Multiple sequence alignment - TraesCS7A01G023400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G023400 chr7A 100.000 3899 0 0 1 3899 9327677 9331575 0.000000e+00 7201.0
1 TraesCS7A01G023400 chr7A 100.000 201 0 0 152 352 9327739 9327939 4.760000e-99 372.0
2 TraesCS7A01G023400 chr7A 100.000 201 0 0 63 263 9327828 9328028 4.760000e-99 372.0
3 TraesCS7A01G023400 chr7A 100.000 112 0 0 241 352 9327739 9327850 1.420000e-49 207.0
4 TraesCS7A01G023400 chr7A 100.000 112 0 0 63 174 9327917 9328028 1.420000e-49 207.0
5 TraesCS7A01G023400 chr4A 90.641 3323 233 37 351 3625 728434461 728431169 0.000000e+00 4342.0
6 TraesCS7A01G023400 chr4A 91.886 2465 156 21 1184 3625 729857924 729860367 0.000000e+00 3404.0
7 TraesCS7A01G023400 chr4A 91.262 2037 134 20 1898 3899 718930781 718928754 0.000000e+00 2736.0
8 TraesCS7A01G023400 chr4A 87.524 2076 190 34 1865 3899 729533273 729531226 0.000000e+00 2335.0
9 TraesCS7A01G023400 chr4A 95.507 1224 47 6 1864 3085 729814538 729815755 0.000000e+00 1949.0
10 TraesCS7A01G023400 chr4A 88.007 1134 67 29 2808 3899 729682912 729684018 0.000000e+00 1277.0
11 TraesCS7A01G023400 chr4A 84.683 1371 100 43 319 1632 718932457 718931140 0.000000e+00 1267.0
12 TraesCS7A01G023400 chr4A 87.528 898 73 22 3031 3899 729048583 729047696 0.000000e+00 1002.0
13 TraesCS7A01G023400 chr4A 86.394 904 97 13 1865 2765 729682030 729682910 0.000000e+00 965.0
14 TraesCS7A01G023400 chr4A 89.641 724 65 4 918 1632 729138793 729139515 0.000000e+00 913.0
15 TraesCS7A01G023400 chr4A 81.075 1247 137 46 406 1632 729680501 729681668 0.000000e+00 904.0
16 TraesCS7A01G023400 chr4A 89.392 707 65 4 935 1632 729742418 729743123 0.000000e+00 881.0
17 TraesCS7A01G023400 chr4A 83.682 956 131 18 1864 2815 729743375 729744309 0.000000e+00 878.0
18 TraesCS7A01G023400 chr4A 83.054 956 137 19 1864 2815 729139767 729140701 0.000000e+00 845.0
19 TraesCS7A01G023400 chr4A 86.136 678 69 11 1208 1864 729050601 729049928 0.000000e+00 708.0
20 TraesCS7A01G023400 chr4A 83.747 726 108 5 918 1634 728458166 728457442 0.000000e+00 678.0
21 TraesCS7A01G023400 chr4A 93.734 383 21 1 2534 2916 728456446 728456067 4.370000e-159 571.0
22 TraesCS7A01G023400 chr4A 88.046 435 47 3 1865 2299 728457190 728456761 9.660000e-141 510.0
23 TraesCS7A01G023400 chr4A 79.012 648 92 25 927 1538 728822221 728822860 1.690000e-108 403.0
24 TraesCS7A01G023400 chr4A 91.697 277 17 1 3629 3899 728431138 728430862 2.840000e-101 379.0
25 TraesCS7A01G023400 chr4A 81.013 553 40 40 319 849 728458819 728458310 2.840000e-101 379.0
26 TraesCS7A01G023400 chr4A 91.398 279 19 2 3626 3899 729860395 729860673 1.020000e-100 377.0
27 TraesCS7A01G023400 chr4A 88.281 256 24 4 3649 3899 729084606 729084352 6.330000e-78 302.0
28 TraesCS7A01G023400 chr4A 90.521 211 15 2 2794 3003 729048789 729048583 1.380000e-69 274.0
29 TraesCS7A01G023400 chr4A 83.103 290 33 7 3626 3899 731116975 731117264 2.330000e-62 250.0
30 TraesCS7A01G023400 chr4A 78.293 410 61 13 3515 3899 729085017 729084611 5.030000e-59 239.0
31 TraesCS7A01G023400 chr4A 90.000 170 12 3 1696 1864 728457446 728457281 8.480000e-52 215.0
32 TraesCS7A01G023400 chr4A 88.824 170 10 6 1696 1864 729139513 729139674 2.380000e-47 200.0
33 TraesCS7A01G023400 chr4A 86.559 186 18 5 1696 1881 718931142 718930964 8.550000e-47 198.0
34 TraesCS7A01G023400 chr4A 88.304 171 9 8 1696 1864 729743121 729743282 1.110000e-45 195.0
35 TraesCS7A01G023400 chr4A 86.420 162 17 3 1704 1864 729533522 729533365 5.180000e-39 172.0
36 TraesCS7A01G023400 chr4A 84.906 159 10 7 864 1013 729814082 729814235 8.730000e-32 148.0
37 TraesCS7A01G023400 chr4A 100.000 40 0 0 263 302 718932495 718932456 1.500000e-09 75.0
38 TraesCS7A01G023400 chr4A 100.000 40 0 0 174 213 718932495 718932456 1.500000e-09 75.0
39 TraesCS7A01G023400 chr4A 100.000 40 0 0 85 124 718932495 718932456 1.500000e-09 75.0
40 TraesCS7A01G023400 chr7D 90.303 1650 138 13 1864 3506 10482558 10480924 0.000000e+00 2141.0
41 TraesCS7A01G023400 chr7D 90.326 951 77 11 923 1864 10483548 10482604 0.000000e+00 1232.0
42 TraesCS7A01G023400 chr7D 78.993 1490 251 37 1864 3342 10473779 10472341 0.000000e+00 961.0
43 TraesCS7A01G023400 chr7D 89.238 604 57 4 918 1514 10035473 10036075 0.000000e+00 749.0
44 TraesCS7A01G023400 chr7D 88.571 280 24 3 3627 3899 10480806 10480528 2.250000e-87 333.0
45 TraesCS7A01G023400 chr7D 76.219 677 125 20 923 1576 9088761 9089424 3.760000e-85 326.0
46 TraesCS7A01G023400 chr7D 79.757 247 29 16 494 735 10034997 10035227 4.030000e-35 159.0
47 TraesCS7A01G023400 chr7D 84.685 111 17 0 3515 3625 10480945 10480835 1.150000e-20 111.0
48 TraesCS7A01G023400 chr7D 82.432 74 11 2 1626 1698 588028224 588028296 3.250000e-06 63.9
49 TraesCS7A01G023400 chr6D 95.161 62 3 0 1 62 6315294 6315355 8.920000e-17 99.0
50 TraesCS7A01G023400 chr1A 93.651 63 4 0 1 63 288480865 288480927 1.150000e-15 95.3
51 TraesCS7A01G023400 chr1A 93.548 62 4 0 1 62 288479953 288480014 4.150000e-15 93.5
52 TraesCS7A01G023400 chr5A 93.548 62 4 0 4 65 521722972 521722911 4.150000e-15 93.5
53 TraesCS7A01G023400 chr5A 84.932 73 8 2 1626 1698 528582853 528582922 1.940000e-08 71.3
54 TraesCS7A01G023400 chr2D 90.000 70 7 0 1630 1699 344971934 344971865 1.490000e-14 91.6
55 TraesCS7A01G023400 chr7B 92.188 64 4 1 2 64 514283083 514283020 5.370000e-14 89.8
56 TraesCS7A01G023400 chr7B 89.231 65 6 1 2 65 514284004 514283940 3.230000e-11 80.5
57 TraesCS7A01G023400 chr6A 91.935 62 5 0 1 62 597456485 597456546 1.930000e-13 87.9
58 TraesCS7A01G023400 chr3A 91.935 62 5 0 4 65 392769688 392769627 1.930000e-13 87.9
59 TraesCS7A01G023400 chr1B 90.476 63 5 1 1 62 14817354 14817416 8.980000e-12 82.4
60 TraesCS7A01G023400 chrUn 94.000 50 3 0 1625 1674 134249102 134249053 4.180000e-10 76.8
61 TraesCS7A01G023400 chr5D 84.932 73 8 2 1626 1698 416073349 416073418 1.940000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G023400 chr7A 9327677 9331575 3898 False 1671.800000 7201 100.000000 1 3899 5 chr7A.!!$F1 3898
1 TraesCS7A01G023400 chr4A 728430862 728434461 3599 True 2360.500000 4342 91.169000 351 3899 2 chr4A.!!$R2 3548
2 TraesCS7A01G023400 chr4A 729857924 729860673 2749 False 1890.500000 3404 91.642000 1184 3899 2 chr4A.!!$F7 2715
3 TraesCS7A01G023400 chr4A 729531226 729533522 2296 True 1253.500000 2335 86.972000 1704 3899 2 chr4A.!!$R6 2195
4 TraesCS7A01G023400 chr4A 729680501 729684018 3517 False 1048.666667 1277 85.158667 406 3899 3 chr4A.!!$F4 3493
5 TraesCS7A01G023400 chr4A 729814082 729815755 1673 False 1048.500000 1949 90.206500 864 3085 2 chr4A.!!$F6 2221
6 TraesCS7A01G023400 chr4A 718928754 718932495 3741 True 737.666667 2736 93.750667 85 3899 6 chr4A.!!$R1 3814
7 TraesCS7A01G023400 chr4A 729047696 729050601 2905 True 661.333333 1002 88.061667 1208 3899 3 chr4A.!!$R4 2691
8 TraesCS7A01G023400 chr4A 729138793 729140701 1908 False 652.666667 913 87.173000 918 2815 3 chr4A.!!$F3 1897
9 TraesCS7A01G023400 chr4A 729742418 729744309 1891 False 651.333333 881 87.126000 935 2815 3 chr4A.!!$F5 1880
10 TraesCS7A01G023400 chr4A 728456067 728458819 2752 True 470.600000 678 87.308000 319 2916 5 chr4A.!!$R3 2597
11 TraesCS7A01G023400 chr4A 728822221 728822860 639 False 403.000000 403 79.012000 927 1538 1 chr4A.!!$F1 611
12 TraesCS7A01G023400 chr4A 729084352 729085017 665 True 270.500000 302 83.287000 3515 3899 2 chr4A.!!$R5 384
13 TraesCS7A01G023400 chr7D 10472341 10473779 1438 True 961.000000 961 78.993000 1864 3342 1 chr7D.!!$R1 1478
14 TraesCS7A01G023400 chr7D 10480528 10483548 3020 True 954.250000 2141 88.471250 923 3899 4 chr7D.!!$R2 2976
15 TraesCS7A01G023400 chr7D 10034997 10036075 1078 False 454.000000 749 84.497500 494 1514 2 chr7D.!!$F3 1020
16 TraesCS7A01G023400 chr7D 9088761 9089424 663 False 326.000000 326 76.219000 923 1576 1 chr7D.!!$F1 653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
183 184 0.109735 CGGCCGCTTTTTCTTTCTCC 60.110 55.0 14.67 0.0 0.0 3.71 F
1692 1933 0.036306 CCTACATTATGGGACGGGGC 59.964 60.0 0.00 0.0 0.0 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2241 2783 0.675633 ACATTGTCCCAAGCTTGTGC 59.324 50.0 24.35 14.05 40.05 4.57 R
3461 4322 0.039617 CTCATCCGCTAGCTTCGAGG 60.040 60.0 13.93 6.19 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.955614 ACTAACCTACGTGCATGACAC 58.044 47.619 14.17 3.38 46.45 3.67
33 34 5.905480 TGCATGACACATACGACATAATC 57.095 39.130 0.00 0.00 0.00 1.75
34 35 5.355596 TGCATGACACATACGACATAATCA 58.644 37.500 0.00 0.00 0.00 2.57
35 36 5.814705 TGCATGACACATACGACATAATCAA 59.185 36.000 0.00 0.00 0.00 2.57
36 37 6.129393 GCATGACACATACGACATAATCAAC 58.871 40.000 0.00 0.00 0.00 3.18
37 38 6.018751 GCATGACACATACGACATAATCAACT 60.019 38.462 0.00 0.00 0.00 3.16
38 39 6.885735 TGACACATACGACATAATCAACTG 57.114 37.500 0.00 0.00 0.00 3.16
39 40 6.626302 TGACACATACGACATAATCAACTGA 58.374 36.000 0.00 0.00 0.00 3.41
40 41 6.530181 TGACACATACGACATAATCAACTGAC 59.470 38.462 0.00 0.00 0.00 3.51
41 42 6.631016 ACACATACGACATAATCAACTGACT 58.369 36.000 0.00 0.00 0.00 3.41
42 43 6.752351 ACACATACGACATAATCAACTGACTC 59.248 38.462 0.00 0.00 0.00 3.36
43 44 6.751888 CACATACGACATAATCAACTGACTCA 59.248 38.462 0.00 0.00 0.00 3.41
44 45 7.275560 CACATACGACATAATCAACTGACTCAA 59.724 37.037 0.00 0.00 0.00 3.02
45 46 7.981789 ACATACGACATAATCAACTGACTCAAT 59.018 33.333 0.00 0.00 0.00 2.57
46 47 6.893958 ACGACATAATCAACTGACTCAATC 57.106 37.500 0.00 0.00 0.00 2.67
47 48 6.398095 ACGACATAATCAACTGACTCAATCA 58.602 36.000 0.00 0.00 35.45 2.57
48 49 7.044181 ACGACATAATCAACTGACTCAATCAT 58.956 34.615 0.00 0.00 36.48 2.45
49 50 7.010830 ACGACATAATCAACTGACTCAATCATG 59.989 37.037 0.00 0.00 36.48 3.07
50 51 7.223387 CGACATAATCAACTGACTCAATCATGA 59.777 37.037 0.00 0.00 36.48 3.07
51 52 8.975663 ACATAATCAACTGACTCAATCATGAT 57.024 30.769 1.18 1.18 38.26 2.45
52 53 9.404848 ACATAATCAACTGACTCAATCATGATT 57.595 29.630 15.36 15.36 44.12 2.57
56 57 8.618702 ATCAACTGACTCAATCATGATTATCC 57.381 34.615 20.32 10.54 34.66 2.59
57 58 7.799081 TCAACTGACTCAATCATGATTATCCT 58.201 34.615 20.32 3.97 36.48 3.24
58 59 8.927411 TCAACTGACTCAATCATGATTATCCTA 58.073 33.333 20.32 7.07 36.48 2.94
59 60 9.551734 CAACTGACTCAATCATGATTATCCTAA 57.448 33.333 20.32 4.96 36.48 2.69
60 61 9.553064 AACTGACTCAATCATGATTATCCTAAC 57.447 33.333 20.32 9.16 36.48 2.34
61 62 8.708378 ACTGACTCAATCATGATTATCCTAACA 58.292 33.333 20.32 12.52 36.48 2.41
62 63 9.722184 CTGACTCAATCATGATTATCCTAACAT 57.278 33.333 20.32 0.00 36.48 2.71
71 72 8.992073 TCATGATTATCCTAACATTCATTGTCG 58.008 33.333 0.00 0.00 37.68 4.35
72 73 7.728847 TGATTATCCTAACATTCATTGTCGG 57.271 36.000 0.00 0.00 37.68 4.79
73 74 6.204688 TGATTATCCTAACATTCATTGTCGGC 59.795 38.462 0.00 0.00 37.68 5.54
74 75 3.342377 TCCTAACATTCATTGTCGGCA 57.658 42.857 0.00 0.00 37.68 5.69
75 76 3.006940 TCCTAACATTCATTGTCGGCAC 58.993 45.455 0.00 0.00 37.68 5.01
124 125 2.217038 GCCCACAGACTCCAGGTCA 61.217 63.158 0.00 0.00 46.72 4.02
125 126 1.768684 GCCCACAGACTCCAGGTCAA 61.769 60.000 0.00 0.00 46.72 3.18
126 127 0.322975 CCCACAGACTCCAGGTCAAG 59.677 60.000 0.00 0.00 46.72 3.02
127 128 0.321122 CCACAGACTCCAGGTCAAGC 60.321 60.000 0.00 0.00 46.72 4.01
128 129 0.321122 CACAGACTCCAGGTCAAGCC 60.321 60.000 0.00 0.00 46.72 4.35
137 138 2.047179 GGTCAAGCCTGGTCGTCC 60.047 66.667 0.00 0.00 0.00 4.79
138 139 2.741092 GTCAAGCCTGGTCGTCCA 59.259 61.111 0.39 0.39 42.05 4.02
139 140 1.668151 GTCAAGCCTGGTCGTCCAC 60.668 63.158 0.00 0.00 39.03 4.02
140 141 1.837051 TCAAGCCTGGTCGTCCACT 60.837 57.895 0.00 0.00 39.03 4.00
141 142 1.374758 CAAGCCTGGTCGTCCACTC 60.375 63.158 0.00 0.00 39.03 3.51
142 143 2.932234 AAGCCTGGTCGTCCACTCG 61.932 63.158 0.00 0.00 39.03 4.18
143 144 3.681835 GCCTGGTCGTCCACTCGT 61.682 66.667 0.00 0.00 39.03 4.18
144 145 2.567049 CCTGGTCGTCCACTCGTC 59.433 66.667 0.00 0.00 39.03 4.20
145 146 2.567049 CTGGTCGTCCACTCGTCC 59.433 66.667 0.00 0.00 39.03 4.79
146 147 1.972223 CTGGTCGTCCACTCGTCCT 60.972 63.158 0.00 0.00 39.03 3.85
147 148 1.924320 CTGGTCGTCCACTCGTCCTC 61.924 65.000 0.00 0.00 39.03 3.71
148 149 2.698763 GGTCGTCCACTCGTCCTCC 61.699 68.421 0.00 0.00 36.45 4.30
149 150 1.970114 GTCGTCCACTCGTCCTCCA 60.970 63.158 0.00 0.00 0.00 3.86
150 151 1.001269 TCGTCCACTCGTCCTCCAT 60.001 57.895 0.00 0.00 0.00 3.41
151 152 0.611062 TCGTCCACTCGTCCTCCATT 60.611 55.000 0.00 0.00 0.00 3.16
152 153 0.246635 CGTCCACTCGTCCTCCATTT 59.753 55.000 0.00 0.00 0.00 2.32
153 154 1.736032 CGTCCACTCGTCCTCCATTTC 60.736 57.143 0.00 0.00 0.00 2.17
154 155 1.275291 GTCCACTCGTCCTCCATTTCA 59.725 52.381 0.00 0.00 0.00 2.69
155 156 2.093447 GTCCACTCGTCCTCCATTTCAT 60.093 50.000 0.00 0.00 0.00 2.57
156 157 2.571653 TCCACTCGTCCTCCATTTCATT 59.428 45.455 0.00 0.00 0.00 2.57
157 158 2.679837 CCACTCGTCCTCCATTTCATTG 59.320 50.000 0.00 0.00 0.00 2.82
158 159 3.338249 CACTCGTCCTCCATTTCATTGT 58.662 45.455 0.00 0.00 0.00 2.71
159 160 3.372206 CACTCGTCCTCCATTTCATTGTC 59.628 47.826 0.00 0.00 0.00 3.18
160 161 2.604914 CTCGTCCTCCATTTCATTGTCG 59.395 50.000 0.00 0.00 0.00 4.35
161 162 1.665679 CGTCCTCCATTTCATTGTCGG 59.334 52.381 0.00 0.00 0.00 4.79
162 163 1.401905 GTCCTCCATTTCATTGTCGGC 59.598 52.381 0.00 0.00 0.00 5.54
163 164 1.004161 TCCTCCATTTCATTGTCGGCA 59.996 47.619 0.00 0.00 0.00 5.69
164 165 1.133025 CCTCCATTTCATTGTCGGCAC 59.867 52.381 0.00 0.00 0.00 5.01
177 178 3.670377 GGCACGGCCGCTTTTTCT 61.670 61.111 28.58 0.00 39.62 2.52
178 179 2.335011 GCACGGCCGCTTTTTCTT 59.665 55.556 28.58 0.00 0.00 2.52
179 180 1.299850 GCACGGCCGCTTTTTCTTT 60.300 52.632 28.58 0.00 0.00 2.52
180 181 1.275471 GCACGGCCGCTTTTTCTTTC 61.275 55.000 28.58 0.00 0.00 2.62
181 182 0.310854 CACGGCCGCTTTTTCTTTCT 59.689 50.000 28.58 0.00 0.00 2.52
182 183 0.591659 ACGGCCGCTTTTTCTTTCTC 59.408 50.000 28.58 0.00 0.00 2.87
183 184 0.109735 CGGCCGCTTTTTCTTTCTCC 60.110 55.000 14.67 0.00 0.00 3.71
184 185 0.958822 GGCCGCTTTTTCTTTCTCCA 59.041 50.000 0.00 0.00 0.00 3.86
185 186 1.335964 GGCCGCTTTTTCTTTCTCCAC 60.336 52.381 0.00 0.00 0.00 4.02
186 187 1.609072 GCCGCTTTTTCTTTCTCCACT 59.391 47.619 0.00 0.00 0.00 4.00
187 188 2.605580 GCCGCTTTTTCTTTCTCCACTG 60.606 50.000 0.00 0.00 0.00 3.66
188 189 2.878406 CCGCTTTTTCTTTCTCCACTGA 59.122 45.455 0.00 0.00 0.00 3.41
189 190 3.058639 CCGCTTTTTCTTTCTCCACTGAG 60.059 47.826 0.00 0.00 40.17 3.35
190 191 3.561725 CGCTTTTTCTTTCTCCACTGAGT 59.438 43.478 0.00 0.00 39.75 3.41
191 192 4.319118 CGCTTTTTCTTTCTCCACTGAGTC 60.319 45.833 0.00 0.00 39.75 3.36
192 193 4.819088 GCTTTTTCTTTCTCCACTGAGTCT 59.181 41.667 0.00 0.00 39.75 3.24
193 194 5.049749 GCTTTTTCTTTCTCCACTGAGTCTC 60.050 44.000 0.00 0.00 39.75 3.36
194 195 4.608948 TTTCTTTCTCCACTGAGTCTCC 57.391 45.455 0.00 0.00 39.75 3.71
195 196 2.163509 TCTTTCTCCACTGAGTCTCCG 58.836 52.381 0.00 0.00 39.75 4.63
196 197 0.603569 TTTCTCCACTGAGTCTCCGC 59.396 55.000 0.00 0.00 39.75 5.54
197 198 1.251527 TTCTCCACTGAGTCTCCGCC 61.252 60.000 0.00 0.00 39.75 6.13
198 199 2.680352 TCCACTGAGTCTCCGCCC 60.680 66.667 0.00 0.00 0.00 6.13
199 200 2.997315 CCACTGAGTCTCCGCCCA 60.997 66.667 0.00 0.00 0.00 5.36
200 201 2.262915 CACTGAGTCTCCGCCCAC 59.737 66.667 0.00 0.00 0.00 4.61
201 202 2.203640 ACTGAGTCTCCGCCCACA 60.204 61.111 0.00 0.00 0.00 4.17
202 203 2.279069 ACTGAGTCTCCGCCCACAG 61.279 63.158 0.00 0.00 0.00 3.66
203 204 1.979155 CTGAGTCTCCGCCCACAGA 60.979 63.158 0.00 0.00 0.00 3.41
204 205 2.219325 CTGAGTCTCCGCCCACAGAC 62.219 65.000 0.00 0.00 39.58 3.51
205 206 2.118513 AGTCTCCGCCCACAGACT 59.881 61.111 0.00 0.00 43.81 3.24
206 207 1.979693 AGTCTCCGCCCACAGACTC 60.980 63.158 0.00 0.00 45.16 3.36
207 208 2.680352 TCTCCGCCCACAGACTCC 60.680 66.667 0.00 0.00 0.00 3.85
208 209 2.997315 CTCCGCCCACAGACTCCA 60.997 66.667 0.00 0.00 0.00 3.86
209 210 2.997315 TCCGCCCACAGACTCCAG 60.997 66.667 0.00 0.00 0.00 3.86
210 211 4.087892 CCGCCCACAGACTCCAGG 62.088 72.222 0.00 0.00 0.00 4.45
211 212 3.314331 CGCCCACAGACTCCAGGT 61.314 66.667 0.00 0.00 0.00 4.00
212 213 2.665603 GCCCACAGACTCCAGGTC 59.334 66.667 0.00 0.00 44.80 3.85
213 214 2.217038 GCCCACAGACTCCAGGTCA 61.217 63.158 0.00 0.00 46.72 4.02
214 215 1.768684 GCCCACAGACTCCAGGTCAA 61.769 60.000 0.00 0.00 46.72 3.18
215 216 0.322975 CCCACAGACTCCAGGTCAAG 59.677 60.000 0.00 0.00 46.72 3.02
216 217 0.321122 CCACAGACTCCAGGTCAAGC 60.321 60.000 0.00 0.00 46.72 4.01
217 218 0.321122 CACAGACTCCAGGTCAAGCC 60.321 60.000 0.00 0.00 46.72 4.35
226 227 2.047179 GGTCAAGCCTGGTCGTCC 60.047 66.667 0.00 0.00 0.00 4.79
227 228 2.741092 GTCAAGCCTGGTCGTCCA 59.259 61.111 0.39 0.39 42.05 4.02
228 229 1.668151 GTCAAGCCTGGTCGTCCAC 60.668 63.158 0.00 0.00 39.03 4.02
229 230 1.837051 TCAAGCCTGGTCGTCCACT 60.837 57.895 0.00 0.00 39.03 4.00
230 231 1.374758 CAAGCCTGGTCGTCCACTC 60.375 63.158 0.00 0.00 39.03 3.51
231 232 2.932234 AAGCCTGGTCGTCCACTCG 61.932 63.158 0.00 0.00 39.03 4.18
232 233 3.681835 GCCTGGTCGTCCACTCGT 61.682 66.667 0.00 0.00 39.03 4.18
233 234 2.567049 CCTGGTCGTCCACTCGTC 59.433 66.667 0.00 0.00 39.03 4.20
234 235 2.567049 CTGGTCGTCCACTCGTCC 59.433 66.667 0.00 0.00 39.03 4.79
235 236 1.972223 CTGGTCGTCCACTCGTCCT 60.972 63.158 0.00 0.00 39.03 3.85
236 237 1.924320 CTGGTCGTCCACTCGTCCTC 61.924 65.000 0.00 0.00 39.03 3.71
237 238 2.698763 GGTCGTCCACTCGTCCTCC 61.699 68.421 0.00 0.00 36.45 4.30
238 239 1.970114 GTCGTCCACTCGTCCTCCA 60.970 63.158 0.00 0.00 0.00 3.86
239 240 1.001269 TCGTCCACTCGTCCTCCAT 60.001 57.895 0.00 0.00 0.00 3.41
240 241 0.611062 TCGTCCACTCGTCCTCCATT 60.611 55.000 0.00 0.00 0.00 3.16
241 242 0.246635 CGTCCACTCGTCCTCCATTT 59.753 55.000 0.00 0.00 0.00 2.32
242 243 1.736032 CGTCCACTCGTCCTCCATTTC 60.736 57.143 0.00 0.00 0.00 2.17
243 244 1.275291 GTCCACTCGTCCTCCATTTCA 59.725 52.381 0.00 0.00 0.00 2.69
244 245 2.093447 GTCCACTCGTCCTCCATTTCAT 60.093 50.000 0.00 0.00 0.00 2.57
245 246 2.571653 TCCACTCGTCCTCCATTTCATT 59.428 45.455 0.00 0.00 0.00 2.57
246 247 2.679837 CCACTCGTCCTCCATTTCATTG 59.320 50.000 0.00 0.00 0.00 2.82
247 248 3.338249 CACTCGTCCTCCATTTCATTGT 58.662 45.455 0.00 0.00 0.00 2.71
248 249 3.372206 CACTCGTCCTCCATTTCATTGTC 59.628 47.826 0.00 0.00 0.00 3.18
249 250 2.604914 CTCGTCCTCCATTTCATTGTCG 59.395 50.000 0.00 0.00 0.00 4.35
250 251 1.665679 CGTCCTCCATTTCATTGTCGG 59.334 52.381 0.00 0.00 0.00 4.79
251 252 1.401905 GTCCTCCATTTCATTGTCGGC 59.598 52.381 0.00 0.00 0.00 5.54
252 253 1.004161 TCCTCCATTTCATTGTCGGCA 59.996 47.619 0.00 0.00 0.00 5.69
253 254 1.133025 CCTCCATTTCATTGTCGGCAC 59.867 52.381 0.00 0.00 0.00 5.01
266 267 3.670377 GGCACGGCCGCTTTTTCT 61.670 61.111 28.58 0.00 39.62 2.52
267 268 2.335011 GCACGGCCGCTTTTTCTT 59.665 55.556 28.58 0.00 0.00 2.52
268 269 1.299850 GCACGGCCGCTTTTTCTTT 60.300 52.632 28.58 0.00 0.00 2.52
269 270 1.275471 GCACGGCCGCTTTTTCTTTC 61.275 55.000 28.58 0.00 0.00 2.62
270 271 0.310854 CACGGCCGCTTTTTCTTTCT 59.689 50.000 28.58 0.00 0.00 2.52
271 272 0.591659 ACGGCCGCTTTTTCTTTCTC 59.408 50.000 28.58 0.00 0.00 2.87
272 273 0.109735 CGGCCGCTTTTTCTTTCTCC 60.110 55.000 14.67 0.00 0.00 3.71
273 274 0.958822 GGCCGCTTTTTCTTTCTCCA 59.041 50.000 0.00 0.00 0.00 3.86
274 275 1.335964 GGCCGCTTTTTCTTTCTCCAC 60.336 52.381 0.00 0.00 0.00 4.02
275 276 1.609072 GCCGCTTTTTCTTTCTCCACT 59.391 47.619 0.00 0.00 0.00 4.00
276 277 2.605580 GCCGCTTTTTCTTTCTCCACTG 60.606 50.000 0.00 0.00 0.00 3.66
277 278 2.878406 CCGCTTTTTCTTTCTCCACTGA 59.122 45.455 0.00 0.00 0.00 3.41
278 279 3.058639 CCGCTTTTTCTTTCTCCACTGAG 60.059 47.826 0.00 0.00 40.17 3.35
279 280 3.561725 CGCTTTTTCTTTCTCCACTGAGT 59.438 43.478 0.00 0.00 39.75 3.41
280 281 4.319118 CGCTTTTTCTTTCTCCACTGAGTC 60.319 45.833 0.00 0.00 39.75 3.36
281 282 4.819088 GCTTTTTCTTTCTCCACTGAGTCT 59.181 41.667 0.00 0.00 39.75 3.24
282 283 5.049749 GCTTTTTCTTTCTCCACTGAGTCTC 60.050 44.000 0.00 0.00 39.75 3.36
283 284 4.608948 TTTCTTTCTCCACTGAGTCTCC 57.391 45.455 0.00 0.00 39.75 3.71
284 285 2.163509 TCTTTCTCCACTGAGTCTCCG 58.836 52.381 0.00 0.00 39.75 4.63
285 286 0.603569 TTTCTCCACTGAGTCTCCGC 59.396 55.000 0.00 0.00 39.75 5.54
286 287 1.251527 TTCTCCACTGAGTCTCCGCC 61.252 60.000 0.00 0.00 39.75 6.13
287 288 2.680352 TCCACTGAGTCTCCGCCC 60.680 66.667 0.00 0.00 0.00 6.13
288 289 2.997315 CCACTGAGTCTCCGCCCA 60.997 66.667 0.00 0.00 0.00 5.36
289 290 2.262915 CACTGAGTCTCCGCCCAC 59.737 66.667 0.00 0.00 0.00 4.61
290 291 2.203640 ACTGAGTCTCCGCCCACA 60.204 61.111 0.00 0.00 0.00 4.17
291 292 2.279069 ACTGAGTCTCCGCCCACAG 61.279 63.158 0.00 0.00 0.00 3.66
292 293 1.979155 CTGAGTCTCCGCCCACAGA 60.979 63.158 0.00 0.00 0.00 3.41
293 294 2.219325 CTGAGTCTCCGCCCACAGAC 62.219 65.000 0.00 0.00 39.58 3.51
294 295 2.118513 AGTCTCCGCCCACAGACT 59.881 61.111 0.00 0.00 43.81 3.24
295 296 1.979693 AGTCTCCGCCCACAGACTC 60.980 63.158 0.00 0.00 45.16 3.36
296 297 2.680352 TCTCCGCCCACAGACTCC 60.680 66.667 0.00 0.00 0.00 3.85
297 298 2.997315 CTCCGCCCACAGACTCCA 60.997 66.667 0.00 0.00 0.00 3.86
298 299 2.997315 TCCGCCCACAGACTCCAG 60.997 66.667 0.00 0.00 0.00 3.86
299 300 4.087892 CCGCCCACAGACTCCAGG 62.088 72.222 0.00 0.00 0.00 4.45
300 301 3.314331 CGCCCACAGACTCCAGGT 61.314 66.667 0.00 0.00 0.00 4.00
301 302 2.665603 GCCCACAGACTCCAGGTC 59.334 66.667 0.00 0.00 44.80 3.85
302 303 2.217038 GCCCACAGACTCCAGGTCA 61.217 63.158 0.00 0.00 46.72 4.02
303 304 1.768684 GCCCACAGACTCCAGGTCAA 61.769 60.000 0.00 0.00 46.72 3.18
304 305 0.322975 CCCACAGACTCCAGGTCAAG 59.677 60.000 0.00 0.00 46.72 3.02
305 306 0.321122 CCACAGACTCCAGGTCAAGC 60.321 60.000 0.00 0.00 46.72 4.01
306 307 0.321122 CACAGACTCCAGGTCAAGCC 60.321 60.000 0.00 0.00 46.72 4.35
315 316 2.047179 GGTCAAGCCTGGTCGTCC 60.047 66.667 0.00 0.00 0.00 4.79
316 317 2.741092 GTCAAGCCTGGTCGTCCA 59.259 61.111 0.39 0.39 42.05 4.02
317 318 1.668151 GTCAAGCCTGGTCGTCCAC 60.668 63.158 0.00 0.00 39.03 4.02
487 520 0.250901 AGCCATCCTTTGACGCTTGT 60.251 50.000 0.00 0.00 0.00 3.16
524 563 2.343426 GCTTCCCCCGGCAGAAAAG 61.343 63.158 0.00 0.00 0.00 2.27
551 590 2.413310 ACCGTAAGCCAATAAGGTGG 57.587 50.000 0.00 0.00 36.47 4.61
612 651 1.469308 GTGCTAGATCCGTATCCTCCG 59.531 57.143 0.00 0.00 31.98 4.63
614 653 1.469308 GCTAGATCCGTATCCTCCGTG 59.531 57.143 0.00 0.00 31.98 4.94
629 678 0.687354 CCGTGGATCTAATCAGGGGG 59.313 60.000 0.00 0.00 35.85 5.40
693 754 0.316204 GAGAACAAAGGTCCGTCCGA 59.684 55.000 0.00 0.00 41.99 4.55
696 757 2.148768 GAACAAAGGTCCGTCCGATTT 58.851 47.619 0.00 0.00 41.99 2.17
697 758 1.519408 ACAAAGGTCCGTCCGATTTG 58.481 50.000 0.00 0.00 41.99 2.32
698 759 1.202722 ACAAAGGTCCGTCCGATTTGT 60.203 47.619 0.09 0.09 38.73 2.83
699 760 1.877443 CAAAGGTCCGTCCGATTTGTT 59.123 47.619 0.00 0.00 41.99 2.83
700 761 2.265589 AAGGTCCGTCCGATTTGTTT 57.734 45.000 0.00 0.00 41.99 2.83
701 762 1.804601 AGGTCCGTCCGATTTGTTTC 58.195 50.000 0.00 0.00 41.99 2.78
702 763 1.071071 AGGTCCGTCCGATTTGTTTCA 59.929 47.619 0.00 0.00 41.99 2.69
703 764 1.463444 GGTCCGTCCGATTTGTTTCAG 59.537 52.381 0.00 0.00 0.00 3.02
704 765 2.409975 GTCCGTCCGATTTGTTTCAGA 58.590 47.619 0.00 0.00 0.00 3.27
707 768 4.628333 GTCCGTCCGATTTGTTTCAGATTA 59.372 41.667 0.00 0.00 0.00 1.75
715 776 8.504005 TCCGATTTGTTTCAGATTAAGACTTTC 58.496 33.333 0.00 0.00 0.00 2.62
735 796 9.176181 GACTTTCTATATCGATGTCTCTTTCAC 57.824 37.037 8.54 0.00 0.00 3.18
751 812 7.487829 GTCTCTTTCACACTTCATCAGATAGAC 59.512 40.741 0.00 0.00 0.00 2.59
850 928 8.888716 GTCCTCTCTTTCAGAATTTTTAGATCC 58.111 37.037 0.00 0.00 0.00 3.36
858 936 7.596749 TCAGAATTTTTAGATCCAAGTCGAC 57.403 36.000 7.70 7.70 0.00 4.20
1133 1330 5.956068 AATTTCTCTGAAGCTCAGGAAAC 57.044 39.130 19.35 0.00 44.39 2.78
1208 1406 5.770162 ACCCTGAACTGAATTAACCAGAAAG 59.230 40.000 12.18 7.12 35.69 2.62
1209 1407 5.335976 CCCTGAACTGAATTAACCAGAAAGC 60.336 44.000 12.18 0.00 35.69 3.51
1210 1408 5.474876 CCTGAACTGAATTAACCAGAAAGCT 59.525 40.000 12.18 0.00 35.69 3.74
1212 1410 6.061441 TGAACTGAATTAACCAGAAAGCTGA 58.939 36.000 12.18 0.00 45.17 4.26
1213 1411 5.948992 ACTGAATTAACCAGAAAGCTGAC 57.051 39.130 12.18 0.00 45.17 3.51
1215 1413 5.239525 ACTGAATTAACCAGAAAGCTGACAC 59.760 40.000 12.18 0.00 45.17 3.67
1216 1414 5.129634 TGAATTAACCAGAAAGCTGACACA 58.870 37.500 0.00 0.00 45.17 3.72
1257 1491 1.598130 GTGCTTCCAAGTGGTCGCT 60.598 57.895 12.44 0.00 36.34 4.93
1315 1549 3.926616 TCCTGGACAAGAATTTCGAGAC 58.073 45.455 0.00 0.00 0.00 3.36
1472 1706 3.420893 CTTTGAGTACATGCCCAAAGGA 58.579 45.455 15.84 0.00 40.80 3.36
1488 1722 2.634815 AGGATGCCTTGCTGACTATG 57.365 50.000 0.00 0.00 0.00 2.23
1518 1753 7.255871 CCGGTAAAGTCAGATTAGCCTTATAGT 60.256 40.741 0.00 0.00 0.00 2.12
1528 1764 7.852945 CAGATTAGCCTTATAGTTTTCTTTGCG 59.147 37.037 0.00 0.00 0.00 4.85
1644 1885 0.690077 AATGGTACTCCCTCCGTCCC 60.690 60.000 0.00 0.00 0.00 4.46
1645 1886 1.882189 ATGGTACTCCCTCCGTCCCA 61.882 60.000 0.00 0.00 0.00 4.37
1652 1893 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
1659 1900 3.323691 TCCGTCCCATAATGTAGGATGTG 59.676 47.826 0.00 0.00 35.30 3.21
1664 1905 6.458206 CGTCCCATAATGTAGGATGTGTTTTG 60.458 42.308 0.00 0.00 32.90 2.44
1692 1933 0.036306 CCTACATTATGGGACGGGGC 59.964 60.000 0.00 0.00 0.00 5.80
1693 1934 0.320421 CTACATTATGGGACGGGGCG 60.320 60.000 0.00 0.00 0.00 6.13
1694 1935 0.759812 TACATTATGGGACGGGGCGA 60.760 55.000 0.00 0.00 0.00 5.54
1795 2123 1.729276 CTCAGAGAGAGGAGCGCAG 59.271 63.158 11.47 0.00 40.84 5.18
1811 2139 5.965918 GGAGCGCAGTAACAAATATCTTTTC 59.034 40.000 11.47 0.00 0.00 2.29
2079 2621 5.048573 GTGGACCACACGTTACCAAATAATT 60.049 40.000 20.14 0.00 40.85 1.40
2119 2661 4.034048 GCGTACATTATCTTCACCAACAGG 59.966 45.833 0.00 0.00 0.00 4.00
2155 2697 4.536090 TGGACCTCAAACCTCAGAATGTAT 59.464 41.667 0.00 0.00 37.40 2.29
2241 2783 2.294791 CCAGAGTCGGGCTATTACTGAG 59.705 54.545 0.00 0.00 0.00 3.35
2368 2916 5.901552 ACAGACTACACCAAAATTTTGTGG 58.098 37.500 25.25 19.35 41.00 4.17
2453 3001 4.104696 AGTTTGGGCGTTATTGTAATGC 57.895 40.909 5.55 5.55 0.00 3.56
2806 3650 1.271543 TGCATTTGGTCTCTGGTCCTG 60.272 52.381 0.00 0.00 0.00 3.86
2839 3684 4.720946 GCTGCGTGTTTTTGTTTTTCTGTC 60.721 41.667 0.00 0.00 0.00 3.51
2922 3771 0.695924 TGGACGGACATGTTTGGGAT 59.304 50.000 0.00 0.00 0.00 3.85
3125 3974 7.201617 GGCAGGTACAATCACTCAATAGTAAAC 60.202 40.741 0.00 0.00 33.48 2.01
3150 3999 9.909644 ACGTATGTGATCTACCAGTAATTATTC 57.090 33.333 0.00 0.00 0.00 1.75
3166 4015 8.049117 AGTAATTATTCAGTGATGTGTCATGGT 58.951 33.333 0.00 0.00 36.60 3.55
3208 4059 2.026641 GATAAGCATTGCCTCCAAGCA 58.973 47.619 4.70 0.00 42.17 3.91
3294 4145 0.755698 GGAGGTGGAGCAGGACGATA 60.756 60.000 0.00 0.00 0.00 2.92
3387 4245 1.164411 TGGCAAGCTTACCATGTTCG 58.836 50.000 14.76 0.00 0.00 3.95
3567 4681 2.690778 GCAACCATCGGCACTGGAC 61.691 63.158 9.15 0.00 37.22 4.02
3602 4716 1.980765 TGGCAAGGTGAGACAAGAGAT 59.019 47.619 0.00 0.00 0.00 2.75
3656 4797 1.523758 CTTACCTTATCCATGGGCGC 58.476 55.000 13.02 0.00 0.00 6.53
3748 4897 2.432444 TGGCGGATGAACTAAAGTTGG 58.568 47.619 0.00 0.00 38.56 3.77
3812 4961 2.191641 GGTGGAGCAGGAGGATGC 59.808 66.667 0.00 0.00 46.88 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 5.355596 TGATTATGTCGTATGTGTCATGCA 58.644 37.500 0.00 0.00 0.00 3.96
12 13 5.905480 TGATTATGTCGTATGTGTCATGC 57.095 39.130 0.00 0.00 0.00 4.06
13 14 7.222611 TCAGTTGATTATGTCGTATGTGTCATG 59.777 37.037 0.00 0.00 0.00 3.07
14 15 7.222805 GTCAGTTGATTATGTCGTATGTGTCAT 59.777 37.037 0.00 0.00 0.00 3.06
15 16 6.530181 GTCAGTTGATTATGTCGTATGTGTCA 59.470 38.462 0.00 0.00 0.00 3.58
16 17 6.752351 AGTCAGTTGATTATGTCGTATGTGTC 59.248 38.462 0.00 0.00 0.00 3.67
17 18 6.631016 AGTCAGTTGATTATGTCGTATGTGT 58.369 36.000 0.00 0.00 0.00 3.72
18 19 6.751888 TGAGTCAGTTGATTATGTCGTATGTG 59.248 38.462 0.00 0.00 0.00 3.21
19 20 6.863275 TGAGTCAGTTGATTATGTCGTATGT 58.137 36.000 0.00 0.00 0.00 2.29
20 21 7.755582 TTGAGTCAGTTGATTATGTCGTATG 57.244 36.000 0.00 0.00 0.00 2.39
21 22 8.197439 TGATTGAGTCAGTTGATTATGTCGTAT 58.803 33.333 0.00 0.00 31.80 3.06
22 23 7.543756 TGATTGAGTCAGTTGATTATGTCGTA 58.456 34.615 0.00 0.00 31.80 3.43
23 24 6.398095 TGATTGAGTCAGTTGATTATGTCGT 58.602 36.000 0.00 0.00 31.80 4.34
24 25 6.892310 TGATTGAGTCAGTTGATTATGTCG 57.108 37.500 0.00 0.00 31.80 4.35
25 26 8.429493 TCATGATTGAGTCAGTTGATTATGTC 57.571 34.615 0.00 0.00 40.92 3.06
26 27 8.975663 ATCATGATTGAGTCAGTTGATTATGT 57.024 30.769 1.18 0.00 40.92 2.29
30 31 9.064706 GGATAATCATGATTGAGTCAGTTGATT 57.935 33.333 27.59 15.68 43.66 2.57
31 32 8.438373 AGGATAATCATGATTGAGTCAGTTGAT 58.562 33.333 27.59 11.17 40.92 2.57
32 33 7.799081 AGGATAATCATGATTGAGTCAGTTGA 58.201 34.615 27.59 6.90 40.92 3.18
33 34 9.551734 TTAGGATAATCATGATTGAGTCAGTTG 57.448 33.333 27.59 0.00 40.92 3.16
34 35 9.553064 GTTAGGATAATCATGATTGAGTCAGTT 57.447 33.333 27.59 14.56 40.92 3.16
35 36 8.708378 TGTTAGGATAATCATGATTGAGTCAGT 58.292 33.333 27.59 15.83 40.92 3.41
36 37 9.722184 ATGTTAGGATAATCATGATTGAGTCAG 57.278 33.333 27.59 0.00 40.92 3.51
45 46 8.992073 CGACAATGAATGTTAGGATAATCATGA 58.008 33.333 0.00 0.00 44.12 3.07
46 47 8.232513 CCGACAATGAATGTTAGGATAATCATG 58.767 37.037 0.00 0.00 44.12 3.07
47 48 7.094634 GCCGACAATGAATGTTAGGATAATCAT 60.095 37.037 7.81 0.00 44.12 2.45
48 49 6.204688 GCCGACAATGAATGTTAGGATAATCA 59.795 38.462 7.81 0.00 44.12 2.57
49 50 6.204688 TGCCGACAATGAATGTTAGGATAATC 59.795 38.462 7.81 0.00 44.12 1.75
50 51 6.017109 GTGCCGACAATGAATGTTAGGATAAT 60.017 38.462 7.81 0.00 44.12 1.28
51 52 5.295787 GTGCCGACAATGAATGTTAGGATAA 59.704 40.000 7.81 0.00 44.12 1.75
52 53 4.814234 GTGCCGACAATGAATGTTAGGATA 59.186 41.667 7.81 0.00 44.12 2.59
53 54 3.627577 GTGCCGACAATGAATGTTAGGAT 59.372 43.478 7.81 0.00 44.12 3.24
54 55 3.006940 GTGCCGACAATGAATGTTAGGA 58.993 45.455 7.81 0.00 44.12 2.94
55 56 2.223021 CGTGCCGACAATGAATGTTAGG 60.223 50.000 0.00 0.00 44.12 2.69
56 57 2.223021 CCGTGCCGACAATGAATGTTAG 60.223 50.000 0.00 0.00 44.12 2.34
57 58 1.735018 CCGTGCCGACAATGAATGTTA 59.265 47.619 0.00 0.00 44.12 2.41
58 59 0.521291 CCGTGCCGACAATGAATGTT 59.479 50.000 0.00 0.00 44.12 2.71
60 61 1.226379 GCCGTGCCGACAATGAATG 60.226 57.895 0.00 0.00 0.00 2.67
61 62 2.406616 GGCCGTGCCGACAATGAAT 61.407 57.895 0.00 0.00 39.62 2.57
62 63 3.053291 GGCCGTGCCGACAATGAA 61.053 61.111 0.00 0.00 39.62 2.57
71 72 2.693250 AAAGAAAAAGCGGCCGTGCC 62.693 55.000 28.70 10.48 46.75 5.01
72 73 1.275471 GAAAGAAAAAGCGGCCGTGC 61.275 55.000 28.70 11.32 0.00 5.34
73 74 0.310854 AGAAAGAAAAAGCGGCCGTG 59.689 50.000 28.70 0.00 0.00 4.94
74 75 0.591659 GAGAAAGAAAAAGCGGCCGT 59.408 50.000 28.70 11.01 0.00 5.68
75 76 0.109735 GGAGAAAGAAAAAGCGGCCG 60.110 55.000 24.05 24.05 0.00 6.13
76 77 0.958822 TGGAGAAAGAAAAAGCGGCC 59.041 50.000 0.00 0.00 0.00 6.13
77 78 1.609072 AGTGGAGAAAGAAAAAGCGGC 59.391 47.619 0.00 0.00 0.00 6.53
78 79 2.878406 TCAGTGGAGAAAGAAAAAGCGG 59.122 45.455 0.00 0.00 0.00 5.52
79 80 3.561725 ACTCAGTGGAGAAAGAAAAAGCG 59.438 43.478 0.00 0.00 44.26 4.68
80 81 4.819088 AGACTCAGTGGAGAAAGAAAAAGC 59.181 41.667 0.00 0.00 44.26 3.51
81 82 5.468409 GGAGACTCAGTGGAGAAAGAAAAAG 59.532 44.000 4.53 0.00 44.26 2.27
82 83 5.368989 GGAGACTCAGTGGAGAAAGAAAAA 58.631 41.667 4.53 0.00 44.26 1.94
83 84 4.501571 CGGAGACTCAGTGGAGAAAGAAAA 60.502 45.833 4.53 0.00 44.26 2.29
129 130 1.970114 GAGGACGAGTGGACGACCA 60.970 63.158 1.37 1.37 46.57 4.02
130 131 2.698763 GGAGGACGAGTGGACGACC 61.699 68.421 0.00 0.00 45.13 4.79
131 132 1.313812 ATGGAGGACGAGTGGACGAC 61.314 60.000 0.00 0.00 37.03 4.34
132 133 0.611062 AATGGAGGACGAGTGGACGA 60.611 55.000 0.00 0.00 37.03 4.20
133 134 0.246635 AAATGGAGGACGAGTGGACG 59.753 55.000 0.00 0.00 39.31 4.79
134 135 1.275291 TGAAATGGAGGACGAGTGGAC 59.725 52.381 0.00 0.00 0.00 4.02
135 136 1.639722 TGAAATGGAGGACGAGTGGA 58.360 50.000 0.00 0.00 0.00 4.02
136 137 2.679837 CAATGAAATGGAGGACGAGTGG 59.320 50.000 0.00 0.00 0.00 4.00
137 138 3.338249 ACAATGAAATGGAGGACGAGTG 58.662 45.455 0.00 0.00 0.00 3.51
138 139 3.600388 GACAATGAAATGGAGGACGAGT 58.400 45.455 0.00 0.00 0.00 4.18
139 140 2.604914 CGACAATGAAATGGAGGACGAG 59.395 50.000 0.00 0.00 0.00 4.18
140 141 2.616960 CGACAATGAAATGGAGGACGA 58.383 47.619 0.00 0.00 0.00 4.20
141 142 1.665679 CCGACAATGAAATGGAGGACG 59.334 52.381 0.00 0.00 0.00 4.79
142 143 1.401905 GCCGACAATGAAATGGAGGAC 59.598 52.381 0.00 0.00 0.00 3.85
143 144 1.004161 TGCCGACAATGAAATGGAGGA 59.996 47.619 0.00 0.00 0.00 3.71
144 145 1.133025 GTGCCGACAATGAAATGGAGG 59.867 52.381 0.00 0.00 0.00 4.30
145 146 1.202065 CGTGCCGACAATGAAATGGAG 60.202 52.381 0.00 0.00 0.00 3.86
146 147 0.801872 CGTGCCGACAATGAAATGGA 59.198 50.000 0.00 0.00 0.00 3.41
147 148 0.179166 CCGTGCCGACAATGAAATGG 60.179 55.000 0.00 0.00 0.00 3.16
148 149 0.798009 GCCGTGCCGACAATGAAATG 60.798 55.000 0.00 0.00 0.00 2.32
149 150 1.506262 GCCGTGCCGACAATGAAAT 59.494 52.632 0.00 0.00 0.00 2.17
150 151 2.622011 GGCCGTGCCGACAATGAAA 61.622 57.895 0.00 0.00 39.62 2.69
151 152 3.053291 GGCCGTGCCGACAATGAA 61.053 61.111 0.00 0.00 39.62 2.57
160 161 2.693250 AAAGAAAAAGCGGCCGTGCC 62.693 55.000 28.70 10.48 46.75 5.01
161 162 1.275471 GAAAGAAAAAGCGGCCGTGC 61.275 55.000 28.70 11.32 0.00 5.34
162 163 0.310854 AGAAAGAAAAAGCGGCCGTG 59.689 50.000 28.70 0.00 0.00 4.94
163 164 0.591659 GAGAAAGAAAAAGCGGCCGT 59.408 50.000 28.70 11.01 0.00 5.68
164 165 0.109735 GGAGAAAGAAAAAGCGGCCG 60.110 55.000 24.05 24.05 0.00 6.13
165 166 0.958822 TGGAGAAAGAAAAAGCGGCC 59.041 50.000 0.00 0.00 0.00 6.13
166 167 1.609072 AGTGGAGAAAGAAAAAGCGGC 59.391 47.619 0.00 0.00 0.00 6.53
167 168 2.878406 TCAGTGGAGAAAGAAAAAGCGG 59.122 45.455 0.00 0.00 0.00 5.52
168 169 3.561725 ACTCAGTGGAGAAAGAAAAAGCG 59.438 43.478 0.00 0.00 44.26 4.68
169 170 4.819088 AGACTCAGTGGAGAAAGAAAAAGC 59.181 41.667 0.00 0.00 44.26 3.51
170 171 5.468409 GGAGACTCAGTGGAGAAAGAAAAAG 59.532 44.000 4.53 0.00 44.26 2.27
171 172 5.368989 GGAGACTCAGTGGAGAAAGAAAAA 58.631 41.667 4.53 0.00 44.26 1.94
172 173 4.501571 CGGAGACTCAGTGGAGAAAGAAAA 60.502 45.833 4.53 0.00 44.26 2.29
173 174 3.005897 CGGAGACTCAGTGGAGAAAGAAA 59.994 47.826 4.53 0.00 44.26 2.52
174 175 2.558795 CGGAGACTCAGTGGAGAAAGAA 59.441 50.000 4.53 0.00 44.26 2.52
175 176 2.163509 CGGAGACTCAGTGGAGAAAGA 58.836 52.381 4.53 0.00 44.26 2.52
176 177 1.403514 GCGGAGACTCAGTGGAGAAAG 60.404 57.143 4.53 0.00 44.26 2.62
177 178 0.603569 GCGGAGACTCAGTGGAGAAA 59.396 55.000 4.53 0.00 44.26 2.52
178 179 1.251527 GGCGGAGACTCAGTGGAGAA 61.252 60.000 4.53 0.00 44.26 2.87
179 180 1.679305 GGCGGAGACTCAGTGGAGA 60.679 63.158 4.53 0.00 44.26 3.71
180 181 2.716017 GGGCGGAGACTCAGTGGAG 61.716 68.421 4.53 0.00 46.96 3.86
181 182 2.680352 GGGCGGAGACTCAGTGGA 60.680 66.667 4.53 0.00 32.70 4.02
182 183 2.997315 TGGGCGGAGACTCAGTGG 60.997 66.667 4.53 0.00 32.70 4.00
183 184 2.262915 GTGGGCGGAGACTCAGTG 59.737 66.667 4.53 0.00 32.70 3.66
184 185 2.203640 TGTGGGCGGAGACTCAGT 60.204 61.111 4.53 0.00 32.70 3.41
185 186 1.979155 TCTGTGGGCGGAGACTCAG 60.979 63.158 4.53 0.85 38.35 3.35
186 187 2.117423 TCTGTGGGCGGAGACTCA 59.883 61.111 4.53 0.00 32.70 3.41
187 188 1.979693 AGTCTGTGGGCGGAGACTC 60.980 63.158 6.02 0.00 44.62 3.36
188 189 2.118513 AGTCTGTGGGCGGAGACT 59.881 61.111 6.02 6.02 43.37 3.24
189 190 2.574399 GAGTCTGTGGGCGGAGAC 59.426 66.667 0.00 0.00 39.18 3.36
190 191 2.680352 GGAGTCTGTGGGCGGAGA 60.680 66.667 0.00 0.00 0.00 3.71
191 192 2.997315 TGGAGTCTGTGGGCGGAG 60.997 66.667 0.00 0.00 0.00 4.63
192 193 2.997315 CTGGAGTCTGTGGGCGGA 60.997 66.667 0.00 0.00 0.00 5.54
193 194 4.087892 CCTGGAGTCTGTGGGCGG 62.088 72.222 0.00 0.00 0.00 6.13
194 195 3.302347 GACCTGGAGTCTGTGGGCG 62.302 68.421 0.00 0.00 42.69 6.13
195 196 1.768684 TTGACCTGGAGTCTGTGGGC 61.769 60.000 0.00 0.00 46.46 5.36
196 197 0.322975 CTTGACCTGGAGTCTGTGGG 59.677 60.000 0.00 0.00 46.46 4.61
197 198 0.321122 GCTTGACCTGGAGTCTGTGG 60.321 60.000 0.00 0.00 46.46 4.17
198 199 0.321122 GGCTTGACCTGGAGTCTGTG 60.321 60.000 0.00 0.00 46.46 3.66
199 200 2.062070 GGCTTGACCTGGAGTCTGT 58.938 57.895 0.00 0.00 46.46 3.41
209 210 2.047179 GGACGACCAGGCTTGACC 60.047 66.667 0.00 0.00 39.61 4.02
210 211 2.741092 TGGACGACCAGGCTTGAC 59.259 61.111 1.37 0.00 41.77 3.18
218 219 1.970114 GAGGACGAGTGGACGACCA 60.970 63.158 1.37 1.37 46.57 4.02
219 220 2.698763 GGAGGACGAGTGGACGACC 61.699 68.421 0.00 0.00 45.13 4.79
220 221 1.313812 ATGGAGGACGAGTGGACGAC 61.314 60.000 0.00 0.00 37.03 4.34
221 222 0.611062 AATGGAGGACGAGTGGACGA 60.611 55.000 0.00 0.00 37.03 4.20
222 223 0.246635 AAATGGAGGACGAGTGGACG 59.753 55.000 0.00 0.00 39.31 4.79
223 224 1.275291 TGAAATGGAGGACGAGTGGAC 59.725 52.381 0.00 0.00 0.00 4.02
224 225 1.639722 TGAAATGGAGGACGAGTGGA 58.360 50.000 0.00 0.00 0.00 4.02
225 226 2.679837 CAATGAAATGGAGGACGAGTGG 59.320 50.000 0.00 0.00 0.00 4.00
226 227 3.338249 ACAATGAAATGGAGGACGAGTG 58.662 45.455 0.00 0.00 0.00 3.51
227 228 3.600388 GACAATGAAATGGAGGACGAGT 58.400 45.455 0.00 0.00 0.00 4.18
228 229 2.604914 CGACAATGAAATGGAGGACGAG 59.395 50.000 0.00 0.00 0.00 4.18
229 230 2.616960 CGACAATGAAATGGAGGACGA 58.383 47.619 0.00 0.00 0.00 4.20
230 231 1.665679 CCGACAATGAAATGGAGGACG 59.334 52.381 0.00 0.00 0.00 4.79
231 232 1.401905 GCCGACAATGAAATGGAGGAC 59.598 52.381 0.00 0.00 0.00 3.85
232 233 1.004161 TGCCGACAATGAAATGGAGGA 59.996 47.619 0.00 0.00 0.00 3.71
233 234 1.133025 GTGCCGACAATGAAATGGAGG 59.867 52.381 0.00 0.00 0.00 4.30
234 235 1.202065 CGTGCCGACAATGAAATGGAG 60.202 52.381 0.00 0.00 0.00 3.86
235 236 0.801872 CGTGCCGACAATGAAATGGA 59.198 50.000 0.00 0.00 0.00 3.41
236 237 0.179166 CCGTGCCGACAATGAAATGG 60.179 55.000 0.00 0.00 0.00 3.16
237 238 0.798009 GCCGTGCCGACAATGAAATG 60.798 55.000 0.00 0.00 0.00 2.32
238 239 1.506262 GCCGTGCCGACAATGAAAT 59.494 52.632 0.00 0.00 0.00 2.17
239 240 2.622011 GGCCGTGCCGACAATGAAA 61.622 57.895 0.00 0.00 39.62 2.69
240 241 3.053291 GGCCGTGCCGACAATGAA 61.053 61.111 0.00 0.00 39.62 2.57
249 250 2.693250 AAAGAAAAAGCGGCCGTGCC 62.693 55.000 28.70 10.48 46.75 5.01
250 251 1.275471 GAAAGAAAAAGCGGCCGTGC 61.275 55.000 28.70 11.32 0.00 5.34
251 252 0.310854 AGAAAGAAAAAGCGGCCGTG 59.689 50.000 28.70 0.00 0.00 4.94
252 253 0.591659 GAGAAAGAAAAAGCGGCCGT 59.408 50.000 28.70 11.01 0.00 5.68
253 254 0.109735 GGAGAAAGAAAAAGCGGCCG 60.110 55.000 24.05 24.05 0.00 6.13
254 255 0.958822 TGGAGAAAGAAAAAGCGGCC 59.041 50.000 0.00 0.00 0.00 6.13
255 256 1.609072 AGTGGAGAAAGAAAAAGCGGC 59.391 47.619 0.00 0.00 0.00 6.53
256 257 2.878406 TCAGTGGAGAAAGAAAAAGCGG 59.122 45.455 0.00 0.00 0.00 5.52
257 258 3.561725 ACTCAGTGGAGAAAGAAAAAGCG 59.438 43.478 0.00 0.00 44.26 4.68
258 259 4.819088 AGACTCAGTGGAGAAAGAAAAAGC 59.181 41.667 0.00 0.00 44.26 3.51
259 260 5.468409 GGAGACTCAGTGGAGAAAGAAAAAG 59.532 44.000 4.53 0.00 44.26 2.27
260 261 5.368989 GGAGACTCAGTGGAGAAAGAAAAA 58.631 41.667 4.53 0.00 44.26 1.94
261 262 4.501571 CGGAGACTCAGTGGAGAAAGAAAA 60.502 45.833 4.53 0.00 44.26 2.29
262 263 3.005897 CGGAGACTCAGTGGAGAAAGAAA 59.994 47.826 4.53 0.00 44.26 2.52
263 264 2.558795 CGGAGACTCAGTGGAGAAAGAA 59.441 50.000 4.53 0.00 44.26 2.52
264 265 2.163509 CGGAGACTCAGTGGAGAAAGA 58.836 52.381 4.53 0.00 44.26 2.52
265 266 1.403514 GCGGAGACTCAGTGGAGAAAG 60.404 57.143 4.53 0.00 44.26 2.62
266 267 0.603569 GCGGAGACTCAGTGGAGAAA 59.396 55.000 4.53 0.00 44.26 2.52
267 268 1.251527 GGCGGAGACTCAGTGGAGAA 61.252 60.000 4.53 0.00 44.26 2.87
268 269 1.679305 GGCGGAGACTCAGTGGAGA 60.679 63.158 4.53 0.00 44.26 3.71
269 270 2.716017 GGGCGGAGACTCAGTGGAG 61.716 68.421 4.53 0.00 46.96 3.86
270 271 2.680352 GGGCGGAGACTCAGTGGA 60.680 66.667 4.53 0.00 32.70 4.02
271 272 2.997315 TGGGCGGAGACTCAGTGG 60.997 66.667 4.53 0.00 32.70 4.00
272 273 2.262915 GTGGGCGGAGACTCAGTG 59.737 66.667 4.53 0.00 32.70 3.66
273 274 2.203640 TGTGGGCGGAGACTCAGT 60.204 61.111 4.53 0.00 32.70 3.41
274 275 1.979155 TCTGTGGGCGGAGACTCAG 60.979 63.158 4.53 0.85 38.35 3.35
275 276 2.117423 TCTGTGGGCGGAGACTCA 59.883 61.111 4.53 0.00 32.70 3.41
276 277 1.979693 AGTCTGTGGGCGGAGACTC 60.980 63.158 6.02 0.00 44.62 3.36
277 278 2.118513 AGTCTGTGGGCGGAGACT 59.881 61.111 6.02 6.02 43.37 3.24
278 279 2.574399 GAGTCTGTGGGCGGAGAC 59.426 66.667 0.00 0.00 39.18 3.36
279 280 2.680352 GGAGTCTGTGGGCGGAGA 60.680 66.667 0.00 0.00 0.00 3.71
280 281 2.997315 TGGAGTCTGTGGGCGGAG 60.997 66.667 0.00 0.00 0.00 4.63
281 282 2.997315 CTGGAGTCTGTGGGCGGA 60.997 66.667 0.00 0.00 0.00 5.54
282 283 4.087892 CCTGGAGTCTGTGGGCGG 62.088 72.222 0.00 0.00 0.00 6.13
283 284 3.302347 GACCTGGAGTCTGTGGGCG 62.302 68.421 0.00 0.00 42.69 6.13
284 285 1.768684 TTGACCTGGAGTCTGTGGGC 61.769 60.000 0.00 0.00 46.46 5.36
285 286 0.322975 CTTGACCTGGAGTCTGTGGG 59.677 60.000 0.00 0.00 46.46 4.61
286 287 0.321122 GCTTGACCTGGAGTCTGTGG 60.321 60.000 0.00 0.00 46.46 4.17
287 288 0.321122 GGCTTGACCTGGAGTCTGTG 60.321 60.000 0.00 0.00 46.46 3.66
288 289 2.062070 GGCTTGACCTGGAGTCTGT 58.938 57.895 0.00 0.00 46.46 3.41
298 299 2.047179 GGACGACCAGGCTTGACC 60.047 66.667 0.00 0.00 39.61 4.02
299 300 2.741092 TGGACGACCAGGCTTGAC 59.259 61.111 1.37 0.00 41.77 3.18
307 308 1.970114 GAGGACGAGTGGACGACCA 60.970 63.158 1.37 1.37 46.57 4.02
308 309 2.698763 GGAGGACGAGTGGACGACC 61.699 68.421 0.00 0.00 45.13 4.79
309 310 1.313812 ATGGAGGACGAGTGGACGAC 61.314 60.000 0.00 0.00 37.03 4.34
310 311 0.611062 AATGGAGGACGAGTGGACGA 60.611 55.000 0.00 0.00 37.03 4.20
311 312 0.246635 AAATGGAGGACGAGTGGACG 59.753 55.000 0.00 0.00 39.31 4.79
312 313 1.275291 TGAAATGGAGGACGAGTGGAC 59.725 52.381 0.00 0.00 0.00 4.02
313 314 1.639722 TGAAATGGAGGACGAGTGGA 58.360 50.000 0.00 0.00 0.00 4.02
314 315 2.679837 CAATGAAATGGAGGACGAGTGG 59.320 50.000 0.00 0.00 0.00 4.00
315 316 3.338249 ACAATGAAATGGAGGACGAGTG 58.662 45.455 0.00 0.00 0.00 3.51
316 317 3.600388 GACAATGAAATGGAGGACGAGT 58.400 45.455 0.00 0.00 0.00 4.18
317 318 2.604914 CGACAATGAAATGGAGGACGAG 59.395 50.000 0.00 0.00 0.00 4.18
521 560 1.833630 GGCTTACGGTAGGTACCCTTT 59.166 52.381 8.74 0.00 43.51 3.11
524 563 1.194218 TTGGCTTACGGTAGGTACCC 58.806 55.000 8.74 0.00 43.51 3.69
544 583 3.714798 GTTCCCATCTATCACCCACCTTA 59.285 47.826 0.00 0.00 0.00 2.69
551 590 2.036089 GGACGAGTTCCCATCTATCACC 59.964 54.545 0.00 0.00 38.70 4.02
612 651 1.349357 GAGCCCCCTGATTAGATCCAC 59.651 57.143 0.00 0.00 0.00 4.02
614 653 0.988063 GGAGCCCCCTGATTAGATCC 59.012 60.000 0.00 0.00 0.00 3.36
629 678 6.609237 AAAAAGCATTGAAGAAAAAGGAGC 57.391 33.333 0.00 0.00 0.00 4.70
667 725 5.395990 GGACGGACCTTTGTTCTCCATTATA 60.396 44.000 0.00 0.00 35.41 0.98
668 726 4.514401 GACGGACCTTTGTTCTCCATTAT 58.486 43.478 0.00 0.00 0.00 1.28
707 768 9.959749 GAAAGAGACATCGATATAGAAAGTCTT 57.040 33.333 18.50 9.77 38.67 3.01
715 776 8.131731 TGAAGTGTGAAAGAGACATCGATATAG 58.868 37.037 0.00 0.00 0.00 1.31
718 779 6.267496 TGAAGTGTGAAAGAGACATCGATA 57.733 37.500 0.00 0.00 0.00 2.92
724 785 5.535753 TCTGATGAAGTGTGAAAGAGACA 57.464 39.130 0.00 0.00 0.00 3.41
735 796 9.409312 GAAGTGATATGTCTATCTGATGAAGTG 57.591 37.037 0.00 0.00 35.69 3.16
850 928 4.230314 TCTGAACTCTGAAGTCGACTTG 57.770 45.455 34.23 21.52 36.11 3.16
858 936 7.825681 TCTATCTGAAGTTCTGAACTCTGAAG 58.174 38.462 22.24 16.17 41.91 3.02
925 1106 1.727880 TCATTAGCCGTACGTGCAAAC 59.272 47.619 24.11 4.94 0.00 2.93
1208 1406 5.003692 TCTCACATAGAATCTGTGTCAGC 57.996 43.478 9.74 0.00 43.53 4.26
1209 1407 5.462729 GCATCTCACATAGAATCTGTGTCAG 59.537 44.000 9.74 7.19 43.53 3.51
1210 1408 5.105228 TGCATCTCACATAGAATCTGTGTCA 60.105 40.000 9.74 0.00 43.53 3.58
1212 1410 5.349061 TGCATCTCACATAGAATCTGTGT 57.651 39.130 6.83 6.83 43.53 3.72
1213 1411 4.750598 CCTGCATCTCACATAGAATCTGTG 59.249 45.833 5.43 5.43 44.26 3.66
1215 1413 4.040095 TCCCTGCATCTCACATAGAATCTG 59.960 45.833 0.00 0.00 37.89 2.90
1216 1414 4.229639 TCCCTGCATCTCACATAGAATCT 58.770 43.478 0.00 0.00 37.89 2.40
1257 1491 1.226974 GCTGCTTCACCGCGATAGA 60.227 57.895 8.23 0.00 39.76 1.98
1315 1549 2.878429 CGAGACAGGTGACCTCGG 59.122 66.667 0.00 0.00 44.11 4.63
1472 1706 2.158842 GGAGACATAGTCAGCAAGGCAT 60.159 50.000 0.00 0.00 34.60 4.40
1488 1722 4.361420 GCTAATCTGACTTTACCGGAGAC 58.639 47.826 9.46 0.00 0.00 3.36
1546 1786 5.071250 TGGACTGTAGTTGGTAGACATTTGT 59.929 40.000 0.00 0.00 0.00 2.83
1659 1900 7.280205 CCCATAATGTAGGACTAGTGTCAAAAC 59.720 40.741 0.00 0.00 44.61 2.43
1664 1905 5.278364 CGTCCCATAATGTAGGACTAGTGTC 60.278 48.000 0.00 0.00 46.53 3.67
1692 1933 4.551388 AGAACAGAGCTGAAAACTACTCG 58.449 43.478 4.21 0.00 34.31 4.18
1693 1934 9.078753 GTATAAGAACAGAGCTGAAAACTACTC 57.921 37.037 4.21 0.00 0.00 2.59
1694 1935 8.035984 GGTATAAGAACAGAGCTGAAAACTACT 58.964 37.037 4.21 0.00 0.00 2.57
1795 2123 8.573035 TCCACAACAGGAAAAGATATTTGTTAC 58.427 33.333 0.00 0.00 33.93 2.50
1811 2139 4.747108 CGATTAAGCTCTATCCACAACAGG 59.253 45.833 0.00 0.00 0.00 4.00
2023 2565 1.202510 AGATGCATCTGCGAAGAGGAC 60.203 52.381 28.21 0.69 45.83 3.85
2025 2567 1.598132 CAAGATGCATCTGCGAAGAGG 59.402 52.381 29.34 0.00 45.83 3.69
2079 2621 1.048724 CGCCCTCACAGATCCCCTTA 61.049 60.000 0.00 0.00 0.00 2.69
2119 2661 6.039382 GGTTTGAGGTCCATGTGAATAATACC 59.961 42.308 0.00 0.00 0.00 2.73
2155 2697 3.505680 GGCGCCATGTTATCATCCAATAA 59.494 43.478 24.80 0.00 31.15 1.40
2241 2783 0.675633 ACATTGTCCCAAGCTTGTGC 59.324 50.000 24.35 14.05 40.05 4.57
2317 2861 7.172190 CGATTAGGTGAATGAAGAGTATGCAAT 59.828 37.037 0.00 0.00 0.00 3.56
2368 2916 2.551270 TCTGGTGCCATATATCCCCTC 58.449 52.381 0.00 0.00 0.00 4.30
2765 3451 7.517614 TGCAAGGATTACTATCACAAACAAA 57.482 32.000 0.00 0.00 32.09 2.83
2780 3467 3.094572 CCAGAGACCAAATGCAAGGATT 58.905 45.455 9.85 0.00 0.00 3.01
2839 3684 3.535561 AGAAGGACGACATGCATTTAGG 58.464 45.455 0.00 0.00 0.00 2.69
2922 3771 8.892723 GTTCCAATGATGTGTGACTATTTGATA 58.107 33.333 0.00 0.00 0.00 2.15
3125 3974 9.908152 TGAATAATTACTGGTAGATCACATACG 57.092 33.333 0.00 0.00 0.00 3.06
3130 3979 9.988815 ATCACTGAATAATTACTGGTAGATCAC 57.011 33.333 0.00 0.00 0.00 3.06
3150 3999 5.381174 AAAATGACCATGACACATCACTG 57.619 39.130 0.00 0.00 37.79 3.66
3175 4026 8.748412 AGGCAATGCTTATCTGTAACAAAAATA 58.252 29.630 4.82 0.00 0.00 1.40
3185 4036 3.285484 CTTGGAGGCAATGCTTATCTGT 58.715 45.455 4.82 0.00 0.00 3.41
3208 4059 4.339247 CCATTAATTTCAACTCATCCGCCT 59.661 41.667 0.00 0.00 0.00 5.52
3294 4145 1.340795 CCTCTCCTGGCTCAATTTGCT 60.341 52.381 0.00 0.00 0.00 3.91
3387 4245 1.657094 CGTATTGTACTCGTTGCCCAC 59.343 52.381 0.00 0.00 0.00 4.61
3461 4322 0.039617 CTCATCCGCTAGCTTCGAGG 60.040 60.000 13.93 6.19 0.00 4.63
3567 4681 1.144936 GCCATCCTCCTTCTCCACG 59.855 63.158 0.00 0.00 0.00 4.94
3602 4716 3.507162 TGGTTGATGCCTTTCTCTTGA 57.493 42.857 0.00 0.00 0.00 3.02
3643 4784 1.621814 GTACTAGGCGCCCATGGATAA 59.378 52.381 26.15 0.00 0.00 1.75
3647 4788 0.108585 ATTGTACTAGGCGCCCATGG 59.891 55.000 26.15 10.62 0.00 3.66
3702 4843 2.002586 GAGAAGCTTATCTGCGCACAA 58.997 47.619 13.83 0.00 38.13 3.33
3703 4844 1.645034 GAGAAGCTTATCTGCGCACA 58.355 50.000 13.83 0.00 38.13 4.57
3704 4845 0.933796 GGAGAAGCTTATCTGCGCAC 59.066 55.000 19.81 0.00 38.13 5.34
3706 4847 1.596727 CTTGGAGAAGCTTATCTGCGC 59.403 52.381 19.81 0.00 40.33 6.09
3707 4848 3.170791 TCTTGGAGAAGCTTATCTGCG 57.829 47.619 19.81 8.88 40.33 5.18
3748 4897 4.924305 ATGGTGCAACATAATCATCCAC 57.076 40.909 17.60 0.00 39.98 4.02
3812 4961 2.575532 TCTTCTGTTGGCTCACTTTGG 58.424 47.619 0.00 0.00 0.00 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.