Multiple sequence alignment - TraesCS7A01G025500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G025500 chr7A 100.000 3239 0 0 1 3239 10093055 10089817 0.000000e+00 5982
1 TraesCS7A01G025500 chr7A 79.204 1659 267 44 1033 2676 10169953 10168358 0.000000e+00 1081
2 TraesCS7A01G025500 chr7A 89.539 803 72 9 1858 2656 10168213 10167419 0.000000e+00 1007
3 TraesCS7A01G025500 chr7A 79.526 1392 203 50 1463 2833 10157287 10155957 0.000000e+00 917
4 TraesCS7A01G025500 chr7A 89.560 546 47 3 2694 3238 10167418 10166882 0.000000e+00 684
5 TraesCS7A01G025500 chr7A 76.074 1350 253 38 1022 2350 9382013 9383313 9.800000e-180 640
6 TraesCS7A01G025500 chr7A 83.729 547 85 2 1792 2338 10106063 10105521 6.200000e-142 514
7 TraesCS7A01G025500 chr7A 76.452 620 82 39 1118 1714 10107596 10107018 8.850000e-71 278
8 TraesCS7A01G025500 chr7D 91.457 2388 143 35 860 3238 10963806 10961471 0.000000e+00 3223
9 TraesCS7A01G025500 chr7D 85.562 1406 134 40 1845 3239 10972505 10971158 0.000000e+00 1408
10 TraesCS7A01G025500 chr7D 83.665 1408 180 29 1083 2457 10910377 10908987 0.000000e+00 1280
11 TraesCS7A01G025500 chr7D 80.103 1553 248 36 1094 2632 10974178 10972673 0.000000e+00 1099
12 TraesCS7A01G025500 chr7D 78.545 1636 285 39 1019 2633 109144725 109143135 0.000000e+00 1016
13 TraesCS7A01G025500 chr7D 90.091 767 54 10 2480 3238 10903402 10902650 0.000000e+00 976
14 TraesCS7A01G025500 chr7D 92.508 654 36 2 1 654 214337799 214338439 0.000000e+00 924
15 TraesCS7A01G025500 chr7D 76.650 1803 314 60 1020 2792 8818857 8820582 0.000000e+00 898
16 TraesCS7A01G025500 chr7D 78.893 777 145 14 1051 1823 9354854 9355615 2.880000e-140 508
17 TraesCS7A01G025500 chr7D 98.438 64 1 0 779 842 10963862 10963799 2.640000e-21 113
18 TraesCS7A01G025500 chr4B 80.687 1398 232 26 1025 2408 654201948 654203321 0.000000e+00 1051
19 TraesCS7A01G025500 chr4D 80.211 1420 237 29 1009 2408 507352257 507350862 0.000000e+00 1026
20 TraesCS7A01G025500 chr7B 78.462 1639 279 43 1019 2632 68223655 68222066 0.000000e+00 1003
21 TraesCS7A01G025500 chr6D 93.884 654 27 2 1 654 417352808 417353448 0.000000e+00 974
22 TraesCS7A01G025500 chr1B 93.323 659 34 5 1 654 585940439 585941092 0.000000e+00 965
23 TraesCS7A01G025500 chr1A 92.216 668 38 4 1 654 534257118 534257785 0.000000e+00 933
24 TraesCS7A01G025500 chr5D 94.175 618 25 1 1 618 91865332 91865938 0.000000e+00 931
25 TraesCS7A01G025500 chr5D 95.407 479 22 0 176 654 435482274 435481796 0.000000e+00 763
26 TraesCS7A01G025500 chr5D 94.375 160 7 2 4 161 435482411 435482252 8.980000e-61 244
27 TraesCS7A01G025500 chr4A 77.358 1696 293 65 977 2630 728645495 728643849 0.000000e+00 920
28 TraesCS7A01G025500 chr4A 85.558 914 71 30 2334 3239 727412179 727413039 0.000000e+00 900
29 TraesCS7A01G025500 chr4A 79.308 1387 192 53 1881 3239 728357563 728356244 0.000000e+00 883
30 TraesCS7A01G025500 chr4A 76.905 1693 286 65 1022 2676 729157299 729158924 0.000000e+00 863
31 TraesCS7A01G025500 chr4A 91.006 656 34 7 1 655 539150591 539151222 0.000000e+00 861
32 TraesCS7A01G025500 chr4A 79.273 1293 210 35 981 2252 731097611 731098866 0.000000e+00 850
33 TraesCS7A01G025500 chr4A 77.052 1608 285 58 1100 2673 729819300 729820857 0.000000e+00 848
34 TraesCS7A01G025500 chr4A 79.444 1187 191 27 1468 2633 727711501 727712655 0.000000e+00 791
35 TraesCS7A01G025500 chr4A 77.368 1436 254 48 977 2381 729827432 729828827 0.000000e+00 785
36 TraesCS7A01G025500 chr4A 76.463 1555 275 54 1081 2608 730456111 730457601 0.000000e+00 760
37 TraesCS7A01G025500 chr4A 77.410 1328 251 30 1006 2306 730322745 730324050 0.000000e+00 745
38 TraesCS7A01G025500 chr4A 78.578 1153 203 24 1102 2243 729057783 729056664 0.000000e+00 721
39 TraesCS7A01G025500 chr4A 78.000 850 146 21 1406 2243 731061953 731062773 2.240000e-136 496
40 TraesCS7A01G025500 chr4A 77.437 749 128 23 1021 1762 729677748 729678462 3.010000e-110 409
41 TraesCS7A01G025500 chr4A 89.167 240 14 4 3000 3239 727413222 727413449 4.090000e-74 289
42 TraesCS7A01G025500 chr5B 92.320 638 44 2 21 654 542054645 542055281 0.000000e+00 902
43 TraesCS7A01G025500 chr3D 84.362 486 71 5 165 648 7091304 7090822 3.780000e-129 472
44 TraesCS7A01G025500 chr2B 89.354 263 17 5 1 263 448698632 448698883 1.450000e-83 320
45 TraesCS7A01G025500 chr6A 88.333 240 17 6 1 240 434802697 434802925 8.850000e-71 278


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G025500 chr7A 10089817 10093055 3238 True 5982.0 5982 100.0000 1 3239 1 chr7A.!!$R1 3238
1 TraesCS7A01G025500 chr7A 10166882 10169953 3071 True 924.0 1081 86.1010 1033 3238 3 chr7A.!!$R4 2205
2 TraesCS7A01G025500 chr7A 10155957 10157287 1330 True 917.0 917 79.5260 1463 2833 1 chr7A.!!$R2 1370
3 TraesCS7A01G025500 chr7A 9382013 9383313 1300 False 640.0 640 76.0740 1022 2350 1 chr7A.!!$F1 1328
4 TraesCS7A01G025500 chr7A 10105521 10107596 2075 True 396.0 514 80.0905 1118 2338 2 chr7A.!!$R3 1220
5 TraesCS7A01G025500 chr7D 10961471 10963862 2391 True 1668.0 3223 94.9475 779 3238 2 chr7D.!!$R4 2459
6 TraesCS7A01G025500 chr7D 10908987 10910377 1390 True 1280.0 1280 83.6650 1083 2457 1 chr7D.!!$R2 1374
7 TraesCS7A01G025500 chr7D 10971158 10974178 3020 True 1253.5 1408 82.8325 1094 3239 2 chr7D.!!$R5 2145
8 TraesCS7A01G025500 chr7D 109143135 109144725 1590 True 1016.0 1016 78.5450 1019 2633 1 chr7D.!!$R3 1614
9 TraesCS7A01G025500 chr7D 10902650 10903402 752 True 976.0 976 90.0910 2480 3238 1 chr7D.!!$R1 758
10 TraesCS7A01G025500 chr7D 214337799 214338439 640 False 924.0 924 92.5080 1 654 1 chr7D.!!$F3 653
11 TraesCS7A01G025500 chr7D 8818857 8820582 1725 False 898.0 898 76.6500 1020 2792 1 chr7D.!!$F1 1772
12 TraesCS7A01G025500 chr7D 9354854 9355615 761 False 508.0 508 78.8930 1051 1823 1 chr7D.!!$F2 772
13 TraesCS7A01G025500 chr4B 654201948 654203321 1373 False 1051.0 1051 80.6870 1025 2408 1 chr4B.!!$F1 1383
14 TraesCS7A01G025500 chr4D 507350862 507352257 1395 True 1026.0 1026 80.2110 1009 2408 1 chr4D.!!$R1 1399
15 TraesCS7A01G025500 chr7B 68222066 68223655 1589 True 1003.0 1003 78.4620 1019 2632 1 chr7B.!!$R1 1613
16 TraesCS7A01G025500 chr6D 417352808 417353448 640 False 974.0 974 93.8840 1 654 1 chr6D.!!$F1 653
17 TraesCS7A01G025500 chr1B 585940439 585941092 653 False 965.0 965 93.3230 1 654 1 chr1B.!!$F1 653
18 TraesCS7A01G025500 chr1A 534257118 534257785 667 False 933.0 933 92.2160 1 654 1 chr1A.!!$F1 653
19 TraesCS7A01G025500 chr5D 91865332 91865938 606 False 931.0 931 94.1750 1 618 1 chr5D.!!$F1 617
20 TraesCS7A01G025500 chr5D 435481796 435482411 615 True 503.5 763 94.8910 4 654 2 chr5D.!!$R1 650
21 TraesCS7A01G025500 chr4A 728643849 728645495 1646 True 920.0 920 77.3580 977 2630 1 chr4A.!!$R2 1653
22 TraesCS7A01G025500 chr4A 728356244 728357563 1319 True 883.0 883 79.3080 1881 3239 1 chr4A.!!$R1 1358
23 TraesCS7A01G025500 chr4A 729157299 729158924 1625 False 863.0 863 76.9050 1022 2676 1 chr4A.!!$F3 1654
24 TraesCS7A01G025500 chr4A 539150591 539151222 631 False 861.0 861 91.0060 1 655 1 chr4A.!!$F1 654
25 TraesCS7A01G025500 chr4A 731097611 731098866 1255 False 850.0 850 79.2730 981 2252 1 chr4A.!!$F10 1271
26 TraesCS7A01G025500 chr4A 729819300 729820857 1557 False 848.0 848 77.0520 1100 2673 1 chr4A.!!$F5 1573
27 TraesCS7A01G025500 chr4A 727711501 727712655 1154 False 791.0 791 79.4440 1468 2633 1 chr4A.!!$F2 1165
28 TraesCS7A01G025500 chr4A 729827432 729828827 1395 False 785.0 785 77.3680 977 2381 1 chr4A.!!$F6 1404
29 TraesCS7A01G025500 chr4A 730456111 730457601 1490 False 760.0 760 76.4630 1081 2608 1 chr4A.!!$F8 1527
30 TraesCS7A01G025500 chr4A 730322745 730324050 1305 False 745.0 745 77.4100 1006 2306 1 chr4A.!!$F7 1300
31 TraesCS7A01G025500 chr4A 729056664 729057783 1119 True 721.0 721 78.5780 1102 2243 1 chr4A.!!$R3 1141
32 TraesCS7A01G025500 chr4A 727412179 727413449 1270 False 594.5 900 87.3625 2334 3239 2 chr4A.!!$F11 905
33 TraesCS7A01G025500 chr4A 731061953 731062773 820 False 496.0 496 78.0000 1406 2243 1 chr4A.!!$F9 837
34 TraesCS7A01G025500 chr4A 729677748 729678462 714 False 409.0 409 77.4370 1021 1762 1 chr4A.!!$F4 741
35 TraesCS7A01G025500 chr5B 542054645 542055281 636 False 902.0 902 92.3200 21 654 1 chr5B.!!$F1 633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
245 308 0.175989 GTTCGTCCAGGGAGACATCC 59.824 60.0 0.0 0.0 45.85 3.51 F
701 769 0.250166 AAGGTGTGCTTGTACGGGTC 60.250 55.0 0.0 0.0 0.00 4.46 F
715 783 0.312729 CGGGTCAAAAACTTTCGGGG 59.687 55.0 0.0 0.0 0.00 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1556 1717 0.107459 GAAAGCCAGGCCTGAGGTAG 60.107 60.0 34.91 17.77 0.0 3.18 R
1954 4052 0.467384 CGATCCTTGAGCCACCAGAT 59.533 55.0 0.00 0.00 0.0 2.90 R
2370 4479 0.537371 CCGAACAGGAAACCAAGCCT 60.537 55.0 0.00 0.00 45.0 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 29 4.357947 GCTCCAGCGTCGTCCACA 62.358 66.667 0.00 0.00 0.00 4.17
103 105 2.444706 CCCGAGCAGGATCTCCCA 60.445 66.667 0.00 0.00 45.00 4.37
108 110 1.000283 CGAGCAGGATCTCCCATGTAC 60.000 57.143 0.00 0.00 37.41 2.90
148 150 1.298157 CGATGCTTCTGGTTTGCCGA 61.298 55.000 0.00 0.00 37.67 5.54
149 151 0.881118 GATGCTTCTGGTTTGCCGAA 59.119 50.000 0.00 0.00 37.67 4.30
150 152 0.598065 ATGCTTCTGGTTTGCCGAAC 59.402 50.000 0.00 0.00 37.67 3.95
151 153 0.465460 TGCTTCTGGTTTGCCGAACT 60.465 50.000 0.00 0.00 38.35 3.01
152 154 0.238553 GCTTCTGGTTTGCCGAACTC 59.761 55.000 0.00 0.00 38.35 3.01
153 155 0.512952 CTTCTGGTTTGCCGAACTCG 59.487 55.000 0.00 0.00 38.35 4.18
154 156 1.503818 TTCTGGTTTGCCGAACTCGC 61.504 55.000 0.00 0.00 38.35 5.03
155 157 3.295228 CTGGTTTGCCGAACTCGCG 62.295 63.158 0.00 0.00 38.35 5.87
156 158 4.736631 GGTTTGCCGAACTCGCGC 62.737 66.667 0.00 0.00 38.35 6.86
157 159 4.736631 GTTTGCCGAACTCGCGCC 62.737 66.667 0.00 0.00 38.18 6.53
245 308 0.175989 GTTCGTCCAGGGAGACATCC 59.824 60.000 0.00 0.00 45.85 3.51
290 357 0.813610 CGGCGGCTCAACATGGATTA 60.814 55.000 7.61 0.00 0.00 1.75
544 611 1.676014 GCTAAATCGGCCAGTCAGTGT 60.676 52.381 2.24 0.00 0.00 3.55
553 620 1.594293 CAGTCAGTGTTCCGCGGTT 60.594 57.895 27.15 3.97 0.00 4.44
565 632 1.942712 CGCGGTTCCGATTAGTCCG 60.943 63.158 15.69 3.32 43.37 4.79
602 670 2.861274 TGTGACATGGCTCAAATGTGA 58.139 42.857 0.00 0.00 38.37 3.58
655 723 7.392113 TGTGATGGTTTTGGATAAATAACTCGT 59.608 33.333 0.00 0.00 0.00 4.18
656 724 8.241367 GTGATGGTTTTGGATAAATAACTCGTT 58.759 33.333 0.00 0.00 0.00 3.85
657 725 8.798402 TGATGGTTTTGGATAAATAACTCGTTT 58.202 29.630 0.00 0.00 0.00 3.60
658 726 9.634163 GATGGTTTTGGATAAATAACTCGTTTT 57.366 29.630 0.00 0.00 0.00 2.43
659 727 9.990360 ATGGTTTTGGATAAATAACTCGTTTTT 57.010 25.926 0.00 0.00 0.00 1.94
660 728 9.465985 TGGTTTTGGATAAATAACTCGTTTTTC 57.534 29.630 0.00 0.00 0.00 2.29
661 729 9.687210 GGTTTTGGATAAATAACTCGTTTTTCT 57.313 29.630 0.00 0.00 0.00 2.52
671 739 7.962964 ATAACTCGTTTTTCTGATTCTCACA 57.037 32.000 0.00 0.00 0.00 3.58
672 740 6.677781 AACTCGTTTTTCTGATTCTCACAA 57.322 33.333 0.00 0.00 0.00 3.33
673 741 6.292389 ACTCGTTTTTCTGATTCTCACAAG 57.708 37.500 0.00 0.00 0.00 3.16
674 742 5.237344 ACTCGTTTTTCTGATTCTCACAAGG 59.763 40.000 0.00 0.00 0.00 3.61
675 743 5.123227 TCGTTTTTCTGATTCTCACAAGGT 58.877 37.500 0.00 0.00 0.00 3.50
676 744 5.588648 TCGTTTTTCTGATTCTCACAAGGTT 59.411 36.000 0.00 0.00 0.00 3.50
677 745 5.682862 CGTTTTTCTGATTCTCACAAGGTTG 59.317 40.000 0.00 0.00 0.00 3.77
678 746 6.564328 GTTTTTCTGATTCTCACAAGGTTGT 58.436 36.000 0.00 0.00 43.36 3.32
690 758 2.425668 ACAAGGTTGTGTTAAGGTGTGC 59.574 45.455 0.00 0.00 40.49 4.57
691 759 2.687935 CAAGGTTGTGTTAAGGTGTGCT 59.312 45.455 0.00 0.00 0.00 4.40
692 760 3.012934 AGGTTGTGTTAAGGTGTGCTT 57.987 42.857 0.00 0.00 0.00 3.91
693 761 2.687935 AGGTTGTGTTAAGGTGTGCTTG 59.312 45.455 0.00 0.00 0.00 4.01
694 762 2.425668 GGTTGTGTTAAGGTGTGCTTGT 59.574 45.455 0.00 0.00 0.00 3.16
695 763 3.628487 GGTTGTGTTAAGGTGTGCTTGTA 59.372 43.478 0.00 0.00 0.00 2.41
696 764 4.496840 GGTTGTGTTAAGGTGTGCTTGTAC 60.497 45.833 0.00 0.00 0.00 2.90
697 765 2.867368 TGTGTTAAGGTGTGCTTGTACG 59.133 45.455 0.00 0.00 0.00 3.67
698 766 2.222445 GTGTTAAGGTGTGCTTGTACGG 59.778 50.000 0.00 0.00 0.00 4.02
699 767 1.802365 GTTAAGGTGTGCTTGTACGGG 59.198 52.381 0.00 0.00 0.00 5.28
700 768 1.050204 TAAGGTGTGCTTGTACGGGT 58.950 50.000 0.00 0.00 0.00 5.28
701 769 0.250166 AAGGTGTGCTTGTACGGGTC 60.250 55.000 0.00 0.00 0.00 4.46
702 770 1.070105 GGTGTGCTTGTACGGGTCA 59.930 57.895 0.00 0.00 0.00 4.02
703 771 0.533308 GGTGTGCTTGTACGGGTCAA 60.533 55.000 0.00 0.00 0.00 3.18
704 772 1.301423 GTGTGCTTGTACGGGTCAAA 58.699 50.000 0.00 0.00 0.00 2.69
705 773 1.671845 GTGTGCTTGTACGGGTCAAAA 59.328 47.619 0.00 0.00 0.00 2.44
706 774 2.097791 GTGTGCTTGTACGGGTCAAAAA 59.902 45.455 0.00 0.00 0.00 1.94
707 775 2.097791 TGTGCTTGTACGGGTCAAAAAC 59.902 45.455 0.00 0.00 0.00 2.43
708 776 2.356695 GTGCTTGTACGGGTCAAAAACT 59.643 45.455 0.00 0.00 0.00 2.66
709 777 3.018149 TGCTTGTACGGGTCAAAAACTT 58.982 40.909 0.00 0.00 0.00 2.66
710 778 3.444388 TGCTTGTACGGGTCAAAAACTTT 59.556 39.130 0.00 0.00 0.00 2.66
711 779 4.039703 GCTTGTACGGGTCAAAAACTTTC 58.960 43.478 0.00 0.00 0.00 2.62
712 780 3.948196 TGTACGGGTCAAAAACTTTCG 57.052 42.857 0.00 0.00 0.00 3.46
713 781 2.613133 TGTACGGGTCAAAAACTTTCGG 59.387 45.455 0.00 0.00 0.00 4.30
714 782 1.026584 ACGGGTCAAAAACTTTCGGG 58.973 50.000 0.00 0.00 0.00 5.14
715 783 0.312729 CGGGTCAAAAACTTTCGGGG 59.687 55.000 0.00 0.00 0.00 5.73
716 784 1.694844 GGGTCAAAAACTTTCGGGGA 58.305 50.000 0.00 0.00 0.00 4.81
717 785 2.244695 GGGTCAAAAACTTTCGGGGAT 58.755 47.619 0.00 0.00 0.00 3.85
718 786 2.230508 GGGTCAAAAACTTTCGGGGATC 59.769 50.000 0.00 0.00 0.00 3.36
719 787 3.154710 GGTCAAAAACTTTCGGGGATCT 58.845 45.455 0.00 0.00 0.00 2.75
720 788 3.572682 GGTCAAAAACTTTCGGGGATCTT 59.427 43.478 0.00 0.00 0.00 2.40
721 789 4.038763 GGTCAAAAACTTTCGGGGATCTTT 59.961 41.667 0.00 0.00 0.00 2.52
722 790 4.982295 GTCAAAAACTTTCGGGGATCTTTG 59.018 41.667 0.00 0.00 0.00 2.77
723 791 4.038642 TCAAAAACTTTCGGGGATCTTTGG 59.961 41.667 0.00 0.00 0.00 3.28
724 792 3.518992 AAACTTTCGGGGATCTTTGGA 57.481 42.857 0.00 0.00 0.00 3.53
725 793 2.789409 ACTTTCGGGGATCTTTGGAG 57.211 50.000 0.00 0.00 0.00 3.86
726 794 1.985895 ACTTTCGGGGATCTTTGGAGT 59.014 47.619 0.00 0.00 0.00 3.85
727 795 3.178865 ACTTTCGGGGATCTTTGGAGTA 58.821 45.455 0.00 0.00 0.00 2.59
728 796 3.780850 ACTTTCGGGGATCTTTGGAGTAT 59.219 43.478 0.00 0.00 0.00 2.12
729 797 4.227527 ACTTTCGGGGATCTTTGGAGTATT 59.772 41.667 0.00 0.00 0.00 1.89
730 798 4.855298 TTCGGGGATCTTTGGAGTATTT 57.145 40.909 0.00 0.00 0.00 1.40
731 799 5.961398 TTCGGGGATCTTTGGAGTATTTA 57.039 39.130 0.00 0.00 0.00 1.40
732 800 5.961398 TCGGGGATCTTTGGAGTATTTAA 57.039 39.130 0.00 0.00 0.00 1.52
733 801 5.677567 TCGGGGATCTTTGGAGTATTTAAC 58.322 41.667 0.00 0.00 0.00 2.01
734 802 5.190132 TCGGGGATCTTTGGAGTATTTAACA 59.810 40.000 0.00 0.00 0.00 2.41
735 803 5.883673 CGGGGATCTTTGGAGTATTTAACAA 59.116 40.000 0.00 0.00 0.00 2.83
736 804 6.038271 CGGGGATCTTTGGAGTATTTAACAAG 59.962 42.308 0.00 0.00 0.00 3.16
737 805 6.890268 GGGGATCTTTGGAGTATTTAACAAGT 59.110 38.462 0.00 0.00 0.00 3.16
738 806 7.067129 GGGGATCTTTGGAGTATTTAACAAGTC 59.933 40.741 0.00 0.00 0.00 3.01
739 807 7.829706 GGGATCTTTGGAGTATTTAACAAGTCT 59.170 37.037 0.00 0.00 0.00 3.24
740 808 8.884726 GGATCTTTGGAGTATTTAACAAGTCTC 58.115 37.037 0.00 0.00 0.00 3.36
741 809 7.884816 TCTTTGGAGTATTTAACAAGTCTCG 57.115 36.000 0.00 0.00 0.00 4.04
742 810 6.872020 TCTTTGGAGTATTTAACAAGTCTCGG 59.128 38.462 0.00 0.00 0.00 4.63
743 811 5.080969 TGGAGTATTTAACAAGTCTCGGG 57.919 43.478 0.00 0.00 0.00 5.14
744 812 3.869832 GGAGTATTTAACAAGTCTCGGGC 59.130 47.826 0.00 0.00 0.00 6.13
745 813 4.382793 GGAGTATTTAACAAGTCTCGGGCT 60.383 45.833 0.00 0.00 0.00 5.19
746 814 4.504858 AGTATTTAACAAGTCTCGGGCTG 58.495 43.478 0.00 0.00 0.00 4.85
747 815 3.695830 ATTTAACAAGTCTCGGGCTGA 57.304 42.857 0.00 0.00 0.00 4.26
748 816 2.743636 TTAACAAGTCTCGGGCTGAG 57.256 50.000 17.47 17.47 46.72 3.35
762 830 3.149899 CTGAGATGCGGCAAAGACT 57.850 52.632 6.82 4.40 0.00 3.24
763 831 2.299993 CTGAGATGCGGCAAAGACTA 57.700 50.000 6.82 0.00 0.00 2.59
764 832 2.831333 CTGAGATGCGGCAAAGACTAT 58.169 47.619 6.82 0.00 0.00 2.12
765 833 3.201290 CTGAGATGCGGCAAAGACTATT 58.799 45.455 6.82 0.00 0.00 1.73
766 834 3.609853 TGAGATGCGGCAAAGACTATTT 58.390 40.909 6.82 0.00 0.00 1.40
767 835 3.623060 TGAGATGCGGCAAAGACTATTTC 59.377 43.478 6.82 0.00 0.00 2.17
768 836 3.609853 AGATGCGGCAAAGACTATTTCA 58.390 40.909 6.82 0.00 0.00 2.69
769 837 4.202441 AGATGCGGCAAAGACTATTTCAT 58.798 39.130 6.82 0.00 0.00 2.57
770 838 5.368145 AGATGCGGCAAAGACTATTTCATA 58.632 37.500 6.82 0.00 0.00 2.15
771 839 5.822519 AGATGCGGCAAAGACTATTTCATAA 59.177 36.000 6.82 0.00 0.00 1.90
772 840 5.888691 TGCGGCAAAGACTATTTCATAAA 57.111 34.783 0.00 0.00 0.00 1.40
773 841 5.879237 TGCGGCAAAGACTATTTCATAAAG 58.121 37.500 0.00 0.00 0.00 1.85
774 842 5.163663 TGCGGCAAAGACTATTTCATAAAGG 60.164 40.000 0.00 0.00 0.00 3.11
775 843 5.733373 GCGGCAAAGACTATTTCATAAAGGG 60.733 44.000 0.00 0.00 0.00 3.95
776 844 5.592054 GGCAAAGACTATTTCATAAAGGGC 58.408 41.667 0.00 0.00 0.00 5.19
777 845 5.127031 GGCAAAGACTATTTCATAAAGGGCA 59.873 40.000 0.00 0.00 0.00 5.36
814 882 1.201647 CATCGTACCCTCGTTGACTGT 59.798 52.381 0.00 0.00 33.94 3.55
858 926 4.388499 GGCGTCCACATCCACCGT 62.388 66.667 0.00 0.00 0.00 4.83
859 927 2.813908 GCGTCCACATCCACCGTC 60.814 66.667 0.00 0.00 0.00 4.79
860 928 2.506217 CGTCCACATCCACCGTCG 60.506 66.667 0.00 0.00 0.00 5.12
861 929 2.813908 GTCCACATCCACCGTCGC 60.814 66.667 0.00 0.00 0.00 5.19
862 930 4.077184 TCCACATCCACCGTCGCC 62.077 66.667 0.00 0.00 0.00 5.54
864 932 4.429212 CACATCCACCGTCGCCGA 62.429 66.667 0.00 0.00 35.63 5.54
865 933 4.430765 ACATCCACCGTCGCCGAC 62.431 66.667 7.29 7.29 35.63 4.79
928 996 1.203994 GTCGACGATTTCCTCTTCCCA 59.796 52.381 0.00 0.00 0.00 4.37
930 998 2.100916 TCGACGATTTCCTCTTCCCATC 59.899 50.000 0.00 0.00 0.00 3.51
936 1004 0.914644 TTCCTCTTCCCATCTGCAGG 59.085 55.000 15.13 0.00 0.00 4.85
941 1009 1.988107 TCTTCCCATCTGCAGGTTTCT 59.012 47.619 15.13 0.00 0.00 2.52
943 1011 2.978156 TCCCATCTGCAGGTTTCTTT 57.022 45.000 15.13 0.00 0.00 2.52
944 1012 3.243359 TCCCATCTGCAGGTTTCTTTT 57.757 42.857 15.13 0.00 0.00 2.27
945 1013 3.157087 TCCCATCTGCAGGTTTCTTTTC 58.843 45.455 15.13 0.00 0.00 2.29
946 1014 3.160269 CCCATCTGCAGGTTTCTTTTCT 58.840 45.455 15.13 0.00 0.00 2.52
947 1015 4.042809 TCCCATCTGCAGGTTTCTTTTCTA 59.957 41.667 15.13 0.00 0.00 2.10
990 1058 3.901797 CTGACCCTTGTCCCGGTGC 62.902 68.421 0.00 0.00 41.01 5.01
1067 1144 4.342862 TCTTGGAGAAGAAGACCAACTG 57.657 45.455 0.00 0.00 38.52 3.16
1143 1247 2.035704 CGACCTCATTCTGGAGATCCTG 59.964 54.545 0.00 0.00 37.05 3.86
1189 1293 4.361253 GCTTCAAGTGCGTCTCCA 57.639 55.556 0.00 0.00 0.00 3.86
1245 1349 1.529010 CAACAAGCTGCCCCAGACA 60.529 57.895 0.00 0.00 32.44 3.41
1258 1362 3.303135 AGACACTCGCCGGCTTCA 61.303 61.111 26.68 7.19 0.00 3.02
1272 1376 2.102420 CGGCTTCATCTACACCACCATA 59.898 50.000 0.00 0.00 0.00 2.74
1304 1423 2.924105 GCCACCTCCACTTTGCTGC 61.924 63.158 0.00 0.00 0.00 5.25
1351 1470 3.185203 ACCCTTGCCTCCCTTGCA 61.185 61.111 0.00 0.00 36.84 4.08
1445 1567 5.947508 CTGCAAGAACAAGGTGAACCCTTT 61.948 45.833 0.00 0.00 44.87 3.11
1556 1717 2.233654 CGGCGAGCAGACATAGCAC 61.234 63.158 0.00 0.00 0.00 4.40
1561 1728 1.678627 CGAGCAGACATAGCACTACCT 59.321 52.381 0.00 0.00 0.00 3.08
1627 1802 2.489938 TTGTTTCGAGCAGGCCTATT 57.510 45.000 3.98 0.00 0.00 1.73
1629 1804 2.356135 TGTTTCGAGCAGGCCTATTTC 58.644 47.619 3.98 2.19 0.00 2.17
1645 1820 4.155826 CCTATTTCGGAACTTGCATCACAA 59.844 41.667 0.00 0.00 36.62 3.33
1950 4048 3.253432 ACAAAATCCTGTTTTCCGAGAGC 59.747 43.478 0.00 0.00 0.00 4.09
1954 4052 1.227999 CCTGTTTTCCGAGAGCGCAA 61.228 55.000 11.47 0.00 35.83 4.85
1995 4097 4.511826 CGCCATAGTAAAGAATTGGTCCTC 59.488 45.833 0.00 0.00 0.00 3.71
2014 4116 1.281577 TCAAGCATACCACCAGCATCA 59.718 47.619 0.00 0.00 0.00 3.07
2179 4282 2.254546 TGAGAAAGACCACGCACAAT 57.745 45.000 0.00 0.00 0.00 2.71
2294 4403 3.134458 AGAACTGTCTCTTCTTTTGGCG 58.866 45.455 0.00 0.00 0.00 5.69
2370 4479 2.028203 TGCTACTGCTTACACTCATGCA 60.028 45.455 0.00 0.00 40.48 3.96
2656 4782 4.327357 CCTTACTTGTGCGATGTCTAGTTG 59.673 45.833 0.00 0.00 0.00 3.16
2773 4908 7.472334 AATGAATTCAGTACAGCTTTGGATT 57.528 32.000 14.54 0.00 0.00 3.01
2782 4917 4.237349 ACAGCTTTGGATTTGTTAACCG 57.763 40.909 2.48 0.00 0.00 4.44
2817 4952 8.286800 TCACGTTATAATGTCCAAAACTGAAAG 58.713 33.333 7.38 0.00 42.29 2.62
2889 5035 5.068215 TGGTCCCTTTTCAGGTGATAAAA 57.932 39.130 0.00 0.00 38.79 1.52
2981 5129 4.284234 AGGGCATTTGTTGTGCTAGAAATT 59.716 37.500 0.00 0.00 42.16 1.82
3150 5715 6.422776 AGAAAAATCACCGTGTACATCATC 57.577 37.500 0.00 0.00 0.00 2.92
3151 5716 5.937540 AGAAAAATCACCGTGTACATCATCA 59.062 36.000 0.00 0.00 0.00 3.07
3152 5717 5.801350 AAAATCACCGTGTACATCATCAG 57.199 39.130 0.00 0.00 0.00 2.90
3153 5718 4.736126 AATCACCGTGTACATCATCAGA 57.264 40.909 0.00 0.00 0.00 3.27
3154 5719 4.944619 ATCACCGTGTACATCATCAGAT 57.055 40.909 0.00 0.00 33.87 2.90
3172 5737 6.373005 TCAGATGACCAGACTCCAAAATTA 57.627 37.500 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 26 1.609932 GCAATGATGAAGCACGTGTG 58.390 50.000 18.38 5.02 0.00 3.82
27 29 0.443869 GTCGCAATGATGAAGCACGT 59.556 50.000 0.00 0.00 0.00 4.49
61 63 1.312371 GCTAATGGAGGCGGTTGCAA 61.312 55.000 0.00 0.00 45.35 4.08
103 105 1.705873 CCCCTAGGCTTCTCGTACAT 58.294 55.000 2.05 0.00 0.00 2.29
225 288 0.895530 GATGTCTCCCTGGACGAACA 59.104 55.000 0.00 0.00 38.91 3.18
245 308 1.405821 GACCTCGTACCTCCATGACTG 59.594 57.143 0.00 0.00 0.00 3.51
544 611 0.179129 GACTAATCGGAACCGCGGAA 60.179 55.000 35.90 11.82 39.59 4.30
553 620 2.022195 CCAACTCTCGGACTAATCGGA 58.978 52.381 0.00 0.00 33.48 4.55
621 689 4.222336 TCCAAAACCATCACATTTGAGGT 58.778 39.130 0.00 0.00 36.41 3.85
628 696 8.405531 CGAGTTATTTATCCAAAACCATCACAT 58.594 33.333 0.00 0.00 0.00 3.21
668 736 7.344052 AAGCACACCTTAACACAACCTTGTG 62.344 44.000 15.21 15.21 46.67 3.33
669 737 2.425668 GCACACCTTAACACAACCTTGT 59.574 45.455 0.00 0.00 43.36 3.16
670 738 2.687935 AGCACACCTTAACACAACCTTG 59.312 45.455 0.00 0.00 0.00 3.61
671 739 3.012934 AGCACACCTTAACACAACCTT 57.987 42.857 0.00 0.00 0.00 3.50
672 740 2.687935 CAAGCACACCTTAACACAACCT 59.312 45.455 0.00 0.00 31.00 3.50
673 741 2.425668 ACAAGCACACCTTAACACAACC 59.574 45.455 0.00 0.00 31.00 3.77
674 742 3.775661 ACAAGCACACCTTAACACAAC 57.224 42.857 0.00 0.00 31.00 3.32
675 743 3.310227 CGTACAAGCACACCTTAACACAA 59.690 43.478 0.00 0.00 31.00 3.33
676 744 2.867368 CGTACAAGCACACCTTAACACA 59.133 45.455 0.00 0.00 31.00 3.72
677 745 2.222445 CCGTACAAGCACACCTTAACAC 59.778 50.000 0.00 0.00 31.00 3.32
678 746 2.485903 CCGTACAAGCACACCTTAACA 58.514 47.619 0.00 0.00 31.00 2.41
679 747 1.802365 CCCGTACAAGCACACCTTAAC 59.198 52.381 0.00 0.00 31.00 2.01
680 748 1.417145 ACCCGTACAAGCACACCTTAA 59.583 47.619 0.00 0.00 31.00 1.85
681 749 1.001181 GACCCGTACAAGCACACCTTA 59.999 52.381 0.00 0.00 31.00 2.69
682 750 0.250166 GACCCGTACAAGCACACCTT 60.250 55.000 0.00 0.00 0.00 3.50
683 751 1.370064 GACCCGTACAAGCACACCT 59.630 57.895 0.00 0.00 0.00 4.00
684 752 0.533308 TTGACCCGTACAAGCACACC 60.533 55.000 0.00 0.00 0.00 4.16
685 753 1.301423 TTTGACCCGTACAAGCACAC 58.699 50.000 0.00 0.00 0.00 3.82
686 754 2.039818 TTTTGACCCGTACAAGCACA 57.960 45.000 0.00 0.00 0.00 4.57
687 755 2.356695 AGTTTTTGACCCGTACAAGCAC 59.643 45.455 0.00 0.00 0.00 4.40
688 756 2.645802 AGTTTTTGACCCGTACAAGCA 58.354 42.857 0.00 0.00 0.00 3.91
689 757 3.703286 AAGTTTTTGACCCGTACAAGC 57.297 42.857 0.00 0.00 0.00 4.01
690 758 4.276460 CGAAAGTTTTTGACCCGTACAAG 58.724 43.478 0.00 0.00 0.00 3.16
691 759 3.065095 CCGAAAGTTTTTGACCCGTACAA 59.935 43.478 0.00 0.00 0.00 2.41
692 760 2.613133 CCGAAAGTTTTTGACCCGTACA 59.387 45.455 0.00 0.00 0.00 2.90
693 761 2.031769 CCCGAAAGTTTTTGACCCGTAC 60.032 50.000 0.00 0.00 0.00 3.67
694 762 2.220313 CCCGAAAGTTTTTGACCCGTA 58.780 47.619 0.00 0.00 0.00 4.02
695 763 1.026584 CCCGAAAGTTTTTGACCCGT 58.973 50.000 0.00 0.00 0.00 5.28
696 764 0.312729 CCCCGAAAGTTTTTGACCCG 59.687 55.000 0.00 0.00 0.00 5.28
697 765 1.694844 TCCCCGAAAGTTTTTGACCC 58.305 50.000 0.00 0.00 0.00 4.46
698 766 3.154710 AGATCCCCGAAAGTTTTTGACC 58.845 45.455 0.00 0.00 0.00 4.02
699 767 4.848562 AAGATCCCCGAAAGTTTTTGAC 57.151 40.909 0.00 0.00 0.00 3.18
700 768 4.038642 CCAAAGATCCCCGAAAGTTTTTGA 59.961 41.667 0.00 0.00 0.00 2.69
701 769 4.038642 TCCAAAGATCCCCGAAAGTTTTTG 59.961 41.667 0.00 0.00 0.00 2.44
702 770 4.219919 TCCAAAGATCCCCGAAAGTTTTT 58.780 39.130 0.00 0.00 0.00 1.94
703 771 3.826729 CTCCAAAGATCCCCGAAAGTTTT 59.173 43.478 0.00 0.00 0.00 2.43
704 772 3.181433 ACTCCAAAGATCCCCGAAAGTTT 60.181 43.478 0.00 0.00 0.00 2.66
705 773 2.375509 ACTCCAAAGATCCCCGAAAGTT 59.624 45.455 0.00 0.00 0.00 2.66
706 774 1.985895 ACTCCAAAGATCCCCGAAAGT 59.014 47.619 0.00 0.00 0.00 2.66
707 775 2.789409 ACTCCAAAGATCCCCGAAAG 57.211 50.000 0.00 0.00 0.00 2.62
708 776 4.855298 AATACTCCAAAGATCCCCGAAA 57.145 40.909 0.00 0.00 0.00 3.46
709 777 4.855298 AAATACTCCAAAGATCCCCGAA 57.145 40.909 0.00 0.00 0.00 4.30
710 778 5.190132 TGTTAAATACTCCAAAGATCCCCGA 59.810 40.000 0.00 0.00 0.00 5.14
711 779 5.433526 TGTTAAATACTCCAAAGATCCCCG 58.566 41.667 0.00 0.00 0.00 5.73
712 780 6.890268 ACTTGTTAAATACTCCAAAGATCCCC 59.110 38.462 0.00 0.00 0.00 4.81
713 781 7.829706 AGACTTGTTAAATACTCCAAAGATCCC 59.170 37.037 0.00 0.00 0.00 3.85
714 782 8.794335 AGACTTGTTAAATACTCCAAAGATCC 57.206 34.615 0.00 0.00 0.00 3.36
715 783 8.596380 CGAGACTTGTTAAATACTCCAAAGATC 58.404 37.037 0.00 0.00 0.00 2.75
716 784 7.549488 CCGAGACTTGTTAAATACTCCAAAGAT 59.451 37.037 0.00 0.00 0.00 2.40
717 785 6.872020 CCGAGACTTGTTAAATACTCCAAAGA 59.128 38.462 0.00 0.00 0.00 2.52
718 786 6.092259 CCCGAGACTTGTTAAATACTCCAAAG 59.908 42.308 0.00 0.00 0.00 2.77
719 787 5.935789 CCCGAGACTTGTTAAATACTCCAAA 59.064 40.000 0.00 0.00 0.00 3.28
720 788 5.484715 CCCGAGACTTGTTAAATACTCCAA 58.515 41.667 0.00 0.00 0.00 3.53
721 789 4.622220 GCCCGAGACTTGTTAAATACTCCA 60.622 45.833 0.00 0.00 0.00 3.86
722 790 3.869832 GCCCGAGACTTGTTAAATACTCC 59.130 47.826 0.00 0.00 0.00 3.85
723 791 4.567159 CAGCCCGAGACTTGTTAAATACTC 59.433 45.833 0.00 0.00 0.00 2.59
724 792 4.222145 TCAGCCCGAGACTTGTTAAATACT 59.778 41.667 0.00 0.00 0.00 2.12
725 793 4.501071 TCAGCCCGAGACTTGTTAAATAC 58.499 43.478 0.00 0.00 0.00 1.89
726 794 4.464951 TCTCAGCCCGAGACTTGTTAAATA 59.535 41.667 0.00 0.00 46.18 1.40
727 795 3.260884 TCTCAGCCCGAGACTTGTTAAAT 59.739 43.478 0.00 0.00 46.18 1.40
728 796 2.631062 TCTCAGCCCGAGACTTGTTAAA 59.369 45.455 0.00 0.00 46.18 1.52
729 797 2.244695 TCTCAGCCCGAGACTTGTTAA 58.755 47.619 0.00 0.00 46.18 2.01
730 798 1.919240 TCTCAGCCCGAGACTTGTTA 58.081 50.000 0.00 0.00 46.18 2.41
731 799 2.746697 TCTCAGCCCGAGACTTGTT 58.253 52.632 0.00 0.00 46.18 2.83
732 800 4.521559 TCTCAGCCCGAGACTTGT 57.478 55.556 0.00 0.00 46.18 3.16
741 809 2.751436 TTTGCCGCATCTCAGCCC 60.751 61.111 0.00 0.00 0.00 5.19
742 810 1.746615 TCTTTGCCGCATCTCAGCC 60.747 57.895 0.00 0.00 0.00 4.85
743 811 1.023513 AGTCTTTGCCGCATCTCAGC 61.024 55.000 0.00 0.00 0.00 4.26
744 812 2.299993 TAGTCTTTGCCGCATCTCAG 57.700 50.000 0.00 0.00 0.00 3.35
745 813 2.988010 ATAGTCTTTGCCGCATCTCA 57.012 45.000 0.00 0.00 0.00 3.27
746 814 3.623060 TGAAATAGTCTTTGCCGCATCTC 59.377 43.478 0.00 0.00 0.00 2.75
747 815 3.609853 TGAAATAGTCTTTGCCGCATCT 58.390 40.909 0.00 0.00 0.00 2.90
748 816 4.558538 ATGAAATAGTCTTTGCCGCATC 57.441 40.909 0.00 0.00 0.00 3.91
749 817 6.449635 TTTATGAAATAGTCTTTGCCGCAT 57.550 33.333 0.00 0.00 0.00 4.73
750 818 5.163663 CCTTTATGAAATAGTCTTTGCCGCA 60.164 40.000 0.00 0.00 0.00 5.69
751 819 5.273944 CCTTTATGAAATAGTCTTTGCCGC 58.726 41.667 0.00 0.00 0.00 6.53
752 820 5.733373 GCCCTTTATGAAATAGTCTTTGCCG 60.733 44.000 0.00 0.00 0.00 5.69
753 821 5.127031 TGCCCTTTATGAAATAGTCTTTGCC 59.873 40.000 0.00 0.00 0.00 4.52
754 822 6.036470 GTGCCCTTTATGAAATAGTCTTTGC 58.964 40.000 0.00 0.00 0.00 3.68
755 823 6.128007 ACGTGCCCTTTATGAAATAGTCTTTG 60.128 38.462 0.00 0.00 0.00 2.77
756 824 5.944007 ACGTGCCCTTTATGAAATAGTCTTT 59.056 36.000 0.00 0.00 0.00 2.52
757 825 5.497474 ACGTGCCCTTTATGAAATAGTCTT 58.503 37.500 0.00 0.00 0.00 3.01
758 826 5.099042 ACGTGCCCTTTATGAAATAGTCT 57.901 39.130 0.00 0.00 0.00 3.24
759 827 8.773404 ATATACGTGCCCTTTATGAAATAGTC 57.227 34.615 0.00 0.00 0.00 2.59
760 828 8.999431 CAATATACGTGCCCTTTATGAAATAGT 58.001 33.333 0.00 0.00 0.00 2.12
761 829 8.450964 CCAATATACGTGCCCTTTATGAAATAG 58.549 37.037 0.00 0.00 0.00 1.73
762 830 7.094549 GCCAATATACGTGCCCTTTATGAAATA 60.095 37.037 0.00 0.00 0.00 1.40
763 831 6.294508 GCCAATATACGTGCCCTTTATGAAAT 60.295 38.462 0.00 0.00 0.00 2.17
764 832 5.009210 GCCAATATACGTGCCCTTTATGAAA 59.991 40.000 0.00 0.00 0.00 2.69
765 833 4.517453 GCCAATATACGTGCCCTTTATGAA 59.483 41.667 0.00 0.00 0.00 2.57
766 834 4.069304 GCCAATATACGTGCCCTTTATGA 58.931 43.478 0.00 0.00 0.00 2.15
767 835 3.818210 TGCCAATATACGTGCCCTTTATG 59.182 43.478 0.00 0.00 0.00 1.90
768 836 4.093472 TGCCAATATACGTGCCCTTTAT 57.907 40.909 0.00 0.00 0.00 1.40
769 837 3.562343 TGCCAATATACGTGCCCTTTA 57.438 42.857 0.00 0.00 0.00 1.85
770 838 2.428544 TGCCAATATACGTGCCCTTT 57.571 45.000 0.00 0.00 0.00 3.11
771 839 2.297701 CTTGCCAATATACGTGCCCTT 58.702 47.619 0.00 0.00 0.00 3.95
772 840 1.211949 ACTTGCCAATATACGTGCCCT 59.788 47.619 0.00 0.00 0.00 5.19
773 841 1.602377 GACTTGCCAATATACGTGCCC 59.398 52.381 0.00 0.00 0.00 5.36
774 842 1.602377 GGACTTGCCAATATACGTGCC 59.398 52.381 0.00 0.00 36.34 5.01
775 843 2.285083 TGGACTTGCCAATATACGTGC 58.715 47.619 0.00 0.00 45.87 5.34
814 882 1.667830 CGCTTCGCACCTTGGAGAA 60.668 57.895 0.00 0.00 0.00 2.87
842 910 2.813908 GACGGTGGATGTGGACGC 60.814 66.667 0.00 0.00 0.00 5.19
845 913 4.077184 GGCGACGGTGGATGTGGA 62.077 66.667 0.00 0.00 0.00 4.02
867 935 4.733542 TACCTGGCTTTGGGGCGC 62.734 66.667 0.00 0.00 44.11 6.53
868 936 2.750237 GTACCTGGCTTTGGGGCG 60.750 66.667 0.00 0.00 44.11 6.13
869 937 2.750237 CGTACCTGGCTTTGGGGC 60.750 66.667 0.00 0.00 41.27 5.80
870 938 2.750237 GCGTACCTGGCTTTGGGG 60.750 66.667 0.00 0.00 0.00 4.96
874 942 1.003718 GTGGAGCGTACCTGGCTTT 60.004 57.895 0.00 0.00 41.72 3.51
877 945 3.391382 AGGTGGAGCGTACCTGGC 61.391 66.667 8.50 0.00 46.48 4.85
924 992 2.978156 AAAGAAACCTGCAGATGGGA 57.022 45.000 17.39 0.00 0.00 4.37
928 996 6.118852 GGAGATAGAAAAGAAACCTGCAGAT 58.881 40.000 17.39 0.00 0.00 2.90
930 998 5.248640 TGGAGATAGAAAAGAAACCTGCAG 58.751 41.667 6.78 6.78 0.00 4.41
936 1004 9.612066 ATCTGAGATTGGAGATAGAAAAGAAAC 57.388 33.333 0.00 0.00 0.00 2.78
941 1009 6.739843 GCCGATCTGAGATTGGAGATAGAAAA 60.740 42.308 28.88 0.00 0.00 2.29
943 1011 4.219507 GCCGATCTGAGATTGGAGATAGAA 59.780 45.833 28.88 0.00 0.00 2.10
944 1012 3.761218 GCCGATCTGAGATTGGAGATAGA 59.239 47.826 28.88 0.00 0.00 1.98
945 1013 3.119173 GGCCGATCTGAGATTGGAGATAG 60.119 52.174 28.88 5.14 0.00 2.08
946 1014 2.828520 GGCCGATCTGAGATTGGAGATA 59.171 50.000 28.88 0.00 0.00 1.98
947 1015 1.622811 GGCCGATCTGAGATTGGAGAT 59.377 52.381 28.88 0.00 0.00 2.75
990 1058 4.051167 TGCTGCATGGACAGGGGG 62.051 66.667 0.00 0.00 38.16 5.40
997 1065 0.622136 AATCTGGAGTGCTGCATGGA 59.378 50.000 5.27 0.71 0.00 3.41
999 1067 1.671328 CTGAATCTGGAGTGCTGCATG 59.329 52.381 5.27 0.00 0.00 4.06
1001 1069 0.675837 GCTGAATCTGGAGTGCTGCA 60.676 55.000 0.00 0.00 0.00 4.41
1067 1144 2.440980 GATGGTTGCCCAGCCTCC 60.441 66.667 2.86 0.00 46.15 4.30
1245 1349 1.320344 TGTAGATGAAGCCGGCGAGT 61.320 55.000 23.20 10.88 0.00 4.18
1258 1362 4.568072 TGTTGCTTATGGTGGTGTAGAT 57.432 40.909 0.00 0.00 0.00 1.98
1292 1411 0.250467 GGAGACAGCAGCAAAGTGGA 60.250 55.000 0.00 0.00 0.00 4.02
1304 1423 4.227134 CCCCATCGCCGGAGACAG 62.227 72.222 11.10 6.25 0.00 3.51
1324 1443 2.654877 GCAAGGGTCGAACGAGGA 59.345 61.111 0.00 0.00 0.00 3.71
1351 1470 0.616371 TTGTACTTGGTAGGCCGCAT 59.384 50.000 0.00 0.00 37.67 4.73
1423 1545 1.398692 GGGTTCACCTTGTTCTTGCA 58.601 50.000 0.00 0.00 35.85 4.08
1445 1567 1.830587 ATCGTGCTCTGCCCAAGACA 61.831 55.000 0.00 0.00 0.00 3.41
1556 1717 0.107459 GAAAGCCAGGCCTGAGGTAG 60.107 60.000 34.91 17.77 0.00 3.18
1561 1728 2.347490 GTCGAAAGCCAGGCCTGA 59.653 61.111 34.91 9.41 0.00 3.86
1645 1820 2.096174 GCGACGAGTAGATGTTCACTCT 59.904 50.000 0.00 0.00 39.23 3.24
1686 1861 1.846124 AACCATCCCACTGTCCCGT 60.846 57.895 0.00 0.00 0.00 5.28
1950 4048 1.651240 CCTTGAGCCACCAGATTGCG 61.651 60.000 0.00 0.00 0.00 4.85
1954 4052 0.467384 CGATCCTTGAGCCACCAGAT 59.533 55.000 0.00 0.00 0.00 2.90
1995 4097 1.753930 TGATGCTGGTGGTATGCTTG 58.246 50.000 0.00 0.00 0.00 4.01
2294 4403 9.061610 CGAATTAGTACAATGACAAATTGTTCC 57.938 33.333 8.83 1.86 41.81 3.62
2370 4479 0.537371 CCGAACAGGAAACCAAGCCT 60.537 55.000 0.00 0.00 45.00 4.58
2656 4782 8.723942 AAGACCAATACTGAATGAATACAGTC 57.276 34.615 0.00 0.00 44.59 3.51
2738 4866 8.703604 TGTACTGAATTCATTAGCTACAGAAC 57.296 34.615 8.96 0.00 0.00 3.01
2773 4908 3.185594 CGTGATTTCTCTGCGGTTAACAA 59.814 43.478 8.10 0.00 0.00 2.83
2782 4917 6.257849 TGGACATTATAACGTGATTTCTCTGC 59.742 38.462 0.00 0.00 0.00 4.26
2981 5129 6.183361 ACAAGCCTATATGTTATGGCCACTAA 60.183 38.462 8.16 5.50 45.94 2.24
3028 5593 5.007724 GCTGTTAAGTTAAGAGTGCACAACT 59.992 40.000 21.04 16.42 43.85 3.16
3150 5715 8.915057 ATATAATTTTGGAGTCTGGTCATCTG 57.085 34.615 0.00 0.00 0.00 2.90
3151 5716 8.717717 TGATATAATTTTGGAGTCTGGTCATCT 58.282 33.333 0.00 0.00 0.00 2.90
3152 5717 8.908786 TGATATAATTTTGGAGTCTGGTCATC 57.091 34.615 0.00 0.00 0.00 2.92
3153 5718 9.699410 TTTGATATAATTTTGGAGTCTGGTCAT 57.301 29.630 0.00 0.00 0.00 3.06
3154 5719 9.527157 TTTTGATATAATTTTGGAGTCTGGTCA 57.473 29.630 0.00 0.00 0.00 4.02
3196 5762 5.846203 AGTTAATGCACAGCAAGAAATTGT 58.154 33.333 0.00 0.00 43.62 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.