Multiple sequence alignment - TraesCS7A01G027500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G027500 chr7A 100.000 2995 0 0 1 2995 10992795 10995789 0.000000e+00 5531
1 TraesCS7A01G027500 chr7A 96.380 1630 56 3 891 2520 15520956 15519330 0.000000e+00 2680
2 TraesCS7A01G027500 chr7A 95.177 1638 70 9 888 2521 41971275 41972907 0.000000e+00 2579
3 TraesCS7A01G027500 chr7A 95.137 473 18 4 2525 2995 15510134 15509665 0.000000e+00 741
4 TraesCS7A01G027500 chr7A 94.713 435 17 6 2 434 15521943 15521513 0.000000e+00 671
5 TraesCS7A01G027500 chr2A 97.750 2089 43 4 432 2520 30580542 30582626 0.000000e+00 3594
6 TraesCS7A01G027500 chr2A 96.459 2090 68 6 432 2520 613690 611606 0.000000e+00 3445
7 TraesCS7A01G027500 chr2A 96.815 471 13 1 2525 2995 589185 588717 0.000000e+00 785
8 TraesCS7A01G027500 chr2A 95.966 471 17 2 2525 2995 30591953 30592421 0.000000e+00 763
9 TraesCS7A01G027500 chr2A 96.544 434 10 5 1 434 614160 613732 0.000000e+00 713
10 TraesCS7A01G027500 chr2A 96.092 435 10 7 1 432 30580070 30580500 0.000000e+00 702
11 TraesCS7A01G027500 chr5A 97.333 2100 31 11 432 2511 153575426 153573332 0.000000e+00 3544
12 TraesCS7A01G027500 chr5A 98.726 471 6 0 2525 2995 153563759 153563289 0.000000e+00 837
13 TraesCS7A01G027500 chr5A 97.917 432 7 2 1 432 153575899 153575470 0.000000e+00 747
14 TraesCS7A01G027500 chr4A 96.746 2090 43 9 432 2520 600513846 600511781 0.000000e+00 3459
15 TraesCS7A01G027500 chr4A 98.305 472 7 1 2525 2995 600480481 600480010 0.000000e+00 826
16 TraesCS7A01G027500 chr4A 97.222 432 11 1 1 432 600514320 600513890 0.000000e+00 730
17 TraesCS7A01G027500 chr6A 96.196 1630 56 6 891 2520 555103859 555102236 0.000000e+00 2662
18 TraesCS7A01G027500 chr6A 95.703 1629 66 4 893 2520 602796925 602795300 0.000000e+00 2617
19 TraesCS7A01G027500 chr6A 95.577 1628 68 4 893 2520 597466971 597465348 0.000000e+00 2604
20 TraesCS7A01G027500 chr6A 95.772 473 15 3 2525 2995 602785859 602785390 0.000000e+00 758
21 TraesCS7A01G027500 chr6A 95.117 471 20 2 2525 2995 555092840 555092373 0.000000e+00 739
22 TraesCS7A01G027500 chr6A 95.622 434 15 4 1 434 555104846 555104417 0.000000e+00 693
23 TraesCS7A01G027500 chr6A 93.913 460 23 3 432 888 555104375 555103918 0.000000e+00 689
24 TraesCS7A01G027500 chr3A 98.417 1074 16 1 1 1074 38169631 38170703 0.000000e+00 1888
25 TraesCS7A01G027500 chr3A 98.517 472 6 1 2525 2995 38194931 38195402 0.000000e+00 832
26 TraesCS7A01G027500 chr3A 95.772 473 15 4 2525 2995 17902256 17901787 0.000000e+00 758
27 TraesCS7A01G027500 chr3A 95.172 435 16 5 1 434 17914062 17913632 0.000000e+00 682
28 TraesCS7A01G027500 chr7B 94.713 435 19 4 1 434 599829230 599829661 0.000000e+00 673
29 TraesCS7A01G027500 chr2B 93.028 459 29 3 428 886 670327468 670327923 0.000000e+00 667
30 TraesCS7A01G027500 chr2B 87.282 574 46 17 337 886 717673695 717673125 5.450000e-177 630
31 TraesCS7A01G027500 chr2B 86.585 574 50 15 337 886 738148256 738148826 2.550000e-170 608
32 TraesCS7A01G027500 chr6B 92.140 458 31 5 432 888 353551864 353551411 2.520000e-180 641


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G027500 chr7A 10992795 10995789 2994 False 5531.0 5531 100.000000 1 2995 1 chr7A.!!$F1 2994
1 TraesCS7A01G027500 chr7A 41971275 41972907 1632 False 2579.0 2579 95.177000 888 2521 1 chr7A.!!$F2 1633
2 TraesCS7A01G027500 chr7A 15519330 15521943 2613 True 1675.5 2680 95.546500 2 2520 2 chr7A.!!$R2 2518
3 TraesCS7A01G027500 chr2A 30580070 30582626 2556 False 2148.0 3594 96.921000 1 2520 2 chr2A.!!$F2 2519
4 TraesCS7A01G027500 chr2A 611606 614160 2554 True 2079.0 3445 96.501500 1 2520 2 chr2A.!!$R2 2519
5 TraesCS7A01G027500 chr5A 153573332 153575899 2567 True 2145.5 3544 97.625000 1 2511 2 chr5A.!!$R2 2510
6 TraesCS7A01G027500 chr4A 600511781 600514320 2539 True 2094.5 3459 96.984000 1 2520 2 chr4A.!!$R2 2519
7 TraesCS7A01G027500 chr6A 602795300 602796925 1625 True 2617.0 2617 95.703000 893 2520 1 chr6A.!!$R4 1627
8 TraesCS7A01G027500 chr6A 597465348 597466971 1623 True 2604.0 2604 95.577000 893 2520 1 chr6A.!!$R2 1627
9 TraesCS7A01G027500 chr6A 555102236 555104846 2610 True 1348.0 2662 95.243667 1 2520 3 chr6A.!!$R5 2519
10 TraesCS7A01G027500 chr3A 38169631 38170703 1072 False 1888.0 1888 98.417000 1 1074 1 chr3A.!!$F1 1073
11 TraesCS7A01G027500 chr2B 717673125 717673695 570 True 630.0 630 87.282000 337 886 1 chr2B.!!$R1 549
12 TraesCS7A01G027500 chr2B 738148256 738148826 570 False 608.0 608 86.585000 337 886 1 chr2B.!!$F2 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
824 923 1.506309 CTGGTGTGCTTGCGTTGCTA 61.506 55.0 0.0 0.0 0.0 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2600 2782 0.107508 ACGACCTTGCATCTCATGGG 60.108 55.0 0.0 0.0 42.58 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
178 182 6.453092 AGACAGTTGCGTAGTACAATTTACT 58.547 36.000 0.38 5.87 0.00 2.24
341 347 5.116074 CAGCTGCGAAACATTACTTCAAAAG 59.884 40.000 0.00 0.00 0.00 2.27
586 681 7.690952 AATCAAATGTTGCCTGCATTTAAAT 57.309 28.000 9.02 0.00 42.54 1.40
799 898 7.047891 CCTGGTTATGTTCAACTGCTATCTTA 58.952 38.462 0.00 0.00 0.00 2.10
824 923 1.506309 CTGGTGTGCTTGCGTTGCTA 61.506 55.000 0.00 0.00 0.00 3.49
829 928 2.095969 GTGTGCTTGCGTTGCTATGTTA 60.096 45.455 0.00 0.00 0.00 2.41
1266 1421 0.251354 CAGGTGCTGCAGGTGATACT 59.749 55.000 17.12 0.00 0.00 2.12
1315 1470 5.035443 GTGCTGAAAATGATGATGAAGCTC 58.965 41.667 0.00 0.00 0.00 4.09
1952 2110 3.825143 AGTGCCTGTTTTTGCTTGAAT 57.175 38.095 0.00 0.00 0.00 2.57
2011 2170 5.252547 TGCTTGATAGTGCCACTAAATTGA 58.747 37.500 8.93 0.00 33.89 2.57
2058 2217 9.435688 AATAAATTGCCTAATTTGTTTCTGGAC 57.564 29.630 7.94 0.00 41.71 4.02
2159 2336 3.023119 TGGTGTTGAATGTGAACTTGCT 58.977 40.909 0.00 0.00 0.00 3.91
2347 2528 4.034510 GCTTGTATAGCTTCGTGAATTGCT 59.965 41.667 0.00 2.51 46.77 3.91
2468 2650 3.000041 GTCAACAGGTCGTATGATGCAA 59.000 45.455 0.00 0.00 0.00 4.08
2488 2670 7.868906 TGCAAATCATGTCAGATTTCTATGA 57.131 32.000 0.00 0.00 44.16 2.15
2512 2694 7.039011 TGAGACAGAACTCATTGTACCTTATGT 60.039 37.037 0.00 0.00 41.21 2.29
2516 2698 6.873605 CAGAACTCATTGTACCTTATGTCACA 59.126 38.462 0.00 0.00 0.00 3.58
2517 2699 7.550551 CAGAACTCATTGTACCTTATGTCACAT 59.449 37.037 0.00 0.00 0.00 3.21
2519 2701 9.378551 GAACTCATTGTACCTTATGTCACATAA 57.621 33.333 9.92 9.92 0.00 1.90
2520 2702 8.948631 ACTCATTGTACCTTATGTCACATAAG 57.051 34.615 25.28 25.28 0.00 1.73
2521 2703 8.540388 ACTCATTGTACCTTATGTCACATAAGT 58.460 33.333 28.26 20.49 31.47 2.24
2522 2704 8.942338 TCATTGTACCTTATGTCACATAAGTC 57.058 34.615 28.26 20.12 31.47 3.01
2523 2705 8.758829 TCATTGTACCTTATGTCACATAAGTCT 58.241 33.333 28.26 18.45 31.47 3.24
2527 2709 9.865321 TGTACCTTATGTCACATAAGTCTAAAC 57.135 33.333 28.26 19.79 31.47 2.01
2528 2710 9.865321 GTACCTTATGTCACATAAGTCTAAACA 57.135 33.333 28.26 8.89 31.47 2.83
2530 2712 9.787435 ACCTTATGTCACATAAGTCTAAACAAA 57.213 29.630 28.26 0.00 31.47 2.83
2535 2717 8.365399 TGTCACATAAGTCTAAACAAACTCTG 57.635 34.615 0.00 0.00 0.00 3.35
2536 2718 7.985184 TGTCACATAAGTCTAAACAAACTCTGT 59.015 33.333 0.00 0.00 41.27 3.41
2560 2742 9.787435 TGTTATGTACAGGAAGAACATAAAACT 57.213 29.630 0.33 0.00 43.78 2.66
2569 2751 6.560253 GAAGAACATAAAACTTCCTGAGCA 57.440 37.500 0.00 0.00 35.45 4.26
2570 2752 7.150783 GAAGAACATAAAACTTCCTGAGCAT 57.849 36.000 0.00 0.00 35.45 3.79
2571 2753 6.506500 AGAACATAAAACTTCCTGAGCATG 57.493 37.500 0.00 0.00 0.00 4.06
2572 2754 6.006449 AGAACATAAAACTTCCTGAGCATGT 58.994 36.000 0.00 0.00 0.00 3.21
2573 2755 5.633830 ACATAAAACTTCCTGAGCATGTG 57.366 39.130 0.00 0.00 0.00 3.21
2574 2756 4.082571 ACATAAAACTTCCTGAGCATGTGC 60.083 41.667 0.00 0.00 42.49 4.57
2575 2757 1.985473 AAACTTCCTGAGCATGTGCA 58.015 45.000 7.83 0.00 45.16 4.57
2576 2758 1.242076 AACTTCCTGAGCATGTGCAC 58.758 50.000 10.75 10.75 45.16 4.57
2577 2759 0.109153 ACTTCCTGAGCATGTGCACA 59.891 50.000 24.08 24.08 45.16 4.57
2578 2760 0.520404 CTTCCTGAGCATGTGCACAC 59.480 55.000 24.37 10.87 45.16 3.82
2579 2761 0.890542 TTCCTGAGCATGTGCACACC 60.891 55.000 24.37 16.30 45.16 4.16
2580 2762 1.303074 CCTGAGCATGTGCACACCT 60.303 57.895 24.37 21.00 45.16 4.00
2581 2763 1.583495 CCTGAGCATGTGCACACCTG 61.583 60.000 24.37 18.83 45.16 4.00
2582 2764 0.887836 CTGAGCATGTGCACACCTGT 60.888 55.000 24.37 7.14 45.16 4.00
2592 2774 2.637521 CACACCTGTGCTTGATGCT 58.362 52.632 0.00 0.00 43.37 3.79
2593 2775 0.520404 CACACCTGTGCTTGATGCTC 59.480 55.000 0.00 0.00 43.37 4.26
2594 2776 0.399454 ACACCTGTGCTTGATGCTCT 59.601 50.000 0.00 0.00 43.37 4.09
2595 2777 1.202855 ACACCTGTGCTTGATGCTCTT 60.203 47.619 0.00 0.00 43.37 2.85
2596 2778 1.467734 CACCTGTGCTTGATGCTCTTC 59.532 52.381 0.00 0.00 43.37 2.87
2597 2779 1.072806 ACCTGTGCTTGATGCTCTTCA 59.927 47.619 0.00 0.00 43.37 3.02
2598 2780 2.290768 ACCTGTGCTTGATGCTCTTCAT 60.291 45.455 0.00 0.00 43.37 2.57
2599 2781 2.753452 CCTGTGCTTGATGCTCTTCATT 59.247 45.455 0.00 0.00 43.37 2.57
2600 2782 3.181499 CCTGTGCTTGATGCTCTTCATTC 60.181 47.826 0.00 0.00 43.37 2.67
2601 2783 2.751259 TGTGCTTGATGCTCTTCATTCC 59.249 45.455 0.00 0.00 43.37 3.01
2602 2784 2.098770 GTGCTTGATGCTCTTCATTCCC 59.901 50.000 0.00 0.00 43.37 3.97
2603 2785 2.291089 TGCTTGATGCTCTTCATTCCCA 60.291 45.455 0.00 0.00 43.37 4.37
2604 2786 2.957006 GCTTGATGCTCTTCATTCCCAT 59.043 45.455 0.00 0.00 38.95 4.00
2605 2787 3.243434 GCTTGATGCTCTTCATTCCCATG 60.243 47.826 0.00 0.00 38.95 3.66
2606 2788 3.937778 TGATGCTCTTCATTCCCATGA 57.062 42.857 0.00 0.00 37.67 3.07
2607 2789 3.816994 TGATGCTCTTCATTCCCATGAG 58.183 45.455 0.00 0.00 40.66 2.90
2608 2790 3.457012 TGATGCTCTTCATTCCCATGAGA 59.543 43.478 0.00 0.00 40.66 3.27
2609 2791 4.104261 TGATGCTCTTCATTCCCATGAGAT 59.896 41.667 0.00 0.00 40.66 2.75
2610 2792 3.816994 TGCTCTTCATTCCCATGAGATG 58.183 45.455 0.00 0.00 40.66 2.90
2611 2793 2.553172 GCTCTTCATTCCCATGAGATGC 59.447 50.000 0.00 0.00 40.66 3.91
2612 2794 3.816994 CTCTTCATTCCCATGAGATGCA 58.183 45.455 0.00 0.00 40.66 3.96
2613 2795 4.204799 CTCTTCATTCCCATGAGATGCAA 58.795 43.478 0.00 0.00 40.66 4.08
2614 2796 4.204799 TCTTCATTCCCATGAGATGCAAG 58.795 43.478 0.00 2.61 40.66 4.01
2615 2797 2.940158 TCATTCCCATGAGATGCAAGG 58.060 47.619 0.00 0.00 34.22 3.61
2616 2798 2.242965 TCATTCCCATGAGATGCAAGGT 59.757 45.455 0.00 0.00 34.22 3.50
2617 2799 2.425143 TTCCCATGAGATGCAAGGTC 57.575 50.000 0.00 0.00 33.49 3.85
2618 2800 0.178767 TCCCATGAGATGCAAGGTCG 59.821 55.000 0.00 0.00 33.49 4.79
2619 2801 0.107508 CCCATGAGATGCAAGGTCGT 60.108 55.000 0.00 0.00 33.49 4.34
2620 2802 1.293924 CCATGAGATGCAAGGTCGTC 58.706 55.000 0.00 0.00 30.74 4.20
2621 2803 1.405933 CCATGAGATGCAAGGTCGTCA 60.406 52.381 0.00 0.00 30.74 4.35
2622 2804 2.558378 CATGAGATGCAAGGTCGTCAT 58.442 47.619 0.00 0.00 0.00 3.06
2623 2805 2.014335 TGAGATGCAAGGTCGTCATG 57.986 50.000 0.00 0.00 0.00 3.07
2624 2806 1.550072 TGAGATGCAAGGTCGTCATGA 59.450 47.619 0.00 0.00 0.00 3.07
2635 2817 1.929836 GTCGTCATGACTTGATCCAGC 59.070 52.381 22.95 0.00 44.58 4.85
2636 2818 1.550072 TCGTCATGACTTGATCCAGCA 59.450 47.619 22.95 0.00 36.54 4.41
2637 2819 1.931841 CGTCATGACTTGATCCAGCAG 59.068 52.381 22.95 0.00 36.54 4.24
2638 2820 2.286872 GTCATGACTTGATCCAGCAGG 58.713 52.381 18.83 0.00 36.54 4.85
2639 2821 1.911357 TCATGACTTGATCCAGCAGGT 59.089 47.619 0.00 0.00 35.89 4.00
2640 2822 2.093288 TCATGACTTGATCCAGCAGGTC 60.093 50.000 0.41 0.41 43.00 3.85
2641 2823 0.615331 TGACTTGATCCAGCAGGTCC 59.385 55.000 4.81 0.00 42.29 4.46
2642 2824 0.615331 GACTTGATCCAGCAGGTCCA 59.385 55.000 0.00 0.00 38.51 4.02
2643 2825 1.211457 GACTTGATCCAGCAGGTCCAT 59.789 52.381 0.00 0.00 38.51 3.41
2644 2826 1.211457 ACTTGATCCAGCAGGTCCATC 59.789 52.381 0.00 0.00 35.89 3.51
2645 2827 0.548031 TTGATCCAGCAGGTCCATCC 59.452 55.000 0.00 0.00 35.89 3.51
2659 2841 6.240549 AGGTCCATCCTGTTTAGACTTATG 57.759 41.667 0.00 0.00 46.19 1.90
2660 2842 5.964477 AGGTCCATCCTGTTTAGACTTATGA 59.036 40.000 0.00 0.00 46.19 2.15
2661 2843 6.049790 GGTCCATCCTGTTTAGACTTATGAC 58.950 44.000 0.00 0.00 0.00 3.06
2662 2844 6.127026 GGTCCATCCTGTTTAGACTTATGACT 60.127 42.308 0.00 0.00 0.00 3.41
2663 2845 7.331791 GTCCATCCTGTTTAGACTTATGACTT 58.668 38.462 0.00 0.00 0.00 3.01
2664 2846 7.278868 GTCCATCCTGTTTAGACTTATGACTTG 59.721 40.741 0.00 0.00 0.00 3.16
2665 2847 7.038302 TCCATCCTGTTTAGACTTATGACTTGT 60.038 37.037 0.00 0.00 0.00 3.16
2666 2848 7.278868 CCATCCTGTTTAGACTTATGACTTGTC 59.721 40.741 0.00 0.00 0.00 3.18
2667 2849 6.698380 TCCTGTTTAGACTTATGACTTGTCC 58.302 40.000 0.00 0.00 0.00 4.02
2668 2850 5.875359 CCTGTTTAGACTTATGACTTGTCCC 59.125 44.000 0.00 0.00 0.00 4.46
2669 2851 6.428083 TGTTTAGACTTATGACTTGTCCCA 57.572 37.500 0.00 0.00 0.00 4.37
2670 2852 6.464222 TGTTTAGACTTATGACTTGTCCCAG 58.536 40.000 0.00 0.00 0.00 4.45
2671 2853 3.618690 AGACTTATGACTTGTCCCAGC 57.381 47.619 0.00 0.00 0.00 4.85
2672 2854 2.237392 AGACTTATGACTTGTCCCAGCC 59.763 50.000 0.00 0.00 0.00 4.85
2673 2855 1.985159 ACTTATGACTTGTCCCAGCCA 59.015 47.619 0.00 0.00 0.00 4.75
2674 2856 2.578021 ACTTATGACTTGTCCCAGCCAT 59.422 45.455 0.00 0.00 0.00 4.40
2675 2857 3.209410 CTTATGACTTGTCCCAGCCATC 58.791 50.000 0.00 0.00 0.00 3.51
2676 2858 1.293062 ATGACTTGTCCCAGCCATCT 58.707 50.000 0.00 0.00 0.00 2.90
2677 2859 1.951209 TGACTTGTCCCAGCCATCTA 58.049 50.000 0.00 0.00 0.00 1.98
2678 2860 2.481441 TGACTTGTCCCAGCCATCTAT 58.519 47.619 0.00 0.00 0.00 1.98
2679 2861 2.846206 TGACTTGTCCCAGCCATCTATT 59.154 45.455 0.00 0.00 0.00 1.73
2680 2862 3.266772 TGACTTGTCCCAGCCATCTATTT 59.733 43.478 0.00 0.00 0.00 1.40
2681 2863 4.263905 TGACTTGTCCCAGCCATCTATTTT 60.264 41.667 0.00 0.00 0.00 1.82
2682 2864 4.273318 ACTTGTCCCAGCCATCTATTTTC 58.727 43.478 0.00 0.00 0.00 2.29
2683 2865 4.018050 ACTTGTCCCAGCCATCTATTTTCT 60.018 41.667 0.00 0.00 0.00 2.52
2684 2866 3.889815 TGTCCCAGCCATCTATTTTCTG 58.110 45.455 0.00 0.00 0.00 3.02
2685 2867 2.620585 GTCCCAGCCATCTATTTTCTGC 59.379 50.000 0.00 0.00 0.00 4.26
2686 2868 2.511218 TCCCAGCCATCTATTTTCTGCT 59.489 45.455 0.00 0.00 0.00 4.24
2687 2869 2.621998 CCCAGCCATCTATTTTCTGCTG 59.378 50.000 0.00 0.00 44.32 4.41
2688 2870 2.034305 CCAGCCATCTATTTTCTGCTGC 59.966 50.000 0.00 0.00 43.59 5.25
2689 2871 2.686405 CAGCCATCTATTTTCTGCTGCA 59.314 45.455 0.88 0.88 39.63 4.41
2690 2872 3.318275 CAGCCATCTATTTTCTGCTGCAT 59.682 43.478 1.31 0.00 39.63 3.96
2691 2873 4.517832 CAGCCATCTATTTTCTGCTGCATA 59.482 41.667 1.31 0.00 39.63 3.14
2692 2874 5.183331 CAGCCATCTATTTTCTGCTGCATAT 59.817 40.000 1.31 0.00 39.63 1.78
2693 2875 5.773680 AGCCATCTATTTTCTGCTGCATATT 59.226 36.000 1.31 0.00 0.00 1.28
2694 2876 6.267014 AGCCATCTATTTTCTGCTGCATATTT 59.733 34.615 1.31 0.00 0.00 1.40
2695 2877 7.449395 AGCCATCTATTTTCTGCTGCATATTTA 59.551 33.333 1.31 0.00 0.00 1.40
2696 2878 8.084073 GCCATCTATTTTCTGCTGCATATTTAA 58.916 33.333 1.31 0.00 0.00 1.52
2697 2879 9.970395 CCATCTATTTTCTGCTGCATATTTAAA 57.030 29.630 1.31 0.39 0.00 1.52
2703 2885 9.709495 ATTTTCTGCTGCATATTTAAAAGACAA 57.291 25.926 1.31 0.00 0.00 3.18
2704 2886 9.539825 TTTTCTGCTGCATATTTAAAAGACAAA 57.460 25.926 1.31 0.00 0.00 2.83
2705 2887 9.539825 TTTCTGCTGCATATTTAAAAGACAAAA 57.460 25.926 1.31 0.00 0.00 2.44
2706 2888 8.519492 TCTGCTGCATATTTAAAAGACAAAAC 57.481 30.769 1.31 0.00 0.00 2.43
2707 2889 8.140628 TCTGCTGCATATTTAAAAGACAAAACA 58.859 29.630 1.31 0.00 0.00 2.83
2708 2890 8.296799 TGCTGCATATTTAAAAGACAAAACAG 57.703 30.769 0.00 0.00 0.00 3.16
2709 2891 7.925483 TGCTGCATATTTAAAAGACAAAACAGT 59.075 29.630 0.00 0.00 0.00 3.55
2710 2892 8.216453 GCTGCATATTTAAAAGACAAAACAGTG 58.784 33.333 0.00 0.00 0.00 3.66
2711 2893 9.462174 CTGCATATTTAAAAGACAAAACAGTGA 57.538 29.630 0.00 0.00 0.00 3.41
2712 2894 9.462174 TGCATATTTAAAAGACAAAACAGTGAG 57.538 29.630 0.00 0.00 0.00 3.51
2713 2895 9.677567 GCATATTTAAAAGACAAAACAGTGAGA 57.322 29.630 0.00 0.00 0.00 3.27
2719 2901 9.950680 TTAAAAGACAAAACAGTGAGATTCATC 57.049 29.630 0.00 0.00 0.00 2.92
2720 2902 7.572523 AAAGACAAAACAGTGAGATTCATCA 57.427 32.000 0.00 0.00 0.00 3.07
2721 2903 7.756395 AAGACAAAACAGTGAGATTCATCAT 57.244 32.000 0.00 0.00 0.00 2.45
2722 2904 8.853077 AAGACAAAACAGTGAGATTCATCATA 57.147 30.769 0.00 0.00 0.00 2.15
2723 2905 8.853077 AGACAAAACAGTGAGATTCATCATAA 57.147 30.769 0.00 0.00 0.00 1.90
2724 2906 9.288576 AGACAAAACAGTGAGATTCATCATAAA 57.711 29.630 0.00 0.00 0.00 1.40
2725 2907 9.897744 GACAAAACAGTGAGATTCATCATAAAA 57.102 29.630 0.00 0.00 0.00 1.52
2728 2910 8.976986 AAACAGTGAGATTCATCATAAAAAGC 57.023 30.769 0.00 0.00 0.00 3.51
2729 2911 7.692460 ACAGTGAGATTCATCATAAAAAGCA 57.308 32.000 0.00 0.00 0.00 3.91
2730 2912 7.533426 ACAGTGAGATTCATCATAAAAAGCAC 58.467 34.615 0.00 0.00 0.00 4.40
2731 2913 7.175467 ACAGTGAGATTCATCATAAAAAGCACA 59.825 33.333 0.00 0.00 0.00 4.57
2732 2914 8.188799 CAGTGAGATTCATCATAAAAAGCACAT 58.811 33.333 0.00 0.00 0.00 3.21
2733 2915 8.746530 AGTGAGATTCATCATAAAAAGCACATT 58.253 29.630 0.00 0.00 0.00 2.71
2749 2931 9.985730 AAAAGCACATTAGAAAAATGATTCTGA 57.014 25.926 4.82 0.00 39.87 3.27
2750 2932 9.985730 AAAGCACATTAGAAAAATGATTCTGAA 57.014 25.926 4.82 0.00 39.87 3.02
2751 2933 9.985730 AAGCACATTAGAAAAATGATTCTGAAA 57.014 25.926 4.82 0.00 39.87 2.69
2752 2934 9.635520 AGCACATTAGAAAAATGATTCTGAAAG 57.364 29.630 4.82 0.00 39.87 2.62
2753 2935 9.630098 GCACATTAGAAAAATGATTCTGAAAGA 57.370 29.630 4.82 0.00 44.68 2.52
2771 2953 8.138074 TCTGAAAGAACTCTATATCATCCAACG 58.862 37.037 0.00 0.00 42.31 4.10
2772 2954 8.007405 TGAAAGAACTCTATATCATCCAACGA 57.993 34.615 0.00 0.00 0.00 3.85
2773 2955 8.474831 TGAAAGAACTCTATATCATCCAACGAA 58.525 33.333 0.00 0.00 0.00 3.85
2774 2956 9.482627 GAAAGAACTCTATATCATCCAACGAAT 57.517 33.333 0.00 0.00 0.00 3.34
2775 2957 9.838339 AAAGAACTCTATATCATCCAACGAATT 57.162 29.630 0.00 0.00 0.00 2.17
2776 2958 9.838339 AAGAACTCTATATCATCCAACGAATTT 57.162 29.630 0.00 0.00 0.00 1.82
2777 2959 9.482627 AGAACTCTATATCATCCAACGAATTTC 57.517 33.333 0.00 0.00 0.00 2.17
2778 2960 7.875316 ACTCTATATCATCCAACGAATTTCG 57.125 36.000 16.84 16.84 46.93 3.46
2815 2997 9.615295 TTCTTACTGAACTTAACAAACAACAAC 57.385 29.630 0.00 0.00 0.00 3.32
2816 2998 9.005777 TCTTACTGAACTTAACAAACAACAACT 57.994 29.630 0.00 0.00 0.00 3.16
2817 2999 9.620660 CTTACTGAACTTAACAAACAACAACTT 57.379 29.630 0.00 0.00 0.00 2.66
2819 3001 8.959734 ACTGAACTTAACAAACAACAACTTAC 57.040 30.769 0.00 0.00 0.00 2.34
2820 3002 8.569641 ACTGAACTTAACAAACAACAACTTACA 58.430 29.630 0.00 0.00 0.00 2.41
2821 3003 9.400638 CTGAACTTAACAAACAACAACTTACAA 57.599 29.630 0.00 0.00 0.00 2.41
2822 3004 9.745880 TGAACTTAACAAACAACAACTTACAAA 57.254 25.926 0.00 0.00 0.00 2.83
2828 3010 7.414814 ACAAACAACAACTTACAAAAAGTGG 57.585 32.000 0.00 0.00 0.00 4.00
2829 3011 6.425417 ACAAACAACAACTTACAAAAAGTGGG 59.575 34.615 0.00 0.00 0.00 4.61
2830 3012 4.500127 ACAACAACTTACAAAAAGTGGGC 58.500 39.130 0.00 0.00 0.00 5.36
2831 3013 4.021016 ACAACAACTTACAAAAAGTGGGCA 60.021 37.500 0.00 0.00 0.00 5.36
2832 3014 4.385358 ACAACTTACAAAAAGTGGGCAG 57.615 40.909 0.00 0.00 0.00 4.85
2833 3015 3.767131 ACAACTTACAAAAAGTGGGCAGT 59.233 39.130 0.00 0.00 0.00 4.40
2834 3016 4.111916 CAACTTACAAAAAGTGGGCAGTG 58.888 43.478 0.00 0.00 0.00 3.66
2835 3017 3.626930 ACTTACAAAAAGTGGGCAGTGA 58.373 40.909 0.00 0.00 0.00 3.41
2836 3018 4.020543 ACTTACAAAAAGTGGGCAGTGAA 58.979 39.130 0.00 0.00 0.00 3.18
2837 3019 4.464597 ACTTACAAAAAGTGGGCAGTGAAA 59.535 37.500 0.00 0.00 0.00 2.69
2838 3020 3.971245 ACAAAAAGTGGGCAGTGAAAA 57.029 38.095 0.00 0.00 0.00 2.29
2839 3021 3.860641 ACAAAAAGTGGGCAGTGAAAAG 58.139 40.909 0.00 0.00 0.00 2.27
2840 3022 3.197265 CAAAAAGTGGGCAGTGAAAAGG 58.803 45.455 0.00 0.00 0.00 3.11
2841 3023 1.413118 AAAGTGGGCAGTGAAAAGGG 58.587 50.000 0.00 0.00 0.00 3.95
2842 3024 0.261696 AAGTGGGCAGTGAAAAGGGT 59.738 50.000 0.00 0.00 0.00 4.34
2843 3025 0.261696 AGTGGGCAGTGAAAAGGGTT 59.738 50.000 0.00 0.00 0.00 4.11
2844 3026 0.389025 GTGGGCAGTGAAAAGGGTTG 59.611 55.000 0.00 0.00 0.00 3.77
2845 3027 0.032615 TGGGCAGTGAAAAGGGTTGT 60.033 50.000 0.00 0.00 0.00 3.32
2846 3028 1.215673 TGGGCAGTGAAAAGGGTTGTA 59.784 47.619 0.00 0.00 0.00 2.41
2847 3029 2.312390 GGGCAGTGAAAAGGGTTGTAA 58.688 47.619 0.00 0.00 0.00 2.41
2848 3030 2.696187 GGGCAGTGAAAAGGGTTGTAAA 59.304 45.455 0.00 0.00 0.00 2.01
2892 3074 7.642094 TTACAACTATCCTATAATTGGCCCT 57.358 36.000 0.00 0.00 0.00 5.19
2893 3075 8.745149 TTACAACTATCCTATAATTGGCCCTA 57.255 34.615 0.00 0.00 0.00 3.53
2894 3076 7.830848 ACAACTATCCTATAATTGGCCCTAT 57.169 36.000 0.00 0.00 0.00 2.57
2895 3077 8.232098 ACAACTATCCTATAATTGGCCCTATT 57.768 34.615 0.00 2.49 0.00 1.73
2896 3078 9.346515 ACAACTATCCTATAATTGGCCCTATTA 57.653 33.333 0.00 5.00 0.00 0.98
2897 3079 9.614792 CAACTATCCTATAATTGGCCCTATTAC 57.385 37.037 0.00 0.00 0.00 1.89
2898 3080 8.333226 ACTATCCTATAATTGGCCCTATTACC 57.667 38.462 0.00 0.00 0.00 2.85
2899 3081 6.592207 ATCCTATAATTGGCCCTATTACCC 57.408 41.667 0.00 0.00 0.00 3.69
2900 3082 5.682436 TCCTATAATTGGCCCTATTACCCT 58.318 41.667 0.00 0.00 0.00 4.34
2901 3083 5.729718 TCCTATAATTGGCCCTATTACCCTC 59.270 44.000 0.00 0.00 0.00 4.30
2902 3084 4.948062 ATAATTGGCCCTATTACCCTCC 57.052 45.455 0.00 0.00 0.00 4.30
2903 3085 1.456919 ATTGGCCCTATTACCCTCCC 58.543 55.000 0.00 0.00 0.00 4.30
2904 3086 0.349091 TTGGCCCTATTACCCTCCCT 59.651 55.000 0.00 0.00 0.00 4.20
2905 3087 0.104620 TGGCCCTATTACCCTCCCTC 60.105 60.000 0.00 0.00 0.00 4.30
2906 3088 0.193827 GGCCCTATTACCCTCCCTCT 59.806 60.000 0.00 0.00 0.00 3.69
2907 3089 1.435959 GGCCCTATTACCCTCCCTCTA 59.564 57.143 0.00 0.00 0.00 2.43
2908 3090 2.538222 GCCCTATTACCCTCCCTCTAC 58.462 57.143 0.00 0.00 0.00 2.59
2909 3091 2.158204 GCCCTATTACCCTCCCTCTACA 60.158 54.545 0.00 0.00 0.00 2.74
2910 3092 3.504343 GCCCTATTACCCTCCCTCTACAT 60.504 52.174 0.00 0.00 0.00 2.29
2911 3093 4.097418 CCCTATTACCCTCCCTCTACATG 58.903 52.174 0.00 0.00 0.00 3.21
2912 3094 4.450861 CCCTATTACCCTCCCTCTACATGT 60.451 50.000 2.69 2.69 0.00 3.21
2913 3095 4.773149 CCTATTACCCTCCCTCTACATGTC 59.227 50.000 0.00 0.00 0.00 3.06
2914 3096 2.769602 TACCCTCCCTCTACATGTCC 57.230 55.000 0.00 0.00 0.00 4.02
2915 3097 1.019650 ACCCTCCCTCTACATGTCCT 58.980 55.000 0.00 0.00 0.00 3.85
2916 3098 2.224077 ACCCTCCCTCTACATGTCCTA 58.776 52.381 0.00 0.00 0.00 2.94
2917 3099 2.091222 ACCCTCCCTCTACATGTCCTAC 60.091 54.545 0.00 0.00 0.00 3.18
2918 3100 2.091278 CCCTCCCTCTACATGTCCTACA 60.091 54.545 0.00 0.00 0.00 2.74
2919 3101 3.630054 CCCTCCCTCTACATGTCCTACAA 60.630 52.174 0.00 0.00 0.00 2.41
2920 3102 4.030913 CCTCCCTCTACATGTCCTACAAA 58.969 47.826 0.00 0.00 0.00 2.83
2921 3103 4.469945 CCTCCCTCTACATGTCCTACAAAA 59.530 45.833 0.00 0.00 0.00 2.44
2922 3104 5.131142 CCTCCCTCTACATGTCCTACAAAAT 59.869 44.000 0.00 0.00 0.00 1.82
2923 3105 6.235231 TCCCTCTACATGTCCTACAAAATC 57.765 41.667 0.00 0.00 0.00 2.17
2924 3106 5.964477 TCCCTCTACATGTCCTACAAAATCT 59.036 40.000 0.00 0.00 0.00 2.40
2925 3107 6.051717 CCCTCTACATGTCCTACAAAATCTG 58.948 44.000 0.00 0.00 0.00 2.90
2926 3108 6.127054 CCCTCTACATGTCCTACAAAATCTGA 60.127 42.308 0.00 0.00 0.00 3.27
2927 3109 7.331026 CCTCTACATGTCCTACAAAATCTGAA 58.669 38.462 0.00 0.00 0.00 3.02
2928 3110 7.824289 CCTCTACATGTCCTACAAAATCTGAAA 59.176 37.037 0.00 0.00 0.00 2.69
2929 3111 8.547967 TCTACATGTCCTACAAAATCTGAAAC 57.452 34.615 0.00 0.00 0.00 2.78
2930 3112 8.154203 TCTACATGTCCTACAAAATCTGAAACA 58.846 33.333 0.00 0.00 0.00 2.83
2931 3113 7.581213 ACATGTCCTACAAAATCTGAAACAA 57.419 32.000 0.00 0.00 0.00 2.83
2932 3114 8.006298 ACATGTCCTACAAAATCTGAAACAAA 57.994 30.769 0.00 0.00 0.00 2.83
2933 3115 8.641541 ACATGTCCTACAAAATCTGAAACAAAT 58.358 29.630 0.00 0.00 0.00 2.32
2939 3121 8.925700 CCTACAAAATCTGAAACAAATAAAGGC 58.074 33.333 0.00 0.00 0.00 4.35
2940 3122 7.406799 ACAAAATCTGAAACAAATAAAGGCG 57.593 32.000 0.00 0.00 0.00 5.52
2941 3123 6.073819 ACAAAATCTGAAACAAATAAAGGCGC 60.074 34.615 0.00 0.00 0.00 6.53
2942 3124 4.782019 ATCTGAAACAAATAAAGGCGCA 57.218 36.364 10.83 0.00 0.00 6.09
2943 3125 4.782019 TCTGAAACAAATAAAGGCGCAT 57.218 36.364 10.83 0.00 0.00 4.73
2944 3126 5.888691 TCTGAAACAAATAAAGGCGCATA 57.111 34.783 10.83 0.00 0.00 3.14
2945 3127 5.879237 TCTGAAACAAATAAAGGCGCATAG 58.121 37.500 10.83 0.00 0.00 2.23
2946 3128 5.645929 TCTGAAACAAATAAAGGCGCATAGA 59.354 36.000 10.83 0.00 0.00 1.98
2947 3129 6.150307 TCTGAAACAAATAAAGGCGCATAGAA 59.850 34.615 10.83 0.00 0.00 2.10
2948 3130 6.090129 TGAAACAAATAAAGGCGCATAGAAC 58.910 36.000 10.83 0.00 0.00 3.01
2949 3131 5.637006 AACAAATAAAGGCGCATAGAACA 57.363 34.783 10.83 0.00 0.00 3.18
2950 3132 5.235305 ACAAATAAAGGCGCATAGAACAG 57.765 39.130 10.83 0.00 0.00 3.16
2951 3133 4.941263 ACAAATAAAGGCGCATAGAACAGA 59.059 37.500 10.83 0.00 0.00 3.41
2952 3134 5.414454 ACAAATAAAGGCGCATAGAACAGAA 59.586 36.000 10.83 0.00 0.00 3.02
2953 3135 6.072175 ACAAATAAAGGCGCATAGAACAGAAA 60.072 34.615 10.83 0.00 0.00 2.52
2954 3136 6.509418 AATAAAGGCGCATAGAACAGAAAA 57.491 33.333 10.83 0.00 0.00 2.29
2955 3137 6.699575 ATAAAGGCGCATAGAACAGAAAAT 57.300 33.333 10.83 0.00 0.00 1.82
2956 3138 4.622701 AAGGCGCATAGAACAGAAAATC 57.377 40.909 10.83 0.00 0.00 2.17
2957 3139 3.609853 AGGCGCATAGAACAGAAAATCA 58.390 40.909 10.83 0.00 0.00 2.57
2958 3140 3.375299 AGGCGCATAGAACAGAAAATCAC 59.625 43.478 10.83 0.00 0.00 3.06
2959 3141 3.126858 GGCGCATAGAACAGAAAATCACA 59.873 43.478 10.83 0.00 0.00 3.58
2960 3142 4.379394 GGCGCATAGAACAGAAAATCACAA 60.379 41.667 10.83 0.00 0.00 3.33
2961 3143 5.153513 GCGCATAGAACAGAAAATCACAAA 58.846 37.500 0.30 0.00 0.00 2.83
2962 3144 5.629020 GCGCATAGAACAGAAAATCACAAAA 59.371 36.000 0.30 0.00 0.00 2.44
2963 3145 6.308766 GCGCATAGAACAGAAAATCACAAAAT 59.691 34.615 0.30 0.00 0.00 1.82
2964 3146 7.660059 CGCATAGAACAGAAAATCACAAAATG 58.340 34.615 0.00 0.00 0.00 2.32
2965 3147 7.538334 CGCATAGAACAGAAAATCACAAAATGA 59.462 33.333 0.00 0.00 43.13 2.57
2966 3148 9.195411 GCATAGAACAGAAAATCACAAAATGAA 57.805 29.630 0.00 0.00 41.93 2.57
2969 3151 8.822652 AGAACAGAAAATCACAAAATGAATCC 57.177 30.769 0.00 0.00 41.93 3.01
2970 3152 8.645110 AGAACAGAAAATCACAAAATGAATCCT 58.355 29.630 0.00 0.00 41.93 3.24
2971 3153 8.822652 AACAGAAAATCACAAAATGAATCCTC 57.177 30.769 0.00 0.00 41.93 3.71
2972 3154 7.086376 ACAGAAAATCACAAAATGAATCCTCG 58.914 34.615 0.00 0.00 41.93 4.63
2973 3155 7.086376 CAGAAAATCACAAAATGAATCCTCGT 58.914 34.615 0.00 0.00 41.93 4.18
2974 3156 7.061441 CAGAAAATCACAAAATGAATCCTCGTG 59.939 37.037 0.00 0.00 41.93 4.35
2975 3157 5.964958 AATCACAAAATGAATCCTCGTGT 57.035 34.783 0.00 0.00 41.93 4.49
2976 3158 7.447374 AAATCACAAAATGAATCCTCGTGTA 57.553 32.000 0.00 0.00 41.93 2.90
2977 3159 7.447374 AATCACAAAATGAATCCTCGTGTAA 57.553 32.000 0.00 0.00 41.93 2.41
2978 3160 7.630242 ATCACAAAATGAATCCTCGTGTAAT 57.370 32.000 0.00 0.00 41.93 1.89
2979 3161 6.841119 TCACAAAATGAATCCTCGTGTAATG 58.159 36.000 0.00 0.00 33.02 1.90
2980 3162 5.512788 CACAAAATGAATCCTCGTGTAATGC 59.487 40.000 0.00 0.00 0.00 3.56
2981 3163 5.415701 ACAAAATGAATCCTCGTGTAATGCT 59.584 36.000 0.00 0.00 0.00 3.79
2982 3164 6.071952 ACAAAATGAATCCTCGTGTAATGCTT 60.072 34.615 0.00 0.00 0.00 3.91
2983 3165 7.120579 ACAAAATGAATCCTCGTGTAATGCTTA 59.879 33.333 0.00 0.00 0.00 3.09
2984 3166 7.624360 AAATGAATCCTCGTGTAATGCTTAA 57.376 32.000 0.00 0.00 0.00 1.85
2985 3167 7.624360 AATGAATCCTCGTGTAATGCTTAAA 57.376 32.000 0.00 0.00 0.00 1.52
2986 3168 7.624360 ATGAATCCTCGTGTAATGCTTAAAA 57.376 32.000 0.00 0.00 0.00 1.52
2987 3169 6.837992 TGAATCCTCGTGTAATGCTTAAAAC 58.162 36.000 0.00 0.00 0.00 2.43
2988 3170 6.653320 TGAATCCTCGTGTAATGCTTAAAACT 59.347 34.615 0.00 0.00 0.00 2.66
2989 3171 5.856126 TCCTCGTGTAATGCTTAAAACTG 57.144 39.130 0.00 0.00 0.00 3.16
2990 3172 5.302360 TCCTCGTGTAATGCTTAAAACTGT 58.698 37.500 0.00 0.00 0.00 3.55
2991 3173 5.407387 TCCTCGTGTAATGCTTAAAACTGTC 59.593 40.000 0.00 0.00 0.00 3.51
2992 3174 5.390567 CCTCGTGTAATGCTTAAAACTGTCC 60.391 44.000 0.00 0.00 0.00 4.02
2993 3175 5.302360 TCGTGTAATGCTTAAAACTGTCCT 58.698 37.500 0.00 0.00 0.00 3.85
2994 3176 6.457355 TCGTGTAATGCTTAAAACTGTCCTA 58.543 36.000 0.00 0.00 0.00 2.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 57 6.550854 TGGAAACAAATGTCCAAGAGAAATCT 59.449 34.615 0.00 0.00 41.02 2.40
60 62 8.421249 AATAATGGAAACAAATGTCCAAGAGA 57.579 30.769 0.00 0.00 46.78 3.10
178 182 8.685427 CATGGTGAAGGATATGATACAACAAAA 58.315 33.333 0.00 0.00 0.00 2.44
295 300 7.071196 AGCTGAGATAGTTGTTGGTATATGGAA 59.929 37.037 0.00 0.00 0.00 3.53
341 347 5.049818 GTGTCTTTGGATATGCTCAGTATGC 60.050 44.000 0.00 0.00 34.76 3.14
799 898 0.806868 CGCAAGCACACCAGATTCAT 59.193 50.000 0.00 0.00 0.00 2.57
824 923 7.546667 CACTAAAATCAGGCAAGCAAATAACAT 59.453 33.333 0.00 0.00 0.00 2.71
829 928 5.232463 CACACTAAAATCAGGCAAGCAAAT 58.768 37.500 0.00 0.00 0.00 2.32
1009 1164 5.850557 TTTTCAGCTGGTTCTTCATTCAA 57.149 34.783 15.13 0.00 0.00 2.69
1266 1421 1.614996 CATTACCAACAGTGCCACCA 58.385 50.000 0.00 0.00 0.00 4.17
1315 1470 2.046892 CTCCTTGGGCTGTGACCG 60.047 66.667 0.00 0.00 29.56 4.79
1399 1554 8.530804 TTCATTTTGATTGAAAACCCCATTTT 57.469 26.923 0.00 0.00 43.44 1.82
1952 2110 5.067544 TGTTTGAAGCAAATCAGTGACATGA 59.932 36.000 0.00 0.00 35.74 3.07
2044 2203 2.554032 CTCCAGCGTCCAGAAACAAATT 59.446 45.455 0.00 0.00 0.00 1.82
2338 2519 5.662211 AATGCAAAGTTTGAGCAATTCAC 57.338 34.783 19.82 0.00 42.15 3.18
2347 2528 3.870419 GGCAACTCAAATGCAAAGTTTGA 59.130 39.130 19.82 12.19 45.60 2.69
2468 2650 8.702819 TCTGTCTCATAGAAATCTGACATGATT 58.297 33.333 0.00 0.00 38.19 2.57
2488 2670 7.039011 TGACATAAGGTACAATGAGTTCTGTCT 60.039 37.037 8.56 0.00 0.00 3.41
2534 2716 9.787435 AGTTTTATGTTCTTCCTGTACATAACA 57.213 29.630 0.00 3.46 43.58 2.41
2546 2728 6.560253 TGCTCAGGAAGTTTTATGTTCTTC 57.440 37.500 0.00 0.00 37.44 2.87
2547 2729 6.491403 ACATGCTCAGGAAGTTTTATGTTCTT 59.509 34.615 0.00 0.00 0.00 2.52
2548 2730 6.006449 ACATGCTCAGGAAGTTTTATGTTCT 58.994 36.000 0.00 0.00 0.00 3.01
2549 2731 6.088824 CACATGCTCAGGAAGTTTTATGTTC 58.911 40.000 0.00 0.00 0.00 3.18
2550 2732 5.565439 GCACATGCTCAGGAAGTTTTATGTT 60.565 40.000 0.00 0.00 38.21 2.71
2551 2733 4.082571 GCACATGCTCAGGAAGTTTTATGT 60.083 41.667 0.00 0.00 38.21 2.29
2552 2734 4.082625 TGCACATGCTCAGGAAGTTTTATG 60.083 41.667 5.31 0.00 42.66 1.90
2553 2735 4.081406 TGCACATGCTCAGGAAGTTTTAT 58.919 39.130 5.31 0.00 42.66 1.40
2554 2736 3.253188 GTGCACATGCTCAGGAAGTTTTA 59.747 43.478 13.17 0.00 42.66 1.52
2555 2737 2.035066 GTGCACATGCTCAGGAAGTTTT 59.965 45.455 13.17 0.00 42.66 2.43
2556 2738 1.610522 GTGCACATGCTCAGGAAGTTT 59.389 47.619 13.17 0.00 42.66 2.66
2557 2739 1.242076 GTGCACATGCTCAGGAAGTT 58.758 50.000 13.17 0.00 42.66 2.66
2558 2740 0.109153 TGTGCACATGCTCAGGAAGT 59.891 50.000 17.42 0.00 39.29 3.01
2559 2741 0.520404 GTGTGCACATGCTCAGGAAG 59.480 55.000 24.69 0.00 43.92 3.46
2560 2742 0.890542 GGTGTGCACATGCTCAGGAA 60.891 55.000 24.69 0.00 43.92 3.36
2561 2743 1.302752 GGTGTGCACATGCTCAGGA 60.303 57.895 24.69 0.00 43.92 3.86
2562 2744 1.303074 AGGTGTGCACATGCTCAGG 60.303 57.895 24.69 0.00 43.92 3.86
2563 2745 0.887836 ACAGGTGTGCACATGCTCAG 60.888 55.000 24.69 12.26 45.96 3.35
2564 2746 1.148949 ACAGGTGTGCACATGCTCA 59.851 52.632 24.69 4.92 45.96 4.26
2565 2747 1.577922 CACAGGTGTGCACATGCTC 59.422 57.895 24.69 9.89 45.96 4.26
2566 2748 3.754068 CACAGGTGTGCACATGCT 58.246 55.556 24.69 6.29 45.96 3.79
2583 2765 2.372264 TGGGAATGAAGAGCATCAAGC 58.628 47.619 0.00 0.00 46.19 4.01
2584 2766 4.204799 TCATGGGAATGAAGAGCATCAAG 58.795 43.478 0.00 0.00 37.82 3.02
2585 2767 4.080186 TCTCATGGGAATGAAGAGCATCAA 60.080 41.667 0.00 0.00 37.82 2.57
2586 2768 3.457012 TCTCATGGGAATGAAGAGCATCA 59.543 43.478 0.00 0.00 37.82 3.07
2587 2769 4.082665 TCTCATGGGAATGAAGAGCATC 57.917 45.455 0.00 0.00 35.78 3.91
2588 2770 4.399219 CATCTCATGGGAATGAAGAGCAT 58.601 43.478 0.00 0.00 39.43 3.79
2589 2771 3.816994 CATCTCATGGGAATGAAGAGCA 58.183 45.455 0.00 0.00 0.00 4.26
2590 2772 2.553172 GCATCTCATGGGAATGAAGAGC 59.447 50.000 0.00 0.00 0.00 4.09
2591 2773 3.816994 TGCATCTCATGGGAATGAAGAG 58.183 45.455 0.00 0.00 0.00 2.85
2592 2774 3.937778 TGCATCTCATGGGAATGAAGA 57.062 42.857 0.00 0.00 0.00 2.87
2593 2775 3.318275 CCTTGCATCTCATGGGAATGAAG 59.682 47.826 0.00 1.62 36.60 3.02
2594 2776 3.293337 CCTTGCATCTCATGGGAATGAA 58.707 45.455 0.00 0.00 36.60 2.57
2595 2777 2.242965 ACCTTGCATCTCATGGGAATGA 59.757 45.455 0.00 0.00 42.58 2.57
2596 2778 2.621998 GACCTTGCATCTCATGGGAATG 59.378 50.000 0.00 0.00 42.58 2.67
2597 2779 2.747467 CGACCTTGCATCTCATGGGAAT 60.747 50.000 0.00 0.00 42.58 3.01
2598 2780 1.407299 CGACCTTGCATCTCATGGGAA 60.407 52.381 0.00 0.00 42.58 3.97
2599 2781 0.178767 CGACCTTGCATCTCATGGGA 59.821 55.000 0.00 0.00 42.58 4.37
2600 2782 0.107508 ACGACCTTGCATCTCATGGG 60.108 55.000 0.00 0.00 42.58 4.00
2601 2783 1.293924 GACGACCTTGCATCTCATGG 58.706 55.000 0.00 0.00 43.57 3.66
2602 2784 2.014335 TGACGACCTTGCATCTCATG 57.986 50.000 0.00 0.00 0.00 3.07
2603 2785 2.169144 TCATGACGACCTTGCATCTCAT 59.831 45.455 0.00 0.00 0.00 2.90
2604 2786 1.550072 TCATGACGACCTTGCATCTCA 59.450 47.619 0.00 0.00 0.00 3.27
2605 2787 1.929836 GTCATGACGACCTTGCATCTC 59.070 52.381 10.69 0.00 38.85 2.75
2606 2788 1.552337 AGTCATGACGACCTTGCATCT 59.448 47.619 19.85 0.00 46.69 2.90
2607 2789 2.015736 AGTCATGACGACCTTGCATC 57.984 50.000 19.85 0.00 46.69 3.91
2608 2790 2.079158 CAAGTCATGACGACCTTGCAT 58.921 47.619 19.85 0.00 46.69 3.96
2609 2791 1.069978 TCAAGTCATGACGACCTTGCA 59.930 47.619 19.85 6.84 46.69 4.08
2610 2792 1.795768 TCAAGTCATGACGACCTTGC 58.204 50.000 19.85 0.00 46.69 4.01
2611 2793 2.932614 GGATCAAGTCATGACGACCTTG 59.067 50.000 19.85 17.53 46.69 3.61
2612 2794 2.567169 TGGATCAAGTCATGACGACCTT 59.433 45.455 19.85 6.23 46.69 3.50
2613 2795 2.167281 CTGGATCAAGTCATGACGACCT 59.833 50.000 19.85 6.94 46.69 3.85
2614 2796 2.544685 CTGGATCAAGTCATGACGACC 58.455 52.381 19.85 17.88 46.69 4.79
2615 2797 1.929836 GCTGGATCAAGTCATGACGAC 59.070 52.381 19.85 10.37 41.93 4.34
2616 2798 1.550072 TGCTGGATCAAGTCATGACGA 59.450 47.619 19.85 12.56 41.93 4.20
2617 2799 1.931841 CTGCTGGATCAAGTCATGACG 59.068 52.381 19.85 7.28 41.93 4.35
2618 2800 2.286872 CCTGCTGGATCAAGTCATGAC 58.713 52.381 18.47 18.47 41.93 3.06
2619 2801 1.911357 ACCTGCTGGATCAAGTCATGA 59.089 47.619 17.64 0.00 38.55 3.07
2620 2802 2.286872 GACCTGCTGGATCAAGTCATG 58.713 52.381 17.64 0.00 37.04 3.07
2621 2803 1.211457 GGACCTGCTGGATCAAGTCAT 59.789 52.381 17.64 0.00 37.04 3.06
2622 2804 0.615331 GGACCTGCTGGATCAAGTCA 59.385 55.000 17.64 0.00 37.04 3.41
2623 2805 0.615331 TGGACCTGCTGGATCAAGTC 59.385 55.000 17.64 1.80 37.04 3.01
2624 2806 1.211457 GATGGACCTGCTGGATCAAGT 59.789 52.381 17.64 0.31 37.04 3.16
2625 2807 1.476471 GGATGGACCTGCTGGATCAAG 60.476 57.143 17.64 0.00 37.04 3.02
2626 2808 0.548031 GGATGGACCTGCTGGATCAA 59.452 55.000 17.64 4.32 37.04 2.57
2627 2809 2.224821 GGATGGACCTGCTGGATCA 58.775 57.895 17.64 13.45 37.04 2.92
2637 2819 6.049790 GTCATAAGTCTAAACAGGATGGACC 58.950 44.000 0.00 0.00 43.62 4.46
2638 2820 6.879400 AGTCATAAGTCTAAACAGGATGGAC 58.121 40.000 0.00 0.00 43.62 4.02
2639 2821 7.038302 ACAAGTCATAAGTCTAAACAGGATGGA 60.038 37.037 0.00 0.00 43.62 3.41
2640 2822 7.106239 ACAAGTCATAAGTCTAAACAGGATGG 58.894 38.462 0.00 0.00 43.62 3.51
2641 2823 7.278868 GGACAAGTCATAAGTCTAAACAGGATG 59.721 40.741 2.29 0.00 35.74 3.51
2642 2824 7.331791 GGACAAGTCATAAGTCTAAACAGGAT 58.668 38.462 2.29 0.00 32.98 3.24
2643 2825 6.295688 GGGACAAGTCATAAGTCTAAACAGGA 60.296 42.308 2.29 0.00 32.98 3.86
2644 2826 5.875359 GGGACAAGTCATAAGTCTAAACAGG 59.125 44.000 2.29 0.00 32.98 4.00
2645 2827 6.464222 TGGGACAAGTCATAAGTCTAAACAG 58.536 40.000 2.29 0.00 31.92 3.16
2646 2828 6.428083 TGGGACAAGTCATAAGTCTAAACA 57.572 37.500 2.29 0.00 31.92 2.83
2647 2829 5.351740 GCTGGGACAAGTCATAAGTCTAAAC 59.648 44.000 2.29 0.00 38.70 2.01
2648 2830 5.488341 GCTGGGACAAGTCATAAGTCTAAA 58.512 41.667 2.29 0.00 38.70 1.85
2649 2831 4.081087 GGCTGGGACAAGTCATAAGTCTAA 60.081 45.833 2.29 0.00 38.70 2.10
2650 2832 3.451178 GGCTGGGACAAGTCATAAGTCTA 59.549 47.826 2.29 0.00 38.70 2.59
2651 2833 2.237392 GGCTGGGACAAGTCATAAGTCT 59.763 50.000 2.29 0.00 38.70 3.24
2652 2834 2.027192 TGGCTGGGACAAGTCATAAGTC 60.027 50.000 2.29 0.00 38.70 3.01
2653 2835 1.985159 TGGCTGGGACAAGTCATAAGT 59.015 47.619 2.29 0.00 38.70 2.24
2654 2836 2.787473 TGGCTGGGACAAGTCATAAG 57.213 50.000 2.29 0.00 38.70 1.73
2655 2837 2.846206 AGATGGCTGGGACAAGTCATAA 59.154 45.455 2.29 0.00 38.70 1.90
2656 2838 2.481441 AGATGGCTGGGACAAGTCATA 58.519 47.619 2.29 0.00 38.70 2.15
2657 2839 1.293062 AGATGGCTGGGACAAGTCAT 58.707 50.000 2.29 0.00 38.70 3.06
2658 2840 1.951209 TAGATGGCTGGGACAAGTCA 58.049 50.000 2.29 0.00 38.70 3.41
2659 2841 3.567478 AATAGATGGCTGGGACAAGTC 57.433 47.619 0.00 0.00 38.70 3.01
2660 2842 4.018050 AGAAAATAGATGGCTGGGACAAGT 60.018 41.667 0.00 0.00 38.70 3.16
2661 2843 4.337555 CAGAAAATAGATGGCTGGGACAAG 59.662 45.833 0.00 0.00 38.70 3.16
2662 2844 4.272489 CAGAAAATAGATGGCTGGGACAA 58.728 43.478 0.00 0.00 38.70 3.18
2663 2845 3.889815 CAGAAAATAGATGGCTGGGACA 58.110 45.455 0.00 0.00 0.00 4.02
2664 2846 2.620585 GCAGAAAATAGATGGCTGGGAC 59.379 50.000 0.00 0.00 0.00 4.46
2665 2847 2.511218 AGCAGAAAATAGATGGCTGGGA 59.489 45.455 0.00 0.00 0.00 4.37
2666 2848 2.621998 CAGCAGAAAATAGATGGCTGGG 59.378 50.000 0.00 0.00 43.62 4.45
2667 2849 2.034305 GCAGCAGAAAATAGATGGCTGG 59.966 50.000 12.65 0.00 46.47 4.85
2669 2851 3.008835 TGCAGCAGAAAATAGATGGCT 57.991 42.857 0.00 0.00 0.00 4.75
2670 2852 5.640189 ATATGCAGCAGAAAATAGATGGC 57.360 39.130 0.00 0.00 0.00 4.40
2671 2853 9.970395 TTTAAATATGCAGCAGAAAATAGATGG 57.030 29.630 0.00 0.00 0.00 3.51
2677 2859 9.709495 TTGTCTTTTAAATATGCAGCAGAAAAT 57.291 25.926 0.00 0.00 0.00 1.82
2678 2860 9.539825 TTTGTCTTTTAAATATGCAGCAGAAAA 57.460 25.926 0.00 2.07 0.00 2.29
2679 2861 9.539825 TTTTGTCTTTTAAATATGCAGCAGAAA 57.460 25.926 0.00 0.00 0.00 2.52
2680 2862 8.977505 GTTTTGTCTTTTAAATATGCAGCAGAA 58.022 29.630 0.00 0.00 0.00 3.02
2681 2863 8.140628 TGTTTTGTCTTTTAAATATGCAGCAGA 58.859 29.630 0.00 0.00 0.00 4.26
2682 2864 8.296799 TGTTTTGTCTTTTAAATATGCAGCAG 57.703 30.769 0.00 0.00 0.00 4.24
2683 2865 7.925483 ACTGTTTTGTCTTTTAAATATGCAGCA 59.075 29.630 0.00 0.00 0.00 4.41
2684 2866 8.216453 CACTGTTTTGTCTTTTAAATATGCAGC 58.784 33.333 0.00 0.00 0.00 5.25
2685 2867 9.462174 TCACTGTTTTGTCTTTTAAATATGCAG 57.538 29.630 0.00 0.00 0.00 4.41
2686 2868 9.462174 CTCACTGTTTTGTCTTTTAAATATGCA 57.538 29.630 0.00 0.00 0.00 3.96
2687 2869 9.677567 TCTCACTGTTTTGTCTTTTAAATATGC 57.322 29.630 0.00 0.00 0.00 3.14
2693 2875 9.950680 GATGAATCTCACTGTTTTGTCTTTTAA 57.049 29.630 0.00 0.00 0.00 1.52
2694 2876 9.119418 TGATGAATCTCACTGTTTTGTCTTTTA 57.881 29.630 0.00 0.00 0.00 1.52
2695 2877 7.999679 TGATGAATCTCACTGTTTTGTCTTTT 58.000 30.769 0.00 0.00 0.00 2.27
2696 2878 7.572523 TGATGAATCTCACTGTTTTGTCTTT 57.427 32.000 0.00 0.00 0.00 2.52
2697 2879 7.756395 ATGATGAATCTCACTGTTTTGTCTT 57.244 32.000 0.00 0.00 0.00 3.01
2698 2880 8.853077 TTATGATGAATCTCACTGTTTTGTCT 57.147 30.769 0.00 0.00 0.00 3.41
2699 2881 9.897744 TTTTATGATGAATCTCACTGTTTTGTC 57.102 29.630 0.00 0.00 0.00 3.18
2702 2884 9.415544 GCTTTTTATGATGAATCTCACTGTTTT 57.584 29.630 0.00 0.00 0.00 2.43
2703 2885 8.579006 TGCTTTTTATGATGAATCTCACTGTTT 58.421 29.630 0.00 0.00 0.00 2.83
2704 2886 8.025445 GTGCTTTTTATGATGAATCTCACTGTT 58.975 33.333 0.00 0.00 0.00 3.16
2705 2887 7.175467 TGTGCTTTTTATGATGAATCTCACTGT 59.825 33.333 0.00 0.00 0.00 3.55
2706 2888 7.532571 TGTGCTTTTTATGATGAATCTCACTG 58.467 34.615 0.00 0.00 0.00 3.66
2707 2889 7.692460 TGTGCTTTTTATGATGAATCTCACT 57.308 32.000 0.00 0.00 0.00 3.41
2708 2890 8.922058 AATGTGCTTTTTATGATGAATCTCAC 57.078 30.769 0.00 0.00 0.00 3.51
2723 2905 9.985730 TCAGAATCATTTTTCTAATGTGCTTTT 57.014 25.926 0.00 0.00 34.21 2.27
2724 2906 9.985730 TTCAGAATCATTTTTCTAATGTGCTTT 57.014 25.926 0.00 0.00 34.21 3.51
2725 2907 9.985730 TTTCAGAATCATTTTTCTAATGTGCTT 57.014 25.926 0.00 0.00 34.21 3.91
2726 2908 9.635520 CTTTCAGAATCATTTTTCTAATGTGCT 57.364 29.630 0.00 0.00 34.21 4.40
2727 2909 9.630098 TCTTTCAGAATCATTTTTCTAATGTGC 57.370 29.630 0.00 0.00 34.21 4.57
2744 2926 9.823647 GTTGGATGATATAGAGTTCTTTCAGAA 57.176 33.333 0.00 0.00 0.00 3.02
2745 2927 8.138074 CGTTGGATGATATAGAGTTCTTTCAGA 58.862 37.037 0.00 0.00 0.00 3.27
2746 2928 8.138074 TCGTTGGATGATATAGAGTTCTTTCAG 58.862 37.037 0.00 0.00 0.00 3.02
2747 2929 8.007405 TCGTTGGATGATATAGAGTTCTTTCA 57.993 34.615 0.00 0.00 0.00 2.69
2748 2930 8.873215 TTCGTTGGATGATATAGAGTTCTTTC 57.127 34.615 0.00 0.00 0.00 2.62
2749 2931 9.838339 AATTCGTTGGATGATATAGAGTTCTTT 57.162 29.630 0.00 0.00 0.00 2.52
2750 2932 9.838339 AAATTCGTTGGATGATATAGAGTTCTT 57.162 29.630 0.00 0.00 0.00 2.52
2751 2933 9.482627 GAAATTCGTTGGATGATATAGAGTTCT 57.517 33.333 0.00 0.00 0.00 3.01
2752 2934 8.428536 CGAAATTCGTTGGATGATATAGAGTTC 58.571 37.037 7.29 0.00 34.72 3.01
2753 2935 8.299262 CGAAATTCGTTGGATGATATAGAGTT 57.701 34.615 7.29 0.00 34.72 3.01
2754 2936 7.875316 CGAAATTCGTTGGATGATATAGAGT 57.125 36.000 7.29 0.00 34.72 3.24
2789 2971 9.615295 GTTGTTGTTTGTTAAGTTCAGTAAGAA 57.385 29.630 0.00 0.00 0.00 2.52
2790 2972 9.005777 AGTTGTTGTTTGTTAAGTTCAGTAAGA 57.994 29.630 0.00 0.00 0.00 2.10
2791 2973 9.620660 AAGTTGTTGTTTGTTAAGTTCAGTAAG 57.379 29.630 0.00 0.00 0.00 2.34
2794 2976 8.569641 TGTAAGTTGTTGTTTGTTAAGTTCAGT 58.430 29.630 0.00 0.00 0.00 3.41
2795 2977 8.958175 TGTAAGTTGTTGTTTGTTAAGTTCAG 57.042 30.769 0.00 0.00 0.00 3.02
2796 2978 9.745880 TTTGTAAGTTGTTGTTTGTTAAGTTCA 57.254 25.926 0.00 0.00 0.00 3.18
2802 2984 8.979574 CCACTTTTTGTAAGTTGTTGTTTGTTA 58.020 29.630 0.00 0.00 0.00 2.41
2803 2985 7.041712 CCCACTTTTTGTAAGTTGTTGTTTGTT 60.042 33.333 0.00 0.00 0.00 2.83
2804 2986 6.425417 CCCACTTTTTGTAAGTTGTTGTTTGT 59.575 34.615 0.00 0.00 0.00 2.83
2805 2987 6.619660 GCCCACTTTTTGTAAGTTGTTGTTTG 60.620 38.462 0.00 0.00 0.00 2.93
2806 2988 5.410132 GCCCACTTTTTGTAAGTTGTTGTTT 59.590 36.000 0.00 0.00 0.00 2.83
2807 2989 4.932799 GCCCACTTTTTGTAAGTTGTTGTT 59.067 37.500 0.00 0.00 0.00 2.83
2808 2990 4.021016 TGCCCACTTTTTGTAAGTTGTTGT 60.021 37.500 0.00 0.00 0.00 3.32
2809 2991 4.499183 TGCCCACTTTTTGTAAGTTGTTG 58.501 39.130 0.00 0.00 0.00 3.33
2810 2992 4.221924 ACTGCCCACTTTTTGTAAGTTGTT 59.778 37.500 0.00 0.00 0.00 2.83
2811 2993 3.767131 ACTGCCCACTTTTTGTAAGTTGT 59.233 39.130 0.00 0.00 0.00 3.32
2812 2994 4.111916 CACTGCCCACTTTTTGTAAGTTG 58.888 43.478 0.00 0.00 0.00 3.16
2813 2995 4.020543 TCACTGCCCACTTTTTGTAAGTT 58.979 39.130 0.00 0.00 0.00 2.66
2814 2996 3.626930 TCACTGCCCACTTTTTGTAAGT 58.373 40.909 0.00 0.00 0.00 2.24
2815 2997 4.647424 TTCACTGCCCACTTTTTGTAAG 57.353 40.909 0.00 0.00 0.00 2.34
2816 2998 5.407407 TTTTCACTGCCCACTTTTTGTAA 57.593 34.783 0.00 0.00 0.00 2.41
2817 2999 4.142049 CCTTTTCACTGCCCACTTTTTGTA 60.142 41.667 0.00 0.00 0.00 2.41
2818 3000 3.369366 CCTTTTCACTGCCCACTTTTTGT 60.369 43.478 0.00 0.00 0.00 2.83
2819 3001 3.197265 CCTTTTCACTGCCCACTTTTTG 58.803 45.455 0.00 0.00 0.00 2.44
2820 3002 2.170397 CCCTTTTCACTGCCCACTTTTT 59.830 45.455 0.00 0.00 0.00 1.94
2821 3003 1.762370 CCCTTTTCACTGCCCACTTTT 59.238 47.619 0.00 0.00 0.00 2.27
2822 3004 1.342975 ACCCTTTTCACTGCCCACTTT 60.343 47.619 0.00 0.00 0.00 2.66
2823 3005 0.261696 ACCCTTTTCACTGCCCACTT 59.738 50.000 0.00 0.00 0.00 3.16
2824 3006 0.261696 AACCCTTTTCACTGCCCACT 59.738 50.000 0.00 0.00 0.00 4.00
2825 3007 0.389025 CAACCCTTTTCACTGCCCAC 59.611 55.000 0.00 0.00 0.00 4.61
2826 3008 0.032615 ACAACCCTTTTCACTGCCCA 60.033 50.000 0.00 0.00 0.00 5.36
2827 3009 1.989706 TACAACCCTTTTCACTGCCC 58.010 50.000 0.00 0.00 0.00 5.36
2828 3010 3.383505 AGTTTACAACCCTTTTCACTGCC 59.616 43.478 0.00 0.00 0.00 4.85
2829 3011 4.649088 AGTTTACAACCCTTTTCACTGC 57.351 40.909 0.00 0.00 0.00 4.40
2830 3012 7.228706 ACAGATAGTTTACAACCCTTTTCACTG 59.771 37.037 0.00 0.00 0.00 3.66
2831 3013 7.287810 ACAGATAGTTTACAACCCTTTTCACT 58.712 34.615 0.00 0.00 0.00 3.41
2832 3014 7.506328 ACAGATAGTTTACAACCCTTTTCAC 57.494 36.000 0.00 0.00 0.00 3.18
2866 3048 9.346515 AGGGCCAATTATAGGATAGTTGTAATA 57.653 33.333 6.18 0.00 0.00 0.98
2867 3049 8.232098 AGGGCCAATTATAGGATAGTTGTAAT 57.768 34.615 6.18 0.00 0.00 1.89
2868 3050 7.642094 AGGGCCAATTATAGGATAGTTGTAA 57.358 36.000 6.18 0.00 0.00 2.41
2869 3051 8.927059 ATAGGGCCAATTATAGGATAGTTGTA 57.073 34.615 6.18 0.00 0.00 2.41
2870 3052 7.830848 ATAGGGCCAATTATAGGATAGTTGT 57.169 36.000 6.18 0.00 0.00 3.32
2871 3053 9.614792 GTAATAGGGCCAATTATAGGATAGTTG 57.385 37.037 6.18 0.00 0.00 3.16
2872 3054 8.779031 GGTAATAGGGCCAATTATAGGATAGTT 58.221 37.037 6.18 0.00 0.00 2.24
2873 3055 7.350124 GGGTAATAGGGCCAATTATAGGATAGT 59.650 40.741 6.18 0.00 0.00 2.12
2874 3056 7.572861 AGGGTAATAGGGCCAATTATAGGATAG 59.427 40.741 6.18 0.00 0.00 2.08
2875 3057 7.444356 AGGGTAATAGGGCCAATTATAGGATA 58.556 38.462 6.18 0.00 0.00 2.59
2876 3058 6.288159 AGGGTAATAGGGCCAATTATAGGAT 58.712 40.000 6.18 0.00 0.00 3.24
2877 3059 5.682436 AGGGTAATAGGGCCAATTATAGGA 58.318 41.667 6.18 0.00 0.00 2.94
2878 3060 5.104067 GGAGGGTAATAGGGCCAATTATAGG 60.104 48.000 6.18 0.00 0.00 2.57
2879 3061 5.104067 GGGAGGGTAATAGGGCCAATTATAG 60.104 48.000 6.18 0.00 0.00 1.31
2880 3062 4.791880 GGGAGGGTAATAGGGCCAATTATA 59.208 45.833 6.18 0.00 0.00 0.98
2881 3063 3.596500 GGGAGGGTAATAGGGCCAATTAT 59.403 47.826 6.18 0.00 0.00 1.28
2882 3064 2.990998 GGGAGGGTAATAGGGCCAATTA 59.009 50.000 6.18 5.30 0.00 1.40
2883 3065 1.787058 GGGAGGGTAATAGGGCCAATT 59.213 52.381 6.18 6.43 0.00 2.32
2884 3066 1.059765 AGGGAGGGTAATAGGGCCAAT 60.060 52.381 6.18 0.00 0.00 3.16
2885 3067 0.349091 AGGGAGGGTAATAGGGCCAA 59.651 55.000 6.18 0.00 0.00 4.52
2886 3068 0.104620 GAGGGAGGGTAATAGGGCCA 60.105 60.000 6.18 0.00 0.00 5.36
2887 3069 0.193827 AGAGGGAGGGTAATAGGGCC 59.806 60.000 0.00 0.00 0.00 5.80
2888 3070 2.158204 TGTAGAGGGAGGGTAATAGGGC 60.158 54.545 0.00 0.00 0.00 5.19
2889 3071 3.917324 TGTAGAGGGAGGGTAATAGGG 57.083 52.381 0.00 0.00 0.00 3.53
2890 3072 4.753186 ACATGTAGAGGGAGGGTAATAGG 58.247 47.826 0.00 0.00 0.00 2.57
2891 3073 4.773149 GGACATGTAGAGGGAGGGTAATAG 59.227 50.000 0.00 0.00 0.00 1.73
2892 3074 4.422592 AGGACATGTAGAGGGAGGGTAATA 59.577 45.833 0.00 0.00 0.00 0.98
2893 3075 3.210074 AGGACATGTAGAGGGAGGGTAAT 59.790 47.826 0.00 0.00 0.00 1.89
2894 3076 2.590611 AGGACATGTAGAGGGAGGGTAA 59.409 50.000 0.00 0.00 0.00 2.85
2895 3077 2.224077 AGGACATGTAGAGGGAGGGTA 58.776 52.381 0.00 0.00 0.00 3.69
2896 3078 1.019650 AGGACATGTAGAGGGAGGGT 58.980 55.000 0.00 0.00 0.00 4.34
2897 3079 2.091278 TGTAGGACATGTAGAGGGAGGG 60.091 54.545 0.00 0.00 0.00 4.30
2898 3080 3.314307 TGTAGGACATGTAGAGGGAGG 57.686 52.381 0.00 0.00 0.00 4.30
2899 3081 5.677319 TTTTGTAGGACATGTAGAGGGAG 57.323 43.478 0.00 0.00 0.00 4.30
2900 3082 5.964477 AGATTTTGTAGGACATGTAGAGGGA 59.036 40.000 0.00 0.00 0.00 4.20
2901 3083 6.051717 CAGATTTTGTAGGACATGTAGAGGG 58.948 44.000 0.00 0.00 0.00 4.30
2902 3084 6.878317 TCAGATTTTGTAGGACATGTAGAGG 58.122 40.000 0.00 0.00 0.00 3.69
2903 3085 8.660373 GTTTCAGATTTTGTAGGACATGTAGAG 58.340 37.037 0.00 0.00 0.00 2.43
2904 3086 8.154203 TGTTTCAGATTTTGTAGGACATGTAGA 58.846 33.333 0.00 0.00 0.00 2.59
2905 3087 8.322906 TGTTTCAGATTTTGTAGGACATGTAG 57.677 34.615 0.00 0.00 0.00 2.74
2906 3088 8.684386 TTGTTTCAGATTTTGTAGGACATGTA 57.316 30.769 0.00 0.00 0.00 2.29
2907 3089 7.581213 TTGTTTCAGATTTTGTAGGACATGT 57.419 32.000 0.00 0.00 0.00 3.21
2913 3095 8.925700 GCCTTTATTTGTTTCAGATTTTGTAGG 58.074 33.333 0.00 0.00 0.00 3.18
2914 3096 8.638565 CGCCTTTATTTGTTTCAGATTTTGTAG 58.361 33.333 0.00 0.00 0.00 2.74
2915 3097 7.115663 GCGCCTTTATTTGTTTCAGATTTTGTA 59.884 33.333 0.00 0.00 0.00 2.41
2916 3098 6.073819 GCGCCTTTATTTGTTTCAGATTTTGT 60.074 34.615 0.00 0.00 0.00 2.83
2917 3099 6.073873 TGCGCCTTTATTTGTTTCAGATTTTG 60.074 34.615 4.18 0.00 0.00 2.44
2918 3100 5.988561 TGCGCCTTTATTTGTTTCAGATTTT 59.011 32.000 4.18 0.00 0.00 1.82
2919 3101 5.537188 TGCGCCTTTATTTGTTTCAGATTT 58.463 33.333 4.18 0.00 0.00 2.17
2920 3102 5.132897 TGCGCCTTTATTTGTTTCAGATT 57.867 34.783 4.18 0.00 0.00 2.40
2921 3103 4.782019 TGCGCCTTTATTTGTTTCAGAT 57.218 36.364 4.18 0.00 0.00 2.90
2922 3104 4.782019 ATGCGCCTTTATTTGTTTCAGA 57.218 36.364 4.18 0.00 0.00 3.27
2923 3105 5.879237 TCTATGCGCCTTTATTTGTTTCAG 58.121 37.500 4.18 0.00 0.00 3.02
2924 3106 5.888691 TCTATGCGCCTTTATTTGTTTCA 57.111 34.783 4.18 0.00 0.00 2.69
2925 3107 6.090129 TGTTCTATGCGCCTTTATTTGTTTC 58.910 36.000 4.18 0.00 0.00 2.78
2926 3108 6.019779 TGTTCTATGCGCCTTTATTTGTTT 57.980 33.333 4.18 0.00 0.00 2.83
2927 3109 5.414454 TCTGTTCTATGCGCCTTTATTTGTT 59.586 36.000 4.18 0.00 0.00 2.83
2928 3110 4.941263 TCTGTTCTATGCGCCTTTATTTGT 59.059 37.500 4.18 0.00 0.00 2.83
2929 3111 5.484173 TCTGTTCTATGCGCCTTTATTTG 57.516 39.130 4.18 0.00 0.00 2.32
2930 3112 6.509418 TTTCTGTTCTATGCGCCTTTATTT 57.491 33.333 4.18 0.00 0.00 1.40
2931 3113 6.509418 TTTTCTGTTCTATGCGCCTTTATT 57.491 33.333 4.18 0.00 0.00 1.40
2932 3114 6.318648 TGATTTTCTGTTCTATGCGCCTTTAT 59.681 34.615 4.18 0.00 0.00 1.40
2933 3115 5.645929 TGATTTTCTGTTCTATGCGCCTTTA 59.354 36.000 4.18 0.00 0.00 1.85
2934 3116 4.458989 TGATTTTCTGTTCTATGCGCCTTT 59.541 37.500 4.18 0.00 0.00 3.11
2935 3117 4.009675 TGATTTTCTGTTCTATGCGCCTT 58.990 39.130 4.18 0.00 0.00 4.35
2936 3118 3.375299 GTGATTTTCTGTTCTATGCGCCT 59.625 43.478 4.18 0.00 0.00 5.52
2937 3119 3.126858 TGTGATTTTCTGTTCTATGCGCC 59.873 43.478 4.18 0.00 0.00 6.53
2938 3120 4.340894 TGTGATTTTCTGTTCTATGCGC 57.659 40.909 0.00 0.00 0.00 6.09
2939 3121 7.538334 TCATTTTGTGATTTTCTGTTCTATGCG 59.462 33.333 0.00 0.00 0.00 4.73
2940 3122 8.746922 TCATTTTGTGATTTTCTGTTCTATGC 57.253 30.769 0.00 0.00 0.00 3.14
2943 3125 9.912634 GGATTCATTTTGTGATTTTCTGTTCTA 57.087 29.630 0.00 0.00 36.54 2.10
2944 3126 8.645110 AGGATTCATTTTGTGATTTTCTGTTCT 58.355 29.630 0.00 0.00 36.54 3.01
2945 3127 8.822652 AGGATTCATTTTGTGATTTTCTGTTC 57.177 30.769 0.00 0.00 36.54 3.18
2946 3128 7.596248 CGAGGATTCATTTTGTGATTTTCTGTT 59.404 33.333 0.00 0.00 36.54 3.16
2947 3129 7.086376 CGAGGATTCATTTTGTGATTTTCTGT 58.914 34.615 0.00 0.00 36.54 3.41
2948 3130 7.061441 CACGAGGATTCATTTTGTGATTTTCTG 59.939 37.037 0.00 0.00 36.54 3.02
2949 3131 7.086376 CACGAGGATTCATTTTGTGATTTTCT 58.914 34.615 0.00 0.00 36.54 2.52
2950 3132 6.863126 ACACGAGGATTCATTTTGTGATTTTC 59.137 34.615 0.00 0.00 36.54 2.29
2951 3133 6.748132 ACACGAGGATTCATTTTGTGATTTT 58.252 32.000 0.00 0.00 36.54 1.82
2952 3134 6.331369 ACACGAGGATTCATTTTGTGATTT 57.669 33.333 0.00 0.00 36.54 2.17
2953 3135 5.964958 ACACGAGGATTCATTTTGTGATT 57.035 34.783 0.00 0.00 36.54 2.57
2954 3136 7.475015 CATTACACGAGGATTCATTTTGTGAT 58.525 34.615 0.00 0.00 36.54 3.06
2955 3137 6.622679 GCATTACACGAGGATTCATTTTGTGA 60.623 38.462 0.00 0.00 34.25 3.58
2956 3138 5.512788 GCATTACACGAGGATTCATTTTGTG 59.487 40.000 0.00 0.00 0.00 3.33
2957 3139 5.415701 AGCATTACACGAGGATTCATTTTGT 59.584 36.000 0.00 0.00 0.00 2.83
2958 3140 5.883661 AGCATTACACGAGGATTCATTTTG 58.116 37.500 0.00 0.00 0.00 2.44
2959 3141 6.515272 AAGCATTACACGAGGATTCATTTT 57.485 33.333 0.00 0.00 0.00 1.82
2960 3142 7.624360 TTAAGCATTACACGAGGATTCATTT 57.376 32.000 0.00 0.00 0.00 2.32
2961 3143 7.624360 TTTAAGCATTACACGAGGATTCATT 57.376 32.000 0.00 0.00 0.00 2.57
2962 3144 7.336931 AGTTTTAAGCATTACACGAGGATTCAT 59.663 33.333 0.00 0.00 0.00 2.57
2963 3145 6.653320 AGTTTTAAGCATTACACGAGGATTCA 59.347 34.615 0.00 0.00 0.00 2.57
2964 3146 6.961554 CAGTTTTAAGCATTACACGAGGATTC 59.038 38.462 0.00 0.00 0.00 2.52
2965 3147 6.430000 ACAGTTTTAAGCATTACACGAGGATT 59.570 34.615 0.00 0.00 0.00 3.01
2966 3148 5.938125 ACAGTTTTAAGCATTACACGAGGAT 59.062 36.000 0.00 0.00 0.00 3.24
2967 3149 5.302360 ACAGTTTTAAGCATTACACGAGGA 58.698 37.500 0.00 0.00 0.00 3.71
2968 3150 5.390567 GGACAGTTTTAAGCATTACACGAGG 60.391 44.000 0.00 0.00 0.00 4.63
2969 3151 5.408604 AGGACAGTTTTAAGCATTACACGAG 59.591 40.000 0.00 0.00 0.00 4.18
2970 3152 5.302360 AGGACAGTTTTAAGCATTACACGA 58.698 37.500 0.00 0.00 0.00 4.35
2971 3153 5.607119 AGGACAGTTTTAAGCATTACACG 57.393 39.130 0.00 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.