Multiple sequence alignment - TraesCS7A01G027200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G027200 chr7A 100.000 3818 0 0 1 3818 10908194 10904377 0.000000e+00 7051.0
1 TraesCS7A01G027200 chr7D 91.697 2168 150 16 564 2708 11430809 11428649 0.000000e+00 2979.0
2 TraesCS7A01G027200 chr7D 79.348 460 46 32 3369 3799 11427883 11427444 1.040000e-70 278.0
3 TraesCS7A01G027200 chr7D 100.000 32 0 0 3046 3077 11428272 11428241 4.120000e-05 60.2
4 TraesCS7A01G027200 chr4A 87.148 2560 226 52 1295 3813 726442782 726445279 0.000000e+00 2809.0
5 TraesCS7A01G027200 chr4A 88.314 599 39 15 701 1276 726441839 726442429 0.000000e+00 689.0
6 TraesCS7A01G027200 chr4A 91.795 195 15 1 32 226 726440990 726441183 1.750000e-68 270.0
7 TraesCS7A01G027200 chr4A 83.799 179 16 7 351 523 726441434 726441605 1.420000e-34 158.0
8 TraesCS7A01G027200 chr4A 78.205 156 11 5 552 698 726441602 726441743 1.140000e-10 78.7
9 TraesCS7A01G027200 chr5A 87.987 616 68 3 2082 2694 292253977 292254589 0.000000e+00 723.0
10 TraesCS7A01G027200 chr5A 87.825 616 69 3 2082 2694 472472882 472472270 0.000000e+00 717.0
11 TraesCS7A01G027200 chr1B 73.391 233 46 16 1607 1831 597554516 597554292 5.290000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G027200 chr7A 10904377 10908194 3817 True 7051.000000 7051 100.000000 1 3818 1 chr7A.!!$R1 3817
1 TraesCS7A01G027200 chr7D 11427444 11430809 3365 True 1105.733333 2979 90.348333 564 3799 3 chr7D.!!$R1 3235
2 TraesCS7A01G027200 chr4A 726440990 726445279 4289 False 800.940000 2809 85.852200 32 3813 5 chr4A.!!$F1 3781
3 TraesCS7A01G027200 chr5A 292253977 292254589 612 False 723.000000 723 87.987000 2082 2694 1 chr5A.!!$F1 612
4 TraesCS7A01G027200 chr5A 472472270 472472882 612 True 717.000000 717 87.825000 2082 2694 1 chr5A.!!$R1 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
260 326 0.034337 TGGACGTGACTGTTAAGGGC 59.966 55.0 0.0 0.0 0.0 5.19 F
261 327 0.320697 GGACGTGACTGTTAAGGGCT 59.679 55.0 0.0 0.0 0.0 5.19 F
1935 2537 0.391597 TGCCGAACGAGAAGACCTTT 59.608 50.0 0.0 0.0 0.0 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1935 2537 0.679505 AGGCTGTAAGAACGCTCACA 59.320 50.000 0.00 0.0 34.07 3.58 R
2079 2681 1.300465 CCTCGCGGTCTCCATCATG 60.300 63.158 6.13 0.0 0.00 3.07 R
3486 4318 0.036858 GTCTTCTGCGGCTCCTCTTT 60.037 55.000 0.00 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.228115 AACGTACCCGCACTTTTCG 58.772 52.632 0.00 0.00 37.70 3.46
19 20 0.249405 AACGTACCCGCACTTTTCGA 60.249 50.000 0.00 0.00 37.70 3.71
20 21 0.665369 ACGTACCCGCACTTTTCGAG 60.665 55.000 0.00 0.00 37.70 4.04
21 22 0.387622 CGTACCCGCACTTTTCGAGA 60.388 55.000 0.00 0.00 0.00 4.04
22 23 1.347320 GTACCCGCACTTTTCGAGAG 58.653 55.000 0.00 0.00 0.00 3.20
23 24 0.389426 TACCCGCACTTTTCGAGAGC 60.389 55.000 0.00 0.00 38.44 4.09
24 25 1.374758 CCCGCACTTTTCGAGAGCT 60.375 57.895 0.00 0.00 39.50 4.09
25 26 1.355066 CCCGCACTTTTCGAGAGCTC 61.355 60.000 5.27 5.27 39.50 4.09
79 80 1.517257 GCAGGAGTGATCGTGGACG 60.517 63.158 0.00 0.00 41.45 4.79
94 95 0.466739 GGACGTGTTCCCAAGGGTTT 60.467 55.000 4.80 0.00 38.70 3.27
128 129 2.223537 TACATCTGGTGTATGCGCTG 57.776 50.000 9.73 0.00 42.29 5.18
137 138 1.356624 GTATGCGCTGGATGGTTGC 59.643 57.895 9.73 0.00 0.00 4.17
162 163 1.068748 CACCATCAGTTTCAGCTGCAC 60.069 52.381 9.47 8.35 36.49 4.57
178 179 1.672363 TGCACAGACAGCAAGTTCTTG 59.328 47.619 8.04 8.04 39.39 3.02
242 308 7.212274 GGAAACCTCCATATTTTCCATGAATG 58.788 38.462 9.92 0.00 45.24 2.67
257 323 5.208624 CATGAATGGACGTGACTGTTAAG 57.791 43.478 0.00 0.00 0.00 1.85
258 324 3.659786 TGAATGGACGTGACTGTTAAGG 58.340 45.455 0.00 0.00 0.00 2.69
260 326 0.034337 TGGACGTGACTGTTAAGGGC 59.966 55.000 0.00 0.00 0.00 5.19
261 327 0.320697 GGACGTGACTGTTAAGGGCT 59.679 55.000 0.00 0.00 0.00 5.19
262 328 1.672145 GGACGTGACTGTTAAGGGCTC 60.672 57.143 0.00 0.00 0.00 4.70
263 329 1.272769 GACGTGACTGTTAAGGGCTCT 59.727 52.381 0.00 0.00 0.00 4.09
279 346 4.023291 GGGCTCTTTTGGTTGGAATGATA 58.977 43.478 0.00 0.00 0.00 2.15
288 355 3.053693 TGGTTGGAATGATAAGTGGAGGG 60.054 47.826 0.00 0.00 0.00 4.30
292 359 5.528600 TGGAATGATAAGTGGAGGGAAAA 57.471 39.130 0.00 0.00 0.00 2.29
307 374 7.545615 GTGGAGGGAAAACATTGAATATGAAAC 59.454 37.037 0.00 0.00 0.00 2.78
311 378 9.710900 AGGGAAAACATTGAATATGAAACTTTC 57.289 29.630 0.00 0.00 0.00 2.62
349 416 4.702131 ACTATTCATGCCTTTGGTTCAGAC 59.298 41.667 0.00 0.00 0.00 3.51
391 522 0.949397 GGAGTTTTCGCCTTCGGTTT 59.051 50.000 0.00 0.00 36.82 3.27
392 523 1.334689 GGAGTTTTCGCCTTCGGTTTG 60.335 52.381 0.00 0.00 36.82 2.93
407 538 1.001974 GGTTTGAAGGAATGGGGCAAC 59.998 52.381 0.00 0.00 0.00 4.17
415 546 1.337728 GGAATGGGGCAACGGAAAAAG 60.338 52.381 0.00 0.00 37.60 2.27
421 552 1.487482 GGCAACGGAAAAAGTGAAGC 58.513 50.000 0.00 0.00 0.00 3.86
427 558 4.450082 ACGGAAAAAGTGAAGCAGTTTT 57.550 36.364 7.05 7.05 45.31 2.43
433 564 7.412891 CGGAAAAAGTGAAGCAGTTTTCATTTT 60.413 33.333 11.94 4.16 43.45 1.82
444 575 8.922931 AGCAGTTTTCATTTTATCCCATTTTT 57.077 26.923 0.00 0.00 0.00 1.94
523 660 5.961272 TCTATGCACGATGAACAAGACTAA 58.039 37.500 0.00 0.00 0.00 2.24
524 661 6.573434 TCTATGCACGATGAACAAGACTAAT 58.427 36.000 0.00 0.00 0.00 1.73
525 662 7.712797 TCTATGCACGATGAACAAGACTAATA 58.287 34.615 0.00 0.00 0.00 0.98
526 663 8.360390 TCTATGCACGATGAACAAGACTAATAT 58.640 33.333 0.00 0.00 0.00 1.28
527 664 6.828502 TGCACGATGAACAAGACTAATATC 57.171 37.500 0.00 0.00 0.00 1.63
528 665 5.753438 TGCACGATGAACAAGACTAATATCC 59.247 40.000 0.00 0.00 0.00 2.59
529 666 5.986135 GCACGATGAACAAGACTAATATCCT 59.014 40.000 0.00 0.00 0.00 3.24
530 667 6.480320 GCACGATGAACAAGACTAATATCCTT 59.520 38.462 0.00 0.00 0.00 3.36
531 668 7.652105 GCACGATGAACAAGACTAATATCCTTA 59.348 37.037 0.00 0.00 0.00 2.69
532 669 9.529325 CACGATGAACAAGACTAATATCCTTAA 57.471 33.333 0.00 0.00 0.00 1.85
533 670 9.530633 ACGATGAACAAGACTAATATCCTTAAC 57.469 33.333 0.00 0.00 0.00 2.01
534 671 9.529325 CGATGAACAAGACTAATATCCTTAACA 57.471 33.333 0.00 0.00 0.00 2.41
536 673 8.718102 TGAACAAGACTAATATCCTTAACAGC 57.282 34.615 0.00 0.00 0.00 4.40
537 674 8.318412 TGAACAAGACTAATATCCTTAACAGCA 58.682 33.333 0.00 0.00 0.00 4.41
538 675 9.331282 GAACAAGACTAATATCCTTAACAGCAT 57.669 33.333 0.00 0.00 0.00 3.79
545 682 9.899661 ACTAATATCCTTAACAGCATAACAACA 57.100 29.630 0.00 0.00 0.00 3.33
549 686 7.944729 ATCCTTAACAGCATAACAACATTCT 57.055 32.000 0.00 0.00 0.00 2.40
551 688 8.856153 TCCTTAACAGCATAACAACATTCTAA 57.144 30.769 0.00 0.00 0.00 2.10
552 689 8.726988 TCCTTAACAGCATAACAACATTCTAAC 58.273 33.333 0.00 0.00 0.00 2.34
553 690 8.730680 CCTTAACAGCATAACAACATTCTAACT 58.269 33.333 0.00 0.00 0.00 2.24
649 787 3.233507 ACCAAAGCATCCAAGTTGACAT 58.766 40.909 3.87 0.00 0.00 3.06
678 824 8.604640 TTCTATGTTTACCATGTTTCGTACAA 57.395 30.769 0.00 0.00 40.89 2.41
724 963 5.975693 TTTTAGAATCCTGCAAACCGAAT 57.024 34.783 0.00 0.00 0.00 3.34
731 970 1.228398 TGCAAACCGAATGAGCCCA 60.228 52.632 0.00 0.00 0.00 5.36
852 1102 3.181329 TGGCCTTCTCTTGTATTCCTCA 58.819 45.455 3.32 0.00 0.00 3.86
917 1167 1.673009 CAAAACCCGCCTTCGCCTA 60.673 57.895 0.00 0.00 0.00 3.93
930 1180 1.215117 CGCCTACCGTTCCCGTAAA 59.785 57.895 0.00 0.00 0.00 2.01
933 1183 2.000429 CCTACCGTTCCCGTAAAGTG 58.000 55.000 0.00 0.00 0.00 3.16
934 1184 1.273327 CCTACCGTTCCCGTAAAGTGT 59.727 52.381 0.00 0.00 0.00 3.55
935 1185 2.599659 CTACCGTTCCCGTAAAGTGTC 58.400 52.381 0.00 0.00 0.00 3.67
938 1188 1.528161 CCGTTCCCGTAAAGTGTCAAC 59.472 52.381 0.00 0.00 0.00 3.18
1194 1462 2.507992 CGCCTCCTCAACTCGCTG 60.508 66.667 0.00 0.00 0.00 5.18
1547 2149 3.069318 GCGGGACCTCGTCTCCTT 61.069 66.667 4.61 0.00 32.47 3.36
1570 2172 4.415150 CCATGCTGTCCGGCCACT 62.415 66.667 2.24 0.00 0.00 4.00
1647 2249 0.469331 ACGTGGTCTCCTGGAACTCA 60.469 55.000 0.00 0.00 31.77 3.41
1655 2257 1.004044 CTCCTGGAACTCAATGCTGGT 59.996 52.381 0.00 0.00 32.65 4.00
1758 2360 4.157120 ATGCTGGACGGGTACGCC 62.157 66.667 4.09 0.00 46.04 5.68
1834 2436 2.732016 CCGTGTCCTGGAACGTCA 59.268 61.111 21.33 5.84 38.11 4.35
1935 2537 0.391597 TGCCGAACGAGAAGACCTTT 59.608 50.000 0.00 0.00 0.00 3.11
1947 2549 2.622064 AGACCTTTGTGAGCGTTCTT 57.378 45.000 0.00 0.00 0.00 2.52
2041 2643 2.282958 TCGTGCCGGACTTCCTCT 60.283 61.111 5.05 0.00 0.00 3.69
2116 2718 1.335506 GGGAGATCTTCGACTCGATGC 60.336 57.143 1.07 0.00 35.23 3.91
2136 2738 2.750637 GAGAGGAGCGTCCCGTCA 60.751 66.667 1.06 0.00 37.19 4.35
2373 2975 0.106819 GCTGCATGATGGACCTCCTT 60.107 55.000 0.00 0.00 36.82 3.36
2404 3006 3.368190 CTGCTCACAGGCTCGGAGG 62.368 68.421 7.20 0.00 40.48 4.30
2426 3028 0.318441 CTCGTCCAGAACCTGCAAGA 59.682 55.000 0.00 0.00 34.07 3.02
2427 3029 0.318441 TCGTCCAGAACCTGCAAGAG 59.682 55.000 0.00 0.00 34.07 2.85
2430 3032 2.806745 CGTCCAGAACCTGCAAGAGAAA 60.807 50.000 0.00 0.00 34.07 2.52
2438 3040 0.321122 CTGCAAGAGAAAGCGTCCCT 60.321 55.000 0.00 0.00 34.07 4.20
2449 3051 4.308458 CGTCCCTGGCGTTGTGGA 62.308 66.667 0.00 0.00 0.00 4.02
2463 3065 2.756400 TGGAGCGCCATGGTTTCT 59.244 55.556 14.67 7.91 39.92 2.52
2464 3066 1.074775 TGGAGCGCCATGGTTTCTT 59.925 52.632 14.67 0.00 39.92 2.52
2465 3067 0.960364 TGGAGCGCCATGGTTTCTTC 60.960 55.000 14.67 7.43 39.92 2.87
2466 3068 0.960364 GGAGCGCCATGGTTTCTTCA 60.960 55.000 14.67 0.00 0.00 3.02
2536 3141 0.249238 GCTGATCGAGATGAAGCCGT 60.249 55.000 0.00 0.00 0.00 5.68
2554 3159 3.151710 CGGAGGTCGGCCCATACA 61.152 66.667 0.08 0.00 34.66 2.29
2556 3161 1.837090 GGAGGTCGGCCCATACATT 59.163 57.895 0.08 0.00 34.66 2.71
2577 3182 0.100682 TGCTCTCGAACATCTACGCC 59.899 55.000 0.00 0.00 0.00 5.68
2631 3236 4.347583 GTGAGGGAGATGATGAAGGAGAAT 59.652 45.833 0.00 0.00 0.00 2.40
2634 3239 3.393941 GGGAGATGATGAAGGAGAATGGT 59.606 47.826 0.00 0.00 0.00 3.55
2646 3251 2.172293 GGAGAATGGTGCTGAGAAGGAT 59.828 50.000 0.00 0.00 0.00 3.24
2649 3254 3.009916 AGAATGGTGCTGAGAAGGATGTT 59.990 43.478 0.00 0.00 0.00 2.71
2652 3257 1.271597 GGTGCTGAGAAGGATGTTGGT 60.272 52.381 0.00 0.00 0.00 3.67
2653 3258 2.508526 GTGCTGAGAAGGATGTTGGTT 58.491 47.619 0.00 0.00 0.00 3.67
2684 3292 0.755686 GGATCCAGCGAACCAGAGAT 59.244 55.000 6.95 0.00 31.28 2.75
2697 3305 0.247460 CAGAGATCCGTCTTGGTGCA 59.753 55.000 0.00 0.00 39.52 4.57
2712 3320 3.749064 GCAGAGGACGGCGTCTCA 61.749 66.667 35.42 0.00 37.16 3.27
2721 3329 1.289066 CGGCGTCTCAGTTGGAAGA 59.711 57.895 0.00 0.00 0.00 2.87
2797 3417 2.747855 CGTTTGAGGAGCCCCAGC 60.748 66.667 0.00 0.00 40.32 4.85
2916 3641 0.689055 TGACTGACTGCTGGCTGATT 59.311 50.000 10.35 0.00 0.00 2.57
2940 3665 1.517242 GGCGATGGAATAAGCCAGAG 58.483 55.000 0.00 0.00 45.93 3.35
2949 3674 3.125316 GGAATAAGCCAGAGAACACGTTG 59.875 47.826 0.00 0.00 0.00 4.10
2951 3676 0.180406 AAGCCAGAGAACACGTTGGT 59.820 50.000 3.78 0.00 33.21 3.67
2952 3677 0.180406 AGCCAGAGAACACGTTGGTT 59.820 50.000 3.78 0.00 33.21 3.67
2959 3684 1.000646 AACACGTTGGTTGGTGGGT 60.001 52.632 0.00 0.00 38.46 4.51
2961 3686 1.452289 CACGTTGGTTGGTGGGTCA 60.452 57.895 0.00 0.00 0.00 4.02
2980 3705 1.004440 GTGGCAGTGGTCTGAGGTC 60.004 63.158 0.00 0.00 43.76 3.85
2986 3711 1.051812 AGTGGTCTGAGGTCCTTGTG 58.948 55.000 0.00 0.00 0.00 3.33
3023 3751 0.399833 GGATGGAGGATGGAGAAGGC 59.600 60.000 0.00 0.00 0.00 4.35
3026 3754 2.439104 GGAGGATGGAGAAGGCGCT 61.439 63.158 7.64 0.00 0.00 5.92
3113 3899 2.390599 CGGTGATTGGTGTCGGCAG 61.391 63.158 0.00 0.00 0.00 4.85
3186 3974 3.307906 CCCTGGAACGTGGACGGA 61.308 66.667 3.93 0.00 44.95 4.69
3190 3978 2.167398 CTGGAACGTGGACGGATGGT 62.167 60.000 3.93 0.00 44.95 3.55
3245 4036 3.641436 GGGGAAAAGGAACATGACAAGTT 59.359 43.478 0.00 0.00 0.00 2.66
3248 4039 5.507985 GGGAAAAGGAACATGACAAGTTCTG 60.508 44.000 19.71 0.00 43.67 3.02
3249 4040 5.507985 GGAAAAGGAACATGACAAGTTCTGG 60.508 44.000 19.71 0.00 43.67 3.86
3250 4041 4.437682 AAGGAACATGACAAGTTCTGGA 57.562 40.909 19.71 0.00 43.67 3.86
3269 4060 5.775195 TCTGGAAGCATATTCGATCTCCTTA 59.225 40.000 0.00 0.00 0.00 2.69
3337 4128 6.337356 TCTTTTCCAGCAAGAAAAATCGTTT 58.663 32.000 13.02 0.00 43.27 3.60
3392 4221 8.986477 ATTTTCTGTCTTTTGCCATTATGTAC 57.014 30.769 0.00 0.00 0.00 2.90
3394 4223 6.985188 TCTGTCTTTTGCCATTATGTACTC 57.015 37.500 0.00 0.00 0.00 2.59
3400 4229 9.056005 GTCTTTTGCCATTATGTACTCATCATA 57.944 33.333 0.00 0.00 35.70 2.15
3459 4291 4.922791 GCAGGTCGCAAACAAGAC 57.077 55.556 0.00 0.00 41.79 3.01
3461 4293 0.040958 GCAGGTCGCAAACAAGACAG 60.041 55.000 0.00 0.00 41.79 3.51
3463 4295 1.528586 CAGGTCGCAAACAAGACAGAG 59.471 52.381 0.00 0.00 39.01 3.35
3465 4297 1.795286 GGTCGCAAACAAGACAGAGAG 59.205 52.381 0.00 0.00 39.01 3.20
3466 4298 2.545952 GGTCGCAAACAAGACAGAGAGA 60.546 50.000 0.00 0.00 39.01 3.10
3467 4299 2.728839 GTCGCAAACAAGACAGAGAGAG 59.271 50.000 0.00 0.00 37.34 3.20
3469 4301 2.288457 CGCAAACAAGACAGAGAGAGGA 60.288 50.000 0.00 0.00 0.00 3.71
3470 4302 3.324993 GCAAACAAGACAGAGAGAGGAG 58.675 50.000 0.00 0.00 0.00 3.69
3471 4303 3.864160 GCAAACAAGACAGAGAGAGGAGG 60.864 52.174 0.00 0.00 0.00 4.30
3472 4304 3.534357 AACAAGACAGAGAGAGGAGGA 57.466 47.619 0.00 0.00 0.00 3.71
3473 4305 3.085952 ACAAGACAGAGAGAGGAGGAG 57.914 52.381 0.00 0.00 0.00 3.69
3474 4306 2.291540 ACAAGACAGAGAGAGGAGGAGG 60.292 54.545 0.00 0.00 0.00 4.30
3475 4307 1.979809 AGACAGAGAGAGGAGGAGGA 58.020 55.000 0.00 0.00 0.00 3.71
3476 4308 1.846439 AGACAGAGAGAGGAGGAGGAG 59.154 57.143 0.00 0.00 0.00 3.69
3477 4309 0.926293 ACAGAGAGAGGAGGAGGAGG 59.074 60.000 0.00 0.00 0.00 4.30
3478 4310 1.221635 CAGAGAGAGGAGGAGGAGGA 58.778 60.000 0.00 0.00 0.00 3.71
3479 4311 1.143684 CAGAGAGAGGAGGAGGAGGAG 59.856 61.905 0.00 0.00 0.00 3.69
3480 4312 0.478507 GAGAGAGGAGGAGGAGGAGG 59.521 65.000 0.00 0.00 0.00 4.30
3481 4313 0.047176 AGAGAGGAGGAGGAGGAGGA 59.953 60.000 0.00 0.00 0.00 3.71
3482 4314 0.478507 GAGAGGAGGAGGAGGAGGAG 59.521 65.000 0.00 0.00 0.00 3.69
3483 4315 0.998945 AGAGGAGGAGGAGGAGGAGG 60.999 65.000 0.00 0.00 0.00 4.30
3484 4316 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
3485 4317 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
3486 4318 0.996762 GGAGGAGGAGGAGGAGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
3487 4319 0.930726 GAGGAGGAGGAGGAGGAGAA 59.069 60.000 0.00 0.00 0.00 2.87
3488 4320 1.289530 GAGGAGGAGGAGGAGGAGAAA 59.710 57.143 0.00 0.00 0.00 2.52
3496 4328 1.119684 GAGGAGGAGAAAGAGGAGCC 58.880 60.000 0.00 0.00 0.00 4.70
3499 4331 1.608717 GAGGAGAAAGAGGAGCCGCA 61.609 60.000 0.00 0.00 0.00 5.69
3510 4342 2.676822 AGCCGCAGAAGACGAGGA 60.677 61.111 0.00 0.00 0.00 3.71
3522 4362 2.743928 CGAGGACAGCAGCCCAAC 60.744 66.667 0.00 0.00 0.00 3.77
3525 4365 1.228367 AGGACAGCAGCCCAACAAG 60.228 57.895 0.00 0.00 0.00 3.16
3540 4380 1.763968 ACAAGTCAGGGATCGATCGA 58.236 50.000 21.86 21.86 0.00 3.59
3541 4381 2.311463 ACAAGTCAGGGATCGATCGAT 58.689 47.619 29.76 29.76 37.59 3.59
3561 4405 0.179134 CGGATCCAACTCTGTCCGTC 60.179 60.000 13.41 0.00 46.29 4.79
3565 4409 1.372997 CCAACTCTGTCCGTCCGTG 60.373 63.158 0.00 0.00 0.00 4.94
3608 4467 1.004394 GTTCCCAAATTCCTCCTCCGT 59.996 52.381 0.00 0.00 0.00 4.69
3639 4503 4.803426 GCGACCGCCAGAGTCCTG 62.803 72.222 2.55 0.00 40.09 3.86
3660 4524 1.531149 CACTCCACAACAACCATCGAC 59.469 52.381 0.00 0.00 0.00 4.20
3670 4534 1.852067 AACCATCGACAACAAGCGCC 61.852 55.000 2.29 0.00 0.00 6.53
3673 4537 3.583276 ATCGACAACAAGCGCCCGA 62.583 57.895 2.29 2.42 0.00 5.14
3676 4540 4.927782 ACAACAAGCGCCCGAGCA 62.928 61.111 2.29 0.00 39.83 4.26
3735 4611 3.814268 CTTCCACCAATGGCGGCG 61.814 66.667 0.51 0.51 46.80 6.46
3796 4673 2.012673 CCGATCTCCTTTTCCTGCTTG 58.987 52.381 0.00 0.00 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.665369 CTCGAAAAGTGCGGGTACGT 60.665 55.000 0.00 0.00 43.45 3.57
2 3 0.387622 TCTCGAAAAGTGCGGGTACG 60.388 55.000 0.00 0.00 44.63 3.67
3 4 1.347320 CTCTCGAAAAGTGCGGGTAC 58.653 55.000 0.00 0.00 0.00 3.34
4 5 0.389426 GCTCTCGAAAAGTGCGGGTA 60.389 55.000 0.00 0.00 35.02 3.69
5 6 1.668151 GCTCTCGAAAAGTGCGGGT 60.668 57.895 0.00 0.00 35.02 5.28
6 7 1.355066 GAGCTCTCGAAAAGTGCGGG 61.355 60.000 6.43 0.00 46.70 6.13
7 8 2.074124 GAGCTCTCGAAAAGTGCGG 58.926 57.895 6.43 0.00 46.70 5.69
18 19 5.344066 TCATAACAGATTCAACGAGCTCTC 58.656 41.667 12.85 0.85 0.00 3.20
19 20 5.330455 TCATAACAGATTCAACGAGCTCT 57.670 39.130 12.85 0.00 0.00 4.09
20 21 6.478344 AGATTCATAACAGATTCAACGAGCTC 59.522 38.462 2.73 2.73 0.00 4.09
21 22 6.257411 CAGATTCATAACAGATTCAACGAGCT 59.743 38.462 0.00 0.00 0.00 4.09
22 23 6.036517 ACAGATTCATAACAGATTCAACGAGC 59.963 38.462 0.00 0.00 0.00 5.03
23 24 7.531280 ACAGATTCATAACAGATTCAACGAG 57.469 36.000 0.00 0.00 0.00 4.18
24 25 9.034544 CATACAGATTCATAACAGATTCAACGA 57.965 33.333 0.00 0.00 0.00 3.85
25 26 8.820933 ACATACAGATTCATAACAGATTCAACG 58.179 33.333 0.00 0.00 0.00 4.10
28 29 8.615211 GCAACATACAGATTCATAACAGATTCA 58.385 33.333 0.00 0.00 0.00 2.57
29 30 8.834465 AGCAACATACAGATTCATAACAGATTC 58.166 33.333 0.00 0.00 0.00 2.52
30 31 8.743085 AGCAACATACAGATTCATAACAGATT 57.257 30.769 0.00 0.00 0.00 2.40
31 32 9.265901 GTAGCAACATACAGATTCATAACAGAT 57.734 33.333 0.00 0.00 0.00 2.90
32 33 7.710907 GGTAGCAACATACAGATTCATAACAGA 59.289 37.037 0.00 0.00 0.00 3.41
33 34 7.495606 TGGTAGCAACATACAGATTCATAACAG 59.504 37.037 0.00 0.00 0.00 3.16
79 80 3.056821 GCATCTTAAACCCTTGGGAACAC 60.057 47.826 13.39 0.00 42.67 3.32
111 112 0.179076 TCCAGCGCATACACCAGATG 60.179 55.000 11.47 0.00 0.00 2.90
114 115 1.162181 CCATCCAGCGCATACACCAG 61.162 60.000 11.47 0.00 0.00 4.00
116 117 0.748005 AACCATCCAGCGCATACACC 60.748 55.000 11.47 0.00 0.00 4.16
124 125 0.108186 TGAGTAGCAACCATCCAGCG 60.108 55.000 0.00 0.00 0.00 5.18
125 126 1.373570 GTGAGTAGCAACCATCCAGC 58.626 55.000 0.00 0.00 0.00 4.85
127 128 1.357137 TGGTGAGTAGCAACCATCCA 58.643 50.000 0.00 0.00 31.36 3.41
128 129 2.092968 TGATGGTGAGTAGCAACCATCC 60.093 50.000 24.68 12.29 45.07 3.51
137 138 3.931468 CAGCTGAAACTGATGGTGAGTAG 59.069 47.826 8.42 0.00 40.25 2.57
162 163 3.624861 ACTTGACAAGAACTTGCTGTCTG 59.375 43.478 21.95 6.05 44.03 3.51
242 308 0.320697 AGCCCTTAACAGTCACGTCC 59.679 55.000 0.00 0.00 0.00 4.79
249 315 3.595190 ACCAAAAGAGCCCTTAACAGT 57.405 42.857 0.00 0.00 31.15 3.55
257 323 2.247358 TCATTCCAACCAAAAGAGCCC 58.753 47.619 0.00 0.00 0.00 5.19
258 324 5.185828 ACTTATCATTCCAACCAAAAGAGCC 59.814 40.000 0.00 0.00 0.00 4.70
260 326 6.434028 TCCACTTATCATTCCAACCAAAAGAG 59.566 38.462 0.00 0.00 0.00 2.85
261 327 6.310941 TCCACTTATCATTCCAACCAAAAGA 58.689 36.000 0.00 0.00 0.00 2.52
262 328 6.350445 CCTCCACTTATCATTCCAACCAAAAG 60.350 42.308 0.00 0.00 0.00 2.27
263 329 5.480073 CCTCCACTTATCATTCCAACCAAAA 59.520 40.000 0.00 0.00 0.00 2.44
279 346 6.953520 TCATATTCAATGTTTTCCCTCCACTT 59.046 34.615 0.00 0.00 0.00 3.16
321 388 7.342581 TGAACCAAAGGCATGAATAGTACATA 58.657 34.615 0.00 0.00 0.00 2.29
322 389 6.186957 TGAACCAAAGGCATGAATAGTACAT 58.813 36.000 0.00 0.00 0.00 2.29
323 390 5.565509 TGAACCAAAGGCATGAATAGTACA 58.434 37.500 0.00 0.00 0.00 2.90
324 391 5.880332 TCTGAACCAAAGGCATGAATAGTAC 59.120 40.000 0.00 0.00 0.00 2.73
349 416 4.314121 TCATTTTTCTTTTGCCCCATTCG 58.686 39.130 0.00 0.00 0.00 3.34
386 517 0.897863 TGCCCCATTCCTTCAAACCG 60.898 55.000 0.00 0.00 0.00 4.44
391 522 1.304052 CCGTTGCCCCATTCCTTCA 60.304 57.895 0.00 0.00 0.00 3.02
392 523 0.610785 TTCCGTTGCCCCATTCCTTC 60.611 55.000 0.00 0.00 0.00 3.46
399 530 0.395862 TCACTTTTTCCGTTGCCCCA 60.396 50.000 0.00 0.00 0.00 4.96
407 538 4.420168 TGAAAACTGCTTCACTTTTTCCG 58.580 39.130 0.00 0.00 37.21 4.30
415 546 6.454795 TGGGATAAAATGAAAACTGCTTCAC 58.545 36.000 0.00 0.00 38.12 3.18
445 576 9.525826 AAGTGGATGTTAGAATTCTCTTCATTT 57.474 29.630 12.24 1.54 32.70 2.32
448 579 6.881065 CCAAGTGGATGTTAGAATTCTCTTCA 59.119 38.462 12.24 10.04 37.39 3.02
482 619 8.177663 GTGCATAGAAATTCGATTTGAAAGAGA 58.822 33.333 0.00 0.00 40.71 3.10
483 620 7.163195 CGTGCATAGAAATTCGATTTGAAAGAG 59.837 37.037 0.00 0.00 40.71 2.85
485 622 6.960992 TCGTGCATAGAAATTCGATTTGAAAG 59.039 34.615 0.00 0.00 40.71 2.62
486 623 6.836953 TCGTGCATAGAAATTCGATTTGAAA 58.163 32.000 0.00 0.00 40.71 2.69
487 624 6.415798 TCGTGCATAGAAATTCGATTTGAA 57.584 33.333 0.00 0.00 41.81 2.69
488 625 6.257630 TCATCGTGCATAGAAATTCGATTTGA 59.742 34.615 2.26 0.00 36.20 2.69
489 626 6.421405 TCATCGTGCATAGAAATTCGATTTG 58.579 36.000 2.26 0.00 36.20 2.32
492 629 5.523552 TGTTCATCGTGCATAGAAATTCGAT 59.476 36.000 0.00 0.00 38.30 3.59
493 630 4.867608 TGTTCATCGTGCATAGAAATTCGA 59.132 37.500 0.00 0.00 0.00 3.71
494 631 5.142635 TGTTCATCGTGCATAGAAATTCG 57.857 39.130 0.00 0.00 0.00 3.34
495 632 6.684555 GTCTTGTTCATCGTGCATAGAAATTC 59.315 38.462 0.00 0.00 0.00 2.17
496 633 6.372659 AGTCTTGTTCATCGTGCATAGAAATT 59.627 34.615 0.00 0.00 0.00 1.82
497 634 5.877012 AGTCTTGTTCATCGTGCATAGAAAT 59.123 36.000 0.00 0.00 0.00 2.17
498 635 5.237815 AGTCTTGTTCATCGTGCATAGAAA 58.762 37.500 0.00 0.00 0.00 2.52
523 660 9.632638 AGAATGTTGTTATGCTGTTAAGGATAT 57.367 29.630 0.00 0.00 36.69 1.63
525 662 7.944729 AGAATGTTGTTATGCTGTTAAGGAT 57.055 32.000 0.00 0.00 38.21 3.24
526 663 8.726988 GTTAGAATGTTGTTATGCTGTTAAGGA 58.273 33.333 0.00 0.00 0.00 3.36
527 664 8.730680 AGTTAGAATGTTGTTATGCTGTTAAGG 58.269 33.333 0.00 0.00 0.00 2.69
598 736 9.083080 CGGTAATTGGAAAAGAACATTAATTCC 57.917 33.333 0.00 0.00 39.96 3.01
604 742 6.642707 TCACGGTAATTGGAAAAGAACATT 57.357 33.333 0.00 0.00 0.00 2.71
606 744 5.221087 GGTTCACGGTAATTGGAAAAGAACA 60.221 40.000 0.00 0.00 35.73 3.18
678 824 7.391148 AATGCAGAAATAATACAGGAACGTT 57.609 32.000 0.00 0.00 0.00 3.99
724 963 4.151121 TCATGTCAGAATTTTTGGGCTCA 58.849 39.130 0.00 0.00 0.00 4.26
761 1011 3.264947 CAGGCTCATGTTGAATTCGAGA 58.735 45.455 10.42 3.47 0.00 4.04
764 1014 3.189080 TGAACAGGCTCATGTTGAATTCG 59.811 43.478 4.56 0.00 43.32 3.34
779 1029 6.525628 CGAATTCATGTCAGAATTTGAACAGG 59.474 38.462 6.22 0.00 45.80 4.00
930 1180 0.532862 CGGGCAGTTGAGTTGACACT 60.533 55.000 0.00 0.00 35.17 3.55
933 1183 2.617274 GGCGGGCAGTTGAGTTGAC 61.617 63.158 0.00 0.00 0.00 3.18
934 1184 2.281484 GGCGGGCAGTTGAGTTGA 60.281 61.111 0.00 0.00 0.00 3.18
935 1185 2.133742 CTTGGCGGGCAGTTGAGTTG 62.134 60.000 3.91 0.00 0.00 3.16
938 1188 2.463589 TACCTTGGCGGGCAGTTGAG 62.464 60.000 3.91 0.00 36.97 3.02
1106 1374 2.039624 GGGACTGCAGGAGGAGGA 59.960 66.667 19.93 0.00 37.55 3.71
1131 1399 1.374758 GAGGTTGGAGGTGAGCACG 60.375 63.158 0.00 0.00 0.00 5.34
1134 1402 0.907230 AGGAGAGGTTGGAGGTGAGC 60.907 60.000 0.00 0.00 0.00 4.26
1356 1958 3.708220 GAGGAGCGAGTTGGCGAGG 62.708 68.421 0.00 0.00 38.18 4.63
1547 2149 1.296392 CCGGACAGCATGGAGTTGA 59.704 57.895 0.00 0.00 43.62 3.18
1593 2195 4.704833 TCGAACAGCTGCCTGGCC 62.705 66.667 17.53 0.00 43.53 5.36
1596 2198 3.114616 CCGTCGAACAGCTGCCTG 61.115 66.667 15.27 3.19 44.80 4.85
1597 2199 4.379243 CCCGTCGAACAGCTGCCT 62.379 66.667 15.27 0.00 0.00 4.75
1647 2249 1.298667 GGTGTACCCGACCAGCATT 59.701 57.895 0.00 0.00 33.25 3.56
1686 2288 1.153349 GTCGAACATCCTCCTGGCC 60.153 63.158 0.00 0.00 0.00 5.36
1880 2482 0.723414 CATCATCGCGTCAAACAGCT 59.277 50.000 5.77 0.00 0.00 4.24
1935 2537 0.679505 AGGCTGTAAGAACGCTCACA 59.320 50.000 0.00 0.00 34.07 3.58
1984 2586 2.753043 CAGGCCATGCACCCACTC 60.753 66.667 5.01 0.00 0.00 3.51
1995 2597 2.997315 CTCTGTCGGACCAGGCCA 60.997 66.667 5.01 0.00 33.14 5.36
2035 2637 2.048222 CGCCGTGAGCAAGAGGAA 60.048 61.111 0.00 0.00 44.04 3.36
2079 2681 1.300465 CCTCGCGGTCTCCATCATG 60.300 63.158 6.13 0.00 0.00 3.07
2080 2682 2.502492 CCCTCGCGGTCTCCATCAT 61.502 63.158 6.13 0.00 0.00 2.45
2224 2826 2.582498 GGTCGTCTCATTCGGCCG 60.582 66.667 22.12 22.12 42.93 6.13
2349 2951 1.031571 GGTCCATCATGCAGCCGAAA 61.032 55.000 0.00 0.00 0.00 3.46
2404 3006 1.079750 GCAGGTTCTGGACGAGGTC 60.080 63.158 0.00 0.00 31.21 3.85
2418 3020 1.301677 GGGACGCTTTCTCTTGCAGG 61.302 60.000 0.00 0.00 0.00 4.85
2419 3021 0.321122 AGGGACGCTTTCTCTTGCAG 60.321 55.000 0.00 0.00 25.50 4.41
2421 3023 1.301677 CCAGGGACGCTTTCTCTTGC 61.302 60.000 0.00 0.00 29.50 4.01
2426 3028 3.178540 AACGCCAGGGACGCTTTCT 62.179 57.895 0.00 0.00 0.00 2.52
2427 3029 2.668550 AACGCCAGGGACGCTTTC 60.669 61.111 0.00 0.00 0.00 2.62
2430 3032 4.988598 CACAACGCCAGGGACGCT 62.989 66.667 0.00 0.00 0.00 5.07
2449 3051 1.589716 GCTGAAGAAACCATGGCGCT 61.590 55.000 13.04 3.44 0.00 5.92
2536 3141 2.836360 GTATGGGCCGACCTCCGA 60.836 66.667 0.00 0.00 41.76 4.55
2550 3155 5.528043 AGATGTTCGAGAGCAGAATGTAT 57.472 39.130 0.00 0.00 39.31 2.29
2554 3159 3.793801 GCGTAGATGTTCGAGAGCAGAAT 60.794 47.826 0.00 0.00 0.00 2.40
2556 3161 1.064208 GCGTAGATGTTCGAGAGCAGA 59.936 52.381 0.00 0.00 0.00 4.26
2631 3236 1.271543 CCAACATCCTTCTCAGCACCA 60.272 52.381 0.00 0.00 0.00 4.17
2634 3239 2.886523 CAAACCAACATCCTTCTCAGCA 59.113 45.455 0.00 0.00 0.00 4.41
2646 3251 1.110442 CCACAAGGCTCAAACCAACA 58.890 50.000 0.00 0.00 0.00 3.33
2649 3254 0.482446 ATCCCACAAGGCTCAAACCA 59.518 50.000 0.00 0.00 34.51 3.67
2652 3257 0.776810 TGGATCCCACAAGGCTCAAA 59.223 50.000 9.90 0.00 34.51 2.69
2653 3258 0.329261 CTGGATCCCACAAGGCTCAA 59.671 55.000 9.90 0.00 34.51 3.02
2684 3292 1.533033 TCCTCTGCACCAAGACGGA 60.533 57.895 0.00 0.00 38.63 4.69
2697 3305 1.604023 AACTGAGACGCCGTCCTCT 60.604 57.895 14.60 0.00 32.18 3.69
2712 3320 1.210478 CCATCATCCCGTCTTCCAACT 59.790 52.381 0.00 0.00 0.00 3.16
2721 3329 3.399181 ACCACGCCATCATCCCGT 61.399 61.111 0.00 0.00 35.29 5.28
2807 3427 4.504916 CAGCTCCTCACGCCCTCG 62.505 72.222 0.00 0.00 42.43 4.63
2833 3550 1.913951 ATGCCATGACGCCAGAGGAA 61.914 55.000 0.00 0.00 0.00 3.36
2916 3641 1.270839 GGCTTATTCCATCGCCTGCTA 60.271 52.381 0.00 0.00 39.42 3.49
2940 3665 1.033202 ACCCACCAACCAACGTGTTC 61.033 55.000 0.00 0.00 0.00 3.18
2949 3674 2.597510 GCCACTGACCCACCAACC 60.598 66.667 0.00 0.00 0.00 3.77
2951 3676 2.382770 ACTGCCACTGACCCACCAA 61.383 57.895 0.00 0.00 0.00 3.67
2952 3677 2.772191 ACTGCCACTGACCCACCA 60.772 61.111 0.00 0.00 0.00 4.17
2959 3684 1.475169 CCTCAGACCACTGCCACTGA 61.475 60.000 0.00 0.00 43.17 3.41
2961 3686 1.460305 ACCTCAGACCACTGCCACT 60.460 57.895 0.00 0.00 43.17 4.00
2980 3705 1.584380 GCAAGAGCTGGAGCACAAGG 61.584 60.000 0.00 0.00 45.16 3.61
2986 3711 1.664321 CCATTGGCAAGAGCTGGAGC 61.664 60.000 11.33 0.00 41.70 4.70
3011 3739 2.279784 CGAGCGCCTTCTCCATCC 60.280 66.667 2.29 0.00 0.00 3.51
3036 3764 1.020333 CAGTTGAGCAGAGCAGAGCC 61.020 60.000 0.00 0.00 0.00 4.70
3097 3864 2.040544 CCCTGCCGACACCAATCAC 61.041 63.158 0.00 0.00 0.00 3.06
3101 3885 2.589157 CCTACCCTGCCGACACCAA 61.589 63.158 0.00 0.00 0.00 3.67
3113 3899 1.152419 GCTCTCCCTCTCCCTACCC 60.152 68.421 0.00 0.00 0.00 3.69
3186 3974 0.602562 CCGAATGCAAACACCACCAT 59.397 50.000 0.00 0.00 0.00 3.55
3190 3978 1.811965 CAGATCCGAATGCAAACACCA 59.188 47.619 0.00 0.00 0.00 4.17
3245 4036 4.155709 AGGAGATCGAATATGCTTCCAGA 58.844 43.478 0.00 0.00 0.00 3.86
3248 4039 5.866633 CAGTAAGGAGATCGAATATGCTTCC 59.133 44.000 5.20 0.00 34.06 3.46
3249 4040 5.866633 CCAGTAAGGAGATCGAATATGCTTC 59.133 44.000 5.20 0.00 41.22 3.86
3250 4041 5.788450 CCAGTAAGGAGATCGAATATGCTT 58.212 41.667 0.00 0.00 41.22 3.91
3302 4093 2.926586 GCTGGAAAAGATTTCGGTTGGC 60.927 50.000 0.00 0.00 0.00 4.52
3337 4128 4.989797 CCTGCAACAAATGTTAGCAATGAA 59.010 37.500 17.60 0.00 39.55 2.57
3342 4133 1.685517 TGCCTGCAACAAATGTTAGCA 59.314 42.857 16.67 16.67 38.62 3.49
3389 4218 1.985159 TGGGGCCCATATGATGAGTAC 59.015 52.381 24.76 0.74 0.00 2.73
3391 4220 0.773644 GTGGGGCCCATATGATGAGT 59.226 55.000 31.48 0.00 35.28 3.41
3392 4221 0.038744 GGTGGGGCCCATATGATGAG 59.961 60.000 31.48 0.00 35.28 2.90
3394 4223 0.251474 CAGGTGGGGCCCATATGATG 60.251 60.000 31.48 18.45 35.28 3.07
3448 4280 2.064762 CCTCTCTCTGTCTTGTTTGCG 58.935 52.381 0.00 0.00 0.00 4.85
3451 4283 3.831911 CTCCTCCTCTCTCTGTCTTGTTT 59.168 47.826 0.00 0.00 0.00 2.83
3454 4286 2.025416 TCCTCCTCCTCTCTCTGTCTTG 60.025 54.545 0.00 0.00 0.00 3.02
3455 4287 2.242196 CTCCTCCTCCTCTCTCTGTCTT 59.758 54.545 0.00 0.00 0.00 3.01
3459 4291 1.143684 CTCCTCCTCCTCCTCTCTCTG 59.856 61.905 0.00 0.00 0.00 3.35
3461 4293 0.478507 CCTCCTCCTCCTCCTCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
3463 4295 0.478507 CTCCTCCTCCTCCTCCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
3465 4297 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
3466 4298 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
3467 4299 0.996762 TCTCCTCCTCCTCCTCCTCC 60.997 65.000 0.00 0.00 0.00 4.30
3469 4301 1.290732 CTTTCTCCTCCTCCTCCTCCT 59.709 57.143 0.00 0.00 0.00 3.69
3470 4302 1.289530 TCTTTCTCCTCCTCCTCCTCC 59.710 57.143 0.00 0.00 0.00 4.30
3471 4303 2.666317 CTCTTTCTCCTCCTCCTCCTC 58.334 57.143 0.00 0.00 0.00 3.71
3472 4304 1.290732 CCTCTTTCTCCTCCTCCTCCT 59.709 57.143 0.00 0.00 0.00 3.69
3473 4305 1.289530 TCCTCTTTCTCCTCCTCCTCC 59.710 57.143 0.00 0.00 0.00 4.30
3474 4306 2.666317 CTCCTCTTTCTCCTCCTCCTC 58.334 57.143 0.00 0.00 0.00 3.71
3475 4307 1.342975 GCTCCTCTTTCTCCTCCTCCT 60.343 57.143 0.00 0.00 0.00 3.69
3476 4308 1.119684 GCTCCTCTTTCTCCTCCTCC 58.880 60.000 0.00 0.00 0.00 4.30
3477 4309 1.119684 GGCTCCTCTTTCTCCTCCTC 58.880 60.000 0.00 0.00 0.00 3.71
3478 4310 0.686112 CGGCTCCTCTTTCTCCTCCT 60.686 60.000 0.00 0.00 0.00 3.69
3479 4311 1.819905 CGGCTCCTCTTTCTCCTCC 59.180 63.158 0.00 0.00 0.00 4.30
3480 4312 1.142965 GCGGCTCCTCTTTCTCCTC 59.857 63.158 0.00 0.00 0.00 3.71
3481 4313 1.610673 TGCGGCTCCTCTTTCTCCT 60.611 57.895 0.00 0.00 0.00 3.69
3482 4314 1.153469 CTGCGGCTCCTCTTTCTCC 60.153 63.158 0.00 0.00 0.00 3.71
3483 4315 0.247736 TTCTGCGGCTCCTCTTTCTC 59.752 55.000 0.00 0.00 0.00 2.87
3484 4316 0.248843 CTTCTGCGGCTCCTCTTTCT 59.751 55.000 0.00 0.00 0.00 2.52
3485 4317 0.247736 TCTTCTGCGGCTCCTCTTTC 59.752 55.000 0.00 0.00 0.00 2.62
3486 4318 0.036858 GTCTTCTGCGGCTCCTCTTT 60.037 55.000 0.00 0.00 0.00 2.52
3487 4319 1.594310 GTCTTCTGCGGCTCCTCTT 59.406 57.895 0.00 0.00 0.00 2.85
3488 4320 2.705821 CGTCTTCTGCGGCTCCTCT 61.706 63.158 0.00 0.00 0.00 3.69
3496 4328 1.803519 GCTGTCCTCGTCTTCTGCG 60.804 63.158 0.00 0.00 0.00 5.18
3499 4331 1.589113 GCTGCTGTCCTCGTCTTCT 59.411 57.895 0.00 0.00 0.00 2.85
3510 4342 0.820891 CTGACTTGTTGGGCTGCTGT 60.821 55.000 0.00 0.00 0.00 4.40
3522 4362 2.940147 GATCGATCGATCCCTGACTTG 58.060 52.381 36.97 3.23 43.71 3.16
3543 4383 0.175989 GGACGGACAGAGTTGGATCC 59.824 60.000 4.20 4.20 0.00 3.36
3544 4384 0.179134 CGGACGGACAGAGTTGGATC 60.179 60.000 0.00 0.00 0.00 3.36
3546 4386 1.529948 ACGGACGGACAGAGTTGGA 60.530 57.895 0.00 0.00 0.00 3.53
3548 4388 2.022129 GCACGGACGGACAGAGTTG 61.022 63.158 0.00 0.00 0.00 3.16
3549 4389 0.892358 TAGCACGGACGGACAGAGTT 60.892 55.000 0.00 0.00 0.00 3.01
3550 4390 0.680280 ATAGCACGGACGGACAGAGT 60.680 55.000 0.00 0.00 0.00 3.24
3551 4391 1.306148 TATAGCACGGACGGACAGAG 58.694 55.000 0.00 0.00 0.00 3.35
3554 4398 1.402968 GTCTTATAGCACGGACGGACA 59.597 52.381 0.00 0.00 0.00 4.02
3561 4405 0.384309 TGGCTCGTCTTATAGCACGG 59.616 55.000 5.89 0.08 40.61 4.94
3565 4409 0.940047 GCGGTGGCTCGTCTTATAGC 60.940 60.000 3.22 0.00 38.03 2.97
3625 4489 4.008933 GTGCAGGACTCTGGCGGT 62.009 66.667 0.00 0.00 41.19 5.68
3626 4490 3.655810 GAGTGCAGGACTCTGGCGG 62.656 68.421 14.63 0.00 46.85 6.13
3627 4491 2.125753 GAGTGCAGGACTCTGGCG 60.126 66.667 14.63 0.00 46.85 5.69
3639 4503 0.238289 CGATGGTTGTTGTGGAGTGC 59.762 55.000 0.00 0.00 0.00 4.40
3660 4524 4.389576 GTGCTCGGGCGCTTGTTG 62.390 66.667 15.01 0.00 44.66 3.33
3748 4624 0.482446 TGGTGGTGGAGGAAGCAATT 59.518 50.000 0.00 0.00 0.00 2.32
3750 4626 1.150536 GTGGTGGTGGAGGAAGCAA 59.849 57.895 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.