AutoCloner

Multiple sequence alignment - TraesCS7A01G023900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G023900	chr7A	100.000	3002	0	0	1	3002	9485884	9488885	0.000000e+00	5544.0
1	TraesCS7A01G023900	chr7A	80.788	838	125	19	1326	2142	9688097	9687275	9.140000e-175	623.0
2	TraesCS7A01G023900	chr7A	74.760	1458	265	54	707	2131	9494171	9495558	2.610000e-155	558.0
3	TraesCS7A01G023900	chr7A	77.128	752	107	28	2182	2898	9687282	9686561	2.830000e-100	375.0
4	TraesCS7A01G023900	chr7A	83.616	354	40	6	2630	2978	10271369	10271709	1.740000e-82	316.0
5	TraesCS7A01G023900	chr7A	86.752	234	24	5	2745	2978	10246321	10246547	1.380000e-63	254.0
6	TraesCS7A01G023900	chr7A	96.970	33	1	0	556	588	9642347	9642315	4.180000e-04	56.5
7	TraesCS7A01G023900	chr7D	87.993	2357	224	24	665	3002	10087984	10085668	0.000000e+00	2730.0
8	TraesCS7A01G023900	chr7D	77.554	1938	324	66	793	2689	11066832	11068699	0.000000e+00	1066.0
9	TraesCS7A01G023900	chr7D	78.398	1773	272	64	792	2512	109144722	109143009	0.000000e+00	1050.0
10	TraesCS7A01G023900	chr7D	77.984	1667	263	57	779	2395	10151125	10149513	0.000000e+00	950.0
11	TraesCS7A01G023900	chr7D	79.429	1400	198	47	829	2188	8870169	8871518	0.000000e+00	907.0
12	TraesCS7A01G023900	chr7D	83.682	717	102	12	2258	2970	8871533	8872238	0.000000e+00	662.0
13	TraesCS7A01G023900	chr7D	80.649	832	117	27	1721	2537	9361063	9361865	3.310000e-169	604.0
14	TraesCS7A01G023900	chr7D	84.188	234	33	3	778	1007	8850058	8850291	1.080000e-54	224.0
15	TraesCS7A01G023900	chr7D	94.667	75	4	0	559	633	10088064	10087990	1.890000e-22	117.0
16	TraesCS7A01G023900	chr7D	75.241	311	39	24	553	847	9218142	9218430	2.450000e-21	113.0
17	TraesCS7A01G023900	chr4A	85.655	2426	247	31	618	3002	730388584	730390949	0.000000e+00	2459.0
18	TraesCS7A01G023900	chr4A	88.361	1409	124	27	649	2048	729426259	729424882	0.000000e+00	1657.0
19	TraesCS7A01G023900	chr4A	79.435	1770	274	44	792	2521	728554262	728552543	0.000000e+00	1170.0
20	TraesCS7A01G023900	chr4A	77.735	2066	332	69	793	2807	727080787	727078799	0.000000e+00	1149.0
21	TraesCS7A01G023900	chr4A	81.942	1246	172	29	825	2050	728353045	728351833	0.000000e+00	1005.0
22	TraesCS7A01G023900	chr4A	77.702	1749	280	69	713	2395	728645537	728643833	0.000000e+00	968.0
23	TraesCS7A01G023900	chr4A	80.079	1265	190	35	779	2015	731097636	731098866	0.000000e+00	883.0
24	TraesCS7A01G023900	chr4A	78.492	1353	231	30	779	2094	730004480	730003151	0.000000e+00	832.0
25	TraesCS7A01G023900	chr4A	84.332	868	94	13	2137	3002	729424829	729424002	0.000000e+00	811.0
26	TraesCS7A01G023900	chr4A	78.855	1258	222	27	819	2054	743634606	743635841	0.000000e+00	809.0
27	TraesCS7A01G023900	chr4A	81.874	651	83	22	2336	2970	729159237	729159868	1.600000e-142	516.0
28	TraesCS7A01G023900	chr4A	84.672	548	40	16	1886	2419	730003133	730002616	9.600000e-140	507.0
29	TraesCS7A01G023900	chr4A	79.597	745	113	21	792	1528	729677749	729678462	5.780000e-137	497.0
30	TraesCS7A01G023900	chr4A	92.135	267	19	1	557	823	728814535	728814799	2.830000e-100	375.0
31	TraesCS7A01G023900	chr4A	87.379	103	5	4	2218	2315	730324261	730324360	8.800000e-21	111.0
32	TraesCS7A01G023900	chr4D	81.509	2174	275	70	712	2824	507352333	507350226	0.000000e+00	1670.0
33	TraesCS7A01G023900	chr4B	81.679	2096	274	61	712	2759	654201850	654203883	0.000000e+00	1642.0
34	TraesCS7A01G023900	chr7B	78.193	1793	288	61	792	2536	68223652	68221915	0.000000e+00	1050.0
35	TraesCS7A01G023900	chr7B	78.204	1771	279	60	792	2512	68160703	68158990	0.000000e+00	1033.0
36	TraesCS7A01G023900	chrUn	98.883	537	5	1	1	536	75431782	75432318	0.000000e+00	957.0
37	TraesCS7A01G023900	chr6B	98.883	537	5	1	1	536	246778115	246777579	0.000000e+00	957.0
38	TraesCS7A01G023900	chr5B	95.580	543	16	2	2	536	493027231	493026689	0.000000e+00	863.0
39	TraesCS7A01G023900	chr1B	95.221	544	18	3	2	538	507453884	507454426	0.000000e+00	854.0
40	TraesCS7A01G023900	chr1A	94.423	520	20	3	2	513	347781595	347782113	0.000000e+00	791.0
41	TraesCS7A01G023900	chr3B	89.165	563	42	9	2	548	28184618	28185177	0.000000e+00	684.0
42	TraesCS7A01G023900	chr3B	85.688	538	48	16	4	539	782472003	782472513	9.470000e-150	540.0
43	TraesCS7A01G023900	chr5A	83.959	586	67	13	2188	2762	691822371	691822940	1.220000e-148	536.0
44	TraesCS7A01G023900	chr3D	94.357	319	8	3	2	311	24665517	24665834	5.820000e-132	481.0
45	TraesCS7A01G023900	chr3D	92.829	251	15	3	287	536	24665839	24666087	7.910000e-96	361.0
46	TraesCS7A01G023900	chr2B	94.872	39	2	0	506	544	467793177	467793139	8.990000e-06	62.1
47	TraesCS7A01G023900	chr1D	89.583	48	5	0	489	536	79827682	79827729	8.990000e-06	62.1
48	TraesCS7A01G023900	chr3A	100.000	32	0	0	506	537	327830159	327830190	3.230000e-05	60.2

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G023900	chr7A	9485884	9488885	3001	False	5544.0	5544	100.0000	1	3002	1	chr7A.!!$F1	3001
1	TraesCS7A01G023900	chr7A	9494171	9495558	1387	False	558.0	558	74.7600	707	2131	1	chr7A.!!$F2	1424
2	TraesCS7A01G023900	chr7A	9686561	9688097	1536	True	499.0	623	78.9580	1326	2898	2	chr7A.!!$R2	1572
3	TraesCS7A01G023900	chr7D	10085668	10088064	2396	True	1423.5	2730	91.3300	559	3002	2	chr7D.!!$R3	2443
4	TraesCS7A01G023900	chr7D	11066832	11068699	1867	False	1066.0	1066	77.5540	793	2689	1	chr7D.!!$F4	1896
5	TraesCS7A01G023900	chr7D	109143009	109144722	1713	True	1050.0	1050	78.3980	792	2512	1	chr7D.!!$R2	1720
6	TraesCS7A01G023900	chr7D	10149513	10151125	1612	True	950.0	950	77.9840	779	2395	1	chr7D.!!$R1	1616
7	TraesCS7A01G023900	chr7D	8870169	8872238	2069	False	784.5	907	81.5555	829	2970	2	chr7D.!!$F5	2141
8	TraesCS7A01G023900	chr7D	9361063	9361865	802	False	604.0	604	80.6490	1721	2537	1	chr7D.!!$F3	816
9	TraesCS7A01G023900	chr4A	730388584	730390949	2365	False	2459.0	2459	85.6550	618	3002	1	chr4A.!!$F5	2384
10	TraesCS7A01G023900	chr4A	729424002	729426259	2257	True	1234.0	1657	86.3465	649	3002	2	chr4A.!!$R5	2353
11	TraesCS7A01G023900	chr4A	728552543	728554262	1719	True	1170.0	1170	79.4350	792	2521	1	chr4A.!!$R3	1729
12	TraesCS7A01G023900	chr4A	727078799	727080787	1988	True	1149.0	1149	77.7350	793	2807	1	chr4A.!!$R1	2014
13	TraesCS7A01G023900	chr4A	728351833	728353045	1212	True	1005.0	1005	81.9420	825	2050	1	chr4A.!!$R2	1225
14	TraesCS7A01G023900	chr4A	728643833	728645537	1704	True	968.0	968	77.7020	713	2395	1	chr4A.!!$R4	1682
15	TraesCS7A01G023900	chr4A	731097636	731098866	1230	False	883.0	883	80.0790	779	2015	1	chr4A.!!$F6	1236
16	TraesCS7A01G023900	chr4A	743634606	743635841	1235	False	809.0	809	78.8550	819	2054	1	chr4A.!!$F7	1235
17	TraesCS7A01G023900	chr4A	730002616	730004480	1864	True	669.5	832	81.5820	779	2419	2	chr4A.!!$R6	1640
18	TraesCS7A01G023900	chr4A	729159237	729159868	631	False	516.0	516	81.8740	2336	2970	1	chr4A.!!$F2	634
19	TraesCS7A01G023900	chr4A	729677749	729678462	713	False	497.0	497	79.5970	792	1528	1	chr4A.!!$F3	736
20	TraesCS7A01G023900	chr4D	507350226	507352333	2107	True	1670.0	1670	81.5090	712	2824	1	chr4D.!!$R1	2112
21	TraesCS7A01G023900	chr4B	654201850	654203883	2033	False	1642.0	1642	81.6790	712	2759	1	chr4B.!!$F1	2047
22	TraesCS7A01G023900	chr7B	68221915	68223652	1737	True	1050.0	1050	78.1930	792	2536	1	chr7B.!!$R2	1744
23	TraesCS7A01G023900	chr7B	68158990	68160703	1713	True	1033.0	1033	78.2040	792	2512	1	chr7B.!!$R1	1720
24	TraesCS7A01G023900	chrUn	75431782	75432318	536	False	957.0	957	98.8830	1	536	1	chrUn.!!$F1	535
25	TraesCS7A01G023900	chr6B	246777579	246778115	536	True	957.0	957	98.8830	1	536	1	chr6B.!!$R1	535
26	TraesCS7A01G023900	chr5B	493026689	493027231	542	True	863.0	863	95.5800	2	536	1	chr5B.!!$R1	534
27	TraesCS7A01G023900	chr1B	507453884	507454426	542	False	854.0	854	95.2210	2	538	1	chr1B.!!$F1	536
28	TraesCS7A01G023900	chr1A	347781595	347782113	518	False	791.0	791	94.4230	2	513	1	chr1A.!!$F1	511
29	TraesCS7A01G023900	chr3B	28184618	28185177	559	False	684.0	684	89.1650	2	548	1	chr3B.!!$F1	546
30	TraesCS7A01G023900	chr3B	782472003	782472513	510	False	540.0	540	85.6880	4	539	1	chr3B.!!$F2	535
31	TraesCS7A01G023900	chr5A	691822371	691822940	569	False	536.0	536	83.9590	2188	2762	1	chr5A.!!$F1	574
32	TraesCS7A01G023900	chr3D	24665517	24666087	570	False	421.0	481	93.5930	2	536	2	chr3D.!!$F1	534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
763	819	0.327924	ATTTGCAGATCCACCCGACA	59.672	50.0	0.0	0.0	0.0	4.35	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2094	2569	0.322975	AGGAGTGTAAGCACCAGCAG	59.677	55.0	0.0	0.0	46.35	4.24	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
577	624	0.758685	AAGGGATCCGCTGGAGAGAG	60.759	60.000	5.45	0.00	34.05	3.20
633	680	1.038130	CCGATCGTCCTCCCAGAAGT	61.038	60.000	15.09	0.00	0.00	3.01
636	683	1.407258	GATCGTCCTCCCAGAAGTGAG	59.593	57.143	0.00	0.00	0.00	3.51
670	717	1.887707	GTCGCCGCCCTAATCCAAG	60.888	63.158	0.00	0.00	0.00	3.61
704	755	7.226918	CGTAAGATCACCACTGATTACTCTCTA	59.773	40.741	0.00	0.00	37.24	2.43
707	758	8.546083	AGATCACCACTGATTACTCTCTATTT	57.454	34.615	0.00	0.00	37.24	1.40
735	786	1.878088	CCCAGCCAGATCGATGATTTG	59.122	52.381	0.54	0.00	0.00	2.32
763	819	0.327924	ATTTGCAGATCCACCCGACA	59.672	50.000	0.00	0.00	0.00	4.35
813	887	2.042843	GGAGGAGGCGGAGAAGGA	60.043	66.667	0.00	0.00	0.00	3.36
823	899	1.799548	GCGGAGAAGGAGATGTTCGAC	60.800	57.143	0.00	0.00	0.00	4.20
968	1057	0.760567	TGTGTCTCTGTGTCCTGGCT	60.761	55.000	0.00	0.00	0.00	4.75
969	1058	1.257743	GTGTCTCTGTGTCCTGGCTA	58.742	55.000	0.00	0.00	0.00	3.93
972	1061	1.827969	GTCTCTGTGTCCTGGCTACAT	59.172	52.381	3.82	0.00	0.00	2.29
975	1064	1.827344	TCTGTGTCCTGGCTACATCTG	59.173	52.381	3.82	0.00	0.00	2.90
1008	1097	3.434319	AACCGCAAGATGCTGCCG	61.434	61.111	0.00	0.00	42.25	5.69
1075	1176	4.368543	GCCAGCACTTTGCCAGCC	62.369	66.667	0.00	0.00	46.52	4.85
1122	1229	2.276391	GACCTTTCCCTCCCTTACCTT	58.724	52.381	0.00	0.00	0.00	3.50
1336	1479	1.123077	CTACATCACAGGCCTGGCTA	58.877	55.000	35.42	20.67	34.19	3.93
1362	1505	0.673644	CGGCAGTCTCGTCCCATTTT	60.674	55.000	0.00	0.00	0.00	1.82
1373	1516	4.651778	TCGTCCCATTTTCACATTCTTCT	58.348	39.130	0.00	0.00	0.00	2.85
1398	1541	7.507733	TTTCGAAGAGACCTATACTGGATAC	57.492	40.000	0.00	0.00	38.43	2.24
1609	1767	3.519913	GGGGAAAGTGTGGAAGACTATCT	59.480	47.826	0.00	0.00	40.98	1.98
1614	1772	3.169099	AGTGTGGAAGACTATCTGCACT	58.831	45.455	0.00	0.00	39.50	4.40
1622	1780	3.556999	AGACTATCTGCACTCCGTATGT	58.443	45.455	0.00	0.00	0.00	2.29
1635	1793	5.411361	CACTCCGTATGTTCAAAGATTTGGA	59.589	40.000	5.52	0.00	38.66	3.53
1708	1875	6.404184	CGGTGATTACAATGCAATCCAGTTTA	60.404	38.462	3.95	0.00	32.46	2.01
1884	2306	1.032114	GTGGTGATACCTTGGCAGCC	61.032	60.000	3.66	3.66	39.58	4.85
2081	2553	6.070824	TGTGTACCTCTGAATCTGCTTGAATA	60.071	38.462	0.00	0.00	0.00	1.75
2094	2569	3.243168	TGCTTGAATAATGCCGCTCAATC	60.243	43.478	0.00	0.00	0.00	2.67
2149	2663	1.250328	TTTCAGAGCAATGCCTGGTG	58.750	50.000	18.70	5.83	35.35	4.17
2152	2666	0.809385	CAGAGCAATGCCTGGTGAAG	59.191	55.000	13.50	0.00	35.35	3.02
2168	2683	4.635765	TGGTGAAGCACAGATTAAGCATAC	59.364	41.667	0.00	0.00	35.86	2.39
2204	2729	5.140454	AGAGCATTGTTACCCTTGTTCTTT	58.860	37.500	0.00	0.00	0.00	2.52
2266	2802	5.323371	TCCATGTGGCTAAATTGCTAAAC	57.677	39.130	0.00	0.00	34.44	2.01
2290	2826	7.490000	ACTATACTGTAATCGGTCTTCCTTTG	58.510	38.462	0.00	0.00	34.68	2.77
2299	2835	4.138290	TCGGTCTTCCTTTGCATAACAAA	58.862	39.130	0.00	0.00	46.01	2.83
2324	2861	8.897872	ACAGTTATTATGGTTACCCTAAATCG	57.102	34.615	3.39	0.00	0.00	3.34
2382	2930	3.003480	GTCAATCAGACTGGTTACTGGC	58.997	50.000	0.00	0.00	44.09	4.85
2395	2945	3.000727	GTTACTGGCGCAATGTCTAGTT	58.999	45.455	10.83	0.00	0.00	2.24
2396	2946	2.185004	ACTGGCGCAATGTCTAGTTT	57.815	45.000	10.83	0.00	0.00	2.66
2398	2948	3.262420	ACTGGCGCAATGTCTAGTTTAG	58.738	45.455	10.83	0.00	0.00	1.85
2429	2979	9.602568	TTCATTAAGTATTTTGGTCATACGCTA	57.397	29.630	0.00	0.00	33.07	4.26
2444	2998	1.873591	ACGCTACCTTTGAGCAAGTTG	59.126	47.619	0.00	0.00	40.09	3.16
2450	3004	5.005682	GCTACCTTTGAGCAAGTTGTTTTTG	59.994	40.000	4.48	0.00	39.84	2.44
2645	3211	1.005340	GAGATGCAGCTTCAAGGACG	58.995	55.000	5.67	0.00	0.00	4.79
2654	3220	1.202110	GCTTCAAGGACGTGCATGATG	60.202	52.381	15.68	17.69	0.00	3.07
2711	3291	1.522580	GGCCTCTTGATGTCCGCTC	60.523	63.158	0.00	0.00	0.00	5.03
2730	3310	3.508762	CTCTGTTGATTGATTTGGCTGC	58.491	45.455	0.00	0.00	0.00	5.25
2731	3311	2.095110	TCTGTTGATTGATTTGGCTGCG	60.095	45.455	0.00	0.00	0.00	5.18
2737	3317	0.743688	TTGATTTGGCTGCGTGTTGT	59.256	45.000	0.00	0.00	0.00	3.32
2753	3340	3.942748	GTGTTGTTACCCTGTTTGAGTCA	59.057	43.478	0.00	0.00	0.00	3.41
2853	3454	9.778741	AATAGACAATCTGAACTGAAAACAGTA	57.221	29.630	3.33	0.00	34.56	2.74
2882	3483	7.837202	TGAATCATTCAAGAATGCCATTTTC	57.163	32.000	16.05	13.03	45.77	2.29
2885	3486	8.857694	AATCATTCAAGAATGCCATTTTCTTT	57.142	26.923	16.05	0.00	45.77	2.52
2950	3551	1.043116	TAGACCTGGCATGGACCGAG	61.043	60.000	9.53	0.00	0.00	4.63

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
50	51	4.882427	CCTCTCACACTCGATAACCTCTTA	59.118	45.833	0.00	0.00	0.00	2.10
555	602	0.991920	TCTCCAGCGGATCCCTTTTT	59.008	50.000	6.06	0.00	0.00	1.94
556	603	0.543749	CTCTCCAGCGGATCCCTTTT	59.456	55.000	6.06	0.00	0.00	2.27
557	604	0.325671	TCTCTCCAGCGGATCCCTTT	60.326	55.000	6.06	0.00	0.00	3.11
577	624	0.388263	GGAACGAACGAGGACTGGAC	60.388	60.000	0.14	0.00	0.00	4.02
670	717	3.314635	AGTGGTGATCTTACGGTCGTATC	59.685	47.826	4.00	1.53	0.00	2.24
704	755	3.243359	TCTGGCTGGGAAAAGTCAAAT	57.757	42.857	0.00	0.00	29.75	2.32
707	758	1.339055	CGATCTGGCTGGGAAAAGTCA	60.339	52.381	0.00	0.00	0.00	3.41
735	786	4.057432	GTGGATCTGCAAATAGAGAGAGC	58.943	47.826	0.00	0.00	0.00	4.09
763	819	0.614134	GGGAGACAGGGTTAGGTCGT	60.614	60.000	0.00	0.00	39.01	4.34
823	899	0.954452	GCCTTGACTTGGTGTTCCTG	59.046	55.000	0.00	0.00	34.23	3.86
884	972	1.025812	GAGGATGAGGTCGTCGTGAT	58.974	55.000	0.00	0.00	32.65	3.06
968	1057	1.461091	GGGGTCGGCGATCAGATGTA	61.461	60.000	23.09	0.00	0.00	2.29
969	1058	2.797278	GGGGTCGGCGATCAGATGT	61.797	63.158	23.09	0.00	0.00	3.06
1062	1163	2.338785	GGAGAGGCTGGCAAAGTGC	61.339	63.158	3.38	0.00	44.08	4.40
1122	1229	4.062293	CCTTGTCGTCCTTGTTATTGTGA	58.938	43.478	0.00	0.00	0.00	3.58
1220	1343	5.163591	ACAAAACCGAAATCGTCCTCTTTTT	60.164	36.000	1.79	0.00	37.74	1.94
1221	1344	4.337274	ACAAAACCGAAATCGTCCTCTTTT	59.663	37.500	1.79	0.00	37.74	2.27
1336	1479	0.103208	GACGAGACTGCCGGATCAAT	59.897	55.000	5.05	0.00	0.00	2.57
1373	1516	7.778853	AGTATCCAGTATAGGTCTCTTCGAAAA	59.221	37.037	0.00	0.00	0.00	2.29
1609	1767	3.394674	TCTTTGAACATACGGAGTGCA	57.605	42.857	0.00	0.00	45.73	4.57
1614	1772	5.182380	GGTTCCAAATCTTTGAACATACGGA	59.818	40.000	4.25	0.00	40.55	4.69
1622	1780	6.684897	ATCCAATGGTTCCAAATCTTTGAA	57.315	33.333	0.00	0.00	40.55	2.69
1635	1793	2.291800	CCCCTGAGACAATCCAATGGTT	60.292	50.000	0.00	0.00	0.00	3.67
1708	1875	0.743688	CACCAGAGCGCTATCTCAGT	59.256	55.000	11.50	1.15	35.59	3.41
1864	2041	1.369091	GCTGCCAAGGTATCACCACG	61.369	60.000	0.00	0.00	41.95	4.94
1884	2306	6.834959	ACTTTCTGATGTTGCATATCGTAG	57.165	37.500	0.00	0.00	0.00	3.51
2081	2553	1.381928	CCAGCAGATTGAGCGGCATT	61.382	55.000	1.45	0.00	37.01	3.56
2094	2569	0.322975	AGGAGTGTAAGCACCAGCAG	59.677	55.000	0.00	0.00	46.35	4.24
2149	2663	5.582269	TGACAGTATGCTTAATCTGTGCTTC	59.418	40.000	7.39	0.00	42.53	3.86
2152	2666	5.998454	ATGACAGTATGCTTAATCTGTGC	57.002	39.130	7.39	0.00	42.53	4.57
2168	2683	5.130292	ACAATGCTCTTTGGAAATGACAG	57.870	39.130	0.00	0.00	0.00	3.51
2204	2729	4.523083	ACAACAACCAGTGCTAGAGAAAA	58.477	39.130	0.00	0.00	0.00	2.29
2208	2733	3.496130	CAGAACAACAACCAGTGCTAGAG	59.504	47.826	0.00	0.00	0.00	2.43
2209	2734	3.466836	CAGAACAACAACCAGTGCTAGA	58.533	45.455	0.00	0.00	0.00	2.43
2266	2802	6.421202	GCAAAGGAAGACCGATTACAGTATAG	59.579	42.308	0.00	0.00	41.83	1.31
2324	2861	2.287788	CCAGGTTCACAATCTGCAACAC	60.288	50.000	0.00	0.00	0.00	3.32
2382	2930	7.234187	TGAATAAGCTAAACTAGACATTGCG	57.766	36.000	0.00	0.00	0.00	4.85
2426	2976	3.990318	AACAACTTGCTCAAAGGTAGC	57.010	42.857	0.00	0.00	40.51	3.58
2429	2979	4.690280	CACAAAAACAACTTGCTCAAAGGT	59.310	37.500	0.00	0.00	40.51	3.50
2512	3066	7.276218	CCAATTTTATTTGTTGACATCGATGCT	59.724	33.333	25.11	12.36	0.00	3.79
2645	3211	3.902261	TCACAGACAAACATCATGCAC	57.098	42.857	0.00	0.00	0.00	4.57
2654	3220	1.014352	AGCCGTGTTCACAGACAAAC	58.986	50.000	3.87	0.00	0.00	2.93
2711	3291	2.256174	CGCAGCCAAATCAATCAACAG	58.744	47.619	0.00	0.00	0.00	3.16
2730	3310	2.940410	ACTCAAACAGGGTAACAACACG	59.060	45.455	0.00	0.00	39.74	4.49
2731	3311	3.942748	TGACTCAAACAGGGTAACAACAC	59.057	43.478	0.00	0.00	39.74	3.32
2737	3317	3.402628	GAGCTGACTCAAACAGGGTAA	57.597	47.619	0.00	0.00	42.93	2.85
2768	3367	3.938334	TCAGGAATCATCGCATCGAAAAA	59.062	39.130	0.00	0.00	39.99	1.94
2853	3454	6.127101	TGGCATTCTTGAATGATTCATCTCT	58.873	36.000	22.85	0.00	39.84	3.10
2933	3534	2.187946	CTCGGTCCATGCCAGGTC	59.812	66.667	0.00	0.00	0.00	3.85
2936	3537	1.153489	CTGACTCGGTCCATGCCAG	60.153	63.158	2.23	0.00	0.00	4.85
2950	3551	6.000891	TCAAAACTGTTACATGCATCTGAC	57.999	37.500	0.00	0.00	0.00	3.51

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.