Multiple sequence alignment - TraesCS7A01G025600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G025600 chr7A 100.000 3023 0 0 1 3023 10158671 10155649 0.000000e+00 5583.0
1 TraesCS7A01G025600 chr7A 79.160 1833 244 75 999 2715 10092033 10090223 0.000000e+00 1142.0
2 TraesCS7A01G025600 chr7A 78.895 1810 253 61 897 2630 10170072 10168316 0.000000e+00 1107.0
3 TraesCS7A01G025600 chr7A 77.662 1625 276 56 1024 2589 114414375 114412779 0.000000e+00 909.0
4 TraesCS7A01G025600 chr7A 76.857 1629 285 51 1024 2587 114688743 114687142 0.000000e+00 835.0
5 TraesCS7A01G025600 chr7A 80.103 975 144 32 1767 2720 10168220 10167275 0.000000e+00 680.0
6 TraesCS7A01G025600 chr7A 75.930 1371 230 49 1029 2333 9669848 9668512 1.990000e-171 612.0
7 TraesCS7A01G025600 chr7A 74.392 1687 299 64 925 2541 10269602 10271225 1.550000e-167 599.0
8 TraesCS7A01G025600 chr7A 80.469 384 54 13 1003 1370 1526772 1526394 1.070000e-69 274.0
9 TraesCS7A01G025600 chr7A 80.526 380 41 14 1015 1370 846055 846425 8.310000e-66 261.0
10 TraesCS7A01G025600 chr7A 81.877 309 41 13 2373 2677 10105457 10105160 2.330000e-61 246.0
11 TraesCS7A01G025600 chr7A 76.899 316 42 15 2422 2721 9668459 9668159 1.880000e-32 150.0
12 TraesCS7A01G025600 chr7A 77.778 279 39 15 2749 3023 10168821 10168562 1.880000e-32 150.0
13 TraesCS7A01G025600 chr7D 79.529 1827 244 59 999 2715 10963662 10961856 0.000000e+00 1182.0
14 TraesCS7A01G025600 chr7D 79.385 1659 234 46 1037 2632 10974205 10972592 0.000000e+00 1070.0
15 TraesCS7A01G025600 chr7D 77.912 1743 280 60 1003 2677 109144714 109143009 0.000000e+00 989.0
16 TraesCS7A01G025600 chr7D 75.486 1750 320 66 1003 2677 8818867 8820582 0.000000e+00 754.0
17 TraesCS7A01G025600 chr7D 79.467 1013 168 25 1764 2751 10972502 10971505 0.000000e+00 682.0
18 TraesCS7A01G025600 chr7D 77.612 804 144 21 1547 2333 8870709 8871493 3.550000e-124 455.0
19 TraesCS7A01G025600 chr7D 75.687 946 189 25 1378 2300 9224290 9225217 4.630000e-118 435.0
20 TraesCS7A01G025600 chr7D 76.829 656 93 34 1028 1629 9354855 9355505 6.290000e-82 315.0
21 TraesCS7A01G025600 chr7D 81.818 374 41 15 1024 1370 1520517 1520144 3.810000e-74 289.0
22 TraesCS7A01G025600 chr7D 85.217 230 19 9 897 1115 10975607 10975382 3.920000e-54 222.0
23 TraesCS7A01G025600 chr7D 82.129 263 39 6 2749 3008 8871261 8871518 5.070000e-53 219.0
24 TraesCS7A01G025600 chr7D 79.496 278 36 15 2749 3023 10973101 10972842 8.610000e-41 178.0
25 TraesCS7A01G025600 chr7D 77.931 290 46 14 2435 2721 10464204 10463930 6.700000e-37 165.0
26 TraesCS7A01G025600 chr7D 88.889 81 3 4 897 972 10974299 10974220 8.920000e-16 95.3
27 TraesCS7A01G025600 chr7B 78.313 1766 287 65 1006 2707 68223641 68221908 0.000000e+00 1051.0
28 TraesCS7A01G025600 chr7B 78.015 1733 290 56 1006 2677 68160692 68158990 0.000000e+00 1005.0
29 TraesCS7A01G025600 chr7B 100.000 28 0 0 1337 1364 723971042 723971069 5.000000e-03 52.8
30 TraesCS7A01G025600 chr4B 77.829 1750 259 65 1003 2677 654201953 654203648 0.000000e+00 963.0
31 TraesCS7A01G025600 chr4B 82.759 522 74 16 104 619 532263574 532264085 4.600000e-123 451.0
32 TraesCS7A01G025600 chr4B 81.498 227 39 1 2749 2975 654203100 654203323 1.850000e-42 183.0
33 TraesCS7A01G025600 chr4B 75.682 403 53 26 461 857 532263854 532264217 3.120000e-35 159.0
34 TraesCS7A01G025600 chr4B 72.932 532 102 31 375 886 116030043 116029534 2.430000e-31 147.0
35 TraesCS7A01G025600 chr4D 77.663 1737 249 70 1024 2677 507352215 507350535 0.000000e+00 929.0
36 TraesCS7A01G025600 chr4D 78.686 563 89 24 105 643 503749485 503748930 2.230000e-91 346.0
37 TraesCS7A01G025600 chr5A 78.143 1368 211 51 1003 2299 691821009 691822359 0.000000e+00 789.0
38 TraesCS7A01G025600 chr6D 78.522 1164 192 32 1003 2119 84280127 84281279 0.000000e+00 712.0
39 TraesCS7A01G025600 chr6D 80.986 426 59 18 464 880 320718523 320718111 4.860000e-83 318.0
40 TraesCS7A01G025600 chr4A 74.348 1688 312 73 1058 2665 728443501 728441855 9.270000e-170 606.0
41 TraesCS7A01G025600 chr4A 78.178 944 156 29 1797 2719 728357563 728356649 9.470000e-155 556.0
42 TraesCS7A01G025600 chr4A 78.625 800 99 35 897 1629 727122914 727123708 5.900000e-127 464.0
43 TraesCS7A01G025600 chr4A 87.833 263 23 4 1024 1277 743634605 743634867 1.760000e-77 300.0
44 TraesCS7A01G025600 chr5D 76.972 469 83 21 415 876 522302130 522302580 8.370000e-61 244.0
45 TraesCS7A01G025600 chr1A 75.973 591 65 38 1086 1613 589182063 589181487 1.810000e-57 233.0
46 TraesCS7A01G025600 chrUn 87.245 196 24 1 702 897 305944496 305944302 3.920000e-54 222.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G025600 chr7A 10155649 10158671 3022 True 5583.000000 5583 100.000000 1 3023 1 chr7A.!!$R4 3022
1 TraesCS7A01G025600 chr7A 10090223 10092033 1810 True 1142.000000 1142 79.160000 999 2715 1 chr7A.!!$R2 1716
2 TraesCS7A01G025600 chr7A 114412779 114414375 1596 True 909.000000 909 77.662000 1024 2589 1 chr7A.!!$R5 1565
3 TraesCS7A01G025600 chr7A 114687142 114688743 1601 True 835.000000 835 76.857000 1024 2587 1 chr7A.!!$R6 1563
4 TraesCS7A01G025600 chr7A 10167275 10170072 2797 True 645.666667 1107 78.925333 897 3023 3 chr7A.!!$R8 2126
5 TraesCS7A01G025600 chr7A 10269602 10271225 1623 False 599.000000 599 74.392000 925 2541 1 chr7A.!!$F2 1616
6 TraesCS7A01G025600 chr7A 9668159 9669848 1689 True 381.000000 612 76.414500 1029 2721 2 chr7A.!!$R7 1692
7 TraesCS7A01G025600 chr7D 10961856 10963662 1806 True 1182.000000 1182 79.529000 999 2715 1 chr7D.!!$R3 1716
8 TraesCS7A01G025600 chr7D 109143009 109144714 1705 True 989.000000 989 77.912000 1003 2677 1 chr7D.!!$R4 1674
9 TraesCS7A01G025600 chr7D 8818867 8820582 1715 False 754.000000 754 75.486000 1003 2677 1 chr7D.!!$F1 1674
10 TraesCS7A01G025600 chr7D 10971505 10975607 4102 True 449.460000 1070 82.490800 897 3023 5 chr7D.!!$R5 2126
11 TraesCS7A01G025600 chr7D 9224290 9225217 927 False 435.000000 435 75.687000 1378 2300 1 chr7D.!!$F2 922
12 TraesCS7A01G025600 chr7D 8870709 8871518 809 False 337.000000 455 79.870500 1547 3008 2 chr7D.!!$F4 1461
13 TraesCS7A01G025600 chr7D 9354855 9355505 650 False 315.000000 315 76.829000 1028 1629 1 chr7D.!!$F3 601
14 TraesCS7A01G025600 chr7B 68221908 68223641 1733 True 1051.000000 1051 78.313000 1006 2707 1 chr7B.!!$R2 1701
15 TraesCS7A01G025600 chr7B 68158990 68160692 1702 True 1005.000000 1005 78.015000 1006 2677 1 chr7B.!!$R1 1671
16 TraesCS7A01G025600 chr4B 654201953 654203648 1695 False 573.000000 963 79.663500 1003 2975 2 chr4B.!!$F2 1972
17 TraesCS7A01G025600 chr4B 532263574 532264217 643 False 305.000000 451 79.220500 104 857 2 chr4B.!!$F1 753
18 TraesCS7A01G025600 chr4D 507350535 507352215 1680 True 929.000000 929 77.663000 1024 2677 1 chr4D.!!$R2 1653
19 TraesCS7A01G025600 chr4D 503748930 503749485 555 True 346.000000 346 78.686000 105 643 1 chr4D.!!$R1 538
20 TraesCS7A01G025600 chr5A 691821009 691822359 1350 False 789.000000 789 78.143000 1003 2299 1 chr5A.!!$F1 1296
21 TraesCS7A01G025600 chr6D 84280127 84281279 1152 False 712.000000 712 78.522000 1003 2119 1 chr6D.!!$F1 1116
22 TraesCS7A01G025600 chr4A 728441855 728443501 1646 True 606.000000 606 74.348000 1058 2665 1 chr4A.!!$R2 1607
23 TraesCS7A01G025600 chr4A 728356649 728357563 914 True 556.000000 556 78.178000 1797 2719 1 chr4A.!!$R1 922
24 TraesCS7A01G025600 chr4A 727122914 727123708 794 False 464.000000 464 78.625000 897 1629 1 chr4A.!!$F1 732
25 TraesCS7A01G025600 chr1A 589181487 589182063 576 True 233.000000 233 75.973000 1086 1613 1 chr1A.!!$R1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 99 0.036732 ACGACATGACATGGCCTGTT 59.963 50.0 19.39 0.00 38.54 3.16 F
115 116 0.179174 GTTTATCAAACTGGCGCCCG 60.179 55.0 26.77 21.78 38.35 6.13 F
1685 3139 0.177141 GGCGGTATGCTGTACCTGAA 59.823 55.0 14.30 0.00 45.43 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1478 2920 0.179084 CGGATCGAAAGCCAAGCCTA 60.179 55.0 0.0 0.0 0.0 3.93 R
1762 3222 0.322322 AACATTCGAGGGTACGGCAA 59.678 50.0 0.0 0.0 0.0 4.52 R
2848 4694 0.530288 AGTTCAGCCGAGAGAAGAGC 59.470 55.0 0.0 0.0 0.0 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.507547 CTAAACGCGCCGTGCCTA 60.508 61.111 5.73 0.00 39.99 3.93
27 28 2.048409 TAAACGCGCCGTGCCTAA 60.048 55.556 5.73 0.00 39.99 2.69
28 29 2.287637 CTAAACGCGCCGTGCCTAAC 62.288 60.000 5.73 0.00 39.99 2.34
29 30 4.973055 AACGCGCCGTGCCTAACA 62.973 61.111 5.73 0.00 39.99 2.41
54 55 4.335647 CGACAGGGGGCTGTGCTT 62.336 66.667 0.00 0.00 37.74 3.91
55 56 2.674380 GACAGGGGGCTGTGCTTG 60.674 66.667 0.00 0.00 37.74 4.01
56 57 4.290622 ACAGGGGGCTGTGCTTGG 62.291 66.667 0.00 0.00 36.05 3.61
61 62 4.047125 GGGCTGTGCTTGGGCCTA 62.047 66.667 4.53 0.00 44.70 3.93
62 63 2.439156 GGCTGTGCTTGGGCCTAG 60.439 66.667 10.87 10.87 42.31 3.02
63 64 2.671070 GCTGTGCTTGGGCCTAGA 59.329 61.111 19.48 1.22 37.74 2.43
64 65 1.451028 GCTGTGCTTGGGCCTAGAG 60.451 63.158 19.48 8.37 37.74 2.43
65 66 1.222936 CTGTGCTTGGGCCTAGAGG 59.777 63.158 19.48 1.37 37.74 3.69
75 76 3.225235 CCTAGAGGCTGGGCAGAC 58.775 66.667 0.00 0.00 36.46 3.51
76 77 1.687146 CCTAGAGGCTGGGCAGACA 60.687 63.158 0.00 0.00 39.50 3.41
77 78 1.684386 CCTAGAGGCTGGGCAGACAG 61.684 65.000 0.00 0.00 39.50 3.51
78 79 1.684386 CTAGAGGCTGGGCAGACAGG 61.684 65.000 0.00 0.00 39.50 4.00
79 80 2.168272 TAGAGGCTGGGCAGACAGGA 62.168 60.000 0.00 0.00 39.50 3.86
80 81 3.322318 GAGGCTGGGCAGACAGGAC 62.322 68.421 0.00 0.00 39.50 3.85
81 82 4.767255 GGCTGGGCAGACAGGACG 62.767 72.222 4.76 0.00 38.90 4.79
82 83 3.695606 GCTGGGCAGACAGGACGA 61.696 66.667 0.00 0.00 38.90 4.20
83 84 2.262915 CTGGGCAGACAGGACGAC 59.737 66.667 0.00 0.00 34.84 4.34
84 85 2.523168 TGGGCAGACAGGACGACA 60.523 61.111 0.00 0.00 0.00 4.35
85 86 1.892819 CTGGGCAGACAGGACGACAT 61.893 60.000 0.00 0.00 34.84 3.06
86 87 1.448540 GGGCAGACAGGACGACATG 60.449 63.158 0.00 0.00 0.00 3.21
87 88 1.591703 GGCAGACAGGACGACATGA 59.408 57.895 6.53 0.00 0.00 3.07
88 89 0.737715 GGCAGACAGGACGACATGAC 60.738 60.000 6.53 0.00 0.00 3.06
89 90 0.038251 GCAGACAGGACGACATGACA 60.038 55.000 6.53 0.00 0.00 3.58
90 91 1.404717 GCAGACAGGACGACATGACAT 60.405 52.381 6.53 0.00 0.00 3.06
91 92 2.265683 CAGACAGGACGACATGACATG 58.734 52.381 14.02 14.02 0.00 3.21
92 93 1.205655 AGACAGGACGACATGACATGG 59.794 52.381 19.39 5.35 33.60 3.66
93 94 0.391661 ACAGGACGACATGACATGGC 60.392 55.000 19.39 15.78 33.97 4.40
94 95 1.091771 CAGGACGACATGACATGGCC 61.092 60.000 19.39 13.78 33.66 5.36
95 96 1.221840 GGACGACATGACATGGCCT 59.778 57.895 19.39 6.43 33.66 5.19
96 97 1.091771 GGACGACATGACATGGCCTG 61.092 60.000 19.39 1.76 33.66 4.85
97 98 0.391661 GACGACATGACATGGCCTGT 60.392 55.000 19.39 9.48 42.15 4.00
98 99 0.036732 ACGACATGACATGGCCTGTT 59.963 50.000 19.39 0.00 38.54 3.16
99 100 1.167851 CGACATGACATGGCCTGTTT 58.832 50.000 19.39 0.00 38.54 2.83
100 101 2.290008 ACGACATGACATGGCCTGTTTA 60.290 45.455 19.39 0.39 38.54 2.01
101 102 2.945008 CGACATGACATGGCCTGTTTAT 59.055 45.455 19.39 2.72 38.54 1.40
102 103 3.002656 CGACATGACATGGCCTGTTTATC 59.997 47.826 19.39 3.96 38.54 1.75
115 116 0.179174 GTTTATCAAACTGGCGCCCG 60.179 55.000 26.77 21.78 38.35 6.13
213 215 0.741221 AGGATTCGAGCTTGAACCGC 60.741 55.000 18.81 10.84 0.00 5.68
238 241 2.380084 TAAAGACCGCAGTGCCTAAG 57.620 50.000 10.11 0.00 0.00 2.18
323 326 8.347004 TCCTATTTCTTGCACATACATTTCAA 57.653 30.769 0.00 0.00 0.00 2.69
459 486 5.903764 TGCAAAAAGTTCATTGATTTCGG 57.096 34.783 5.74 0.00 0.00 4.30
460 487 5.595885 TGCAAAAAGTTCATTGATTTCGGA 58.404 33.333 5.74 0.00 0.00 4.55
631 691 6.700352 TCATCAAATTTGGGAAAAGGTCATC 58.300 36.000 17.90 0.00 0.00 2.92
637 697 7.660030 AATTTGGGAAAAGGTCATCGATATT 57.340 32.000 0.00 0.00 0.00 1.28
861 946 9.822727 AAAAGTAGAAGGAATAAAAGAATGGGA 57.177 29.630 0.00 0.00 0.00 4.37
862 947 9.822727 AAAGTAGAAGGAATAAAAGAATGGGAA 57.177 29.630 0.00 0.00 0.00 3.97
863 948 9.822727 AAGTAGAAGGAATAAAAGAATGGGAAA 57.177 29.630 0.00 0.00 0.00 3.13
864 949 9.467796 AGTAGAAGGAATAAAAGAATGGGAAAG 57.532 33.333 0.00 0.00 0.00 2.62
865 950 9.462606 GTAGAAGGAATAAAAGAATGGGAAAGA 57.537 33.333 0.00 0.00 0.00 2.52
881 966 9.699410 AATGGGAAAGATAAACATTATCAGACA 57.301 29.630 11.50 4.91 30.65 3.41
882 967 9.699410 ATGGGAAAGATAAACATTATCAGACAA 57.301 29.630 11.50 0.00 0.00 3.18
883 968 9.177608 TGGGAAAGATAAACATTATCAGACAAG 57.822 33.333 11.50 0.00 0.00 3.16
884 969 8.624776 GGGAAAGATAAACATTATCAGACAAGG 58.375 37.037 11.50 0.00 0.00 3.61
885 970 9.178758 GGAAAGATAAACATTATCAGACAAGGT 57.821 33.333 11.50 0.00 0.00 3.50
888 973 9.838339 AAGATAAACATTATCAGACAAGGTAGG 57.162 33.333 11.50 0.00 0.00 3.18
889 974 9.213777 AGATAAACATTATCAGACAAGGTAGGA 57.786 33.333 11.50 0.00 0.00 2.94
893 978 8.783660 AACATTATCAGACAAGGTAGGATAGA 57.216 34.615 0.00 0.00 0.00 1.98
894 979 8.415950 ACATTATCAGACAAGGTAGGATAGAG 57.584 38.462 0.00 0.00 0.00 2.43
895 980 7.453126 ACATTATCAGACAAGGTAGGATAGAGG 59.547 40.741 0.00 0.00 0.00 3.69
924 1009 3.327404 ATCACCGACCACCACCCC 61.327 66.667 0.00 0.00 0.00 4.95
935 1025 2.443324 CCACCCCGGTTTTCCCAT 59.557 61.111 0.00 0.00 36.42 4.00
972 1066 1.270274 CTCTCTCCATCTGCAGATCGG 59.730 57.143 26.44 26.55 31.21 4.18
975 1069 1.756408 CTCCATCTGCAGATCGGCCT 61.756 60.000 26.44 2.36 31.21 5.19
980 1074 2.685017 TGCAGATCGGCCTGACCT 60.685 61.111 15.47 0.00 36.29 3.85
982 1076 2.725312 GCAGATCGGCCTGACCTGA 61.725 63.158 19.41 0.83 36.29 3.86
983 1077 1.142748 CAGATCGGCCTGACCTGAC 59.857 63.158 12.16 0.00 36.29 3.51
984 1078 2.060980 AGATCGGCCTGACCTGACC 61.061 63.158 0.00 0.00 35.61 4.02
985 1079 3.083997 ATCGGCCTGACCTGACCC 61.084 66.667 0.00 0.00 35.61 4.46
986 1080 3.625632 ATCGGCCTGACCTGACCCT 62.626 63.158 0.00 0.00 35.61 4.34
987 1081 4.087892 CGGCCTGACCTGACCCTG 62.088 72.222 0.00 0.00 35.61 4.45
988 1082 2.930562 GGCCTGACCTGACCCTGT 60.931 66.667 0.00 0.00 34.51 4.00
989 1083 2.348998 GCCTGACCTGACCCTGTG 59.651 66.667 0.00 0.00 0.00 3.66
991 1085 2.348998 CTGACCTGACCCTGTGCC 59.651 66.667 0.00 0.00 0.00 5.01
993 1087 4.394712 GACCTGACCCTGTGCCGG 62.395 72.222 0.00 0.00 0.00 6.13
995 1089 4.704833 CCTGACCCTGTGCCGGTG 62.705 72.222 1.90 0.00 32.27 4.94
1013 1116 2.764128 TCCCATGGAGGCGGAGAC 60.764 66.667 15.22 0.00 35.39 3.36
1206 2579 4.347453 CGCAACAAGCTGCCCCAC 62.347 66.667 0.00 0.00 42.61 4.61
1229 2602 2.105128 CGCCGGCTTCCTCTACAG 59.895 66.667 26.68 0.00 0.00 2.74
1239 2615 2.461300 TCCTCTACAGGACCATCAGG 57.539 55.000 0.00 0.00 44.75 3.86
1302 2705 2.032071 CCGTTCGACCCTTGCCTT 59.968 61.111 0.00 0.00 0.00 4.35
1371 2774 2.055042 CCTCCTCTACCGCAGCTGT 61.055 63.158 16.64 0.00 0.00 4.40
1372 2775 1.140589 CTCCTCTACCGCAGCTGTG 59.859 63.158 20.56 20.56 0.00 3.66
1393 2829 2.017049 CCAACAGGGATGATTTCCGTC 58.983 52.381 0.00 0.00 46.52 4.79
1446 2882 1.068943 TGGAGTTACCCCCAAAGCCA 61.069 55.000 0.00 0.00 38.00 4.75
1478 2920 2.357009 CGAGTACAAGTAGCCGTACCAT 59.643 50.000 0.00 0.00 39.03 3.55
1503 2945 2.105528 GCTTTCGATCCGGCGGTA 59.894 61.111 27.32 13.31 0.00 4.02
1542 2984 2.872245 TCTTTGTTTCGAGCAGACCTTG 59.128 45.455 0.00 0.00 0.00 3.61
1616 3061 1.826096 GAGTCTTAGGGACAGTGGGAC 59.174 57.143 0.00 0.00 46.72 4.46
1629 3074 1.070289 AGTGGGACGGTTGAGAAAGTC 59.930 52.381 0.00 0.00 0.00 3.01
1639 3087 3.403968 GTTGAGAAAGTCACCCTCTTCC 58.596 50.000 0.00 0.00 33.71 3.46
1642 3090 1.896465 AGAAAGTCACCCTCTTCCTCG 59.104 52.381 0.00 0.00 0.00 4.63
1643 3091 0.977395 AAAGTCACCCTCTTCCTCGG 59.023 55.000 0.00 0.00 0.00 4.63
1644 3092 0.905337 AAGTCACCCTCTTCCTCGGG 60.905 60.000 0.00 0.00 46.26 5.14
1661 3109 4.202030 CCTCGGGAGTAGTAAATGTGTCTC 60.202 50.000 0.00 0.00 0.00 3.36
1685 3139 0.177141 GGCGGTATGCTGTACCTGAA 59.823 55.000 14.30 0.00 45.43 3.02
1689 3143 2.806745 CGGTATGCTGTACCTGAATGGG 60.807 54.545 14.30 0.00 41.11 4.00
1692 3146 2.787473 TGCTGTACCTGAATGGGAAG 57.213 50.000 0.00 0.00 41.11 3.46
1702 3162 0.743097 GAATGGGAAGCTGCACATCC 59.257 55.000 10.76 0.00 0.00 3.51
1712 3172 3.876198 GCACATCCGCGGCGATTT 61.876 61.111 25.92 0.00 0.00 2.17
1725 3185 1.080569 CGATTTTGTGCTGGTGGGC 60.081 57.895 0.00 0.00 0.00 5.36
1778 3238 1.520666 CCTTGCCGTACCCTCGAAT 59.479 57.895 0.00 0.00 0.00 3.34
1779 3239 0.810031 CCTTGCCGTACCCTCGAATG 60.810 60.000 0.00 0.00 0.00 2.67
1790 3250 3.606687 ACCCTCGAATGTTTGGTATGAC 58.393 45.455 0.00 0.00 0.00 3.06
1847 3316 4.248859 CCTCCTGCCGATGATAACAATAG 58.751 47.826 0.00 0.00 0.00 1.73
1857 3326 7.360438 GCCGATGATAACAATAGAATCCTGTTC 60.360 40.741 0.00 0.00 35.09 3.18
1891 3360 2.268920 GGTGCCTCAAGGATCGCA 59.731 61.111 0.00 0.00 37.39 5.10
1909 3378 6.483640 GGATCGCAATAGTAAAGAATTGGTCT 59.516 38.462 0.00 0.00 38.69 3.85
1950 3425 2.371841 TGATAAGCTTATGACCGGGCAT 59.628 45.455 29.29 29.29 0.00 4.40
1992 3467 3.930336 TCATCCAGATTGCGATACCATC 58.070 45.455 0.00 0.00 0.00 3.51
2001 3476 3.667497 TGCGATACCATCTTCCTGATC 57.333 47.619 0.00 0.00 32.05 2.92
2021 3496 9.418839 CCTGATCTCATATGAAGATGATACCTA 57.581 37.037 17.19 2.49 35.32 3.08
2039 3521 2.812591 CCTAGGTATCGTACGACATGCT 59.187 50.000 22.14 6.85 0.00 3.79
2061 3543 5.079689 TGCATCAGAAAGTTGACCGTATA 57.920 39.130 0.00 0.00 0.00 1.47
2062 3544 5.109210 TGCATCAGAAAGTTGACCGTATAG 58.891 41.667 0.00 0.00 0.00 1.31
2080 3568 9.751542 ACCGTATAGTTAATCTTGAGAAAGATG 57.248 33.333 1.90 0.00 39.33 2.90
2086 3574 8.211116 AGTTAATCTTGAGAAAGATGATGCAG 57.789 34.615 1.90 0.00 39.33 4.41
2134 3634 6.154192 TCTGTTCTCAGAGTCATTAGCAGATT 59.846 38.462 0.00 0.00 44.58 2.40
2137 3637 5.900425 TCTCAGAGTCATTAGCAGATTGAC 58.100 41.667 0.00 5.84 38.28 3.18
2138 3638 4.676546 TCAGAGTCATTAGCAGATTGACG 58.323 43.478 0.00 0.00 41.39 4.35
2139 3639 3.244814 CAGAGTCATTAGCAGATTGACGC 59.755 47.826 8.40 8.40 41.39 5.19
2147 3647 2.034879 CAGATTGACGCGGGCAGTT 61.035 57.895 12.47 0.00 0.00 3.16
2148 3648 1.302511 AGATTGACGCGGGCAGTTT 60.303 52.632 12.47 0.00 0.00 2.66
2150 3650 0.039527 GATTGACGCGGGCAGTTTTT 60.040 50.000 12.47 0.00 0.00 1.94
2173 3674 1.851658 AACGTTCAAACCATGCTTGC 58.148 45.000 0.00 0.00 0.00 4.01
2197 3699 1.208052 TCCTCCGAGAATTGGCTCTTG 59.792 52.381 0.00 0.00 40.51 3.02
2218 3720 1.138266 TGCCGGCTTAACTATCTGTCC 59.862 52.381 29.70 0.00 0.00 4.02
2230 3732 0.671781 ATCTGTCCGTGTGCTTCTGC 60.672 55.000 0.00 0.00 40.20 4.26
2247 3749 2.357952 TCTGCATCTGCTTCAATCATGC 59.642 45.455 3.53 0.00 42.66 4.06
2250 3752 1.001706 CATCTGCTTCAATCATGCCGG 60.002 52.381 0.00 0.00 0.00 6.13
2252 3754 0.099968 CTGCTTCAATCATGCCGGTG 59.900 55.000 1.90 0.00 0.00 4.94
2258 3761 4.497300 CTTCAATCATGCCGGTGAATTTT 58.503 39.130 1.90 0.00 30.06 1.82
2300 3819 4.090761 TGCTTGATTTCCAGTTCAGAGT 57.909 40.909 0.00 0.00 0.00 3.24
2301 3820 4.464008 TGCTTGATTTCCAGTTCAGAGTT 58.536 39.130 0.00 0.00 0.00 3.01
2302 3821 4.516698 TGCTTGATTTCCAGTTCAGAGTTC 59.483 41.667 0.00 0.00 0.00 3.01
2303 3822 4.516698 GCTTGATTTCCAGTTCAGAGTTCA 59.483 41.667 0.00 0.00 0.00 3.18
2304 3823 5.334724 GCTTGATTTCCAGTTCAGAGTTCAG 60.335 44.000 0.00 0.00 0.00 3.02
2305 3824 5.551305 TGATTTCCAGTTCAGAGTTCAGA 57.449 39.130 0.00 0.00 0.00 3.27
2306 3825 5.545588 TGATTTCCAGTTCAGAGTTCAGAG 58.454 41.667 0.00 0.00 0.00 3.35
2333 3853 5.632118 TGCCTGGTAAACCTACACATTAAA 58.368 37.500 0.02 0.00 36.82 1.52
2336 3856 7.554835 TGCCTGGTAAACCTACACATTAAATAG 59.445 37.037 0.02 0.00 36.82 1.73
2343 3871 7.838771 AACCTACACATTAAATAGAACGTCC 57.161 36.000 0.00 0.00 0.00 4.79
2345 3873 7.039882 ACCTACACATTAAATAGAACGTCCTG 58.960 38.462 0.00 0.00 0.00 3.86
2351 3879 6.309737 ACATTAAATAGAACGTCCTGTCGAAC 59.690 38.462 0.00 0.00 34.70 3.95
2367 3895 6.343716 TGTCGAACTAACATTGTTACCCTA 57.656 37.500 5.14 0.00 0.00 3.53
2388 3916 2.880890 AGTTCTTGTTTGCCTAGCACTG 59.119 45.455 0.00 0.00 38.71 3.66
2389 3917 1.896220 TCTTGTTTGCCTAGCACTGG 58.104 50.000 0.00 0.00 38.71 4.00
2427 3955 7.220030 ACATGTATTACTTCCATGAGGCTAAG 58.780 38.462 0.00 0.00 38.56 2.18
2439 3967 7.723324 TCCATGAGGCTAAGTTATACTGTAAC 58.277 38.462 0.00 0.00 33.74 2.50
2441 3969 6.140303 TGAGGCTAAGTTATACTGTAACCG 57.860 41.667 0.00 0.00 0.00 4.44
2508 4040 2.794103 AGTGCATATTGTCAACCTGCA 58.206 42.857 16.14 16.14 40.29 4.41
2532 4064 7.255139 GCAAGTGTACTAAAAGGTTCAATCAGT 60.255 37.037 0.00 0.00 0.00 3.41
2542 4074 4.899502 AGGTTCAATCAGTCTGGTTACTG 58.100 43.478 0.00 0.00 46.78 2.74
2543 4075 3.437049 GGTTCAATCAGTCTGGTTACTGC 59.563 47.826 0.00 0.00 45.34 4.40
2544 4076 3.334583 TCAATCAGTCTGGTTACTGCC 57.665 47.619 0.00 0.00 45.34 4.85
2545 4077 2.906389 TCAATCAGTCTGGTTACTGCCT 59.094 45.455 0.00 0.00 45.34 4.75
2546 4078 3.327757 TCAATCAGTCTGGTTACTGCCTT 59.672 43.478 0.00 0.00 45.34 4.35
2547 4079 4.530553 TCAATCAGTCTGGTTACTGCCTTA 59.469 41.667 0.00 0.00 45.34 2.69
2548 4080 3.955650 TCAGTCTGGTTACTGCCTTAC 57.044 47.619 0.00 0.00 45.34 2.34
2549 4081 3.507411 TCAGTCTGGTTACTGCCTTACT 58.493 45.455 0.00 0.00 45.34 2.24
2550 4082 3.258372 TCAGTCTGGTTACTGCCTTACTG 59.742 47.826 0.00 0.00 45.34 2.74
2558 4090 4.081309 GGTTACTGCCTTACTGGTGTGATA 60.081 45.833 0.00 0.00 38.35 2.15
2567 4099 6.407074 GCCTTACTGGTGTGATATCTAGTTGT 60.407 42.308 3.98 0.00 38.35 3.32
2574 4106 9.823647 CTGGTGTGATATCTAGTTGTCTTTATT 57.176 33.333 3.98 0.00 0.00 1.40
2596 4222 9.859427 TTATTCATTCAGTATTTTGGCAAAGAG 57.141 29.630 13.04 3.26 0.00 2.85
2614 4240 4.891992 AGAGCTACCTTTGAGCAAGTTA 57.108 40.909 0.00 0.00 42.69 2.24
2618 4244 6.717084 AGAGCTACCTTTGAGCAAGTTATTTT 59.283 34.615 0.00 0.00 42.69 1.82
2619 4245 7.883311 AGAGCTACCTTTGAGCAAGTTATTTTA 59.117 33.333 0.00 0.00 42.69 1.52
2622 4248 9.639601 GCTACCTTTGAGCAAGTTATTTTATTT 57.360 29.630 0.00 0.00 39.84 1.40
2625 4251 9.620660 ACCTTTGAGCAAGTTATTTTATTTACG 57.379 29.630 0.00 0.00 0.00 3.18
2626 4252 9.620660 CCTTTGAGCAAGTTATTTTATTTACGT 57.379 29.630 0.00 0.00 0.00 3.57
2630 4256 9.953697 TGAGCAAGTTATTTTATTTACGTTTGT 57.046 25.926 0.00 0.00 0.00 2.83
2644 4270 8.918961 ATTTACGTTTGTTTCTTGTGAATTCA 57.081 26.923 3.38 3.38 31.56 2.57
2645 4271 7.962934 TTACGTTTGTTTCTTGTGAATTCAG 57.037 32.000 8.80 0.00 31.56 3.02
2647 4273 7.079182 ACGTTTGTTTCTTGTGAATTCAGTA 57.921 32.000 8.80 0.00 31.56 2.74
2648 4274 6.964934 ACGTTTGTTTCTTGTGAATTCAGTAC 59.035 34.615 8.80 0.00 31.56 2.73
2649 4275 6.964370 CGTTTGTTTCTTGTGAATTCAGTACA 59.036 34.615 8.80 0.24 31.56 2.90
2650 4276 7.044966 CGTTTGTTTCTTGTGAATTCAGTACAC 60.045 37.037 8.80 0.00 35.45 2.90
2651 4277 7.624360 TTGTTTCTTGTGAATTCAGTACACT 57.376 32.000 8.80 0.00 35.83 3.55
2652 4278 8.725405 TTGTTTCTTGTGAATTCAGTACACTA 57.275 30.769 8.80 0.00 35.83 2.74
2653 4279 8.902540 TGTTTCTTGTGAATTCAGTACACTAT 57.097 30.769 8.80 0.00 35.83 2.12
2655 4281 9.599322 GTTTCTTGTGAATTCAGTACACTATTG 57.401 33.333 8.80 0.00 35.83 1.90
2656 4282 9.554395 TTTCTTGTGAATTCAGTACACTATTGA 57.446 29.630 8.80 0.00 35.83 2.57
2657 4283 9.725019 TTCTTGTGAATTCAGTACACTATTGAT 57.275 29.630 8.80 0.00 35.83 2.57
2658 4284 9.371136 TCTTGTGAATTCAGTACACTATTGATC 57.629 33.333 8.80 0.00 35.83 2.92
2660 4286 9.725019 TTGTGAATTCAGTACACTATTGATCTT 57.275 29.630 8.80 0.00 35.83 2.40
2661 4287 9.725019 TGTGAATTCAGTACACTATTGATCTTT 57.275 29.630 8.80 0.00 35.83 2.52
2668 4294 9.431887 TCAGTACACTATTGATCTTTTAACCAC 57.568 33.333 0.00 0.00 0.00 4.16
2669 4295 9.214957 CAGTACACTATTGATCTTTTAACCACA 57.785 33.333 0.00 0.00 0.00 4.17
2671 4297 9.431887 GTACACTATTGATCTTTTAACCACAGA 57.568 33.333 0.00 0.00 0.00 3.41
2673 4299 8.375506 ACACTATTGATCTTTTAACCACAGAGA 58.624 33.333 0.00 0.00 0.00 3.10
2674 4300 9.219603 CACTATTGATCTTTTAACCACAGAGAA 57.780 33.333 0.00 0.00 0.00 2.87
2675 4301 9.793259 ACTATTGATCTTTTAACCACAGAGAAA 57.207 29.630 0.00 0.00 0.00 2.52
2680 4306 6.877611 TCTTTTAACCACAGAGAAATCACC 57.122 37.500 0.00 0.00 0.00 4.02
2681 4307 6.601332 TCTTTTAACCACAGAGAAATCACCT 58.399 36.000 0.00 0.00 0.00 4.00
2683 4309 8.215050 TCTTTTAACCACAGAGAAATCACCTTA 58.785 33.333 0.00 0.00 0.00 2.69
2684 4310 8.754991 TTTTAACCACAGAGAAATCACCTTAA 57.245 30.769 0.00 0.00 0.00 1.85
2687 4313 7.923414 AACCACAGAGAAATCACCTTAATAC 57.077 36.000 0.00 0.00 0.00 1.89
2688 4314 6.415573 ACCACAGAGAAATCACCTTAATACC 58.584 40.000 0.00 0.00 0.00 2.73
2689 4315 6.012858 ACCACAGAGAAATCACCTTAATACCA 60.013 38.462 0.00 0.00 0.00 3.25
2690 4316 6.884295 CCACAGAGAAATCACCTTAATACCAA 59.116 38.462 0.00 0.00 0.00 3.67
2691 4317 7.393234 CCACAGAGAAATCACCTTAATACCAAA 59.607 37.037 0.00 0.00 0.00 3.28
2692 4318 8.792633 CACAGAGAAATCACCTTAATACCAAAA 58.207 33.333 0.00 0.00 0.00 2.44
2693 4319 9.362151 ACAGAGAAATCACCTTAATACCAAAAA 57.638 29.630 0.00 0.00 0.00 1.94
2720 4346 9.709495 TGAAATAGAATTGAAACCTTTTGATGG 57.291 29.630 0.00 0.00 0.00 3.51
2785 4630 2.451490 TCTGTTCTCAGAGGCAGTAGG 58.549 52.381 17.06 0.68 44.58 3.18
2786 4631 2.175202 CTGTTCTCAGAGGCAGTAGGT 58.825 52.381 12.20 0.00 43.76 3.08
2788 4633 5.778398 CTGTTCTCAGAGGCAGTAGGTGC 62.778 56.522 12.20 0.00 46.76 5.01
2798 4643 1.888215 CAGTAGGTGCATATGGGCAG 58.112 55.000 4.56 0.00 45.96 4.85
2799 4644 1.141657 CAGTAGGTGCATATGGGCAGT 59.858 52.381 4.56 0.00 45.96 4.40
2800 4645 2.368548 CAGTAGGTGCATATGGGCAGTA 59.631 50.000 4.56 0.00 45.96 2.74
2808 4653 2.037772 GCATATGGGCAGTAGCAGTAGT 59.962 50.000 4.56 0.00 44.61 2.73
2824 4669 6.068670 AGCAGTAGTTTTACCTTCAAACCAT 58.931 36.000 0.00 0.00 35.10 3.55
2831 4676 4.782019 TTACCTTCAAACCATGCATGTC 57.218 40.909 24.58 0.00 0.00 3.06
2835 4680 3.581755 CTTCAAACCATGCATGTCCTTG 58.418 45.455 24.58 21.39 0.00 3.61
2839 4684 0.330604 ACCATGCATGTCCTTGCTCT 59.669 50.000 24.58 0.00 43.18 4.09
2840 4685 0.738975 CCATGCATGTCCTTGCTCTG 59.261 55.000 24.58 2.03 43.18 3.35
2848 4694 3.063510 TGTCCTTGCTCTGAGAATTGG 57.936 47.619 9.28 3.93 0.00 3.16
2856 4702 3.197265 GCTCTGAGAATTGGCTCTTCTC 58.803 50.000 9.28 17.35 45.75 2.87
2867 4713 0.530288 GCTCTTCTCTCGGCTGAACT 59.470 55.000 0.00 0.00 0.00 3.01
2872 4718 5.450688 GCTCTTCTCTCGGCTGAACTATTTA 60.451 44.000 0.00 0.00 0.00 1.40
2877 4723 4.621991 TCTCGGCTGAACTATTTATCTGC 58.378 43.478 0.00 0.00 39.10 4.26
2962 4819 5.324409 TGGATTTTTAGGTCAGAGCAATGT 58.676 37.500 1.66 0.00 0.00 2.71
2986 4846 7.764443 TGTCTGATAAACCTACAGATTAAGCAC 59.236 37.037 0.00 0.00 41.57 4.40
2998 4858 7.458409 ACAGATTAAGCACAATGTCATTTCT 57.542 32.000 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.095847 TTAGGCACGGCGCGTTTAG 61.096 57.895 6.90 0.00 43.84 1.85
10 11 2.048409 TTAGGCACGGCGCGTTTA 60.048 55.556 6.90 0.00 43.84 2.01
11 12 3.719144 GTTAGGCACGGCGCGTTT 61.719 61.111 6.90 0.00 43.84 3.60
12 13 4.973055 TGTTAGGCACGGCGCGTT 62.973 61.111 6.90 0.00 43.84 4.84
23 24 3.475774 GTCGTGCCGCGTGTTAGG 61.476 66.667 4.92 0.00 42.13 2.69
24 25 2.716828 CTGTCGTGCCGCGTGTTAG 61.717 63.158 4.92 0.00 42.13 2.34
25 26 2.731721 CTGTCGTGCCGCGTGTTA 60.732 61.111 4.92 0.00 42.13 2.41
46 47 1.451028 CTCTAGGCCCAAGCACAGC 60.451 63.158 0.00 0.00 42.56 4.40
47 48 1.222936 CCTCTAGGCCCAAGCACAG 59.777 63.158 0.00 0.00 42.56 3.66
48 49 3.403624 CCTCTAGGCCCAAGCACA 58.596 61.111 0.00 0.00 42.56 4.57
58 59 1.684386 CTGTCTGCCCAGCCTCTAGG 61.684 65.000 0.00 0.00 38.53 3.02
59 60 1.684386 CCTGTCTGCCCAGCCTCTAG 61.684 65.000 0.00 0.00 0.00 2.43
60 61 1.687146 CCTGTCTGCCCAGCCTCTA 60.687 63.158 0.00 0.00 0.00 2.43
61 62 3.007920 CCTGTCTGCCCAGCCTCT 61.008 66.667 0.00 0.00 0.00 3.69
62 63 3.005539 TCCTGTCTGCCCAGCCTC 61.006 66.667 0.00 0.00 0.00 4.70
63 64 3.325753 GTCCTGTCTGCCCAGCCT 61.326 66.667 0.00 0.00 0.00 4.58
64 65 4.767255 CGTCCTGTCTGCCCAGCC 62.767 72.222 0.00 0.00 0.00 4.85
65 66 3.695606 TCGTCCTGTCTGCCCAGC 61.696 66.667 0.00 0.00 0.00 4.85
66 67 1.892819 ATGTCGTCCTGTCTGCCCAG 61.893 60.000 0.00 0.00 0.00 4.45
67 68 1.913262 ATGTCGTCCTGTCTGCCCA 60.913 57.895 0.00 0.00 0.00 5.36
68 69 1.448540 CATGTCGTCCTGTCTGCCC 60.449 63.158 0.00 0.00 0.00 5.36
69 70 0.737715 GTCATGTCGTCCTGTCTGCC 60.738 60.000 0.00 0.00 0.00 4.85
70 71 0.038251 TGTCATGTCGTCCTGTCTGC 60.038 55.000 0.00 0.00 0.00 4.26
71 72 2.265683 CATGTCATGTCGTCCTGTCTG 58.734 52.381 4.53 0.00 0.00 3.51
72 73 1.205655 CCATGTCATGTCGTCCTGTCT 59.794 52.381 11.84 0.00 0.00 3.41
73 74 1.645034 CCATGTCATGTCGTCCTGTC 58.355 55.000 11.84 0.00 0.00 3.51
74 75 0.391661 GCCATGTCATGTCGTCCTGT 60.392 55.000 11.84 0.00 0.00 4.00
75 76 1.091771 GGCCATGTCATGTCGTCCTG 61.092 60.000 11.84 0.00 0.00 3.86
76 77 1.221840 GGCCATGTCATGTCGTCCT 59.778 57.895 11.84 0.00 0.00 3.85
77 78 1.091771 CAGGCCATGTCATGTCGTCC 61.092 60.000 5.01 7.18 0.00 4.79
78 79 0.391661 ACAGGCCATGTCATGTCGTC 60.392 55.000 5.01 0.00 37.75 4.20
79 80 0.036732 AACAGGCCATGTCATGTCGT 59.963 50.000 5.01 0.00 43.00 4.34
80 81 1.167851 AAACAGGCCATGTCATGTCG 58.832 50.000 5.01 0.00 43.00 4.35
81 82 3.947196 TGATAAACAGGCCATGTCATGTC 59.053 43.478 5.01 7.91 43.00 3.06
82 83 3.966979 TGATAAACAGGCCATGTCATGT 58.033 40.909 5.01 0.00 43.00 3.21
83 84 4.987408 TTGATAAACAGGCCATGTCATG 57.013 40.909 5.01 5.79 43.00 3.07
84 85 5.018809 AGTTTGATAAACAGGCCATGTCAT 58.981 37.500 5.01 4.03 43.00 3.06
85 86 4.218200 CAGTTTGATAAACAGGCCATGTCA 59.782 41.667 5.01 0.00 43.00 3.58
86 87 4.380867 CCAGTTTGATAAACAGGCCATGTC 60.381 45.833 5.01 0.00 43.00 3.06
87 88 3.511146 CCAGTTTGATAAACAGGCCATGT 59.489 43.478 5.01 3.39 46.97 3.21
88 89 4.114058 CCAGTTTGATAAACAGGCCATG 57.886 45.455 5.01 2.64 43.79 3.66
94 95 1.135402 GGGCGCCAGTTTGATAAACAG 60.135 52.381 30.85 0.00 43.79 3.16
95 96 0.885196 GGGCGCCAGTTTGATAAACA 59.115 50.000 30.85 0.00 43.79 2.83
96 97 0.179174 CGGGCGCCAGTTTGATAAAC 60.179 55.000 30.85 4.63 41.69 2.01
97 98 1.928706 GCGGGCGCCAGTTTGATAAA 61.929 55.000 30.85 0.00 34.56 1.40
98 99 2.403378 GCGGGCGCCAGTTTGATAA 61.403 57.895 30.85 0.00 34.56 1.75
99 100 2.822255 GCGGGCGCCAGTTTGATA 60.822 61.111 30.85 0.00 34.56 2.15
100 101 4.722700 AGCGGGCGCCAGTTTGAT 62.723 61.111 30.85 7.86 43.17 2.57
133 134 2.525629 TGAGTGTTCCTGGGCCGA 60.526 61.111 0.00 0.00 0.00 5.54
213 215 2.159517 GGCACTGCGGTCTTTAATTGAG 60.160 50.000 0.00 0.00 0.00 3.02
238 241 6.253657 ACTACGTCATAGTAGCACGAGTGC 62.254 50.000 19.45 19.45 45.50 4.40
245 248 6.635030 ATCAATCACTACGTCATAGTAGCA 57.365 37.500 0.00 0.00 45.87 3.49
256 259 3.544682 TCGCGTTGTTATCAATCACTACG 59.455 43.478 5.77 6.85 42.58 3.51
257 260 5.444586 TTCGCGTTGTTATCAATCACTAC 57.555 39.130 5.77 0.00 35.92 2.73
294 297 5.118990 TGTATGTGCAAGAAATAGGAGAGC 58.881 41.667 0.00 0.00 0.00 4.09
296 299 7.828717 TGAAATGTATGTGCAAGAAATAGGAGA 59.171 33.333 0.00 0.00 0.00 3.71
344 347 9.627395 TTCTTTACTTTTGTTCGATTTGTTTCA 57.373 25.926 0.00 0.00 0.00 2.69
603 663 7.997803 TGACCTTTTCCCAAATTTGATGAATTT 59.002 29.630 19.86 6.54 46.29 1.82
604 664 7.516452 TGACCTTTTCCCAAATTTGATGAATT 58.484 30.769 19.86 6.83 39.63 2.17
605 665 7.077050 TGACCTTTTCCCAAATTTGATGAAT 57.923 32.000 19.86 6.81 0.00 2.57
606 666 6.491714 TGACCTTTTCCCAAATTTGATGAA 57.508 33.333 19.86 17.00 0.00 2.57
607 667 6.572119 CGATGACCTTTTCCCAAATTTGATGA 60.572 38.462 19.86 12.26 0.00 2.92
608 668 5.577945 CGATGACCTTTTCCCAAATTTGATG 59.422 40.000 19.86 10.15 0.00 3.07
609 669 5.480073 TCGATGACCTTTTCCCAAATTTGAT 59.520 36.000 19.86 0.69 0.00 2.57
610 670 4.830046 TCGATGACCTTTTCCCAAATTTGA 59.170 37.500 19.86 0.00 0.00 2.69
611 671 5.132897 TCGATGACCTTTTCCCAAATTTG 57.867 39.130 11.40 11.40 0.00 2.32
612 672 7.660030 ATATCGATGACCTTTTCCCAAATTT 57.340 32.000 8.54 0.00 0.00 1.82
613 673 7.660030 AATATCGATGACCTTTTCCCAAATT 57.340 32.000 8.54 0.00 0.00 1.82
614 674 8.760980 TTAATATCGATGACCTTTTCCCAAAT 57.239 30.769 8.54 0.00 0.00 2.32
615 675 8.582657 TTTAATATCGATGACCTTTTCCCAAA 57.417 30.769 8.54 0.00 0.00 3.28
616 676 8.582657 TTTTAATATCGATGACCTTTTCCCAA 57.417 30.769 8.54 0.00 0.00 4.12
617 677 8.582657 TTTTTAATATCGATGACCTTTTCCCA 57.417 30.769 8.54 0.00 0.00 4.37
618 678 8.683615 ACTTTTTAATATCGATGACCTTTTCCC 58.316 33.333 8.54 0.00 0.00 3.97
706 767 9.781633 TCAACTTGATTTTCCAAATTGATGATT 57.218 25.926 0.00 0.00 37.36 2.57
707 768 9.953565 ATCAACTTGATTTTCCAAATTGATGAT 57.046 25.926 11.02 0.00 45.43 2.45
835 920 9.822727 TCCCATTCTTTTATTCCTTCTACTTTT 57.177 29.630 0.00 0.00 0.00 2.27
836 921 9.822727 TTCCCATTCTTTTATTCCTTCTACTTT 57.177 29.630 0.00 0.00 0.00 2.66
837 922 9.822727 TTTCCCATTCTTTTATTCCTTCTACTT 57.177 29.630 0.00 0.00 0.00 2.24
838 923 9.467796 CTTTCCCATTCTTTTATTCCTTCTACT 57.532 33.333 0.00 0.00 0.00 2.57
839 924 9.462606 TCTTTCCCATTCTTTTATTCCTTCTAC 57.537 33.333 0.00 0.00 0.00 2.59
855 940 9.699410 TGTCTGATAATGTTTATCTTTCCCATT 57.301 29.630 8.32 0.00 0.00 3.16
856 941 9.699410 TTGTCTGATAATGTTTATCTTTCCCAT 57.301 29.630 8.32 0.00 0.00 4.00
857 942 9.177608 CTTGTCTGATAATGTTTATCTTTCCCA 57.822 33.333 8.32 0.00 0.00 4.37
858 943 8.624776 CCTTGTCTGATAATGTTTATCTTTCCC 58.375 37.037 8.32 0.00 0.00 3.97
859 944 9.178758 ACCTTGTCTGATAATGTTTATCTTTCC 57.821 33.333 8.32 0.00 0.00 3.13
862 947 9.838339 CCTACCTTGTCTGATAATGTTTATCTT 57.162 33.333 8.32 0.00 0.00 2.40
863 948 9.213777 TCCTACCTTGTCTGATAATGTTTATCT 57.786 33.333 8.32 0.00 0.00 1.98
867 952 9.213777 TCTATCCTACCTTGTCTGATAATGTTT 57.786 33.333 0.99 0.00 0.00 2.83
868 953 8.783660 TCTATCCTACCTTGTCTGATAATGTT 57.216 34.615 0.99 0.00 0.00 2.71
869 954 7.453126 CCTCTATCCTACCTTGTCTGATAATGT 59.547 40.741 1.33 1.33 0.00 2.71
870 955 7.578571 GCCTCTATCCTACCTTGTCTGATAATG 60.579 44.444 0.00 0.00 0.00 1.90
871 956 6.439058 GCCTCTATCCTACCTTGTCTGATAAT 59.561 42.308 0.00 0.00 0.00 1.28
872 957 5.775701 GCCTCTATCCTACCTTGTCTGATAA 59.224 44.000 0.00 0.00 0.00 1.75
873 958 5.326069 GCCTCTATCCTACCTTGTCTGATA 58.674 45.833 0.00 0.00 0.00 2.15
874 959 4.156477 GCCTCTATCCTACCTTGTCTGAT 58.844 47.826 0.00 0.00 0.00 2.90
875 960 3.567397 GCCTCTATCCTACCTTGTCTGA 58.433 50.000 0.00 0.00 0.00 3.27
876 961 2.630580 GGCCTCTATCCTACCTTGTCTG 59.369 54.545 0.00 0.00 0.00 3.51
877 962 2.426561 GGGCCTCTATCCTACCTTGTCT 60.427 54.545 0.84 0.00 0.00 3.41
878 963 1.972075 GGGCCTCTATCCTACCTTGTC 59.028 57.143 0.84 0.00 0.00 3.18
879 964 1.294068 TGGGCCTCTATCCTACCTTGT 59.706 52.381 4.53 0.00 0.00 3.16
880 965 1.974236 CTGGGCCTCTATCCTACCTTG 59.026 57.143 4.53 0.00 0.00 3.61
881 966 1.132689 CCTGGGCCTCTATCCTACCTT 60.133 57.143 4.53 0.00 0.00 3.50
882 967 0.489567 CCTGGGCCTCTATCCTACCT 59.510 60.000 4.53 0.00 0.00 3.08
883 968 0.191314 ACCTGGGCCTCTATCCTACC 59.809 60.000 4.53 0.00 0.00 3.18
884 969 2.527497 GTACCTGGGCCTCTATCCTAC 58.473 57.143 4.53 0.00 0.00 3.18
885 970 1.432024 GGTACCTGGGCCTCTATCCTA 59.568 57.143 4.06 0.00 0.00 2.94
886 971 0.191314 GGTACCTGGGCCTCTATCCT 59.809 60.000 4.06 0.00 0.00 3.24
887 972 2.761324 GGTACCTGGGCCTCTATCC 58.239 63.158 4.06 0.00 0.00 2.59
924 1009 1.134521 TCGATCTGGATGGGAAAACCG 60.135 52.381 0.00 0.00 44.64 4.44
935 1025 5.478679 GGAGAGAGGAAATTATCGATCTGGA 59.521 44.000 0.00 0.00 0.00 3.86
972 1066 2.348998 CACAGGGTCAGGTCAGGC 59.651 66.667 0.00 0.00 0.00 4.85
975 1069 3.625897 CGGCACAGGGTCAGGTCA 61.626 66.667 0.00 0.00 0.00 4.02
980 1074 3.936203 GACACCGGCACAGGGTCA 61.936 66.667 0.00 0.00 34.97 4.02
995 1089 2.764128 TCTCCGCCTCCATGGGAC 60.764 66.667 13.02 0.34 36.00 4.46
1013 1116 2.044252 TCTCGAAGGTCCCCTCCG 60.044 66.667 0.00 0.00 30.89 4.63
1119 2486 4.458829 ACGGATCTGGCGGGGAGA 62.459 66.667 6.47 0.00 0.00 3.71
1229 2602 1.519455 CGAGCGTTCCTGATGGTCC 60.519 63.158 0.00 0.00 38.31 4.46
1281 2675 2.106683 GCAAGGGTCGAACGGGATG 61.107 63.158 0.00 0.00 0.00 3.51
1302 2705 3.644265 TGTCCTTGTACTTGTTAGGCTGA 59.356 43.478 0.00 0.00 0.00 4.26
1371 2774 1.851304 GGAAATCATCCCTGTTGGCA 58.149 50.000 0.00 0.00 43.00 4.92
1372 2775 0.740737 CGGAAATCATCCCTGTTGGC 59.259 55.000 0.00 0.00 46.39 4.52
1393 2829 1.580942 CGGGATTGCACACCACAAG 59.419 57.895 10.01 0.00 0.00 3.16
1432 2868 1.462928 CCTGTGGCTTTGGGGGTAA 59.537 57.895 0.00 0.00 0.00 2.85
1463 2905 2.150397 GCCTATGGTACGGCTACTTG 57.850 55.000 2.55 0.00 42.98 3.16
1478 2920 0.179084 CGGATCGAAAGCCAAGCCTA 60.179 55.000 0.00 0.00 0.00 3.93
1503 2945 1.485066 AGAACGTGGAAATAGGGCGAT 59.515 47.619 0.00 0.00 0.00 4.58
1507 2949 5.447624 AAACAAAGAACGTGGAAATAGGG 57.552 39.130 0.00 0.00 0.00 3.53
1542 2984 3.674997 TCCTGTCATGTAAGTTTCCTGC 58.325 45.455 0.00 0.00 0.00 4.85
1639 3087 4.641094 AGAGACACATTTACTACTCCCGAG 59.359 45.833 0.00 0.00 0.00 4.63
1642 3090 5.652518 GACAGAGACACATTTACTACTCCC 58.347 45.833 0.00 0.00 0.00 4.30
1643 3091 5.333513 CGACAGAGACACATTTACTACTCC 58.666 45.833 0.00 0.00 0.00 3.85
1644 3092 5.333513 CCGACAGAGACACATTTACTACTC 58.666 45.833 0.00 0.00 0.00 2.59
1661 3109 0.870307 GTACAGCATACCGCCGACAG 60.870 60.000 0.00 0.00 44.04 3.51
1685 3139 1.452651 CGGATGTGCAGCTTCCCAT 60.453 57.895 12.44 1.35 37.96 4.00
1689 3143 3.869272 CCGCGGATGTGCAGCTTC 61.869 66.667 24.07 0.00 35.39 3.86
1702 3162 2.871080 CAGCACAAAATCGCCGCG 60.871 61.111 6.39 6.39 0.00 6.46
1710 3170 2.441164 ACGCCCACCAGCACAAAA 60.441 55.556 0.00 0.00 0.00 2.44
1725 3185 3.280938 TTTCCCCTCCATGCCCACG 62.281 63.158 0.00 0.00 0.00 4.94
1730 3190 0.967380 CCACACTTTCCCCTCCATGC 60.967 60.000 0.00 0.00 0.00 4.06
1757 3217 3.793888 GAGGGTACGGCAAGGGGG 61.794 72.222 0.00 0.00 0.00 5.40
1762 3222 0.322322 AACATTCGAGGGTACGGCAA 59.678 50.000 0.00 0.00 0.00 4.52
1778 3238 3.513912 AGACGATCCAGTCATACCAAACA 59.486 43.478 3.94 0.00 43.24 2.83
1779 3239 4.113354 GAGACGATCCAGTCATACCAAAC 58.887 47.826 3.94 0.00 43.24 2.93
1790 3250 0.460987 GCACCCTTGAGACGATCCAG 60.461 60.000 0.00 0.00 0.00 3.86
1857 3326 4.405358 AGGCACCAGATTTCTCTCTTAGAG 59.595 45.833 2.23 2.23 43.64 2.43
1891 3360 8.635765 TGCTTCAAGACCAATTCTTTACTATT 57.364 30.769 0.00 0.00 42.37 1.73
1950 3425 5.290335 TGAATCCCAACCACCCTATAACTA 58.710 41.667 0.00 0.00 0.00 2.24
1992 3467 9.806203 GTATCATCTTCATATGAGATCAGGAAG 57.194 37.037 5.39 12.12 39.18 3.46
2021 3496 1.269102 GCAGCATGTCGTACGATACCT 60.269 52.381 22.57 15.15 39.31 3.08
2039 3521 2.254546 ACGGTCAACTTTCTGATGCA 57.745 45.000 0.00 0.00 0.00 3.96
2061 3543 8.045507 TCTGCATCATCTTTCTCAAGATTAACT 58.954 33.333 0.00 0.00 46.07 2.24
2062 3544 8.121708 GTCTGCATCATCTTTCTCAAGATTAAC 58.878 37.037 0.00 0.00 46.07 2.01
2080 3568 3.891049 AGGGTAGAAATTGGTCTGCATC 58.109 45.455 0.00 0.00 32.35 3.91
2086 3574 6.002653 AGGAACATAGGGTAGAAATTGGTC 57.997 41.667 0.00 0.00 0.00 4.02
2150 3650 4.268884 GCAAGCATGGTTTGAACGTTAAAA 59.731 37.500 7.57 6.73 0.00 1.52
2154 3654 1.851658 GCAAGCATGGTTTGAACGTT 58.148 45.000 7.57 0.00 0.00 3.99
2173 3674 1.432270 GCCAATTCTCGGAGGAAGCG 61.432 60.000 4.96 0.00 0.00 4.68
2197 3699 2.202566 GACAGATAGTTAAGCCGGCAC 58.797 52.381 31.54 18.85 0.00 5.01
2206 3708 3.762288 AGAAGCACACGGACAGATAGTTA 59.238 43.478 0.00 0.00 0.00 2.24
2230 3732 1.001706 CCGGCATGATTGAAGCAGATG 60.002 52.381 0.00 0.00 0.00 2.90
2247 3749 1.247567 AGCACCAGAAAATTCACCGG 58.752 50.000 0.00 0.00 0.00 5.28
2250 3752 5.438761 AGTGTAAGCACCAGAAAATTCAC 57.561 39.130 0.00 0.00 46.35 3.18
2252 3754 4.762251 AGGAGTGTAAGCACCAGAAAATTC 59.238 41.667 0.00 0.00 46.35 2.17
2258 3761 0.321671 GCAGGAGTGTAAGCACCAGA 59.678 55.000 0.00 0.00 46.35 3.86
2300 3819 2.819608 GTTTACCAGGCATTGCTCTGAA 59.180 45.455 21.47 10.83 31.74 3.02
2301 3820 2.436417 GTTTACCAGGCATTGCTCTGA 58.564 47.619 21.47 6.58 31.74 3.27
2302 3821 1.474077 GGTTTACCAGGCATTGCTCTG 59.526 52.381 15.92 15.92 35.64 3.35
2303 3822 1.355720 AGGTTTACCAGGCATTGCTCT 59.644 47.619 8.82 1.19 38.89 4.09
2304 3823 1.839424 AGGTTTACCAGGCATTGCTC 58.161 50.000 8.82 0.00 38.89 4.26
2305 3824 2.041081 TGTAGGTTTACCAGGCATTGCT 59.959 45.455 8.82 0.00 38.89 3.91
2306 3825 2.163613 GTGTAGGTTTACCAGGCATTGC 59.836 50.000 0.00 0.00 38.89 3.56
2333 3853 4.456911 TGTTAGTTCGACAGGACGTTCTAT 59.543 41.667 0.00 0.00 34.70 1.98
2336 3856 3.004024 TGTTAGTTCGACAGGACGTTC 57.996 47.619 0.00 0.00 34.70 3.95
2339 3859 3.314553 ACAATGTTAGTTCGACAGGACG 58.685 45.455 0.00 0.00 0.00 4.79
2343 3871 5.235516 AGGGTAACAATGTTAGTTCGACAG 58.764 41.667 6.03 0.00 39.74 3.51
2345 3873 6.393171 ACTAGGGTAACAATGTTAGTTCGAC 58.607 40.000 6.03 0.00 39.74 4.20
2351 3879 8.617290 AACAAGAACTAGGGTAACAATGTTAG 57.383 34.615 6.03 0.00 39.74 2.34
2367 3895 2.880890 CAGTGCTAGGCAAACAAGAACT 59.119 45.455 0.00 0.00 41.47 3.01
2388 3916 1.609208 ACATGTCCAGAACAACTGCC 58.391 50.000 0.00 0.00 44.52 4.85
2389 3917 5.643777 AGTAATACATGTCCAGAACAACTGC 59.356 40.000 0.00 0.00 44.52 4.40
2427 3955 4.397481 AGAAGGCCGGTTACAGTATAAC 57.603 45.455 1.90 0.00 0.00 1.89
2433 3961 1.439679 GACAAGAAGGCCGGTTACAG 58.560 55.000 1.90 0.00 0.00 2.74
2481 4009 7.412853 CAGGTTGACAATATGCACTAAGATTC 58.587 38.462 0.00 0.00 0.00 2.52
2508 4040 8.211629 AGACTGATTGAACCTTTTAGTACACTT 58.788 33.333 0.00 0.00 0.00 3.16
2532 4064 2.301870 CACCAGTAAGGCAGTAACCAGA 59.698 50.000 0.00 0.00 43.14 3.86
2542 4074 5.793030 ACTAGATATCACACCAGTAAGGC 57.207 43.478 5.32 0.00 43.14 4.35
2543 4075 7.068839 AGACAACTAGATATCACACCAGTAAGG 59.931 40.741 5.32 0.00 45.67 2.69
2544 4076 8.001881 AGACAACTAGATATCACACCAGTAAG 57.998 38.462 5.32 0.61 0.00 2.34
2545 4077 7.956328 AGACAACTAGATATCACACCAGTAA 57.044 36.000 5.32 0.00 0.00 2.24
2546 4078 7.956328 AAGACAACTAGATATCACACCAGTA 57.044 36.000 5.32 0.00 0.00 2.74
2547 4079 6.859112 AAGACAACTAGATATCACACCAGT 57.141 37.500 5.32 0.00 0.00 4.00
2548 4080 9.823647 AATAAAGACAACTAGATATCACACCAG 57.176 33.333 5.32 0.00 0.00 4.00
2549 4081 9.817809 GAATAAAGACAACTAGATATCACACCA 57.182 33.333 5.32 0.00 0.00 4.17
2550 4082 9.817809 TGAATAAAGACAACTAGATATCACACC 57.182 33.333 5.32 0.00 0.00 4.16
2574 4106 5.477984 AGCTCTTTGCCAAAATACTGAATGA 59.522 36.000 0.00 0.00 44.23 2.57
2580 4112 4.923415 AGGTAGCTCTTTGCCAAAATACT 58.077 39.130 0.00 0.00 44.23 2.12
2595 4221 6.901081 AAAATAACTTGCTCAAAGGTAGCT 57.099 33.333 0.00 0.00 41.41 3.32
2596 4222 9.639601 AAATAAAATAACTTGCTCAAAGGTAGC 57.360 29.630 0.00 0.00 41.41 3.58
2619 4245 8.918961 TGAATTCACAAGAAACAAACGTAAAT 57.081 26.923 3.38 0.00 37.29 1.40
2622 4248 7.079182 ACTGAATTCACAAGAAACAAACGTA 57.921 32.000 3.38 0.00 37.29 3.57
2623 4249 5.949735 ACTGAATTCACAAGAAACAAACGT 58.050 33.333 3.38 0.00 37.29 3.99
2624 4250 6.964370 TGTACTGAATTCACAAGAAACAAACG 59.036 34.615 3.38 0.00 37.29 3.60
2625 4251 7.968405 AGTGTACTGAATTCACAAGAAACAAAC 59.032 33.333 3.38 0.00 37.29 2.93
2626 4252 8.050778 AGTGTACTGAATTCACAAGAAACAAA 57.949 30.769 3.38 0.00 37.29 2.83
2628 4254 8.902540 ATAGTGTACTGAATTCACAAGAAACA 57.097 30.769 3.38 3.58 37.29 2.83
2629 4255 9.599322 CAATAGTGTACTGAATTCACAAGAAAC 57.401 33.333 3.38 0.00 37.29 2.78
2630 4256 9.554395 TCAATAGTGTACTGAATTCACAAGAAA 57.446 29.630 3.38 0.00 37.29 2.52
2631 4257 9.725019 ATCAATAGTGTACTGAATTCACAAGAA 57.275 29.630 3.38 0.00 38.31 2.52
2633 4259 9.376075 AGATCAATAGTGTACTGAATTCACAAG 57.624 33.333 3.38 0.00 34.94 3.16
2634 4260 9.725019 AAGATCAATAGTGTACTGAATTCACAA 57.275 29.630 3.38 0.00 34.94 3.33
2642 4268 9.431887 GTGGTTAAAAGATCAATAGTGTACTGA 57.568 33.333 0.00 0.00 0.00 3.41
2643 4269 9.214957 TGTGGTTAAAAGATCAATAGTGTACTG 57.785 33.333 0.00 0.00 0.00 2.74
2644 4270 9.436957 CTGTGGTTAAAAGATCAATAGTGTACT 57.563 33.333 0.00 0.00 0.00 2.73
2645 4271 9.431887 TCTGTGGTTAAAAGATCAATAGTGTAC 57.568 33.333 0.00 0.00 0.00 2.90
2647 4273 8.375506 TCTCTGTGGTTAAAAGATCAATAGTGT 58.624 33.333 0.00 0.00 0.00 3.55
2648 4274 8.777865 TCTCTGTGGTTAAAAGATCAATAGTG 57.222 34.615 0.00 0.00 0.00 2.74
2649 4275 9.793259 TTTCTCTGTGGTTAAAAGATCAATAGT 57.207 29.630 0.00 0.00 0.00 2.12
2652 4278 9.300681 TGATTTCTCTGTGGTTAAAAGATCAAT 57.699 29.630 0.00 0.00 0.00 2.57
2653 4279 8.567948 GTGATTTCTCTGTGGTTAAAAGATCAA 58.432 33.333 0.00 0.00 0.00 2.57
2655 4281 7.391833 AGGTGATTTCTCTGTGGTTAAAAGATC 59.608 37.037 0.00 0.00 0.00 2.75
2656 4282 7.234355 AGGTGATTTCTCTGTGGTTAAAAGAT 58.766 34.615 0.00 0.00 0.00 2.40
2657 4283 6.601332 AGGTGATTTCTCTGTGGTTAAAAGA 58.399 36.000 0.00 0.00 0.00 2.52
2658 4284 6.884280 AGGTGATTTCTCTGTGGTTAAAAG 57.116 37.500 0.00 0.00 0.00 2.27
2660 4286 8.934023 ATTAAGGTGATTTCTCTGTGGTTAAA 57.066 30.769 0.00 0.00 0.00 1.52
2661 4287 9.444600 GTATTAAGGTGATTTCTCTGTGGTTAA 57.555 33.333 0.00 0.00 0.00 2.01
2663 4289 6.884836 GGTATTAAGGTGATTTCTCTGTGGTT 59.115 38.462 0.00 0.00 0.00 3.67
2666 4292 7.921786 TTGGTATTAAGGTGATTTCTCTGTG 57.078 36.000 0.00 0.00 0.00 3.66
2667 4293 8.934023 TTTTGGTATTAAGGTGATTTCTCTGT 57.066 30.769 0.00 0.00 0.00 3.41
2732 4358 2.747507 GAAACACACATGCACCCGGC 62.748 60.000 0.00 0.00 45.13 6.13
2733 4359 1.172180 AGAAACACACATGCACCCGG 61.172 55.000 0.00 0.00 0.00 5.73
2735 4361 1.539827 GGTAGAAACACACATGCACCC 59.460 52.381 0.00 0.00 0.00 4.61
2736 4362 2.504367 AGGTAGAAACACACATGCACC 58.496 47.619 0.00 0.00 0.00 5.01
2738 4364 5.312895 ACATAAGGTAGAAACACACATGCA 58.687 37.500 0.00 0.00 0.00 3.96
2739 4365 5.880054 ACATAAGGTAGAAACACACATGC 57.120 39.130 0.00 0.00 0.00 4.06
2741 4367 6.779860 AGGAACATAAGGTAGAAACACACAT 58.220 36.000 0.00 0.00 0.00 3.21
2742 4368 6.042781 AGAGGAACATAAGGTAGAAACACACA 59.957 38.462 0.00 0.00 0.00 3.72
2746 4372 6.681729 ACAGAGGAACATAAGGTAGAAACA 57.318 37.500 0.00 0.00 0.00 2.83
2781 4626 2.872038 GCTACTGCCCATATGCACCTAC 60.872 54.545 0.00 0.00 36.04 3.18
2785 4630 1.233019 CTGCTACTGCCCATATGCAC 58.767 55.000 0.00 0.00 36.04 4.57
2786 4631 0.839277 ACTGCTACTGCCCATATGCA 59.161 50.000 0.00 0.00 39.37 3.96
2788 4633 4.342862 AACTACTGCTACTGCCCATATG 57.657 45.455 0.00 0.00 38.71 1.78
2789 4634 5.373812 AAAACTACTGCTACTGCCCATAT 57.626 39.130 0.00 0.00 38.71 1.78
2790 4635 4.837093 AAAACTACTGCTACTGCCCATA 57.163 40.909 0.00 0.00 38.71 2.74
2791 4636 3.721087 AAAACTACTGCTACTGCCCAT 57.279 42.857 0.00 0.00 38.71 4.00
2792 4637 3.307199 GGTAAAACTACTGCTACTGCCCA 60.307 47.826 0.00 0.00 38.71 5.36
2794 4639 4.203654 AGGTAAAACTACTGCTACTGCC 57.796 45.455 0.00 0.00 38.71 4.85
2795 4640 5.235516 TGAAGGTAAAACTACTGCTACTGC 58.764 41.667 0.00 0.00 40.20 4.40
2796 4641 7.307811 GGTTTGAAGGTAAAACTACTGCTACTG 60.308 40.741 0.00 0.00 37.60 2.74
2797 4642 6.709397 GGTTTGAAGGTAAAACTACTGCTACT 59.291 38.462 0.00 0.00 37.60 2.57
2798 4643 6.484308 TGGTTTGAAGGTAAAACTACTGCTAC 59.516 38.462 0.00 0.00 37.60 3.58
2799 4644 6.593807 TGGTTTGAAGGTAAAACTACTGCTA 58.406 36.000 0.00 0.00 37.60 3.49
2800 4645 5.442391 TGGTTTGAAGGTAAAACTACTGCT 58.558 37.500 0.00 0.00 37.60 4.24
2808 4653 5.510520 GGACATGCATGGTTTGAAGGTAAAA 60.511 40.000 29.41 0.00 24.41 1.52
2831 4676 2.015587 GAGCCAATTCTCAGAGCAAGG 58.984 52.381 0.00 0.00 33.41 3.61
2835 4680 3.264998 AGAAGAGCCAATTCTCAGAGC 57.735 47.619 0.00 0.00 31.29 4.09
2848 4694 0.530288 AGTTCAGCCGAGAGAAGAGC 59.470 55.000 0.00 0.00 0.00 4.09
2856 4702 3.426859 CGCAGATAAATAGTTCAGCCGAG 59.573 47.826 0.00 0.00 0.00 4.63
2867 4713 9.459640 GTACATTCAGAAGTACGCAGATAAATA 57.540 33.333 6.98 0.00 32.28 1.40
2872 4718 5.584253 AGTACATTCAGAAGTACGCAGAT 57.416 39.130 13.08 0.10 43.98 2.90
2962 4819 7.847096 TGTGCTTAATCTGTAGGTTTATCAGA 58.153 34.615 0.00 0.00 41.43 3.27
2966 4825 8.807948 ACATTGTGCTTAATCTGTAGGTTTAT 57.192 30.769 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.