Multiple sequence alignment - TraesCS7A01G025100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G025100 chr7A 100.000 2778 0 0 1 2778 9996063 9998840 0.000000e+00 5131.0
1 TraesCS7A01G025100 chr7A 85.177 877 86 29 753 1624 10016708 10017545 0.000000e+00 859.0
2 TraesCS7A01G025100 chr7A 93.947 380 21 2 343 721 733031440 733031062 8.630000e-160 573.0
3 TraesCS7A01G025100 chr7A 81.293 588 93 14 136 716 80318014 80318591 7.010000e-126 460.0
4 TraesCS7A01G025100 chr7A 93.644 236 15 0 112 347 733040404 733040169 1.220000e-93 353.0
5 TraesCS7A01G025100 chr7A 81.716 443 57 17 1175 1599 9720290 9719854 5.690000e-92 348.0
6 TraesCS7A01G025100 chr7A 74.086 602 113 29 135 716 700523930 700524508 1.010000e-49 207.0
7 TraesCS7A01G025100 chr7A 75.264 473 78 19 1714 2178 10017710 10018151 3.650000e-44 189.0
8 TraesCS7A01G025100 chr7A 88.889 72 6 2 1 71 19449971 19449901 1.370000e-13 87.9
9 TraesCS7A01G025100 chr4A 91.692 975 66 6 719 1686 727842574 727841608 0.000000e+00 1338.0
10 TraesCS7A01G025100 chr4A 87.783 663 57 11 1978 2618 727799862 727799202 0.000000e+00 754.0
11 TraesCS7A01G025100 chr4A 80.124 483 62 20 1140 1599 728129456 728129927 2.060000e-86 329.0
12 TraesCS7A01G025100 chr4A 79.916 478 67 18 1142 1618 727746292 727745843 9.600000e-85 324.0
13 TraesCS7A01G025100 chr4A 82.000 400 45 13 2014 2395 727745100 727744710 5.780000e-82 315.0
14 TraesCS7A01G025100 chr4A 92.273 220 17 0 1471 1690 727804170 727803951 2.080000e-81 313.0
15 TraesCS7A01G025100 chr4A 76.545 550 100 16 1120 1654 731076037 731075502 9.800000e-70 274.0
16 TraesCS7A01G025100 chr4A 76.515 528 81 27 1178 1690 730577549 730578048 5.940000e-62 248.0
17 TraesCS7A01G025100 chr4A 88.780 205 16 1 1714 1918 727803954 727803757 7.690000e-61 244.0
18 TraesCS7A01G025100 chr4A 76.371 529 82 27 1177 1690 730524229 730524729 7.690000e-61 244.0
19 TraesCS7A01G025100 chr4A 75.285 526 98 17 1175 1690 729308216 729307713 3.600000e-54 222.0
20 TraesCS7A01G025100 chr4A 84.962 133 20 0 2628 2760 727799149 727799017 4.830000e-28 135.0
21 TraesCS7A01G025100 chr7D 88.493 982 79 18 716 1686 10804093 10805051 0.000000e+00 1157.0
22 TraesCS7A01G025100 chr7D 85.354 990 99 12 720 1696 22477951 22476995 0.000000e+00 983.0
23 TraesCS7A01G025100 chr7D 80.737 597 93 17 130 715 431250572 431249987 1.960000e-121 446.0
24 TraesCS7A01G025100 chr7D 80.466 558 80 16 1140 1696 10810418 10810947 1.550000e-107 399.0
25 TraesCS7A01G025100 chr7D 80.252 476 66 16 1138 1599 10595094 10594633 1.590000e-87 333.0
26 TraesCS7A01G025100 chr7D 79.907 428 70 12 1179 1598 10568736 10568317 1.620000e-77 300.0
27 TraesCS7A01G025100 chr7D 77.030 505 69 22 1903 2395 10812065 10812534 2.140000e-61 246.0
28 TraesCS7A01G025100 chr7D 84.483 232 35 1 2398 2628 15199717 15199486 7.740000e-56 228.0
29 TraesCS7A01G025100 chr7D 91.667 72 4 2 1 71 18966041 18965971 6.330000e-17 99.0
30 TraesCS7A01G025100 chr6A 94.224 606 31 3 112 715 94188869 94189472 0.000000e+00 922.0
31 TraesCS7A01G025100 chr7B 88.967 426 39 2 291 716 578753779 578754196 1.140000e-143 520.0
32 TraesCS7A01G025100 chr7B 81.122 588 95 10 137 717 721312160 721311582 9.070000e-125 457.0
33 TraesCS7A01G025100 chr7B 89.041 73 6 2 4 75 63742471 63742400 3.810000e-14 89.8
34 TraesCS7A01G025100 chr1B 81.741 586 93 11 137 715 39989809 39989231 6.960000e-131 477.0
35 TraesCS7A01G025100 chr1B 88.764 89 6 4 1 87 41855057 41855143 3.780000e-19 106.0
36 TraesCS7A01G025100 chr1B 93.151 73 3 2 1 72 145579621 145579550 3.780000e-19 106.0
37 TraesCS7A01G025100 chrUn 80.801 599 94 15 130 718 45537719 45538306 1.520000e-122 449.0
38 TraesCS7A01G025100 chrUn 81.818 209 37 1 2421 2628 51020323 51020531 1.020000e-39 174.0
39 TraesCS7A01G025100 chrUn 81.818 209 37 1 2421 2628 337822431 337822639 1.020000e-39 174.0
40 TraesCS7A01G025100 chrUn 81.818 209 37 1 2421 2628 370149424 370149632 1.020000e-39 174.0
41 TraesCS7A01G025100 chr1A 80.815 589 99 11 134 717 423987825 423988404 1.520000e-122 449.0
42 TraesCS7A01G025100 chr4D 85.778 225 24 5 2405 2628 372188754 372188971 5.980000e-57 231.0
43 TraesCS7A01G025100 chr5A 94.118 68 4 0 6 73 585399534 585399467 1.360000e-18 104.0
44 TraesCS7A01G025100 chr6D 91.429 70 4 2 4 72 267060767 267060699 8.190000e-16 95.3
45 TraesCS7A01G025100 chr3A 92.727 55 3 1 16 69 429466848 429466902 8.250000e-11 78.7
46 TraesCS7A01G025100 chr3D 78.947 114 21 1 2394 2504 32587644 32587757 1.070000e-09 75.0
47 TraesCS7A01G025100 chr1D 82.051 78 10 4 4 79 426618168 426618093 2.310000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G025100 chr7A 9996063 9998840 2777 False 5131.0 5131 100.0000 1 2778 1 chr7A.!!$F1 2777
1 TraesCS7A01G025100 chr7A 10016708 10018151 1443 False 524.0 859 80.2205 753 2178 2 chr7A.!!$F4 1425
2 TraesCS7A01G025100 chr7A 80318014 80318591 577 False 460.0 460 81.2930 136 716 1 chr7A.!!$F2 580
3 TraesCS7A01G025100 chr7A 700523930 700524508 578 False 207.0 207 74.0860 135 716 1 chr7A.!!$F3 581
4 TraesCS7A01G025100 chr4A 727841608 727842574 966 True 1338.0 1338 91.6920 719 1686 1 chr4A.!!$R1 967
5 TraesCS7A01G025100 chr4A 727799017 727804170 5153 True 361.5 754 88.4495 1471 2760 4 chr4A.!!$R5 1289
6 TraesCS7A01G025100 chr4A 727744710 727746292 1582 True 319.5 324 80.9580 1142 2395 2 chr4A.!!$R4 1253
7 TraesCS7A01G025100 chr4A 731075502 731076037 535 True 274.0 274 76.5450 1120 1654 1 chr4A.!!$R3 534
8 TraesCS7A01G025100 chr4A 730524229 730524729 500 False 244.0 244 76.3710 1177 1690 1 chr4A.!!$F2 513
9 TraesCS7A01G025100 chr4A 729307713 729308216 503 True 222.0 222 75.2850 1175 1690 1 chr4A.!!$R2 515
10 TraesCS7A01G025100 chr7D 10804093 10805051 958 False 1157.0 1157 88.4930 716 1686 1 chr7D.!!$F1 970
11 TraesCS7A01G025100 chr7D 22476995 22477951 956 True 983.0 983 85.3540 720 1696 1 chr7D.!!$R5 976
12 TraesCS7A01G025100 chr7D 431249987 431250572 585 True 446.0 446 80.7370 130 715 1 chr7D.!!$R6 585
13 TraesCS7A01G025100 chr7D 10810418 10812534 2116 False 322.5 399 78.7480 1140 2395 2 chr7D.!!$F2 1255
14 TraesCS7A01G025100 chr6A 94188869 94189472 603 False 922.0 922 94.2240 112 715 1 chr6A.!!$F1 603
15 TraesCS7A01G025100 chr7B 721311582 721312160 578 True 457.0 457 81.1220 137 717 1 chr7B.!!$R2 580
16 TraesCS7A01G025100 chr1B 39989231 39989809 578 True 477.0 477 81.7410 137 715 1 chr1B.!!$R1 578
17 TraesCS7A01G025100 chrUn 45537719 45538306 587 False 449.0 449 80.8010 130 718 1 chrUn.!!$F1 588
18 TraesCS7A01G025100 chr1A 423987825 423988404 579 False 449.0 449 80.8150 134 717 1 chr1A.!!$F1 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
964 1004 0.389948 CCCGTCCTGTAGCTCACAAC 60.39 60.0 0.0 0.0 36.48 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1782 1962 0.031111 AATCCCCATCTCCGAGGACA 60.031 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 9.853177 TTTAAAATTTCAAAATAAAGGGCTCCA 57.147 25.926 0.00 0.00 0.00 3.86
43 44 7.926674 AAATTTCAAAATAAAGGGCTCCATG 57.073 32.000 0.00 0.00 0.00 3.66
44 45 5.419239 TTTCAAAATAAAGGGCTCCATGG 57.581 39.130 4.97 4.97 0.00 3.66
45 46 4.329638 TCAAAATAAAGGGCTCCATGGA 57.670 40.909 15.27 15.27 0.00 3.41
46 47 4.280819 TCAAAATAAAGGGCTCCATGGAG 58.719 43.478 33.73 33.73 44.56 3.86
54 55 3.160047 CTCCATGGAGCTCGGCCT 61.160 66.667 28.45 0.00 35.31 5.19
55 56 3.157252 TCCATGGAGCTCGGCCTC 61.157 66.667 11.44 0.00 0.00 4.70
62 63 3.297391 GAGCTCGGCCTCCATTTAG 57.703 57.895 0.00 0.00 0.00 1.85
63 64 0.882484 GAGCTCGGCCTCCATTTAGC 60.882 60.000 0.00 0.00 0.00 3.09
64 65 1.153168 GCTCGGCCTCCATTTAGCA 60.153 57.895 0.00 0.00 0.00 3.49
65 66 0.536006 GCTCGGCCTCCATTTAGCAT 60.536 55.000 0.00 0.00 0.00 3.79
66 67 1.972872 CTCGGCCTCCATTTAGCATT 58.027 50.000 0.00 0.00 0.00 3.56
67 68 2.301346 CTCGGCCTCCATTTAGCATTT 58.699 47.619 0.00 0.00 0.00 2.32
68 69 2.689983 CTCGGCCTCCATTTAGCATTTT 59.310 45.455 0.00 0.00 0.00 1.82
69 70 2.687935 TCGGCCTCCATTTAGCATTTTC 59.312 45.455 0.00 0.00 0.00 2.29
70 71 2.541588 CGGCCTCCATTTAGCATTTTCG 60.542 50.000 0.00 0.00 0.00 3.46
71 72 2.463876 GCCTCCATTTAGCATTTTCGC 58.536 47.619 0.00 0.00 0.00 4.70
72 73 2.099756 GCCTCCATTTAGCATTTTCGCT 59.900 45.455 0.00 0.00 46.26 4.93
73 74 3.315191 GCCTCCATTTAGCATTTTCGCTA 59.685 43.478 0.00 0.00 43.56 4.26
74 75 4.789802 GCCTCCATTTAGCATTTTCGCTAC 60.790 45.833 0.00 0.00 44.03 3.58
75 76 4.576463 CCTCCATTTAGCATTTTCGCTACT 59.424 41.667 0.00 0.00 44.03 2.57
76 77 5.066505 CCTCCATTTAGCATTTTCGCTACTT 59.933 40.000 0.00 0.00 44.03 2.24
77 78 6.404734 CCTCCATTTAGCATTTTCGCTACTTT 60.405 38.462 0.00 0.00 44.03 2.66
78 79 6.919721 TCCATTTAGCATTTTCGCTACTTTT 58.080 32.000 0.00 0.00 44.03 2.27
79 80 6.806249 TCCATTTAGCATTTTCGCTACTTTTG 59.194 34.615 0.00 0.00 44.03 2.44
80 81 6.806249 CCATTTAGCATTTTCGCTACTTTTGA 59.194 34.615 0.00 0.00 44.03 2.69
81 82 7.328249 CCATTTAGCATTTTCGCTACTTTTGAA 59.672 33.333 0.00 0.00 44.03 2.69
82 83 7.851822 TTTAGCATTTTCGCTACTTTTGAAG 57.148 32.000 0.00 0.00 44.03 3.02
83 84 5.438761 AGCATTTTCGCTACTTTTGAAGT 57.561 34.783 0.00 0.00 41.55 3.01
84 85 5.831997 AGCATTTTCGCTACTTTTGAAGTT 58.168 33.333 0.00 0.00 41.55 2.66
85 86 6.966021 AGCATTTTCGCTACTTTTGAAGTTA 58.034 32.000 0.00 0.00 41.55 2.24
86 87 6.856426 AGCATTTTCGCTACTTTTGAAGTTAC 59.144 34.615 0.00 0.00 41.55 2.50
87 88 6.856426 GCATTTTCGCTACTTTTGAAGTTACT 59.144 34.615 0.00 0.00 42.81 2.24
88 89 7.059602 GCATTTTCGCTACTTTTGAAGTTACTC 59.940 37.037 0.00 0.00 42.81 2.59
89 90 7.542534 TTTTCGCTACTTTTGAAGTTACTCA 57.457 32.000 0.00 0.00 42.81 3.41
90 91 6.520792 TTCGCTACTTTTGAAGTTACTCAC 57.479 37.500 0.00 0.00 42.81 3.51
91 92 5.839621 TCGCTACTTTTGAAGTTACTCACT 58.160 37.500 0.00 0.00 42.81 3.41
92 93 6.973843 TCGCTACTTTTGAAGTTACTCACTA 58.026 36.000 0.00 0.00 42.81 2.74
93 94 7.600065 TCGCTACTTTTGAAGTTACTCACTAT 58.400 34.615 0.00 0.00 42.81 2.12
94 95 7.541091 TCGCTACTTTTGAAGTTACTCACTATG 59.459 37.037 0.00 0.00 42.81 2.23
95 96 7.201444 CGCTACTTTTGAAGTTACTCACTATGG 60.201 40.741 0.00 0.00 42.81 2.74
96 97 6.803154 ACTTTTGAAGTTACTCACTATGGC 57.197 37.500 0.00 0.00 39.04 4.40
97 98 6.534634 ACTTTTGAAGTTACTCACTATGGCT 58.465 36.000 0.00 0.00 39.04 4.75
98 99 7.676947 ACTTTTGAAGTTACTCACTATGGCTA 58.323 34.615 0.00 0.00 39.04 3.93
99 100 7.819900 ACTTTTGAAGTTACTCACTATGGCTAG 59.180 37.037 0.00 0.00 39.04 3.42
100 101 6.852420 TTGAAGTTACTCACTATGGCTAGT 57.148 37.500 0.00 0.00 38.79 2.57
101 102 7.949690 TTGAAGTTACTCACTATGGCTAGTA 57.050 36.000 0.00 0.00 35.99 1.82
102 103 8.534954 TTGAAGTTACTCACTATGGCTAGTAT 57.465 34.615 0.00 0.00 35.99 2.12
103 104 9.636789 TTGAAGTTACTCACTATGGCTAGTATA 57.363 33.333 0.00 0.00 35.99 1.47
104 105 9.286170 TGAAGTTACTCACTATGGCTAGTATAG 57.714 37.037 12.04 12.04 35.99 1.31
105 106 9.504708 GAAGTTACTCACTATGGCTAGTATAGA 57.495 37.037 17.59 2.46 36.01 1.98
106 107 8.851541 AGTTACTCACTATGGCTAGTATAGAC 57.148 38.462 17.59 8.27 40.17 2.59
107 108 7.603404 AGTTACTCACTATGGCTAGTATAGACG 59.397 40.741 17.59 10.87 42.01 4.18
219 223 2.239400 GCTTTTTGAGTACCTGGCCTT 58.761 47.619 3.32 0.00 0.00 4.35
230 234 2.528127 TGGCCTTGAGTTCCGGGA 60.528 61.111 3.32 0.00 0.00 5.14
313 322 1.614903 CCTTGTTGAAGGCATTGCTCA 59.385 47.619 8.82 2.43 42.60 4.26
339 349 1.535444 TCGGGCTGGTTCTTCAGGA 60.535 57.895 0.00 0.00 35.43 3.86
370 381 9.613428 AACCTAAAATCTGATCGTTGATGATTA 57.387 29.630 0.00 0.00 0.00 1.75
371 382 9.784531 ACCTAAAATCTGATCGTTGATGATTAT 57.215 29.630 0.00 0.00 0.00 1.28
521 539 6.204688 GTGAATTTGATCCCTTTGGGTTTTTC 59.795 38.462 2.25 1.11 44.74 2.29
522 540 6.101005 TGAATTTGATCCCTTTGGGTTTTTCT 59.899 34.615 2.25 0.00 44.74 2.52
625 651 0.804989 GTTGGCTGTGTGCATCCTAC 59.195 55.000 0.00 0.00 45.15 3.18
750 778 1.001633 GTCAAAGGAGGAGTAACGGCA 59.998 52.381 0.00 0.00 0.00 5.69
757 785 1.476891 GAGGAGTAACGGCATGAGTCA 59.523 52.381 0.00 0.00 0.00 3.41
908 936 2.948979 CAGTTAGCCTGTGTTTGTCCAA 59.051 45.455 0.00 0.00 36.37 3.53
909 937 3.569701 CAGTTAGCCTGTGTTTGTCCAAT 59.430 43.478 0.00 0.00 36.37 3.16
911 939 0.675633 AGCCTGTGTTTGTCCAATGC 59.324 50.000 0.00 0.00 0.00 3.56
964 1004 0.389948 CCCGTCCTGTAGCTCACAAC 60.390 60.000 0.00 0.00 36.48 3.32
1036 1077 2.162681 GAGGTAGCTTTGTGTGCCATT 58.837 47.619 0.00 0.00 0.00 3.16
1064 1105 4.158764 GCCACTCAGCTTTCTCTAACTCTA 59.841 45.833 0.00 0.00 0.00 2.43
1072 1113 7.121463 TCAGCTTTCTCTAACTCTACTCGATTT 59.879 37.037 0.00 0.00 0.00 2.17
1075 1116 6.452494 TTCTCTAACTCTACTCGATTTGGG 57.548 41.667 0.00 0.00 0.00 4.12
1078 1119 5.443283 TCTAACTCTACTCGATTTGGGCTA 58.557 41.667 0.00 0.00 0.00 3.93
1080 1128 3.633418 ACTCTACTCGATTTGGGCTACT 58.367 45.455 0.00 0.00 0.00 2.57
1081 1129 4.024670 ACTCTACTCGATTTGGGCTACTT 58.975 43.478 0.00 0.00 0.00 2.24
1107 1155 4.082125 TGCCAAAGGATTCTTCTTCTTCC 58.918 43.478 0.00 0.00 31.82 3.46
1188 1243 3.884774 TGCGAGGTGCCCAGGTTT 61.885 61.111 0.00 0.00 45.60 3.27
1216 1271 2.676822 TCGTCTTCCTGCTCGCCT 60.677 61.111 0.00 0.00 0.00 5.52
1285 1349 1.737008 GACGACGACCCCAGCTTTC 60.737 63.158 0.00 0.00 0.00 2.62
1445 1532 2.657102 GAAGATCTGCTGCTCCCGGG 62.657 65.000 16.85 16.85 0.00 5.73
1638 1737 2.505982 CCGGCGTCATGATTCCCT 59.494 61.111 6.01 0.00 0.00 4.20
1709 1858 2.093921 AGGTTGTTTTCGGTTGGGTTTG 60.094 45.455 0.00 0.00 0.00 2.93
1712 1861 3.779271 TGTTTTCGGTTGGGTTTGTAC 57.221 42.857 0.00 0.00 0.00 2.90
1716 1865 0.033781 TCGGTTGGGTTTGTACGGAG 59.966 55.000 0.00 0.00 0.00 4.63
1723 1902 1.276989 GGGTTTGTACGGAGACCATGA 59.723 52.381 0.00 0.00 33.81 3.07
1782 1962 9.401058 CCTCCTTTTGAGAGTTATCACAATAAT 57.599 33.333 0.00 0.00 44.42 1.28
1791 1971 6.323996 AGAGTTATCACAATAATGTCCTCGGA 59.676 38.462 0.00 0.00 37.82 4.55
1815 2005 3.109151 TGGGGATTAGAAGCTTCGGTTA 58.891 45.455 20.43 5.34 0.00 2.85
1816 2006 3.714798 TGGGGATTAGAAGCTTCGGTTAT 59.285 43.478 20.43 12.09 0.00 1.89
1817 2007 4.165372 TGGGGATTAGAAGCTTCGGTTATT 59.835 41.667 20.43 4.87 0.00 1.40
1818 2008 5.131067 GGGGATTAGAAGCTTCGGTTATTT 58.869 41.667 20.43 4.13 0.00 1.40
1819 2009 5.593095 GGGGATTAGAAGCTTCGGTTATTTT 59.407 40.000 20.43 3.39 0.00 1.82
1820 2010 6.459710 GGGGATTAGAAGCTTCGGTTATTTTG 60.460 42.308 20.43 0.00 0.00 2.44
1821 2011 6.459710 GGGATTAGAAGCTTCGGTTATTTTGG 60.460 42.308 20.43 0.00 0.00 3.28
1837 2027 8.720562 GGTTATTTTGGAATTTGGATTTCACTG 58.279 33.333 0.00 0.00 30.37 3.66
1918 2971 8.997323 GTTTACATGAAGATAGAGGGATGAATG 58.003 37.037 0.00 0.00 0.00 2.67
1978 3035 6.494952 TCCCTCTACTCACTTTTAGTCTCAT 58.505 40.000 0.00 0.00 0.00 2.90
1981 6846 8.750298 CCCTCTACTCACTTTTAGTCTCATTTA 58.250 37.037 0.00 0.00 0.00 1.40
2027 7230 9.844790 CAATACATCTGTAAAAAGATTTCAGCA 57.155 29.630 0.00 0.00 34.60 4.41
2079 7285 0.413434 CCTCAGGGGGTTTGGGAATT 59.587 55.000 0.00 0.00 0.00 2.17
2088 7294 5.042979 AGGGGGTTTGGGAATTGTTCATATA 60.043 40.000 0.00 0.00 0.00 0.86
2195 7401 6.721571 TGCTAATTCTTAAGTCCAAACTCG 57.278 37.500 1.63 0.00 33.48 4.18
2269 7475 9.952030 TGTATGTACAATAATTCAAGTTGAGGA 57.048 29.630 5.56 0.00 32.40 3.71
2407 7629 5.013704 TGGGCTAATACTTCCTCAAAACAGA 59.986 40.000 0.00 0.00 0.00 3.41
2412 7634 2.484889 ACTTCCTCAAAACAGACTCGC 58.515 47.619 0.00 0.00 0.00 5.03
2413 7635 2.158957 ACTTCCTCAAAACAGACTCGCA 60.159 45.455 0.00 0.00 0.00 5.10
2414 7636 1.865865 TCCTCAAAACAGACTCGCAC 58.134 50.000 0.00 0.00 0.00 5.34
2419 7641 0.110486 AAAACAGACTCGCACCCCAT 59.890 50.000 0.00 0.00 0.00 4.00
2420 7642 0.110486 AAACAGACTCGCACCCCATT 59.890 50.000 0.00 0.00 0.00 3.16
2469 7691 2.730382 TGGCCTAACGATACAGAGTGA 58.270 47.619 3.32 0.00 0.00 3.41
2496 7718 4.395231 GGTAGCCCTCTTACACAACAAATC 59.605 45.833 0.00 0.00 0.00 2.17
2512 7734 4.282496 ACAAATCCTGAGATCTCGGTACT 58.718 43.478 26.31 10.54 34.20 2.73
2513 7735 5.446860 ACAAATCCTGAGATCTCGGTACTA 58.553 41.667 26.31 11.88 34.20 1.82
2516 7738 2.433604 TCCTGAGATCTCGGTACTACGT 59.566 50.000 26.31 0.00 34.20 3.57
2539 7761 2.983229 AGACTACGCTACCGAAGAAGA 58.017 47.619 0.00 0.00 38.29 2.87
2544 7766 2.673833 ACGCTACCGAAGAAGAACAAG 58.326 47.619 0.00 0.00 38.29 3.16
2547 7769 2.028385 GCTACCGAAGAAGAACAAGGGA 60.028 50.000 0.00 0.00 0.00 4.20
2566 7788 2.295349 GGAAGGTCAGAGTACAACGTCA 59.705 50.000 0.00 0.00 0.00 4.35
2576 7798 2.974935 TACAACGTCACGCCACACCC 62.975 60.000 0.00 0.00 0.00 4.61
2580 7802 2.434359 GTCACGCCACACCCTAGC 60.434 66.667 0.00 0.00 0.00 3.42
2601 7824 1.066858 ACACTAGGCTCCATGACAACG 60.067 52.381 0.00 0.00 0.00 4.10
2602 7825 0.108138 ACTAGGCTCCATGACAACGC 60.108 55.000 0.00 0.00 0.00 4.84
2607 7830 1.296392 CTCCATGACAACGCCCTCA 59.704 57.895 0.00 0.00 0.00 3.86
2622 7845 1.445095 CTCAGGAGGGAGAATGGCG 59.555 63.158 0.00 0.00 37.05 5.69
2623 7846 1.306141 TCAGGAGGGAGAATGGCGT 60.306 57.895 0.00 0.00 0.00 5.68
2641 7907 1.754803 CGTAGAGGAGCCCATACACAA 59.245 52.381 0.00 0.00 0.00 3.33
2648 7914 2.420687 GGAGCCCATACACAAAGAGGAG 60.421 54.545 0.00 0.00 0.00 3.69
2658 7924 3.278574 CACAAAGAGGAGAACCACAACA 58.721 45.455 0.00 0.00 38.94 3.33
2660 7926 3.694566 ACAAAGAGGAGAACCACAACAAC 59.305 43.478 0.00 0.00 38.94 3.32
2668 7934 2.936498 AGAACCACAACAACGTCTTCAG 59.064 45.455 0.00 0.00 0.00 3.02
2683 7949 0.102481 TTCAGGAAGATAGCGACGCC 59.898 55.000 17.79 0.58 0.00 5.68
2714 7980 1.819208 CCTCATCGGCGCCAAATCA 60.819 57.895 28.98 4.49 0.00 2.57
2716 7982 1.368345 CTCATCGGCGCCAAATCACA 61.368 55.000 28.98 1.43 0.00 3.58
2718 7984 1.377202 ATCGGCGCCAAATCACAGT 60.377 52.632 28.98 0.00 0.00 3.55
2720 7986 2.126346 GGCGCCAAATCACAGTGC 60.126 61.111 24.80 0.00 36.30 4.40
2760 8026 4.972568 ACCCATATCACACAGTTATACCCA 59.027 41.667 0.00 0.00 0.00 4.51
2761 8027 5.610982 ACCCATATCACACAGTTATACCCAT 59.389 40.000 0.00 0.00 0.00 4.00
2762 8028 5.939883 CCCATATCACACAGTTATACCCATG 59.060 44.000 0.00 0.00 0.00 3.66
2763 8029 6.239858 CCCATATCACACAGTTATACCCATGA 60.240 42.308 0.00 0.00 0.00 3.07
2764 8030 6.650807 CCATATCACACAGTTATACCCATGAC 59.349 42.308 0.00 0.00 0.00 3.06
2765 8031 4.118093 TCACACAGTTATACCCATGACG 57.882 45.455 0.00 0.00 0.00 4.35
2766 8032 3.764972 TCACACAGTTATACCCATGACGA 59.235 43.478 0.00 0.00 0.00 4.20
2767 8033 3.863424 CACACAGTTATACCCATGACGAC 59.137 47.826 0.00 0.00 0.00 4.34
2768 8034 3.512329 ACACAGTTATACCCATGACGACA 59.488 43.478 0.00 0.00 0.00 4.35
2769 8035 3.863424 CACAGTTATACCCATGACGACAC 59.137 47.826 0.00 0.00 0.00 3.67
2770 8036 3.767673 ACAGTTATACCCATGACGACACT 59.232 43.478 0.00 0.00 0.00 3.55
2771 8037 4.222145 ACAGTTATACCCATGACGACACTT 59.778 41.667 0.00 0.00 0.00 3.16
2772 8038 5.175859 CAGTTATACCCATGACGACACTTT 58.824 41.667 0.00 0.00 0.00 2.66
2773 8039 5.642063 CAGTTATACCCATGACGACACTTTT 59.358 40.000 0.00 0.00 0.00 2.27
2774 8040 5.873164 AGTTATACCCATGACGACACTTTTC 59.127 40.000 0.00 0.00 0.00 2.29
2775 8041 1.508632 ACCCATGACGACACTTTTCG 58.491 50.000 0.00 0.00 44.87 3.46
2776 8042 1.069513 ACCCATGACGACACTTTTCGA 59.930 47.619 0.00 0.00 41.78 3.71
2777 8043 1.459592 CCCATGACGACACTTTTCGAC 59.540 52.381 0.00 0.00 41.78 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 9.853177 TGGAGCCCTTTATTTTGAAATTTTAAA 57.147 25.926 4.15 4.15 0.00 1.52
17 18 9.447157 CATGGAGCCCTTTATTTTGAAATTTTA 57.553 29.630 0.00 0.00 0.00 1.52
18 19 7.394077 CCATGGAGCCCTTTATTTTGAAATTTT 59.606 33.333 5.56 0.00 0.00 1.82
19 20 6.885918 CCATGGAGCCCTTTATTTTGAAATTT 59.114 34.615 5.56 0.00 0.00 1.82
20 21 6.215227 TCCATGGAGCCCTTTATTTTGAAATT 59.785 34.615 11.44 0.00 0.00 1.82
21 22 5.725822 TCCATGGAGCCCTTTATTTTGAAAT 59.274 36.000 11.44 0.00 0.00 2.17
22 23 5.090139 TCCATGGAGCCCTTTATTTTGAAA 58.910 37.500 11.44 0.00 0.00 2.69
23 24 4.682563 TCCATGGAGCCCTTTATTTTGAA 58.317 39.130 11.44 0.00 0.00 2.69
24 25 4.280819 CTCCATGGAGCCCTTTATTTTGA 58.719 43.478 28.45 0.00 35.31 2.69
25 26 4.660789 CTCCATGGAGCCCTTTATTTTG 57.339 45.455 28.45 1.40 35.31 2.44
37 38 3.160047 AGGCCGAGCTCCATGGAG 61.160 66.667 33.73 33.73 44.56 3.86
38 39 3.157252 GAGGCCGAGCTCCATGGA 61.157 66.667 15.27 15.27 0.00 3.41
39 40 4.247380 GGAGGCCGAGCTCCATGG 62.247 72.222 4.97 4.97 39.45 3.66
40 41 3.473647 TGGAGGCCGAGCTCCATG 61.474 66.667 8.47 0.00 44.02 3.66
43 44 0.250081 CTAAATGGAGGCCGAGCTCC 60.250 60.000 8.47 0.00 40.05 4.70
44 45 0.882484 GCTAAATGGAGGCCGAGCTC 60.882 60.000 2.73 2.73 0.00 4.09
45 46 1.147153 GCTAAATGGAGGCCGAGCT 59.853 57.895 0.00 0.00 0.00 4.09
46 47 0.536006 ATGCTAAATGGAGGCCGAGC 60.536 55.000 0.00 0.00 0.00 5.03
47 48 1.972872 AATGCTAAATGGAGGCCGAG 58.027 50.000 0.00 0.00 0.00 4.63
48 49 2.435372 AAATGCTAAATGGAGGCCGA 57.565 45.000 0.00 0.00 0.00 5.54
49 50 2.541588 CGAAAATGCTAAATGGAGGCCG 60.542 50.000 0.00 0.00 0.00 6.13
50 51 2.799562 GCGAAAATGCTAAATGGAGGCC 60.800 50.000 0.00 0.00 0.00 5.19
51 52 2.099756 AGCGAAAATGCTAAATGGAGGC 59.900 45.455 0.00 0.00 45.14 4.70
60 61 6.554334 ACTTCAAAAGTAGCGAAAATGCTA 57.446 33.333 0.00 0.00 46.23 3.49
62 63 6.856426 AGTAACTTCAAAAGTAGCGAAAATGC 59.144 34.615 0.00 0.00 41.91 3.56
63 64 8.067784 TGAGTAACTTCAAAAGTAGCGAAAATG 58.932 33.333 0.00 0.00 41.91 2.32
64 65 8.068380 GTGAGTAACTTCAAAAGTAGCGAAAAT 58.932 33.333 0.00 0.00 41.91 1.82
65 66 7.279313 AGTGAGTAACTTCAAAAGTAGCGAAAA 59.721 33.333 0.00 0.00 41.91 2.29
66 67 6.759827 AGTGAGTAACTTCAAAAGTAGCGAAA 59.240 34.615 0.00 0.00 41.91 3.46
67 68 6.278363 AGTGAGTAACTTCAAAAGTAGCGAA 58.722 36.000 0.00 0.00 41.91 4.70
68 69 5.839621 AGTGAGTAACTTCAAAAGTAGCGA 58.160 37.500 0.00 0.00 41.91 4.93
69 70 7.201444 CCATAGTGAGTAACTTCAAAAGTAGCG 60.201 40.741 0.00 0.00 41.91 4.26
70 71 7.413109 GCCATAGTGAGTAACTTCAAAAGTAGC 60.413 40.741 0.00 0.00 41.91 3.58
71 72 7.819900 AGCCATAGTGAGTAACTTCAAAAGTAG 59.180 37.037 0.00 0.00 41.91 2.57
72 73 7.676947 AGCCATAGTGAGTAACTTCAAAAGTA 58.323 34.615 0.00 0.00 41.91 2.24
73 74 6.534634 AGCCATAGTGAGTAACTTCAAAAGT 58.465 36.000 0.00 0.00 45.46 2.66
74 75 7.819900 ACTAGCCATAGTGAGTAACTTCAAAAG 59.180 37.037 0.00 0.00 40.84 2.27
75 76 7.676947 ACTAGCCATAGTGAGTAACTTCAAAA 58.323 34.615 0.00 0.00 40.84 2.44
76 77 7.241042 ACTAGCCATAGTGAGTAACTTCAAA 57.759 36.000 0.00 0.00 40.84 2.69
77 78 6.852420 ACTAGCCATAGTGAGTAACTTCAA 57.148 37.500 0.00 0.00 40.84 2.69
78 79 9.286170 CTATACTAGCCATAGTGAGTAACTTCA 57.714 37.037 0.00 0.00 42.36 3.02
79 80 9.504708 TCTATACTAGCCATAGTGAGTAACTTC 57.495 37.037 10.31 0.00 42.36 3.01
80 81 9.287373 GTCTATACTAGCCATAGTGAGTAACTT 57.713 37.037 10.31 0.00 42.36 2.66
81 82 7.603404 CGTCTATACTAGCCATAGTGAGTAACT 59.397 40.741 10.31 0.00 42.36 2.24
82 83 7.148440 CCGTCTATACTAGCCATAGTGAGTAAC 60.148 44.444 10.31 2.50 42.36 2.50
83 84 6.877855 CCGTCTATACTAGCCATAGTGAGTAA 59.122 42.308 10.31 0.00 42.36 2.24
84 85 6.404708 CCGTCTATACTAGCCATAGTGAGTA 58.595 44.000 10.31 0.00 42.36 2.59
85 86 5.247084 CCGTCTATACTAGCCATAGTGAGT 58.753 45.833 10.31 0.00 42.36 3.41
86 87 4.636648 CCCGTCTATACTAGCCATAGTGAG 59.363 50.000 10.31 0.00 42.36 3.51
87 88 4.042560 ACCCGTCTATACTAGCCATAGTGA 59.957 45.833 10.31 0.00 42.36 3.41
88 89 4.333690 ACCCGTCTATACTAGCCATAGTG 58.666 47.826 10.31 6.16 42.36 2.74
89 90 4.654389 ACCCGTCTATACTAGCCATAGT 57.346 45.455 10.31 0.00 44.57 2.12
90 91 4.569966 CGTACCCGTCTATACTAGCCATAG 59.430 50.000 5.85 5.85 34.96 2.23
91 92 4.507710 CGTACCCGTCTATACTAGCCATA 58.492 47.826 0.00 0.00 0.00 2.74
92 93 3.341823 CGTACCCGTCTATACTAGCCAT 58.658 50.000 0.00 0.00 0.00 4.40
93 94 2.550855 CCGTACCCGTCTATACTAGCCA 60.551 54.545 0.00 0.00 0.00 4.75
94 95 2.079925 CCGTACCCGTCTATACTAGCC 58.920 57.143 0.00 0.00 0.00 3.93
95 96 1.466558 GCCGTACCCGTCTATACTAGC 59.533 57.143 0.00 0.00 0.00 3.42
96 97 1.728971 CGCCGTACCCGTCTATACTAG 59.271 57.143 0.00 0.00 0.00 2.57
97 98 1.608025 CCGCCGTACCCGTCTATACTA 60.608 57.143 0.74 0.00 0.00 1.82
98 99 0.886490 CCGCCGTACCCGTCTATACT 60.886 60.000 0.74 0.00 0.00 2.12
99 100 0.884704 TCCGCCGTACCCGTCTATAC 60.885 60.000 0.74 0.00 0.00 1.47
100 101 0.036732 ATCCGCCGTACCCGTCTATA 59.963 55.000 0.74 0.00 0.00 1.31
101 102 1.228367 ATCCGCCGTACCCGTCTAT 60.228 57.895 0.74 0.00 0.00 1.98
102 103 2.188829 CATCCGCCGTACCCGTCTA 61.189 63.158 0.74 0.00 0.00 2.59
103 104 3.524606 CATCCGCCGTACCCGTCT 61.525 66.667 0.74 0.00 0.00 4.18
104 105 4.580551 CCATCCGCCGTACCCGTC 62.581 72.222 0.74 0.00 0.00 4.79
106 107 3.668980 AAACCATCCGCCGTACCCG 62.669 63.158 0.00 0.00 0.00 5.28
107 108 2.110352 CAAACCATCCGCCGTACCC 61.110 63.158 0.00 0.00 0.00 3.69
108 109 0.108233 TACAAACCATCCGCCGTACC 60.108 55.000 0.00 0.00 0.00 3.34
109 110 1.394572 GTTACAAACCATCCGCCGTAC 59.605 52.381 0.00 0.00 0.00 3.67
110 111 1.724429 GTTACAAACCATCCGCCGTA 58.276 50.000 0.00 0.00 0.00 4.02
219 223 1.702957 AGGTTTTCATCCCGGAACTCA 59.297 47.619 0.73 0.00 0.00 3.41
230 234 4.035112 TCGGGTATGACCTAGGTTTTCAT 58.965 43.478 17.53 16.86 38.64 2.57
313 322 0.394565 GAACCAGCCCGAGCATATCT 59.605 55.000 0.00 0.00 43.56 1.98
339 349 8.335532 TCAACGATCAGATTTTAGGTTTTCAT 57.664 30.769 0.00 0.00 0.00 2.57
370 381 0.874607 GCGCTTTCGTCACCGGATAT 60.875 55.000 9.46 0.00 38.14 1.63
371 382 1.517694 GCGCTTTCGTCACCGGATA 60.518 57.895 9.46 0.00 38.14 2.59
556 576 6.372659 CGGCCAATAGCAAAGTCATATAAGAT 59.627 38.462 2.24 0.00 46.50 2.40
625 651 0.537188 ACACCCGGTCTCTGCATAAG 59.463 55.000 0.00 0.00 0.00 1.73
636 662 1.053424 ACAATGAGTACACACCCGGT 58.947 50.000 0.00 0.00 0.00 5.28
684 711 9.463902 TCGACAAAGGGTGGATTTTATTAATTA 57.536 29.630 0.00 0.00 28.37 1.40
686 713 7.948034 TCGACAAAGGGTGGATTTTATTAAT 57.052 32.000 0.00 0.00 28.37 1.40
750 778 4.479993 GCTGCCGGCCTGACTCAT 62.480 66.667 26.77 0.00 34.27 2.90
908 936 0.108615 GGAGACGTACTGCAGTGCAT 60.109 55.000 30.39 19.39 38.13 3.96
909 937 1.289066 GGAGACGTACTGCAGTGCA 59.711 57.895 30.39 18.58 36.93 4.57
964 1004 1.134175 GACAGAGGAAGGAGAAGAGCG 59.866 57.143 0.00 0.00 0.00 5.03
1036 1077 0.767375 AGAAAGCTGAGTGGCCTCAA 59.233 50.000 3.32 0.00 46.79 3.02
1048 1089 7.254852 CAAATCGAGTAGAGTTAGAGAAAGCT 58.745 38.462 0.00 0.00 34.60 3.74
1064 1105 3.914426 ATCAAGTAGCCCAAATCGAGT 57.086 42.857 0.00 0.00 0.00 4.18
1075 1116 4.400567 AGAATCCTTTGGCAATCAAGTAGC 59.599 41.667 0.00 0.00 36.62 3.58
1078 1119 5.082425 AGAAGAATCCTTTGGCAATCAAGT 58.918 37.500 0.00 0.00 36.62 3.16
1080 1128 5.776716 AGAAGAAGAATCCTTTGGCAATCAA 59.223 36.000 0.00 0.00 31.62 2.57
1081 1129 5.327732 AGAAGAAGAATCCTTTGGCAATCA 58.672 37.500 0.00 0.00 31.62 2.57
1093 1141 7.041721 GGAGAAGAAGAGGAAGAAGAAGAATC 58.958 42.308 0.00 0.00 0.00 2.52
1107 1155 2.017782 TCGATCGTGGGAGAAGAAGAG 58.982 52.381 15.94 0.00 0.00 2.85
1188 1243 2.558795 CAGGAAGACGAGGTTGAGAAGA 59.441 50.000 0.00 0.00 0.00 2.87
1277 1338 1.903404 GTGGGGTGGTGAAAGCTGG 60.903 63.158 0.00 0.00 33.76 4.85
1285 1349 2.656069 CGGAGGTAGTGGGGTGGTG 61.656 68.421 0.00 0.00 0.00 4.17
1638 1737 1.610363 TTATGCAAACAACAGCCGGA 58.390 45.000 5.05 0.00 0.00 5.14
1723 1902 2.961526 ATAATTCGACAGCTCACCGT 57.038 45.000 0.00 0.00 0.00 4.83
1750 1929 2.044946 CTCAAAAGGAGGGGCCGG 60.045 66.667 0.00 0.00 43.43 6.13
1782 1962 0.031111 AATCCCCATCTCCGAGGACA 60.031 55.000 0.00 0.00 0.00 4.02
1791 1971 2.370189 CCGAAGCTTCTAATCCCCATCT 59.630 50.000 23.50 0.00 0.00 2.90
1815 2005 8.212995 ACTTCAGTGAAATCCAAATTCCAAAAT 58.787 29.630 7.06 0.00 0.00 1.82
1816 2006 7.563906 ACTTCAGTGAAATCCAAATTCCAAAA 58.436 30.769 7.06 0.00 0.00 2.44
1817 2007 7.123355 ACTTCAGTGAAATCCAAATTCCAAA 57.877 32.000 7.06 0.00 0.00 3.28
1818 2008 6.729690 ACTTCAGTGAAATCCAAATTCCAA 57.270 33.333 7.06 0.00 0.00 3.53
1819 2009 7.831691 TTACTTCAGTGAAATCCAAATTCCA 57.168 32.000 7.06 0.00 0.00 3.53
1820 2010 9.710900 ATTTTACTTCAGTGAAATCCAAATTCC 57.289 29.630 7.06 0.00 39.14 3.01
1893 2085 8.717717 ACATTCATCCCTCTATCTTCATGTAAA 58.282 33.333 0.00 0.00 0.00 2.01
2041 7246 7.728981 CCCTGAGGGTGAGTAGTATAAAAGATA 59.271 40.741 10.09 0.00 38.25 1.98
2178 7384 4.041198 ACCATCCGAGTTTGGACTTAAGAA 59.959 41.667 10.09 0.00 41.85 2.52
2182 7388 3.833650 TGTACCATCCGAGTTTGGACTTA 59.166 43.478 0.00 0.00 41.85 2.24
2195 7401 0.748005 ATGCGGCAACTGTACCATCC 60.748 55.000 6.82 0.00 0.00 3.51
2352 7574 3.820467 TCCAGTCAACACATTTCCATGTC 59.180 43.478 0.00 0.00 42.14 3.06
2407 7629 4.706842 ATCTATAAAATGGGGTGCGAGT 57.293 40.909 0.00 0.00 0.00 4.18
2412 7634 8.006298 TGTTGCTTTATCTATAAAATGGGGTG 57.994 34.615 0.00 0.00 32.39 4.61
2413 7635 8.474831 GTTGTTGCTTTATCTATAAAATGGGGT 58.525 33.333 0.00 0.00 32.39 4.95
2414 7636 7.926018 GGTTGTTGCTTTATCTATAAAATGGGG 59.074 37.037 0.00 0.00 32.39 4.96
2449 7671 2.730382 TCACTCTGTATCGTTAGGCCA 58.270 47.619 5.01 0.00 0.00 5.36
2482 7704 6.035435 CGAGATCTCAGGATTTGTTGTGTAAG 59.965 42.308 22.31 0.00 31.46 2.34
2489 7711 4.712337 AGTACCGAGATCTCAGGATTTGTT 59.288 41.667 28.76 14.74 31.46 2.83
2491 7713 4.927978 AGTACCGAGATCTCAGGATTTG 57.072 45.455 28.76 11.23 31.46 2.32
2496 7718 2.836262 ACGTAGTACCGAGATCTCAGG 58.164 52.381 22.31 23.03 41.94 3.86
2512 7734 3.517602 TCGGTAGCGTAGTCTTTACGTA 58.482 45.455 14.79 0.00 42.35 3.57
2513 7735 2.346803 TCGGTAGCGTAGTCTTTACGT 58.653 47.619 14.79 0.00 42.35 3.57
2516 7738 4.937620 TCTTCTTCGGTAGCGTAGTCTTTA 59.062 41.667 18.45 0.00 0.00 1.85
2539 7761 3.314693 TGTACTCTGACCTTCCCTTGTT 58.685 45.455 0.00 0.00 0.00 2.83
2544 7766 1.617357 ACGTTGTACTCTGACCTTCCC 59.383 52.381 0.00 0.00 0.00 3.97
2547 7769 2.287427 CGTGACGTTGTACTCTGACCTT 60.287 50.000 0.00 0.00 0.00 3.50
2566 7788 3.238497 TGTGCTAGGGTGTGGCGT 61.238 61.111 0.00 0.00 34.70 5.68
2576 7798 2.034878 TCATGGAGCCTAGTGTGCTAG 58.965 52.381 0.00 0.00 43.26 3.42
2580 7802 2.350522 GTTGTCATGGAGCCTAGTGTG 58.649 52.381 0.00 0.00 0.00 3.82
2607 7830 0.261991 TCTACGCCATTCTCCCTCCT 59.738 55.000 0.00 0.00 0.00 3.69
2620 7843 0.032267 GTGTATGGGCTCCTCTACGC 59.968 60.000 0.00 0.00 0.00 4.42
2622 7845 3.451178 TCTTTGTGTATGGGCTCCTCTAC 59.549 47.826 0.00 0.00 0.00 2.59
2623 7846 3.706594 CTCTTTGTGTATGGGCTCCTCTA 59.293 47.826 0.00 0.00 0.00 2.43
2635 7901 4.080807 TGTTGTGGTTCTCCTCTTTGTGTA 60.081 41.667 0.00 0.00 34.23 2.90
2641 7907 2.093128 ACGTTGTTGTGGTTCTCCTCTT 60.093 45.455 0.00 0.00 34.23 2.85
2648 7914 2.031683 CCTGAAGACGTTGTTGTGGTTC 59.968 50.000 0.00 0.00 0.00 3.62
2668 7934 2.354773 CGGGCGTCGCTATCTTCC 60.355 66.667 18.11 7.53 0.00 3.46
2697 7963 1.353103 GTGATTTGGCGCCGATGAG 59.647 57.895 23.90 0.00 0.00 2.90
2703 7969 2.126346 GCACTGTGATTTGGCGCC 60.126 61.111 22.73 22.73 0.00 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.