2455 2884 1.618343 GGCAACAATTAAGCAGTGGGT 59.382 47.619 0.00 0.00 0.00 4.51
2456 2885 1.895131 AGGCAACAATTAAGCAGTGGG 59.105 47.619 0.00 0.00 41.41 4.61
2457 2886 3.665745 AAGGCAACAATTAAGCAGTGG 57.334 42.857 0.00 0.00 41.41 4.00
2458 2887 6.199937 AGATAAGGCAACAATTAAGCAGTG 57.800 37.500 0.00 0.00 41.41 3.66
2459 2888 8.525290 AATAGATAAGGCAACAATTAAGCAGT 57.475 30.769 0.00 0.00 41.41 4.40
2460 2889 8.623903 TGAATAGATAAGGCAACAATTAAGCAG 58.376 33.333 0.00 0.00 41.41 4.24
2461 2890 8.405531 GTGAATAGATAAGGCAACAATTAAGCA 58.594 33.333 0.00 0.00 41.41 3.91
2462 2891 8.405531 TGTGAATAGATAAGGCAACAATTAAGC 58.594 33.333 0.00 0.00 41.41 3.09
2463 2892 9.722056 GTGTGAATAGATAAGGCAACAATTAAG 57.278 33.333 0.00 0.00 41.41 1.85
2464 2893 8.394877 CGTGTGAATAGATAAGGCAACAATTAA 58.605 33.333 0.00 0.00 41.41 1.40
2465 2894 7.466725 GCGTGTGAATAGATAAGGCAACAATTA 60.467 37.037 0.00 0.00 41.41 1.40
2466 2895 6.677920 GCGTGTGAATAGATAAGGCAACAATT 60.678 38.462 0.00 0.00 41.41 2.32
2467 2896 5.220854 GCGTGTGAATAGATAAGGCAACAAT 60.221 40.000 0.00 0.00 41.41 2.71
2468 2897 4.094294 GCGTGTGAATAGATAAGGCAACAA 59.906 41.667 0.00 0.00 41.41 2.83
2469 2898 3.621268 GCGTGTGAATAGATAAGGCAACA 59.379 43.478 0.00 0.00 41.41 3.33
2470 2899 3.621268 TGCGTGTGAATAGATAAGGCAAC 59.379 43.478 0.00 0.00 0.00 4.17
2471 2900 3.867857 TGCGTGTGAATAGATAAGGCAA 58.132 40.909 0.00 0.00 0.00 4.52
2472 2901 3.535280 TGCGTGTGAATAGATAAGGCA 57.465 42.857 0.00 0.00 0.00 4.75
2473 2902 3.248602 CCTTGCGTGTGAATAGATAAGGC 59.751 47.826 0.00 0.00 0.00 4.35
2474 2903 3.809832 CCCTTGCGTGTGAATAGATAAGG 59.190 47.826 0.00 0.00 34.63 2.69
2475 2904 3.809832 CCCCTTGCGTGTGAATAGATAAG 59.190 47.826 0.00 0.00 0.00 1.73
2476 2905 3.804036 CCCCTTGCGTGTGAATAGATAA 58.196 45.455 0.00 0.00 0.00 1.75
2477 2906 2.484770 GCCCCTTGCGTGTGAATAGATA 60.485 50.000 0.00 0.00 0.00 1.98
2478 2907 1.747206 GCCCCTTGCGTGTGAATAGAT 60.747 52.381 0.00 0.00 0.00 1.98
2479 2908 0.392461 GCCCCTTGCGTGTGAATAGA 60.392 55.000 0.00 0.00 0.00 1.98
2480 2909 2.098293 GCCCCTTGCGTGTGAATAG 58.902 57.895 0.00 0.00 0.00 1.73
2481 2910 4.312052 GCCCCTTGCGTGTGAATA 57.688 55.556 0.00 0.00 0.00 1.75
2490 2919 4.847444 GAGGAGAGCGCCCCTTGC 62.847 72.222 13.77 0.00 31.84 4.01
2491 2920 4.168291 GGAGGAGAGCGCCCCTTG 62.168 72.222 13.77 0.00 31.84 3.61
2492 2921 4.722535 TGGAGGAGAGCGCCCCTT 62.723 66.667 13.77 0.00 31.84 3.95
2497 2926 2.543067 AAATGGGTGGAGGAGAGCGC 62.543 60.000 0.00 0.00 0.00 5.92
2498 2927 0.035056 AAAATGGGTGGAGGAGAGCG 60.035 55.000 0.00 0.00 0.00 5.03
2499 2928 2.222227 AAAAATGGGTGGAGGAGAGC 57.778 50.000 0.00 0.00 0.00 4.09
2529 2958 7.770897 ACGGTAGAAAGAGAGATATGCATTTTT 59.229 33.333 3.54 0.00 0.00 1.94
2530 2959 7.275920 ACGGTAGAAAGAGAGATATGCATTTT 58.724 34.615 3.54 0.00 0.00 1.82
2531 2960 6.821388 ACGGTAGAAAGAGAGATATGCATTT 58.179 36.000 3.54 0.00 0.00 2.32
2532 2961 6.412362 ACGGTAGAAAGAGAGATATGCATT 57.588 37.500 3.54 0.00 0.00 3.56
2533 2962 5.335269 CGACGGTAGAAAGAGAGATATGCAT 60.335 44.000 3.79 3.79 0.00 3.96
2534 2963 4.023963 CGACGGTAGAAAGAGAGATATGCA 60.024 45.833 0.00 0.00 0.00 3.96
2535 2964 4.023878 ACGACGGTAGAAAGAGAGATATGC 60.024 45.833 0.00 0.00 0.00 3.14
2536 2965 5.612925 CGACGACGGTAGAAAGAGAGATATG 60.613 48.000 0.00 0.00 35.72 1.78
2537 2966 4.448395 CGACGACGGTAGAAAGAGAGATAT 59.552 45.833 0.00 0.00 35.72 1.63
2538 2967 3.801050 CGACGACGGTAGAAAGAGAGATA 59.199 47.826 0.00 0.00 35.72 1.98
2539 2968 2.608546 CGACGACGGTAGAAAGAGAGAT 59.391 50.000 0.00 0.00 35.72 2.75
2540 2969 1.998315 CGACGACGGTAGAAAGAGAGA 59.002 52.381 0.00 0.00 35.72 3.10
2541 2970 1.529418 GCGACGACGGTAGAAAGAGAG 60.529 57.143 9.67 0.00 40.15 3.20
2542 2971 0.445436 GCGACGACGGTAGAAAGAGA 59.555 55.000 9.67 0.00 40.15 3.10
2543 2972 2.927437 GCGACGACGGTAGAAAGAG 58.073 57.895 9.67 0.00 40.15 2.85
2565 2994 3.639541 AAGAGAGCTGAGTGCCGCG 62.640 63.158 0.00 0.00 44.23 6.46
2566 2995 1.809209 GAAGAGAGCTGAGTGCCGC 60.809 63.158 0.00 0.00 44.23 6.53
2567 2996 1.153667 GGAAGAGAGCTGAGTGCCG 60.154 63.158 0.00 0.00 44.23 5.69
2568 2997 1.220477 GGGAAGAGAGCTGAGTGCC 59.780 63.158 0.00 0.00 44.23 5.01
2569 2998 1.220477 GGGGAAGAGAGCTGAGTGC 59.780 63.158 0.00 0.00 43.29 4.40
2570 2999 0.906756 TGGGGGAAGAGAGCTGAGTG 60.907 60.000 0.00 0.00 0.00 3.51
2571 3000 0.617249 CTGGGGGAAGAGAGCTGAGT 60.617 60.000 0.00 0.00 0.00 3.41
2572 3001 0.617249 ACTGGGGGAAGAGAGCTGAG 60.617 60.000 0.00 0.00 0.00 3.35
2573 3002 0.178891 AACTGGGGGAAGAGAGCTGA 60.179 55.000 0.00 0.00 0.00 4.26
2574 3003 0.035630 CAACTGGGGGAAGAGAGCTG 60.036 60.000 0.00 0.00 0.00 4.24
2575 3004 0.474660 ACAACTGGGGGAAGAGAGCT 60.475 55.000 0.00 0.00 0.00 4.09
2576 3005 0.322008 CACAACTGGGGGAAGAGAGC 60.322 60.000 0.00 0.00 0.00 4.09
2577 3006 0.322008 GCACAACTGGGGGAAGAGAG 60.322 60.000 0.00 0.00 0.00 3.20
2578 3007 1.761174 GCACAACTGGGGGAAGAGA 59.239 57.895 0.00 0.00 0.00 3.10
2579 3008 1.672356 CGCACAACTGGGGGAAGAG 60.672 63.158 0.00 0.00 32.53 2.85
2580 3009 2.429930 CGCACAACTGGGGGAAGA 59.570 61.111 0.00 0.00 32.53 2.87
2581 3010 2.672996 CCGCACAACTGGGGGAAG 60.673 66.667 0.00 0.00 45.06 3.46
2595 3024 2.472909 GGATGTAGTTGCAGGCCGC 61.473 63.158 11.92 11.92 42.89 6.53
2596 3025 1.078497 TGGATGTAGTTGCAGGCCG 60.078 57.895 0.00 0.00 0.00 6.13
2597 3026 0.322456 TGTGGATGTAGTTGCAGGCC 60.322 55.000 0.00 0.00 0.00 5.19
2598 3027 1.402968 CATGTGGATGTAGTTGCAGGC 59.597 52.381 0.00 0.00 0.00 4.85
2599 3028 2.941064 CTCATGTGGATGTAGTTGCAGG 59.059 50.000 0.00 0.00 0.00 4.85
2600 3029 2.941064 CCTCATGTGGATGTAGTTGCAG 59.059 50.000 8.15 0.00 0.00 4.41
2601 3030 2.356022 CCCTCATGTGGATGTAGTTGCA 60.356 50.000 15.47 0.00 0.00 4.08
2602 3031 2.092968 TCCCTCATGTGGATGTAGTTGC 60.093 50.000 15.47 0.00 0.00 4.17
2603 3032 3.432749 CCTCCCTCATGTGGATGTAGTTG 60.433 52.174 15.47 0.00 0.00 3.16
2604 3033 2.774234 CCTCCCTCATGTGGATGTAGTT 59.226 50.000 15.47 0.00 0.00 2.24
2605 3034 2.293184 ACCTCCCTCATGTGGATGTAGT 60.293 50.000 15.47 2.81 30.16 2.73
2606 3035 2.402564 ACCTCCCTCATGTGGATGTAG 58.597 52.381 15.47 6.86 30.16 2.74
2607 3036 2.505407 CAACCTCCCTCATGTGGATGTA 59.495 50.000 15.47 0.00 31.50 2.29
2608 3037 1.283029 CAACCTCCCTCATGTGGATGT 59.717 52.381 15.47 11.31 32.87 3.06
2609 3038 2.020694 GCAACCTCCCTCATGTGGATG 61.021 57.143 15.47 10.73 0.00 3.51
2610 3039 0.257039 GCAACCTCCCTCATGTGGAT 59.743 55.000 15.47 0.00 0.00 3.41
2611 3040 1.685224 GCAACCTCCCTCATGTGGA 59.315 57.895 15.47 10.53 0.00 4.02
2612 3041 1.746615 CGCAACCTCCCTCATGTGG 60.747 63.158 6.84 6.84 0.00 4.17
2613 3042 0.321564 TTCGCAACCTCCCTCATGTG 60.322 55.000 0.00 0.00 0.00 3.21
2614 3043 0.620556 ATTCGCAACCTCCCTCATGT 59.379 50.000 0.00 0.00 0.00 3.21
2615 3044 1.303309 GATTCGCAACCTCCCTCATG 58.697 55.000 0.00 0.00 0.00 3.07
2616 3045 0.179073 CGATTCGCAACCTCCCTCAT 60.179 55.000 0.00 0.00 0.00 2.90
2617 3046 1.218047 CGATTCGCAACCTCCCTCA 59.782 57.895 0.00 0.00 0.00 3.86
2618 3047 0.528684 CTCGATTCGCAACCTCCCTC 60.529 60.000 0.00 0.00 0.00 4.30
2619 3048 1.517832 CTCGATTCGCAACCTCCCT 59.482 57.895 0.00 0.00 0.00 4.20
2620 3049 1.521681 CCTCGATTCGCAACCTCCC 60.522 63.158 0.00 0.00 0.00 4.30
2621 3050 1.521681 CCCTCGATTCGCAACCTCC 60.522 63.158 0.00 0.00 0.00 4.30
2622 3051 1.521681 CCCCTCGATTCGCAACCTC 60.522 63.158 0.00 0.00 0.00 3.85
2623 3052 2.584608 CCCCTCGATTCGCAACCT 59.415 61.111 0.00 0.00 0.00 3.50
2624 3053 2.513897 CCCCCTCGATTCGCAACC 60.514 66.667 0.00 0.00 0.00 3.77
2625 3054 1.814169 GTCCCCCTCGATTCGCAAC 60.814 63.158 0.00 0.00 0.00 4.17
2626 3055 1.987855 AGTCCCCCTCGATTCGCAA 60.988 57.895 0.00 0.00 0.00 4.85
2627 3056 2.363795 AGTCCCCCTCGATTCGCA 60.364 61.111 0.00 0.00 0.00 5.10
2628 3057 2.107141 CAGTCCCCCTCGATTCGC 59.893 66.667 0.00 0.00 0.00 4.70
2629 3058 2.107141 GCAGTCCCCCTCGATTCG 59.893 66.667 0.00 0.00 0.00 3.34
2630 3059 1.144936 CTGCAGTCCCCCTCGATTC 59.855 63.158 5.25 0.00 0.00 2.52
2631 3060 1.613630 ACTGCAGTCCCCCTCGATT 60.614 57.895 15.25 0.00 0.00 3.34
2632 3061 2.039624 ACTGCAGTCCCCCTCGAT 59.960 61.111 15.25 0.00 0.00 3.59
2633 3062 2.997315 CACTGCAGTCCCCCTCGA 60.997 66.667 18.64 0.00 0.00 4.04
2634 3063 4.767255 GCACTGCAGTCCCCCTCG 62.767 72.222 18.64 4.93 0.00 4.63
2635 3064 2.976490 ATGCACTGCAGTCCCCCTC 61.976 63.158 18.64 2.76 43.65 4.30
2636 3065 2.937689 ATGCACTGCAGTCCCCCT 60.938 61.111 18.64 0.00 43.65 4.79
2637 3066 2.753043 CATGCACTGCAGTCCCCC 60.753 66.667 18.64 6.39 43.65 5.40
2638 3067 2.042831 GTCATGCACTGCAGTCCCC 61.043 63.158 18.64 9.05 43.65 4.81
2639 3068 2.393768 CGTCATGCACTGCAGTCCC 61.394 63.158 18.64 11.76 43.65 4.46
2640 3069 3.031964 GCGTCATGCACTGCAGTCC 62.032 63.158 18.64 9.14 43.65 3.85
2641 3070 2.477845 GCGTCATGCACTGCAGTC 59.522 61.111 18.64 12.59 43.65 3.51
2643 3072 3.807538 GGGCGTCATGCACTGCAG 61.808 66.667 13.48 13.48 46.33 4.41
2659 3088 4.992294 CGCAAAAACACCCCGCGG 62.992 66.667 21.04 21.04 42.13 6.46
2660 3089 4.992294 CCGCAAAAACACCCCGCG 62.992 66.667 0.00 0.00 45.25 6.46
2662 3091 4.992294 CGCCGCAAAAACACCCCG 62.992 66.667 0.00 0.00 0.00 5.73
2663 3092 3.597728 TCGCCGCAAAAACACCCC 61.598 61.111 0.00 0.00 0.00 4.95
2664 3093 2.354188 GTCGCCGCAAAAACACCC 60.354 61.111 0.00 0.00 0.00 4.61
2665 3094 1.657181 CTGTCGCCGCAAAAACACC 60.657 57.895 0.00 0.00 0.00 4.16
2666 3095 0.657368 CTCTGTCGCCGCAAAAACAC 60.657 55.000 0.00 0.00 0.00 3.32
2667 3096 1.646540 CTCTGTCGCCGCAAAAACA 59.353 52.632 0.00 0.00 0.00 2.83
2668 3097 1.082104 CCTCTGTCGCCGCAAAAAC 60.082 57.895 0.00 0.00 0.00 2.43
2669 3098 2.258013 CCCTCTGTCGCCGCAAAAA 61.258 57.895 0.00 0.00 0.00 1.94
2670 3099 2.668212 CCCTCTGTCGCCGCAAAA 60.668 61.111 0.00 0.00 0.00 2.44
2671 3100 4.697756 CCCCTCTGTCGCCGCAAA 62.698 66.667 0.00 0.00 0.00 3.68
2677 3106 4.373116 TCGTTGCCCCTCTGTCGC 62.373 66.667 0.00 0.00 0.00 5.19
2678 3107 2.125912 CTCGTTGCCCCTCTGTCG 60.126 66.667 0.00 0.00 0.00 4.35
2679 3108 1.216710 CTCTCGTTGCCCCTCTGTC 59.783 63.158 0.00 0.00 0.00 3.51
2680 3109 2.286523 CCTCTCGTTGCCCCTCTGT 61.287 63.158 0.00 0.00 0.00 3.41
2681 3110 2.286523 ACCTCTCGTTGCCCCTCTG 61.287 63.158 0.00 0.00 0.00 3.35
2682 3111 2.120718 ACCTCTCGTTGCCCCTCT 59.879 61.111 0.00 0.00 0.00 3.69
2683 3112 2.266055 CACCTCTCGTTGCCCCTC 59.734 66.667 0.00 0.00 0.00 4.30
2684 3113 3.322466 CCACCTCTCGTTGCCCCT 61.322 66.667 0.00 0.00 0.00 4.79
2685 3114 2.804828 CTTCCACCTCTCGTTGCCCC 62.805 65.000 0.00 0.00 0.00 5.80
2686 3115 1.376037 CTTCCACCTCTCGTTGCCC 60.376 63.158 0.00 0.00 0.00 5.36
2687 3116 0.034896 TTCTTCCACCTCTCGTTGCC 59.965 55.000 0.00 0.00 0.00 4.52
2688 3117 1.433534 CTTCTTCCACCTCTCGTTGC 58.566 55.000 0.00 0.00 0.00 4.17
2689 3118 1.270305 TGCTTCTTCCACCTCTCGTTG 60.270 52.381 0.00 0.00 0.00 4.10
2690 3119 1.048601 TGCTTCTTCCACCTCTCGTT 58.951 50.000 0.00 0.00 0.00 3.85
2691 3120 1.048601 TTGCTTCTTCCACCTCTCGT 58.951 50.000 0.00 0.00 0.00 4.18
2692 3121 1.270305 TGTTGCTTCTTCCACCTCTCG 60.270 52.381 0.00 0.00 0.00 4.04
2693 3122 2.037772 TCTGTTGCTTCTTCCACCTCTC 59.962 50.000 0.00 0.00 0.00 3.20
2694 3123 2.050144 TCTGTTGCTTCTTCCACCTCT 58.950 47.619 0.00 0.00 0.00 3.69
2695 3124 2.550830 TCTGTTGCTTCTTCCACCTC 57.449 50.000 0.00 0.00 0.00 3.85
2696 3125 3.515602 ATTCTGTTGCTTCTTCCACCT 57.484 42.857 0.00 0.00 0.00 4.00
2697 3126 5.705609 TTTATTCTGTTGCTTCTTCCACC 57.294 39.130 0.00 0.00 0.00 4.61
2698 3127 7.425606 TCTTTTTATTCTGTTGCTTCTTCCAC 58.574 34.615 0.00 0.00 0.00 4.02
2699 3128 7.581213 TCTTTTTATTCTGTTGCTTCTTCCA 57.419 32.000 0.00 0.00 0.00 3.53
2700 3129 9.780413 CTATCTTTTTATTCTGTTGCTTCTTCC 57.220 33.333 0.00 0.00 0.00 3.46
2701 3130 9.780413 CCTATCTTTTTATTCTGTTGCTTCTTC 57.220 33.333 0.00 0.00 0.00 2.87
2702 3131 9.520515 TCCTATCTTTTTATTCTGTTGCTTCTT 57.479 29.630 0.00 0.00 0.00 2.52
2703 3132 9.171877 CTCCTATCTTTTTATTCTGTTGCTTCT 57.828 33.333 0.00 0.00 0.00 2.85
2704 3133 9.167311 TCTCCTATCTTTTTATTCTGTTGCTTC 57.833 33.333 0.00 0.00 0.00 3.86
2705 3134 9.692325 ATCTCCTATCTTTTTATTCTGTTGCTT 57.308 29.630 0.00 0.00 0.00 3.91
2706 3135 9.336171 GATCTCCTATCTTTTTATTCTGTTGCT 57.664 33.333 0.00 0.00 0.00 3.91
2707 3136 8.563732 GGATCTCCTATCTTTTTATTCTGTTGC 58.436 37.037 0.00 0.00 0.00 4.17
2708 3137 9.844257 AGGATCTCCTATCTTTTTATTCTGTTG 57.156 33.333 0.00 0.00 46.48 3.33
2726 3155 2.298729 GACACTCAGCCATAGGATCTCC 59.701 54.545 0.00 0.00 0.00 3.71
2727 3156 2.961741 TGACACTCAGCCATAGGATCTC 59.038 50.000 0.00 0.00 0.00 2.75
2728 3157 3.037851 TGACACTCAGCCATAGGATCT 57.962 47.619 0.00 0.00 0.00 2.75
2729 3158 3.323115 TCATGACACTCAGCCATAGGATC 59.677 47.826 0.00 0.00 0.00 3.36
2730 3159 3.311990 TCATGACACTCAGCCATAGGAT 58.688 45.455 0.00 0.00 0.00 3.24
2731 3160 2.697229 CTCATGACACTCAGCCATAGGA 59.303 50.000 0.00 0.00 0.00 2.94
2732 3161 2.697229 TCTCATGACACTCAGCCATAGG 59.303 50.000 0.00 0.00 0.00 2.57
2733 3162 4.558178 GATCTCATGACACTCAGCCATAG 58.442 47.826 0.00 0.00 0.00 2.23
2734 3163 3.323115 GGATCTCATGACACTCAGCCATA 59.677 47.826 0.00 0.00 0.00 2.74
2735 3164 2.104451 GGATCTCATGACACTCAGCCAT 59.896 50.000 0.00 0.00 0.00 4.40
2736 3165 1.483827 GGATCTCATGACACTCAGCCA 59.516 52.381 0.00 0.00 0.00 4.75
2737 3166 1.483827 TGGATCTCATGACACTCAGCC 59.516 52.381 0.00 0.00 0.00 4.85
2738 3167 2.823984 CTGGATCTCATGACACTCAGC 58.176 52.381 0.00 0.00 0.00 4.26
2739 3168 2.167900 TGCTGGATCTCATGACACTCAG 59.832 50.000 0.00 0.00 0.00 3.35
2740 3169 2.167900 CTGCTGGATCTCATGACACTCA 59.832 50.000 0.00 0.00 0.00 3.41
2741 3170 2.823984 CTGCTGGATCTCATGACACTC 58.176 52.381 0.00 0.00 0.00 3.51
2742 3171 1.134461 GCTGCTGGATCTCATGACACT 60.134 52.381 0.00 0.00 0.00 3.55
2743 3172 1.134461 AGCTGCTGGATCTCATGACAC 60.134 52.381 0.00 0.00 0.00 3.67
2744 3173 1.201424 AGCTGCTGGATCTCATGACA 58.799 50.000 0.00 0.00 0.00 3.58
2745 3174 3.029320 CTAGCTGCTGGATCTCATGAC 57.971 52.381 13.43 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.