Multiple sequence alignment - TraesCS7A01G024800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G024800 chr7A 100.000 3675 0 0 1 3675 9750973 9754647 0.000000e+00 6787.0
1 TraesCS7A01G024800 chr7D 93.859 3713 154 27 1 3675 10711180 10714856 0.000000e+00 5526.0
2 TraesCS7A01G024800 chr4A 92.379 1837 81 18 1456 3270 728089653 728087854 0.000000e+00 2562.0
3 TraesCS7A01G024800 chr4A 91.661 1451 80 23 1 1421 728091088 728089649 0.000000e+00 1971.0
4 TraesCS7A01G024800 chr4A 90.517 464 30 6 967 1421 728065014 728064556 5.250000e-168 601.0
5 TraesCS7A01G024800 chr4A 92.839 391 17 4 3296 3675 728087856 728087466 1.150000e-154 556.0
6 TraesCS7A01G024800 chr6A 90.476 63 6 0 1306 1368 3691403 3691465 2.350000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G024800 chr7A 9750973 9754647 3674 False 6787.000000 6787 100.000 1 3675 1 chr7A.!!$F1 3674
1 TraesCS7A01G024800 chr7D 10711180 10714856 3676 False 5526.000000 5526 93.859 1 3675 1 chr7D.!!$F1 3674
2 TraesCS7A01G024800 chr4A 728087466 728091088 3622 True 1696.333333 2562 92.293 1 3675 3 chr4A.!!$R2 3674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
762 773 0.179936 GGAGGAGATGCTTCCACCAG 59.82 60.0 11.84 0.0 44.62 4.00 F
1442 1476 0.240411 GTACAGCGACCCGGCTATAG 59.76 60.0 0.00 0.0 42.53 1.31 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1704 1751 0.109342 CCACCCTACATCCATGAGCC 59.891 60.0 0.0 0.0 0.0 4.70 R
3116 3181 1.226746 CTTCCCGTGCGAAAGTTCTT 58.773 50.0 0.0 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 6.153340 ACCATCCTAATTCCTGAACAATGTTG 59.847 38.462 2.20 0.00 0.00 3.33
71 72 4.860907 CCTGAACAATGTTGATTTGCTAGC 59.139 41.667 8.10 8.10 0.00 3.42
73 74 5.221880 TGAACAATGTTGATTTGCTAGCAC 58.778 37.500 19.17 6.92 0.00 4.40
200 201 2.736144 ACATCGTTACCGCTGAAAGA 57.264 45.000 0.00 0.00 34.45 2.52
211 212 0.318762 GCTGAAAGAGACGAGTGGGT 59.681 55.000 0.00 0.00 34.07 4.51
265 272 3.265995 ACCTCGGGGAATTTTATGTCACT 59.734 43.478 9.33 0.00 36.25 3.41
268 275 2.099098 CGGGGAATTTTATGTCACTGCC 59.901 50.000 0.00 0.00 0.00 4.85
288 296 1.133575 CCCGGTCTGGATCTACTACCA 60.134 57.143 0.00 0.00 42.00 3.25
329 337 2.890808 TCTTATTGCTGCGTCTAGGG 57.109 50.000 0.00 0.00 0.00 3.53
349 357 1.225426 CTAGCCTGGCATTGCTGGA 59.775 57.895 22.65 2.54 38.23 3.86
407 415 0.953471 GTGTAGTTCCGCCATGTGCA 60.953 55.000 6.92 0.00 41.33 4.57
443 451 2.975799 GACAACCCGCTTTCGCCA 60.976 61.111 0.00 0.00 0.00 5.69
451 459 1.709147 CCGCTTTCGCCATTCCTCTG 61.709 60.000 0.00 0.00 0.00 3.35
543 551 5.069781 GGAGCTTTCATACTAGGTGATCACT 59.930 44.000 24.50 13.31 0.00 3.41
596 604 0.686441 ATTGGATCGGACGGGACAGA 60.686 55.000 0.00 0.00 0.00 3.41
678 689 0.771127 TTGTAGCCCAAACAGGAGCT 59.229 50.000 0.00 0.00 43.52 4.09
687 698 1.410153 CAAACAGGAGCTTGCCAAACT 59.590 47.619 0.00 0.00 0.00 2.66
692 703 1.576421 GAGCTTGCCAAACTCACCG 59.424 57.895 3.02 0.00 0.00 4.94
704 715 1.967319 ACTCACCGAAGTGTGCAAAT 58.033 45.000 0.00 0.00 44.83 2.32
731 742 2.549754 AGTCTTTTCCACTGTCATTGCG 59.450 45.455 0.00 0.00 0.00 4.85
762 773 0.179936 GGAGGAGATGCTTCCACCAG 59.820 60.000 11.84 0.00 44.62 4.00
769 782 2.887152 AGATGCTTCCACCAGTCAAAAC 59.113 45.455 0.00 0.00 0.00 2.43
777 790 4.277476 TCCACCAGTCAAAACATCTTTGT 58.723 39.130 0.00 0.00 37.82 2.83
786 799 5.971202 GTCAAAACATCTTTGTGATTCGTGT 59.029 36.000 0.00 0.00 35.83 4.49
868 882 6.797033 GCCAATAAGTAATCGCATTATGTGTC 59.203 38.462 5.63 0.00 0.00 3.67
874 888 4.818534 AATCGCATTATGTGTCATCACC 57.181 40.909 5.63 0.00 43.26 4.02
909 923 3.773560 TGGAGGGTAAAAGGGTCATTTG 58.226 45.455 0.00 0.00 0.00 2.32
922 936 2.627945 GTCATTTGTGCGTATCCTCCA 58.372 47.619 0.00 0.00 0.00 3.86
942 956 7.280876 TCCTCCATGACATCTCTTTAATTTTCG 59.719 37.037 0.00 0.00 0.00 3.46
948 962 6.374333 TGACATCTCTTTAATTTTCGGAAGGG 59.626 38.462 0.00 0.00 0.00 3.95
964 978 2.249309 AGGGTCTCCGTCTGGTAAAT 57.751 50.000 0.00 0.00 38.33 1.40
991 1005 5.897250 TGCCTATAAGTAGTCCATGACAAGA 59.103 40.000 0.00 0.00 34.60 3.02
993 1007 6.265649 GCCTATAAGTAGTCCATGACAAGAGA 59.734 42.308 0.00 0.00 34.60 3.10
1014 1028 7.512130 AGAGAATCATCATGGCAATACAAGTA 58.488 34.615 0.00 0.00 37.82 2.24
1039 1061 2.291465 GTGTGTCAAAGATTCAGCAGCA 59.709 45.455 0.00 0.00 0.00 4.41
1083 1105 2.009774 GATGAGTGGAAACCGGTGATG 58.990 52.381 8.52 0.00 0.00 3.07
1296 1327 9.368674 CAGAACTTATCCTAGAATATGATGCTG 57.631 37.037 0.00 0.00 28.72 4.41
1347 1381 1.193323 AGCTCACACTGGAGATCCTG 58.807 55.000 4.36 4.36 37.05 3.86
1403 1437 3.305950 GGTTGGCAAACATAGCATCACAA 60.306 43.478 11.10 0.00 38.10 3.33
1428 1462 9.823647 AACAATCACTTCCTCATATTAGTACAG 57.176 33.333 0.00 0.00 0.00 2.74
1430 1464 6.073327 TCACTTCCTCATATTAGTACAGCG 57.927 41.667 0.00 0.00 0.00 5.18
1437 1471 0.670162 TATTAGTACAGCGACCCGGC 59.330 55.000 0.00 0.00 0.00 6.13
1442 1476 0.240411 GTACAGCGACCCGGCTATAG 59.760 60.000 0.00 0.00 42.53 1.31
1447 1481 1.014564 GCGACCCGGCTATAGAATGC 61.015 60.000 3.21 0.00 0.00 3.56
1467 1501 2.743126 GCTCTGCCAGATATGATTCTGC 59.257 50.000 0.00 0.00 41.50 4.26
1504 1543 2.507407 TTTCCTCCCATTTTAGCGCT 57.493 45.000 17.26 17.26 0.00 5.92
1549 1588 2.667318 CGGGCTGCAGTACACAACG 61.667 63.158 16.64 6.05 0.00 4.10
1591 1630 1.673665 CAACCTGGCTCCTGTGCTC 60.674 63.158 0.00 0.00 0.00 4.26
1606 1645 0.610174 TGCTCACTTTCCTCATCGCT 59.390 50.000 0.00 0.00 0.00 4.93
1616 1655 0.809241 CCTCATCGCTGTCTTGCTCC 60.809 60.000 0.00 0.00 0.00 4.70
1630 1669 2.534019 GCTCCGGTGTGTGTGTGTG 61.534 63.158 0.00 0.00 0.00 3.82
1633 1672 3.935872 CGGTGTGTGTGTGTGCCG 61.936 66.667 0.00 0.00 0.00 5.69
1788 1838 2.809181 GACACTCATGTCGTTCGCA 58.191 52.632 0.00 0.00 45.66 5.10
1864 1914 0.540133 TTCAGGCCAGCATGCAGAAA 60.540 50.000 21.98 1.11 31.97 2.52
1865 1915 0.323999 TCAGGCCAGCATGCAGAAAT 60.324 50.000 21.98 0.00 31.97 2.17
1914 1967 3.077556 ACCCTGGGCACTCTAGCG 61.078 66.667 14.08 0.00 34.64 4.26
2145 2198 6.463995 AGATCTTTTTGTTGCAGTTTACCA 57.536 33.333 0.00 0.00 0.00 3.25
2173 2233 3.672808 AGTGAACTCTGCAGAGAATTGG 58.327 45.455 42.76 21.77 44.74 3.16
2285 2345 0.536006 GGCCAGTGTTCACTTCAGCT 60.536 55.000 0.00 0.00 0.00 4.24
2441 2505 7.894753 TTCCCATACTGAAATAAATGATGCA 57.105 32.000 0.00 0.00 0.00 3.96
2562 2626 2.042831 GCAGTGTGCTGGGATCCAC 61.043 63.158 15.23 3.29 42.78 4.02
2573 2637 2.704596 CTGGGATCCACACTGATGATCT 59.295 50.000 15.23 0.00 36.12 2.75
2673 2737 9.071276 GGATAAGGAGAAGCAAATCAAATCATA 57.929 33.333 0.00 0.00 0.00 2.15
2682 2746 6.870769 AGCAAATCAAATCATAAGGACCAAG 58.129 36.000 0.00 0.00 0.00 3.61
2683 2747 5.521372 GCAAATCAAATCATAAGGACCAAGC 59.479 40.000 0.00 0.00 0.00 4.01
2684 2748 6.628844 GCAAATCAAATCATAAGGACCAAGCT 60.629 38.462 0.00 0.00 0.00 3.74
2685 2749 7.416664 GCAAATCAAATCATAAGGACCAAGCTA 60.417 37.037 0.00 0.00 0.00 3.32
2686 2750 8.636213 CAAATCAAATCATAAGGACCAAGCTAT 58.364 33.333 0.00 0.00 0.00 2.97
2687 2751 7.756395 ATCAAATCATAAGGACCAAGCTATG 57.244 36.000 0.00 0.00 0.00 2.23
2733 2798 9.965902 CTATGGCATATATTCCTCCTTAGTTTT 57.034 33.333 7.81 0.00 0.00 2.43
2738 2803 9.998106 GCATATATTCCTCCTTAGTTTTCTACA 57.002 33.333 0.00 0.00 31.46 2.74
2764 2829 7.397192 ACCTACGTAGTTTAACCAAGAGGAATA 59.603 37.037 20.73 0.00 37.78 1.75
2845 2910 1.169661 ACGTCGGGCAAATTTCTGCA 61.170 50.000 4.59 0.00 44.52 4.41
2846 2911 0.454957 CGTCGGGCAAATTTCTGCAG 60.455 55.000 7.63 7.63 44.52 4.41
2847 2912 0.733909 GTCGGGCAAATTTCTGCAGC 60.734 55.000 9.47 0.00 44.52 5.25
2848 2913 0.895100 TCGGGCAAATTTCTGCAGCT 60.895 50.000 9.47 0.00 44.52 4.24
2849 2914 0.810648 CGGGCAAATTTCTGCAGCTA 59.189 50.000 9.47 0.00 44.52 3.32
2850 2915 1.406539 CGGGCAAATTTCTGCAGCTAT 59.593 47.619 9.47 1.33 44.52 2.97
2851 2916 2.618241 CGGGCAAATTTCTGCAGCTATA 59.382 45.455 9.47 0.00 44.52 1.31
2852 2917 3.254166 CGGGCAAATTTCTGCAGCTATAT 59.746 43.478 9.47 0.00 44.52 0.86
2853 2918 4.553323 GGGCAAATTTCTGCAGCTATATG 58.447 43.478 9.47 6.56 44.52 1.78
2854 2919 3.985925 GGCAAATTTCTGCAGCTATATGC 59.014 43.478 9.47 15.74 44.52 3.14
2942 3007 4.220821 ACGTTAGAAGGTCACATCTGTCAT 59.779 41.667 0.00 0.00 0.00 3.06
2944 3009 6.096987 ACGTTAGAAGGTCACATCTGTCATAT 59.903 38.462 0.00 0.00 0.00 1.78
3076 3141 8.087750 TGCGATTTGATTTGGACTTAAAGAAAT 58.912 29.630 0.00 0.00 0.00 2.17
3116 3181 2.435805 GAGACAGTGGGCATTGGATCTA 59.564 50.000 0.00 0.00 0.00 1.98
3126 3191 4.035675 GGGCATTGGATCTAAGAACTTTCG 59.964 45.833 0.00 0.00 0.00 3.46
3129 3194 5.563842 CATTGGATCTAAGAACTTTCGCAC 58.436 41.667 0.00 0.00 0.00 5.34
3318 3384 4.312443 CCTTACTTTGTTCCTTCGCACTA 58.688 43.478 0.00 0.00 0.00 2.74
3381 3447 3.398954 TTGCTCGATACGGCAAATTTC 57.601 42.857 7.29 0.00 44.01 2.17
3475 3541 0.247775 GTGTGCGAAAACGAAACCGT 60.248 50.000 0.00 0.00 42.82 4.83
3657 3734 2.431771 CGATGGTGGCGACGAACA 60.432 61.111 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 5.059161 TGGATCACATAGTGCTAGCAAATC 58.941 41.667 21.29 7.42 32.98 2.17
166 167 0.519961 GATGTTACCGCCGCTTGTTT 59.480 50.000 0.00 0.00 0.00 2.83
200 201 3.626924 GCACCCACCCACTCGTCT 61.627 66.667 0.00 0.00 0.00 4.18
238 239 5.081032 ACATAAAATTCCCCGAGGTTTTGA 58.919 37.500 0.00 0.00 0.00 2.69
265 272 1.760875 GTAGATCCAGACCGGGGCA 60.761 63.158 6.32 0.00 34.36 5.36
268 275 1.133575 TGGTAGTAGATCCAGACCGGG 60.134 57.143 6.32 0.00 34.36 5.73
288 296 0.038526 AATCTTCGTCGCCGACAACT 60.039 50.000 18.40 0.00 44.13 3.16
329 337 2.123982 AGCAATGCCAGGCTAGCC 60.124 61.111 27.19 27.19 38.90 3.93
349 357 6.147821 CACATTACTTCTTGATCAGGAAACGT 59.852 38.462 19.50 16.62 0.00 3.99
407 415 1.165907 CGGTATGATGCGGCATTGGT 61.166 55.000 17.78 8.70 0.00 3.67
443 451 1.377725 CCCAGTTGCGCAGAGGAAT 60.378 57.895 21.76 0.10 31.33 3.01
480 488 4.499696 CCCTTGATAATGGAAATTGGCGAC 60.500 45.833 0.00 0.00 0.00 5.19
490 498 5.164897 TCATCCATCTCCCTTGATAATGGA 58.835 41.667 4.96 4.96 42.40 3.41
543 551 3.007940 CAGGATGGTGAGTTGTTAGTGGA 59.992 47.826 0.00 0.00 0.00 4.02
596 604 0.102300 GTTGTGCAGAAAAGGCGGTT 59.898 50.000 0.00 0.00 0.00 4.44
673 684 1.856265 CGGTGAGTTTGGCAAGCTCC 61.856 60.000 32.27 24.53 0.00 4.70
678 689 3.487576 ACTTCGGTGAGTTTGGCAA 57.512 47.368 0.00 0.00 0.00 4.52
692 703 4.319177 AGACTCCACTATTTGCACACTTC 58.681 43.478 0.00 0.00 0.00 3.01
731 742 3.204526 CATCTCCTCCATTGCTGAGTTC 58.795 50.000 0.00 0.00 0.00 3.01
742 753 2.300996 GGTGGAAGCATCTCCTCCA 58.699 57.895 13.03 0.00 45.04 3.86
762 773 5.971202 ACACGAATCACAAAGATGTTTTGAC 59.029 36.000 6.63 0.00 37.82 3.18
769 782 4.997905 ACTGACACGAATCACAAAGATG 57.002 40.909 0.00 0.00 36.96 2.90
777 790 3.506067 TGAGAAGCTACTGACACGAATCA 59.494 43.478 0.00 0.00 0.00 2.57
786 799 2.093816 CAGTGCCATGAGAAGCTACTGA 60.094 50.000 13.61 0.00 38.90 3.41
868 882 0.883833 AAGAAAAGGCGCTGGTGATG 59.116 50.000 7.64 0.00 0.00 3.07
874 888 0.242017 CCTCCAAAGAAAAGGCGCTG 59.758 55.000 7.64 0.00 0.00 5.18
909 923 2.036475 AGATGTCATGGAGGATACGCAC 59.964 50.000 0.00 0.00 46.39 5.34
922 936 7.067494 CCCTTCCGAAAATTAAAGAGATGTCAT 59.933 37.037 0.00 0.00 0.00 3.06
942 956 0.324091 TACCAGACGGAGACCCTTCC 60.324 60.000 0.00 0.00 31.50 3.46
948 962 3.808174 GGCATAATTTACCAGACGGAGAC 59.192 47.826 0.00 0.00 35.59 3.36
964 978 7.849322 TGTCATGGACTACTTATAGGCATAA 57.151 36.000 0.00 0.00 38.33 1.90
991 1005 8.523915 TTTACTTGTATTGCCATGATGATTCT 57.476 30.769 0.00 0.00 0.00 2.40
993 1007 7.342799 ACCTTTACTTGTATTGCCATGATGATT 59.657 33.333 0.00 0.00 0.00 2.57
1014 1028 3.953612 TGCTGAATCTTTGACACACCTTT 59.046 39.130 0.00 0.00 0.00 3.11
1039 1061 2.044053 CGCCATCCCCCACATTGT 60.044 61.111 0.00 0.00 0.00 2.71
1083 1105 4.301505 TCGAAGACCAGCATTGCC 57.698 55.556 4.70 0.00 0.00 4.52
1296 1327 4.562789 GTGTTCCTGAAAGAAAACAACAGC 59.437 41.667 0.00 0.00 39.78 4.40
1347 1381 1.997669 CGCTGAAGAAGAGGTACACC 58.002 55.000 0.00 0.00 0.00 4.16
1403 1437 7.928706 GCTGTACTAATATGAGGAAGTGATTGT 59.071 37.037 0.00 0.00 0.00 2.71
1428 1462 1.014564 GCATTCTATAGCCGGGTCGC 61.015 60.000 10.79 0.00 0.00 5.19
1430 1464 1.896465 AGAGCATTCTATAGCCGGGTC 59.104 52.381 10.79 0.00 0.00 4.46
1437 1471 7.110043 TCATATCTGGCAGAGCATTCTATAG 57.890 40.000 23.24 9.17 30.73 1.31
1442 1476 5.122554 CAGAATCATATCTGGCAGAGCATTC 59.877 44.000 23.24 22.07 42.52 2.67
1447 1481 4.274602 AGCAGAATCATATCTGGCAGAG 57.725 45.455 23.24 9.59 45.60 3.35
1467 1501 7.256286 GGAGGAAAAGTCAATGATGAATCAAG 58.744 38.462 0.00 0.00 40.69 3.02
1504 1543 2.350057 AGGTATACTGAGAGAGCGCA 57.650 50.000 11.47 0.00 0.00 6.09
1591 1630 2.376808 AGACAGCGATGAGGAAAGTG 57.623 50.000 8.12 0.00 0.00 3.16
1606 1645 1.227527 CACACACCGGAGCAAGACA 60.228 57.895 9.46 0.00 0.00 3.41
1616 1655 3.935872 CGGCACACACACACACCG 61.936 66.667 0.00 0.00 0.00 4.94
1630 1669 4.816392 ACCAGGTAAATTTGAAAATCGGC 58.184 39.130 0.00 0.00 0.00 5.54
1633 1672 9.419297 GAAAGGTACCAGGTAAATTTGAAAATC 57.581 33.333 15.94 0.00 0.00 2.17
1704 1751 0.109342 CCACCCTACATCCATGAGCC 59.891 60.000 0.00 0.00 0.00 4.70
1864 1914 1.814634 GCCAGATTCTGCTGCTGCTAT 60.815 52.381 17.00 7.51 40.48 2.97
1865 1915 0.463295 GCCAGATTCTGCTGCTGCTA 60.463 55.000 17.00 2.17 40.48 3.49
2151 2204 3.683822 CCAATTCTCTGCAGAGTTCACTC 59.316 47.826 36.32 0.00 42.60 3.51
2152 2205 3.672808 CCAATTCTCTGCAGAGTTCACT 58.327 45.455 36.32 18.60 42.60 3.41
2154 2207 2.039480 AGCCAATTCTCTGCAGAGTTCA 59.961 45.455 36.32 24.23 42.60 3.18
2173 2233 3.782889 ACAAGTGTTCTTTGGTTCAGC 57.217 42.857 0.00 0.00 0.00 4.26
2285 2345 3.723154 TGATCTGGATGATGGGGATGAAA 59.277 43.478 0.00 0.00 35.14 2.69
2562 2626 1.489649 AGAGGCCCAAGATCATCAGTG 59.510 52.381 0.00 0.00 0.00 3.66
2573 2637 3.048600 ACAGCAGAATATAGAGGCCCAA 58.951 45.455 0.00 0.00 0.00 4.12
2682 2746 3.268023 ACAACCTAAGAGTGCCATAGC 57.732 47.619 0.00 0.00 40.48 2.97
2683 2747 6.879458 AGTTTTACAACCTAAGAGTGCCATAG 59.121 38.462 0.00 0.00 32.70 2.23
2684 2748 6.775708 AGTTTTACAACCTAAGAGTGCCATA 58.224 36.000 0.00 0.00 32.70 2.74
2685 2749 5.631119 AGTTTTACAACCTAAGAGTGCCAT 58.369 37.500 0.00 0.00 32.70 4.40
2686 2750 5.043737 AGTTTTACAACCTAAGAGTGCCA 57.956 39.130 0.00 0.00 32.70 4.92
2687 2751 6.093633 CCATAGTTTTACAACCTAAGAGTGCC 59.906 42.308 0.00 0.00 32.70 5.01
2691 2755 7.865706 ATGCCATAGTTTTACAACCTAAGAG 57.134 36.000 0.00 0.00 32.70 2.85
2733 2798 6.714810 TCTTGGTTAAACTACGTAGGTGTAGA 59.285 38.462 25.63 13.15 43.65 2.59
2738 2803 5.079643 TCCTCTTGGTTAAACTACGTAGGT 58.920 41.667 25.63 17.99 34.23 3.08
2764 2829 9.186837 ACTGCATTACTAACAGTACTGTATACT 57.813 33.333 28.13 15.32 44.13 2.12
2835 2900 7.587037 TTTAGGCATATAGCTGCAGAAATTT 57.413 32.000 20.43 1.79 44.12 1.82
2854 2919 6.183360 CCTGAAGAATTTGGGCTACATTTAGG 60.183 42.308 0.00 0.00 0.00 2.69
2908 2973 7.338703 TGTGACCTTCTAACGTACTGAGATATT 59.661 37.037 0.00 0.00 0.00 1.28
3076 3141 5.589855 TGTCTCTTCTTTGATGAGCAAAACA 59.410 36.000 0.00 0.00 45.26 2.83
3116 3181 1.226746 CTTCCCGTGCGAAAGTTCTT 58.773 50.000 0.00 0.00 0.00 2.52
3208 3274 5.128827 CCTTCTTCTACACTGTAGGGCATTA 59.871 44.000 14.97 0.00 0.00 1.90
3318 3384 6.283694 TCGAATAGCTGTCTCTTTATTGCAT 58.716 36.000 0.00 0.00 0.00 3.96
3381 3447 8.737168 TCTCTTAATGTCTGAATAATTGTGGG 57.263 34.615 0.00 0.00 0.00 4.61
3475 3541 0.247460 CAAGGCATGTCTCCGACTCA 59.753 55.000 0.00 0.00 33.15 3.41
3494 3560 1.025041 GGTCCGGAAAATGGCATCTC 58.975 55.000 5.23 0.28 0.00 2.75
3657 3734 4.326153 CATGACGGCGATCACGAT 57.674 55.556 16.62 0.00 42.66 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.