Multiple sequence alignment - TraesCS7A01G022400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G022400 chr7A 100.000 3088 0 0 1 3088 8895598 8892511 0.000000e+00 5703.0
1 TraesCS7A01G022400 chr7A 85.632 174 24 1 1260 1433 230836134 230836306 6.800000e-42 182.0
2 TraesCS7A01G022400 chr7A 88.750 80 4 4 362 437 8895273 8895195 3.280000e-15 93.5
3 TraesCS7A01G022400 chr7A 93.333 45 2 1 2516 2559 537673429 537673473 7.150000e-07 65.8
4 TraesCS7A01G022400 chr7A 100.000 29 0 0 2320 2348 3270882 3270854 2.000000e-03 54.7
5 TraesCS7A01G022400 chr7A 100.000 29 0 0 2320 2348 3296778 3296750 2.000000e-03 54.7
6 TraesCS7A01G022400 chr7D 87.782 1416 103 28 703 2092 8463697 8462326 0.000000e+00 1592.0
7 TraesCS7A01G022400 chr7D 86.518 1031 63 27 2065 3088 8458010 8457049 0.000000e+00 1064.0
8 TraesCS7A01G022400 chr7D 90.070 715 37 9 2219 2928 8460725 8460040 0.000000e+00 896.0
9 TraesCS7A01G022400 chr7D 91.845 233 19 0 2856 3088 8383811 8383579 2.970000e-85 326.0
10 TraesCS7A01G022400 chr7D 93.000 100 5 1 703 800 8464487 8464388 8.920000e-31 145.0
11 TraesCS7A01G022400 chr7D 76.389 288 49 11 2695 2971 170998785 170999064 1.490000e-28 137.0
12 TraesCS7A01G022400 chr7D 97.059 68 2 0 2065 2132 8461145 8461078 7.000000e-22 115.0
13 TraesCS7A01G022400 chr4A 82.816 1513 147 53 666 2088 731352944 731354433 0.000000e+00 1249.0
14 TraesCS7A01G022400 chr4A 81.982 333 36 9 1 316 731352276 731352601 8.490000e-66 261.0
15 TraesCS7A01G022400 chr4A 87.379 206 25 1 1606 1810 731372987 731373192 5.150000e-58 235.0
16 TraesCS7A01G022400 chr6D 76.334 431 67 23 2583 2982 32874745 32874319 6.750000e-47 198.0
17 TraesCS7A01G022400 chr6D 92.105 38 2 1 2311 2348 946994 947030 6.000000e-03 52.8
18 TraesCS7A01G022400 chr7B 75.795 409 82 11 2573 2971 137479775 137480176 1.130000e-44 191.0
19 TraesCS7A01G022400 chr7B 100.000 28 0 0 2322 2349 599774950 599774923 6.000000e-03 52.8
20 TraesCS7A01G022400 chr5A 86.286 175 23 1 1263 1437 146284515 146284688 4.070000e-44 189.0
21 TraesCS7A01G022400 chr5A 86.286 175 23 1 1263 1437 478931903 478931730 4.070000e-44 189.0
22 TraesCS7A01G022400 chr5A 85.714 175 24 1 1263 1437 195722006 195721833 1.890000e-42 183.0
23 TraesCS7A01G022400 chr5A 84.831 178 26 1 1260 1437 514822005 514822181 8.800000e-41 178.0
24 TraesCS7A01G022400 chrUn 85.714 175 24 1 1263 1437 62367946 62367773 1.890000e-42 183.0
25 TraesCS7A01G022400 chr6A 85.714 175 24 1 1263 1437 414039824 414039997 1.890000e-42 183.0
26 TraesCS7A01G022400 chr3A 85.143 175 25 1 1263 1437 708175087 708174914 8.800000e-41 178.0
27 TraesCS7A01G022400 chr3A 87.640 89 11 0 1619 1707 170659025 170659113 1.510000e-18 104.0
28 TraesCS7A01G022400 chr3A 93.333 45 2 1 2516 2559 596488904 596488948 7.150000e-07 65.8
29 TraesCS7A01G022400 chr3D 76.887 212 40 8 1501 1709 451885626 451885831 9.050000e-21 111.0
30 TraesCS7A01G022400 chr1A 75.000 260 52 10 1507 1761 495192878 495192627 1.170000e-19 108.0
31 TraesCS7A01G022400 chr2D 73.802 313 62 13 1501 1800 27837098 27837403 4.210000e-19 106.0
32 TraesCS7A01G022400 chr2D 94.444 36 2 0 2319 2354 606722558 606722523 4.300000e-04 56.5
33 TraesCS7A01G022400 chr2A 74.539 271 54 10 1448 1709 29989772 29990036 1.510000e-18 104.0
34 TraesCS7A01G022400 chr3B 75.472 212 43 8 1501 1709 593163868 593164073 9.120000e-16 95.3
35 TraesCS7A01G022400 chr4B 100.000 28 0 0 2321 2348 609519401 609519428 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G022400 chr7A 8892511 8895598 3087 True 2898.25 5703 94.3750 1 3088 2 chr7A.!!$R3 3087
1 TraesCS7A01G022400 chr7D 8457049 8464487 7438 True 762.40 1592 90.8858 703 3088 5 chr7D.!!$R2 2385
2 TraesCS7A01G022400 chr4A 731352276 731354433 2157 False 755.00 1249 82.3990 1 2088 2 chr4A.!!$F2 2087

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
992 1872 0.034337 TACGAGCAACACCCACCTTC 59.966 55.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2715 7996 0.173708 ATCAAGGCGTTCTCGAGGAC 59.826 55.0 14.31 14.31 39.71 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.929376 GCTTTGTGCTTGCACTTGC 59.071 52.632 23.53 19.55 39.14 4.01
44 45 2.433604 ACTTGCATCTGATGATCCGAGT 59.566 45.455 21.30 14.44 31.81 4.18
47 48 2.223900 TGCATCTGATGATCCGAGTGAC 60.224 50.000 21.30 0.24 0.00 3.67
50 51 0.101219 CTGATGATCCGAGTGACGCA 59.899 55.000 0.00 0.00 41.07 5.24
98 99 4.269183 TGTTTATGATGTGGATCGCCTTT 58.731 39.130 0.00 0.00 34.31 3.11
110 126 1.376812 CGCCTTTGGGGTGTACTCC 60.377 63.158 5.35 5.35 40.52 3.85
114 130 1.279271 CCTTTGGGGTGTACTCCAGAG 59.721 57.143 15.56 13.15 35.69 3.35
121 137 2.567615 GGGTGTACTCCAGAGACAATGT 59.432 50.000 15.56 0.00 0.00 2.71
125 141 2.936919 ACTCCAGAGACAATGTTGCA 57.063 45.000 0.70 0.00 0.00 4.08
129 145 3.753815 TCCAGAGACAATGTTGCATGAA 58.246 40.909 0.00 0.00 0.00 2.57
164 180 7.808856 GGAAAAGTAAAACATTGCGGTGTAATA 59.191 33.333 0.00 0.00 0.00 0.98
167 183 8.550710 AAGTAAAACATTGCGGTGTAATACTA 57.449 30.769 14.01 0.00 34.88 1.82
168 184 8.726870 AGTAAAACATTGCGGTGTAATACTAT 57.273 30.769 12.89 0.00 34.52 2.12
174 190 8.319143 ACATTGCGGTGTAATACTATATTTCC 57.681 34.615 0.00 0.00 0.00 3.13
182 198 7.148239 GGTGTAATACTATATTTCCCATGCTGC 60.148 40.741 0.00 0.00 0.00 5.25
188 204 6.006449 ACTATATTTCCCATGCTGCTTTAGG 58.994 40.000 0.00 0.00 0.00 2.69
190 206 2.128771 TTCCCATGCTGCTTTAGGTC 57.871 50.000 0.00 0.00 0.00 3.85
195 211 2.821969 CCATGCTGCTTTAGGTCTGTTT 59.178 45.455 0.00 0.00 0.00 2.83
196 212 4.009675 CCATGCTGCTTTAGGTCTGTTTA 58.990 43.478 0.00 0.00 0.00 2.01
199 215 6.318648 CCATGCTGCTTTAGGTCTGTTTATTA 59.681 38.462 0.00 0.00 0.00 0.98
203 219 7.447238 TGCTGCTTTAGGTCTGTTTATTACTTT 59.553 33.333 0.00 0.00 0.00 2.66
204 220 8.297426 GCTGCTTTAGGTCTGTTTATTACTTTT 58.703 33.333 0.00 0.00 0.00 2.27
236 252 0.681733 CTGTGGTGCTAGTGAGGTGT 59.318 55.000 0.00 0.00 0.00 4.16
239 255 1.344763 GTGGTGCTAGTGAGGTGTCTT 59.655 52.381 0.00 0.00 0.00 3.01
240 256 1.344438 TGGTGCTAGTGAGGTGTCTTG 59.656 52.381 0.00 0.00 0.00 3.02
264 281 7.007116 TGTATGTTGGCTAGATAGAGTGAGAT 58.993 38.462 0.00 0.00 0.00 2.75
266 283 4.517075 TGTTGGCTAGATAGAGTGAGATCG 59.483 45.833 0.00 0.00 0.00 3.69
279 296 0.659957 GAGATCGCTCATTGTTGGGC 59.340 55.000 0.00 0.00 46.49 5.36
299 316 3.866910 GGCTTATTTGATGTGTTGGCATG 59.133 43.478 0.00 0.00 0.00 4.06
300 317 4.497300 GCTTATTTGATGTGTTGGCATGT 58.503 39.130 0.00 0.00 0.00 3.21
303 320 6.254157 GCTTATTTGATGTGTTGGCATGTTAG 59.746 38.462 0.00 0.00 0.00 2.34
340 370 3.760684 GTGGAATGAATGAGTCAGCCTTT 59.239 43.478 0.00 0.00 40.43 3.11
342 372 4.943705 TGGAATGAATGAGTCAGCCTTTAC 59.056 41.667 0.00 0.00 40.43 2.01
343 373 4.943705 GGAATGAATGAGTCAGCCTTTACA 59.056 41.667 0.00 0.00 40.43 2.41
344 374 5.163713 GGAATGAATGAGTCAGCCTTTACAC 60.164 44.000 0.00 0.00 40.43 2.90
345 375 3.674997 TGAATGAGTCAGCCTTTACACC 58.325 45.455 0.00 0.00 0.00 4.16
346 376 3.327757 TGAATGAGTCAGCCTTTACACCT 59.672 43.478 0.00 0.00 0.00 4.00
347 377 4.530553 TGAATGAGTCAGCCTTTACACCTA 59.469 41.667 0.00 0.00 0.00 3.08
348 378 3.955650 TGAGTCAGCCTTTACACCTAC 57.044 47.619 0.00 0.00 0.00 3.18
349 379 3.236047 TGAGTCAGCCTTTACACCTACA 58.764 45.455 0.00 0.00 0.00 2.74
378 408 6.809630 AAAAGAGAATGAGTCAGCCTTTAC 57.190 37.500 0.00 0.00 0.00 2.01
379 409 5.489792 AAGAGAATGAGTCAGCCTTTACA 57.510 39.130 0.00 0.00 0.00 2.41
380 410 4.826556 AGAGAATGAGTCAGCCTTTACAC 58.173 43.478 0.00 0.00 0.00 2.90
381 411 3.935828 GAGAATGAGTCAGCCTTTACACC 59.064 47.826 0.00 0.00 0.00 4.16
382 412 3.584848 AGAATGAGTCAGCCTTTACACCT 59.415 43.478 0.00 0.00 0.00 4.00
383 413 4.777896 AGAATGAGTCAGCCTTTACACCTA 59.222 41.667 0.00 0.00 0.00 3.08
384 414 3.955650 TGAGTCAGCCTTTACACCTAC 57.044 47.619 0.00 0.00 0.00 3.18
385 415 3.236047 TGAGTCAGCCTTTACACCTACA 58.764 45.455 0.00 0.00 0.00 2.74
386 416 3.644265 TGAGTCAGCCTTTACACCTACAA 59.356 43.478 0.00 0.00 0.00 2.41
387 417 4.101898 TGAGTCAGCCTTTACACCTACAAA 59.898 41.667 0.00 0.00 0.00 2.83
388 418 5.043737 AGTCAGCCTTTACACCTACAAAA 57.956 39.130 0.00 0.00 0.00 2.44
389 419 5.063880 AGTCAGCCTTTACACCTACAAAAG 58.936 41.667 0.00 0.00 0.00 2.27
390 420 5.061179 GTCAGCCTTTACACCTACAAAAGA 58.939 41.667 0.00 0.00 33.05 2.52
391 421 5.529800 GTCAGCCTTTACACCTACAAAAGAA 59.470 40.000 0.00 0.00 33.05 2.52
392 422 6.038936 GTCAGCCTTTACACCTACAAAAGAAA 59.961 38.462 0.00 0.00 33.05 2.52
393 423 6.603997 TCAGCCTTTACACCTACAAAAGAAAA 59.396 34.615 0.00 0.00 33.05 2.29
394 424 7.122948 TCAGCCTTTACACCTACAAAAGAAAAA 59.877 33.333 0.00 0.00 33.05 1.94
395 425 7.435192 CAGCCTTTACACCTACAAAAGAAAAAG 59.565 37.037 0.00 0.00 33.05 2.27
396 426 7.340999 AGCCTTTACACCTACAAAAGAAAAAGA 59.659 33.333 0.00 0.00 33.05 2.52
397 427 7.648112 GCCTTTACACCTACAAAAGAAAAAGAG 59.352 37.037 0.00 0.00 33.05 2.85
398 428 8.899771 CCTTTACACCTACAAAAGAAAAAGAGA 58.100 33.333 0.00 0.00 33.05 3.10
402 432 8.519799 ACACCTACAAAAGAAAAAGAGAATGA 57.480 30.769 0.00 0.00 0.00 2.57
403 433 8.624776 ACACCTACAAAAGAAAAAGAGAATGAG 58.375 33.333 0.00 0.00 0.00 2.90
404 434 8.624776 CACCTACAAAAGAAAAAGAGAATGAGT 58.375 33.333 0.00 0.00 0.00 3.41
405 435 8.841300 ACCTACAAAAGAAAAAGAGAATGAGTC 58.159 33.333 0.00 0.00 0.00 3.36
406 436 8.840321 CCTACAAAAGAAAAAGAGAATGAGTCA 58.160 33.333 0.00 0.00 0.00 3.41
407 437 9.875675 CTACAAAAGAAAAAGAGAATGAGTCAG 57.124 33.333 0.00 0.00 0.00 3.51
408 438 7.199078 ACAAAAGAAAAAGAGAATGAGTCAGC 58.801 34.615 0.00 0.00 0.00 4.26
409 439 5.956068 AAGAAAAAGAGAATGAGTCAGCC 57.044 39.130 0.00 0.00 0.00 4.85
410 440 5.240013 AGAAAAAGAGAATGAGTCAGCCT 57.760 39.130 0.00 0.00 0.00 4.58
411 441 5.629125 AGAAAAAGAGAATGAGTCAGCCTT 58.371 37.500 0.00 0.00 0.00 4.35
412 442 6.067350 AGAAAAAGAGAATGAGTCAGCCTTT 58.933 36.000 0.00 2.94 0.00 3.11
413 443 5.956068 AAAAGAGAATGAGTCAGCCTTTC 57.044 39.130 0.00 0.00 0.00 2.62
414 444 4.630644 AAGAGAATGAGTCAGCCTTTCA 57.369 40.909 0.00 0.00 0.00 2.69
415 445 4.840716 AGAGAATGAGTCAGCCTTTCAT 57.159 40.909 0.00 0.00 33.18 2.57
416 446 5.946942 AGAGAATGAGTCAGCCTTTCATA 57.053 39.130 0.00 0.00 31.64 2.15
417 447 5.916318 AGAGAATGAGTCAGCCTTTCATAG 58.084 41.667 0.00 0.00 31.64 2.23
418 448 5.660417 AGAGAATGAGTCAGCCTTTCATAGA 59.340 40.000 0.00 0.00 31.64 1.98
419 449 6.155910 AGAGAATGAGTCAGCCTTTCATAGAA 59.844 38.462 0.00 0.00 31.64 2.10
420 450 6.715280 AGAATGAGTCAGCCTTTCATAGAAA 58.285 36.000 0.00 0.00 31.64 2.52
421 451 7.170965 AGAATGAGTCAGCCTTTCATAGAAAA 58.829 34.615 0.00 0.00 31.64 2.29
422 452 7.667219 AGAATGAGTCAGCCTTTCATAGAAAAA 59.333 33.333 0.00 0.00 31.64 1.94
462 492 6.313905 GTGAAGACTACAACATAATGTGGGAG 59.686 42.308 0.00 0.00 38.26 4.30
464 494 4.225042 AGACTACAACATAATGTGGGAGCA 59.775 41.667 0.00 0.00 35.58 4.26
541 573 8.999431 TCTTTGGAAAATGTTCTAGTGTACATC 58.001 33.333 0.00 0.00 33.93 3.06
545 577 7.148255 TGGAAAATGTTCTAGTGTACATCATGC 60.148 37.037 0.00 6.63 33.93 4.06
546 578 6.683974 AAATGTTCTAGTGTACATCATGCC 57.316 37.500 0.00 0.00 33.93 4.40
549 581 4.019771 TGTTCTAGTGTACATCATGCCCAA 60.020 41.667 0.00 0.00 0.00 4.12
550 582 4.406648 TCTAGTGTACATCATGCCCAAG 57.593 45.455 0.00 0.00 0.00 3.61
560 601 1.003580 TCATGCCCAAGTCAGAAGGTC 59.996 52.381 0.00 0.00 0.00 3.85
565 606 2.876079 GCCCAAGTCAGAAGGTCGAATT 60.876 50.000 0.00 0.00 0.00 2.17
570 611 5.444122 CAAGTCAGAAGGTCGAATTGTTTC 58.556 41.667 0.00 0.00 33.69 2.78
571 612 4.703897 AGTCAGAAGGTCGAATTGTTTCA 58.296 39.130 0.00 0.00 0.00 2.69
580 621 5.534654 AGGTCGAATTGTTTCAGAAAATGGA 59.465 36.000 0.00 0.00 0.00 3.41
582 623 6.363357 GGTCGAATTGTTTCAGAAAATGGAAG 59.637 38.462 0.00 0.00 0.00 3.46
583 624 6.918022 GTCGAATTGTTTCAGAAAATGGAAGT 59.082 34.615 0.00 0.00 0.00 3.01
594 635 9.621629 TTCAGAAAATGGAAGTAGTCTTTTGTA 57.378 29.630 0.00 0.00 33.64 2.41
648 689 5.402398 GCACAAAGTCAACTCTTCAAGTTT 58.598 37.500 0.00 0.00 46.26 2.66
649 690 5.863935 GCACAAAGTCAACTCTTCAAGTTTT 59.136 36.000 0.00 0.00 46.26 2.43
650 691 6.366061 GCACAAAGTCAACTCTTCAAGTTTTT 59.634 34.615 0.00 0.00 46.26 1.94
651 692 7.410835 GCACAAAGTCAACTCTTCAAGTTTTTC 60.411 37.037 0.00 0.00 46.26 2.29
652 693 7.809806 CACAAAGTCAACTCTTCAAGTTTTTCT 59.190 33.333 0.00 0.00 46.26 2.52
653 694 8.360390 ACAAAGTCAACTCTTCAAGTTTTTCTT 58.640 29.630 0.00 0.00 46.26 2.52
654 695 9.840427 CAAAGTCAACTCTTCAAGTTTTTCTTA 57.160 29.630 0.00 0.00 46.26 2.10
656 697 9.449719 AAGTCAACTCTTCAAGTTTTTCTTAGA 57.550 29.630 0.00 0.00 46.26 2.10
657 698 9.620259 AGTCAACTCTTCAAGTTTTTCTTAGAT 57.380 29.630 0.00 0.00 46.26 1.98
658 699 9.657121 GTCAACTCTTCAAGTTTTTCTTAGATG 57.343 33.333 0.00 0.00 46.26 2.90
659 700 9.396022 TCAACTCTTCAAGTTTTTCTTAGATGT 57.604 29.630 0.00 0.00 46.26 3.06
770 1617 1.303236 CCCATGAGCGGTGGAACAA 60.303 57.895 0.00 0.00 44.16 2.83
800 1661 2.046411 ACGTGCGCCCATGAATGA 60.046 55.556 4.18 0.00 0.00 2.57
806 1667 1.134753 TGCGCCCATGAATGAATGAAC 59.865 47.619 4.18 0.00 0.00 3.18
807 1668 1.861202 GCGCCCATGAATGAATGAACG 60.861 52.381 0.00 0.00 0.00 3.95
808 1669 1.670295 CGCCCATGAATGAATGAACGA 59.330 47.619 0.00 0.00 31.41 3.85
809 1670 2.097304 CGCCCATGAATGAATGAACGAA 59.903 45.455 0.00 0.00 31.41 3.85
810 1671 3.427368 CGCCCATGAATGAATGAACGAAA 60.427 43.478 0.00 0.00 31.41 3.46
840 1701 1.545651 CCGGCCAGGAGAAAAGAAACT 60.546 52.381 2.24 0.00 45.00 2.66
844 1705 3.004839 GGCCAGGAGAAAAGAAACTGAAC 59.995 47.826 0.00 0.00 0.00 3.18
869 1731 3.423154 GCGCCCAACTCGTTCAGG 61.423 66.667 0.00 0.00 0.00 3.86
875 1737 1.302033 CAACTCGTTCAGGCAGGCT 60.302 57.895 0.00 0.00 0.00 4.58
904 1770 1.140804 GCGCCAACCAACTTTGTGT 59.859 52.632 0.00 0.00 0.00 3.72
910 1777 2.539476 CAACCAACTTTGTGTTCTGCC 58.461 47.619 0.00 0.00 36.63 4.85
913 1780 2.092103 ACCAACTTTGTGTTCTGCCCTA 60.092 45.455 0.00 0.00 36.63 3.53
945 1812 1.310933 ATTCTCCTGCGACGTACGGT 61.311 55.000 21.06 5.07 42.83 4.83
976 1847 1.578293 GCGTACGACATCGATCTACG 58.422 55.000 21.65 12.47 41.52 3.51
987 1867 0.172578 CGATCTACGAGCAACACCCA 59.827 55.000 0.00 0.00 45.77 4.51
988 1868 1.641577 GATCTACGAGCAACACCCAC 58.358 55.000 0.00 0.00 0.00 4.61
989 1869 0.249398 ATCTACGAGCAACACCCACC 59.751 55.000 0.00 0.00 0.00 4.61
990 1870 0.830444 TCTACGAGCAACACCCACCT 60.830 55.000 0.00 0.00 0.00 4.00
991 1871 0.034896 CTACGAGCAACACCCACCTT 59.965 55.000 0.00 0.00 0.00 3.50
992 1872 0.034337 TACGAGCAACACCCACCTTC 59.966 55.000 0.00 0.00 0.00 3.46
1014 1896 1.596934 GAACATGGCGAGGACTCCA 59.403 57.895 0.00 0.00 35.28 3.86
1176 2067 2.654877 CACGCCACCTTCTACGGT 59.345 61.111 0.00 0.00 37.93 4.83
1182 2073 0.604578 CCACCTTCTACGGTTCCGAA 59.395 55.000 18.28 1.22 34.29 4.30
1183 2074 1.001181 CCACCTTCTACGGTTCCGAAA 59.999 52.381 18.28 7.98 34.29 3.46
1184 2075 2.334838 CACCTTCTACGGTTCCGAAAG 58.665 52.381 18.28 15.54 34.29 2.62
1229 2125 3.195002 CATAGCACACCCGCGTGG 61.195 66.667 8.42 8.42 44.86 4.94
1243 2139 2.281484 GTGGACCATGCACACCGT 60.281 61.111 0.00 0.00 38.66 4.83
1244 2140 1.004320 GTGGACCATGCACACCGTA 60.004 57.895 0.00 0.00 38.66 4.02
1245 2141 0.392461 GTGGACCATGCACACCGTAT 60.392 55.000 0.00 0.00 38.66 3.06
1246 2142 1.134640 GTGGACCATGCACACCGTATA 60.135 52.381 0.00 0.00 38.66 1.47
1247 2143 1.138069 TGGACCATGCACACCGTATAG 59.862 52.381 0.00 0.00 0.00 1.31
1248 2144 1.217882 GACCATGCACACCGTATAGC 58.782 55.000 0.00 0.00 0.00 2.97
1251 2147 2.432874 ACCATGCACACCGTATAGCTAA 59.567 45.455 0.00 0.00 0.00 3.09
1252 2148 2.800544 CCATGCACACCGTATAGCTAAC 59.199 50.000 0.00 0.00 0.00 2.34
1253 2149 3.492656 CCATGCACACCGTATAGCTAACT 60.493 47.826 0.00 0.00 0.00 2.24
1255 2151 4.987408 TGCACACCGTATAGCTAACTAA 57.013 40.909 0.00 0.00 30.45 2.24
1261 2177 5.832060 ACACCGTATAGCTAACTAAGTCCAT 59.168 40.000 0.00 0.00 30.45 3.41
1267 2183 8.449397 CGTATAGCTAACTAAGTCCATAATCGT 58.551 37.037 0.00 0.00 30.45 3.73
1310 2226 6.583912 ACGACATTATCATCCAAACTAACG 57.416 37.500 0.00 0.00 0.00 3.18
1312 2228 5.006261 CGACATTATCATCCAAACTAACGCA 59.994 40.000 0.00 0.00 0.00 5.24
1332 2253 7.050281 ACGCATATGATTCTACGATTTTAGC 57.950 36.000 6.97 0.00 0.00 3.09
1397 2321 6.700352 TCTACGATTTATGATCATGCCATCA 58.300 36.000 18.72 0.00 37.20 3.07
1422 2346 3.555956 CCTTCGATCCGATTCAAAATCGT 59.444 43.478 17.76 3.70 41.24 3.73
1433 2357 6.457392 CCGATTCAAAATCGTGATTCTGACAT 60.457 38.462 17.76 0.00 39.67 3.06
1712 2646 3.499737 CACTTCGACATGGCGCCC 61.500 66.667 26.77 7.25 0.00 6.13
1737 2671 3.659089 TTCTACAAGCTCGCCGCCC 62.659 63.158 0.00 0.00 40.39 6.13
1813 2747 2.029844 GCGTCCAGTTCTGCCTCAC 61.030 63.158 0.00 0.00 0.00 3.51
1835 2769 0.749454 GGAACCCATACTGGCTGCTG 60.749 60.000 0.00 0.00 35.79 4.41
1836 2770 1.379044 AACCCATACTGGCTGCTGC 60.379 57.895 7.10 7.10 35.79 5.25
1880 2814 4.570663 GGGGACGTCGCCGAGATG 62.571 72.222 32.57 0.00 39.23 2.90
1894 2828 1.306141 AGATGGCCGTCAGGGAGAA 60.306 57.895 26.70 0.00 38.47 2.87
1933 2867 1.903877 ATGACGCAGAACTGGGGGAG 61.904 60.000 19.75 0.00 46.30 4.30
1939 2873 1.229082 AGAACTGGGGGAGCACGTA 60.229 57.895 0.00 0.00 0.00 3.57
1950 2884 2.813908 GCACGTACCAGGCCTTCG 60.814 66.667 0.00 8.75 0.00 3.79
1951 2885 2.813908 CACGTACCAGGCCTTCGC 60.814 66.667 0.00 0.00 0.00 4.70
1977 2911 3.934391 GACAAGTCCGTGGGGCTCG 62.934 68.421 0.00 0.00 0.00 5.03
1980 2914 2.943978 AAGTCCGTGGGGCTCGAAG 61.944 63.158 0.00 0.00 0.00 3.79
1984 2918 2.125912 CGTGGGGCTCGAAGTCAG 60.126 66.667 0.00 0.00 0.00 3.51
2016 2950 2.264480 CCGACGGCAAGACCATCA 59.736 61.111 0.00 0.00 39.03 3.07
2094 4236 6.173339 TCAAACAACTTCTGGTAGATCCATC 58.827 40.000 0.00 0.00 46.12 3.51
2121 4263 4.152644 CATGCATCCATGGCGACT 57.847 55.556 6.96 0.00 44.07 4.18
2132 4274 8.815912 TGCATCCATGGCGACTATATATATATT 58.184 33.333 6.96 0.00 0.00 1.28
2133 4275 9.307121 GCATCCATGGCGACTATATATATATTC 57.693 37.037 6.96 6.49 0.00 1.75
2134 4276 9.809096 CATCCATGGCGACTATATATATATTCC 57.191 37.037 6.96 5.88 0.00 3.01
2135 4277 9.775539 ATCCATGGCGACTATATATATATTCCT 57.224 33.333 6.96 0.00 0.00 3.36
2136 4278 9.025041 TCCATGGCGACTATATATATATTCCTG 57.975 37.037 6.96 1.53 0.00 3.86
2137 4279 7.761704 CCATGGCGACTATATATATATTCCTGC 59.238 40.741 10.48 9.87 0.00 4.85
2138 4280 7.833285 TGGCGACTATATATATATTCCTGCA 57.167 36.000 10.48 0.00 0.00 4.41
2142 4583 9.790389 GCGACTATATATATATTCCTGCATACC 57.210 37.037 10.48 0.00 0.00 2.73
2166 4607 3.945179 GATTGACCATCGATGCTGTTTC 58.055 45.455 20.25 9.54 0.00 2.78
2174 4615 0.235665 CGATGCTGTTTCGCAAGTGT 59.764 50.000 0.00 0.00 44.06 3.55
2186 4627 4.167554 TCGCAAGTGTTTTTGTTTCAGT 57.832 36.364 0.00 0.00 39.48 3.41
2187 4628 5.298197 TCGCAAGTGTTTTTGTTTCAGTA 57.702 34.783 0.00 0.00 39.48 2.74
2188 4629 5.700846 TCGCAAGTGTTTTTGTTTCAGTAA 58.299 33.333 0.00 0.00 39.48 2.24
2189 4630 6.326375 TCGCAAGTGTTTTTGTTTCAGTAAT 58.674 32.000 0.00 0.00 39.48 1.89
2190 4631 6.809196 TCGCAAGTGTTTTTGTTTCAGTAATT 59.191 30.769 0.00 0.00 39.48 1.40
2191 4632 7.968956 TCGCAAGTGTTTTTGTTTCAGTAATTA 59.031 29.630 0.00 0.00 39.48 1.40
2192 4633 8.751335 CGCAAGTGTTTTTGTTTCAGTAATTAT 58.249 29.630 0.00 0.00 0.00 1.28
2208 4649 9.784680 TCAGTAATTATTACTCTCTTCGTTGTC 57.215 33.333 14.03 0.00 44.32 3.18
2209 4650 9.790389 CAGTAATTATTACTCTCTTCGTTGTCT 57.210 33.333 14.03 0.00 44.32 3.41
2213 4654 9.575783 AATTATTACTCTCTTCGTTGTCTTCTC 57.424 33.333 0.00 0.00 0.00 2.87
2214 4655 6.576662 ATTACTCTCTTCGTTGTCTTCTCA 57.423 37.500 0.00 0.00 0.00 3.27
2215 4656 6.576662 TTACTCTCTTCGTTGTCTTCTCAT 57.423 37.500 0.00 0.00 0.00 2.90
2216 4657 5.054390 ACTCTCTTCGTTGTCTTCTCATC 57.946 43.478 0.00 0.00 0.00 2.92
2217 4658 4.764823 ACTCTCTTCGTTGTCTTCTCATCT 59.235 41.667 0.00 0.00 0.00 2.90
2222 4663 6.459066 TCTTCGTTGTCTTCTCATCTTCATT 58.541 36.000 0.00 0.00 0.00 2.57
2260 4701 9.791801 GAGCTATCTCCATCATGTATATCTCTA 57.208 37.037 0.00 0.00 33.19 2.43
2291 4734 7.891183 TGTACAAGTCTTAGAGCTTGATTTC 57.109 36.000 21.94 13.20 43.29 2.17
2349 7629 3.325425 TCTTCAACACGGACCCTCAAATA 59.675 43.478 0.00 0.00 0.00 1.40
2350 7630 3.328382 TCAACACGGACCCTCAAATAG 57.672 47.619 0.00 0.00 0.00 1.73
2351 7631 2.635915 TCAACACGGACCCTCAAATAGT 59.364 45.455 0.00 0.00 0.00 2.12
2352 7632 3.000727 CAACACGGACCCTCAAATAGTC 58.999 50.000 0.00 0.00 0.00 2.59
2353 7633 1.553704 ACACGGACCCTCAAATAGTCC 59.446 52.381 0.00 0.00 45.49 3.85
2359 7639 3.863041 GACCCTCAAATAGTCCACAGAC 58.137 50.000 0.00 0.00 43.89 3.51
2360 7640 3.248024 ACCCTCAAATAGTCCACAGACA 58.752 45.455 0.00 0.00 46.15 3.41
2361 7641 3.008049 ACCCTCAAATAGTCCACAGACAC 59.992 47.826 0.00 0.00 46.15 3.67
2362 7642 3.600388 CCTCAAATAGTCCACAGACACC 58.400 50.000 0.00 0.00 46.15 4.16
2363 7643 3.600388 CTCAAATAGTCCACAGACACCC 58.400 50.000 0.00 0.00 46.15 4.61
2364 7644 2.304761 TCAAATAGTCCACAGACACCCC 59.695 50.000 0.00 0.00 46.15 4.95
2365 7645 2.038863 AATAGTCCACAGACACCCCA 57.961 50.000 0.00 0.00 46.15 4.96
2366 7646 2.038863 ATAGTCCACAGACACCCCAA 57.961 50.000 0.00 0.00 46.15 4.12
2367 7647 1.348064 TAGTCCACAGACACCCCAAG 58.652 55.000 0.00 0.00 46.15 3.61
2368 7648 1.600916 GTCCACAGACACCCCAAGC 60.601 63.158 0.00 0.00 42.99 4.01
2369 7649 1.770110 TCCACAGACACCCCAAGCT 60.770 57.895 0.00 0.00 0.00 3.74
2370 7650 1.601759 CCACAGACACCCCAAGCTG 60.602 63.158 0.00 0.00 34.65 4.24
2371 7651 1.149174 CACAGACACCCCAAGCTGT 59.851 57.895 0.00 0.00 41.90 4.40
2372 7652 0.886490 CACAGACACCCCAAGCTGTC 60.886 60.000 0.00 0.00 39.40 3.51
2373 7653 1.302832 CAGACACCCCAAGCTGTCC 60.303 63.158 0.00 0.00 38.04 4.02
2377 7657 2.847234 ACCCCAAGCTGTCCGTGA 60.847 61.111 0.00 0.00 0.00 4.35
2421 7701 1.606668 CGCAAACCAGAAGCAAACCTA 59.393 47.619 0.00 0.00 0.00 3.08
2422 7702 2.604614 CGCAAACCAGAAGCAAACCTAC 60.605 50.000 0.00 0.00 0.00 3.18
2431 7711 2.061509 AGCAAACCTACCGGTGTTTT 57.938 45.000 19.93 10.66 44.73 2.43
2502 7782 0.805614 TCTACTCTCTGTCTGCACGC 59.194 55.000 0.00 0.00 0.00 5.34
2588 7869 0.523072 AGTATTTGTGGCTGCTTGCG 59.477 50.000 0.00 0.00 44.05 4.85
2607 7888 6.872020 GCTTGCGTAGAGGGTATAATCATAAA 59.128 38.462 0.00 0.00 0.00 1.40
2608 7889 7.148623 GCTTGCGTAGAGGGTATAATCATAAAC 60.149 40.741 0.00 0.00 0.00 2.01
2657 7938 5.758296 ACACATTATTATAGGTTCCACTGCG 59.242 40.000 0.00 0.00 0.00 5.18
2664 7945 1.039856 AGGTTCCACTGCGCAAAAAT 58.960 45.000 13.05 0.00 0.00 1.82
2665 7946 1.412343 AGGTTCCACTGCGCAAAAATT 59.588 42.857 13.05 0.00 0.00 1.82
2666 7947 2.625790 AGGTTCCACTGCGCAAAAATTA 59.374 40.909 13.05 0.00 0.00 1.40
2667 7948 3.258123 AGGTTCCACTGCGCAAAAATTAT 59.742 39.130 13.05 0.00 0.00 1.28
2668 7949 3.612423 GGTTCCACTGCGCAAAAATTATC 59.388 43.478 13.05 0.00 0.00 1.75
2669 7950 4.233789 GTTCCACTGCGCAAAAATTATCA 58.766 39.130 13.05 0.00 0.00 2.15
2670 7951 4.511617 TCCACTGCGCAAAAATTATCAA 57.488 36.364 13.05 0.00 0.00 2.57
2671 7952 4.876125 TCCACTGCGCAAAAATTATCAAA 58.124 34.783 13.05 0.00 0.00 2.69
2672 7953 4.922692 TCCACTGCGCAAAAATTATCAAAG 59.077 37.500 13.05 0.00 0.00 2.77
2692 7973 7.022979 TCAAAGCAATGAACGATAACTCAATG 58.977 34.615 0.00 0.00 0.00 2.82
2700 7981 6.370593 TGAACGATAACTCAATGAAACTTGC 58.629 36.000 0.00 0.00 0.00 4.01
2715 7996 2.301346 ACTTGCTGAAACTCCCTTGTG 58.699 47.619 0.00 0.00 0.00 3.33
2742 8023 4.023107 TCGAGAACGCCTTGATCCTTATAG 60.023 45.833 0.00 0.00 39.58 1.31
2745 8028 5.145564 AGAACGCCTTGATCCTTATAGGTA 58.854 41.667 0.00 0.00 36.53 3.08
2760 8043 4.783764 ATAGGTAAAACAACCAGCTTGC 57.216 40.909 0.00 0.00 42.40 4.01
2763 8046 1.410882 GTAAAACAACCAGCTTGCCCA 59.589 47.619 0.00 0.00 32.41 5.36
2791 8074 8.299570 AGCAATTAAGAATTTGTCCACTACTTG 58.700 33.333 0.00 0.00 0.00 3.16
2792 8075 7.062255 GCAATTAAGAATTTGTCCACTACTTGC 59.938 37.037 0.00 0.00 0.00 4.01
2819 8102 4.097286 ACCGTTGCACTTTTGTTACTTCAT 59.903 37.500 0.00 0.00 0.00 2.57
2880 8163 1.672881 ACACTCTTTGCAGCAGTCAAC 59.327 47.619 0.00 0.00 0.00 3.18
2927 8210 7.923878 GGATTCAGTCTACTCCTTGTTAGATTC 59.076 40.741 0.00 0.00 0.00 2.52
2928 8211 6.438259 TCAGTCTACTCCTTGTTAGATTCG 57.562 41.667 0.00 0.00 0.00 3.34
2932 8215 6.433404 AGTCTACTCCTTGTTAGATTCGACAA 59.567 38.462 7.93 7.93 34.80 3.18
2934 8217 7.432838 GTCTACTCCTTGTTAGATTCGACAATC 59.567 40.741 8.44 0.00 39.10 2.67
2935 8218 5.420409 ACTCCTTGTTAGATTCGACAATCC 58.580 41.667 8.44 0.00 39.58 3.01
2952 8235 9.374838 TCGACAATCCTACTTATTAAAAAGTCC 57.625 33.333 0.00 0.00 40.20 3.85
2990 8273 1.448893 TGGGTTATCAAGCGGCGAC 60.449 57.895 12.98 1.23 0.00 5.19
3008 8291 2.126502 GTTTGGCGGCCATTGACG 60.127 61.111 24.49 0.00 31.53 4.35
3014 8297 2.514013 GCGGCCATTGACGTCTACG 61.514 63.158 17.92 9.98 46.33 3.51
3026 8309 1.136984 GTCTACGCCCGACAGTCTG 59.863 63.158 0.00 0.00 0.00 3.51
3047 8330 1.148273 ACCGCAAGTTGCAGGAGAA 59.852 52.632 31.65 0.00 45.36 2.87
3049 8332 0.449388 CCGCAAGTTGCAGGAGAATC 59.551 55.000 26.56 0.00 45.36 2.52
3064 8347 1.134068 AGAATCGGGAGGCCTTTAAGC 60.134 52.381 6.77 0.00 0.00 3.09
3069 8352 0.462225 GGGAGGCCTTTAAGCGTCTC 60.462 60.000 6.77 6.54 44.91 3.36
3082 8365 2.951745 GTCTCGAGATGGCGCACG 60.952 66.667 19.90 6.79 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.263484 CGGATCATCAGATGCAAGTGC 59.737 52.381 5.41 0.00 42.17 4.40
24 25 2.801111 CACTCGGATCATCAGATGCAAG 59.199 50.000 5.41 1.53 42.17 4.01
25 26 2.431782 TCACTCGGATCATCAGATGCAA 59.568 45.455 5.41 0.00 42.17 4.08
26 27 2.034124 TCACTCGGATCATCAGATGCA 58.966 47.619 5.41 0.00 42.17 3.96
27 28 2.402305 GTCACTCGGATCATCAGATGC 58.598 52.381 5.41 0.00 39.03 3.91
28 29 2.659387 CGTCACTCGGATCATCAGATG 58.341 52.381 3.71 3.71 33.72 2.90
31 32 0.101219 TGCGTCACTCGGATCATCAG 59.899 55.000 0.00 0.00 40.26 2.90
37 38 0.732880 CGTTTCTGCGTCACTCGGAT 60.733 55.000 0.00 0.00 39.47 4.18
44 45 0.386476 ACAGTACCGTTTCTGCGTCA 59.614 50.000 0.00 0.00 35.37 4.35
47 48 2.407361 CAGTTACAGTACCGTTTCTGCG 59.593 50.000 0.00 0.00 35.37 5.18
50 51 3.738830 TGCAGTTACAGTACCGTTTCT 57.261 42.857 0.00 0.00 0.00 2.52
88 89 0.746923 GTACACCCCAAAGGCGATCC 60.747 60.000 0.00 0.00 40.58 3.36
98 99 0.485543 TGTCTCTGGAGTACACCCCA 59.514 55.000 6.89 4.36 0.00 4.96
110 126 4.023450 ACAGTTCATGCAACATTGTCTCTG 60.023 41.667 0.00 0.00 37.48 3.35
114 130 4.227512 TGACAGTTCATGCAACATTGTC 57.772 40.909 15.54 15.54 39.22 3.18
125 141 7.069331 TGTTTTACTTTTCCCATGACAGTTCAT 59.931 33.333 0.00 0.00 43.80 2.57
129 145 6.976934 ATGTTTTACTTTTCCCATGACAGT 57.023 33.333 0.00 0.00 0.00 3.55
139 155 7.631915 ATTACACCGCAATGTTTTACTTTTC 57.368 32.000 0.00 0.00 33.85 2.29
164 180 6.006449 CCTAAAGCAGCATGGGAAATATAGT 58.994 40.000 0.00 0.00 35.86 2.12
167 183 4.808042 ACCTAAAGCAGCATGGGAAATAT 58.192 39.130 7.50 0.00 35.86 1.28
168 184 4.079787 AGACCTAAAGCAGCATGGGAAATA 60.080 41.667 7.50 0.00 35.86 1.40
174 190 2.119801 ACAGACCTAAAGCAGCATGG 57.880 50.000 0.00 0.00 35.86 3.66
195 211 8.918658 CACAGCTTACACGAACTAAAAGTAATA 58.081 33.333 0.00 0.00 0.00 0.98
196 212 7.095355 CCACAGCTTACACGAACTAAAAGTAAT 60.095 37.037 0.00 0.00 0.00 1.89
199 215 4.510340 CCACAGCTTACACGAACTAAAAGT 59.490 41.667 0.00 0.00 0.00 2.66
203 219 3.386486 CACCACAGCTTACACGAACTAA 58.614 45.455 0.00 0.00 0.00 2.24
204 220 2.864882 GCACCACAGCTTACACGAACTA 60.865 50.000 0.00 0.00 0.00 2.24
205 221 1.865865 CACCACAGCTTACACGAACT 58.134 50.000 0.00 0.00 0.00 3.01
218 234 0.679505 GACACCTCACTAGCACCACA 59.320 55.000 0.00 0.00 0.00 4.17
236 252 6.833933 TCACTCTATCTAGCCAACATACAAGA 59.166 38.462 0.00 0.00 0.00 3.02
239 255 6.365520 TCTCACTCTATCTAGCCAACATACA 58.634 40.000 0.00 0.00 0.00 2.29
240 256 6.885952 TCTCACTCTATCTAGCCAACATAC 57.114 41.667 0.00 0.00 0.00 2.39
264 281 2.418368 ATAAGCCCAACAATGAGCGA 57.582 45.000 0.00 0.00 0.00 4.93
266 283 4.454728 TCAAATAAGCCCAACAATGAGC 57.545 40.909 0.00 0.00 0.00 4.26
272 289 4.262377 CCAACACATCAAATAAGCCCAACA 60.262 41.667 0.00 0.00 0.00 3.33
273 290 4.244862 CCAACACATCAAATAAGCCCAAC 58.755 43.478 0.00 0.00 0.00 3.77
274 291 3.306641 GCCAACACATCAAATAAGCCCAA 60.307 43.478 0.00 0.00 0.00 4.12
276 293 2.233431 TGCCAACACATCAAATAAGCCC 59.767 45.455 0.00 0.00 0.00 5.19
279 296 6.254157 GCTAACATGCCAACACATCAAATAAG 59.746 38.462 0.00 0.00 0.00 1.73
299 316 2.159627 CACGAACAAGGTCATGGCTAAC 59.840 50.000 0.00 0.00 0.00 2.34
300 317 2.422597 CACGAACAAGGTCATGGCTAA 58.577 47.619 0.00 0.00 0.00 3.09
303 320 0.605319 TCCACGAACAAGGTCATGGC 60.605 55.000 0.00 0.00 0.00 4.40
316 333 2.621338 GCTGACTCATTCATTCCACGA 58.379 47.619 0.00 0.00 32.17 4.35
317 334 1.667724 GGCTGACTCATTCATTCCACG 59.332 52.381 0.00 0.00 32.17 4.94
361 391 3.944087 AGGTGTAAAGGCTGACTCATTC 58.056 45.455 0.00 0.00 0.00 2.67
362 392 4.286032 TGTAGGTGTAAAGGCTGACTCATT 59.714 41.667 0.00 0.00 0.00 2.57
363 393 3.838317 TGTAGGTGTAAAGGCTGACTCAT 59.162 43.478 0.00 0.00 0.00 2.90
364 394 3.236047 TGTAGGTGTAAAGGCTGACTCA 58.764 45.455 0.00 0.00 0.00 3.41
365 395 3.955650 TGTAGGTGTAAAGGCTGACTC 57.044 47.619 0.00 0.00 0.00 3.36
366 396 4.699925 TTTGTAGGTGTAAAGGCTGACT 57.300 40.909 0.00 0.00 0.00 3.41
367 397 5.061179 TCTTTTGTAGGTGTAAAGGCTGAC 58.939 41.667 0.00 0.00 31.45 3.51
368 398 5.298989 TCTTTTGTAGGTGTAAAGGCTGA 57.701 39.130 0.00 0.00 31.45 4.26
369 399 6.385649 TTTCTTTTGTAGGTGTAAAGGCTG 57.614 37.500 0.00 0.00 31.45 4.85
370 400 7.340999 TCTTTTTCTTTTGTAGGTGTAAAGGCT 59.659 33.333 0.00 0.00 31.45 4.58
371 401 7.485810 TCTTTTTCTTTTGTAGGTGTAAAGGC 58.514 34.615 0.00 0.00 31.45 4.35
372 402 8.899771 TCTCTTTTTCTTTTGTAGGTGTAAAGG 58.100 33.333 0.00 0.00 31.45 3.11
376 406 9.621629 TCATTCTCTTTTTCTTTTGTAGGTGTA 57.378 29.630 0.00 0.00 0.00 2.90
377 407 8.519799 TCATTCTCTTTTTCTTTTGTAGGTGT 57.480 30.769 0.00 0.00 0.00 4.16
378 408 8.624776 ACTCATTCTCTTTTTCTTTTGTAGGTG 58.375 33.333 0.00 0.00 0.00 4.00
379 409 8.753497 ACTCATTCTCTTTTTCTTTTGTAGGT 57.247 30.769 0.00 0.00 0.00 3.08
380 410 8.840321 TGACTCATTCTCTTTTTCTTTTGTAGG 58.160 33.333 0.00 0.00 0.00 3.18
381 411 9.875675 CTGACTCATTCTCTTTTTCTTTTGTAG 57.124 33.333 0.00 0.00 0.00 2.74
382 412 8.345565 GCTGACTCATTCTCTTTTTCTTTTGTA 58.654 33.333 0.00 0.00 0.00 2.41
383 413 7.199078 GCTGACTCATTCTCTTTTTCTTTTGT 58.801 34.615 0.00 0.00 0.00 2.83
384 414 6.640092 GGCTGACTCATTCTCTTTTTCTTTTG 59.360 38.462 0.00 0.00 0.00 2.44
385 415 6.548993 AGGCTGACTCATTCTCTTTTTCTTTT 59.451 34.615 0.00 0.00 0.00 2.27
386 416 6.067350 AGGCTGACTCATTCTCTTTTTCTTT 58.933 36.000 0.00 0.00 0.00 2.52
387 417 5.629125 AGGCTGACTCATTCTCTTTTTCTT 58.371 37.500 0.00 0.00 0.00 2.52
388 418 5.240013 AGGCTGACTCATTCTCTTTTTCT 57.760 39.130 0.00 0.00 0.00 2.52
389 419 5.956068 AAGGCTGACTCATTCTCTTTTTC 57.044 39.130 0.00 0.00 0.00 2.29
390 420 5.829924 TGAAAGGCTGACTCATTCTCTTTTT 59.170 36.000 0.00 0.00 0.00 1.94
391 421 5.380043 TGAAAGGCTGACTCATTCTCTTTT 58.620 37.500 0.00 0.00 0.00 2.27
392 422 4.978099 TGAAAGGCTGACTCATTCTCTTT 58.022 39.130 0.00 0.00 0.00 2.52
393 423 4.630644 TGAAAGGCTGACTCATTCTCTT 57.369 40.909 0.00 0.00 0.00 2.85
394 424 4.840716 ATGAAAGGCTGACTCATTCTCT 57.159 40.909 0.00 0.00 0.00 3.10
395 425 5.911752 TCTATGAAAGGCTGACTCATTCTC 58.088 41.667 11.02 0.00 32.22 2.87
396 426 5.946942 TCTATGAAAGGCTGACTCATTCT 57.053 39.130 11.02 0.00 32.22 2.40
397 427 6.992063 TTTCTATGAAAGGCTGACTCATTC 57.008 37.500 11.02 0.69 32.22 2.67
398 428 7.765695 TTTTTCTATGAAAGGCTGACTCATT 57.234 32.000 11.02 0.00 32.22 2.57
422 452 7.610305 TGTAGTCTTCACCTCTTCTTTGTTTTT 59.390 33.333 0.00 0.00 0.00 1.94
423 453 7.110155 TGTAGTCTTCACCTCTTCTTTGTTTT 58.890 34.615 0.00 0.00 0.00 2.43
424 454 6.650120 TGTAGTCTTCACCTCTTCTTTGTTT 58.350 36.000 0.00 0.00 0.00 2.83
425 455 6.235231 TGTAGTCTTCACCTCTTCTTTGTT 57.765 37.500 0.00 0.00 0.00 2.83
426 456 5.871396 TGTAGTCTTCACCTCTTCTTTGT 57.129 39.130 0.00 0.00 0.00 2.83
427 457 6.049149 TGTTGTAGTCTTCACCTCTTCTTTG 58.951 40.000 0.00 0.00 0.00 2.77
428 458 6.235231 TGTTGTAGTCTTCACCTCTTCTTT 57.765 37.500 0.00 0.00 0.00 2.52
429 459 5.871396 TGTTGTAGTCTTCACCTCTTCTT 57.129 39.130 0.00 0.00 0.00 2.52
430 460 7.540474 TTATGTTGTAGTCTTCACCTCTTCT 57.460 36.000 0.00 0.00 0.00 2.85
431 461 7.819900 ACATTATGTTGTAGTCTTCACCTCTTC 59.180 37.037 0.00 0.00 0.00 2.87
432 462 7.604164 CACATTATGTTGTAGTCTTCACCTCTT 59.396 37.037 0.00 0.00 0.00 2.85
433 463 7.099764 CACATTATGTTGTAGTCTTCACCTCT 58.900 38.462 0.00 0.00 0.00 3.69
434 464 6.313905 CCACATTATGTTGTAGTCTTCACCTC 59.686 42.308 0.00 0.00 0.00 3.85
435 465 6.173339 CCACATTATGTTGTAGTCTTCACCT 58.827 40.000 0.00 0.00 0.00 4.00
436 466 5.354234 CCCACATTATGTTGTAGTCTTCACC 59.646 44.000 0.00 0.00 0.00 4.02
437 467 6.170506 TCCCACATTATGTTGTAGTCTTCAC 58.829 40.000 0.00 0.00 0.00 3.18
443 473 4.568072 TGCTCCCACATTATGTTGTAGT 57.432 40.909 0.00 0.00 0.00 2.73
492 524 8.996651 AGAAGACTTTCTATTTTCCAAAAGGA 57.003 30.769 0.00 0.00 41.82 3.36
506 538 8.298729 AGAACATTTTCCAAAGAAGACTTTCT 57.701 30.769 0.00 0.00 43.41 2.52
508 540 9.190317 ACTAGAACATTTTCCAAAGAAGACTTT 57.810 29.630 0.00 0.00 45.75 2.66
516 548 8.783093 TGATGTACACTAGAACATTTTCCAAAG 58.217 33.333 0.00 0.00 36.48 2.77
541 573 1.457346 GACCTTCTGACTTGGGCATG 58.543 55.000 0.00 0.00 0.00 4.06
545 577 2.744202 CAATTCGACCTTCTGACTTGGG 59.256 50.000 0.00 0.00 0.00 4.12
546 578 3.403038 ACAATTCGACCTTCTGACTTGG 58.597 45.455 0.00 0.00 31.33 3.61
549 581 4.703897 TGAAACAATTCGACCTTCTGACT 58.296 39.130 0.00 0.00 38.46 3.41
550 582 4.750098 TCTGAAACAATTCGACCTTCTGAC 59.250 41.667 0.00 0.00 38.46 3.51
560 601 8.076178 ACTACTTCCATTTTCTGAAACAATTCG 58.924 33.333 1.58 0.00 38.46 3.34
565 606 8.519799 AAAGACTACTTCCATTTTCTGAAACA 57.480 30.769 1.58 0.00 35.05 2.83
570 611 9.831737 CATACAAAAGACTACTTCCATTTTCTG 57.168 33.333 0.00 0.00 35.05 3.02
571 612 9.014297 CCATACAAAAGACTACTTCCATTTTCT 57.986 33.333 0.00 0.00 35.05 2.52
580 621 7.817418 TTTTCTGCCATACAAAAGACTACTT 57.183 32.000 0.00 0.00 38.05 2.24
690 731 4.639310 TGGGCTTCGGCGTTTATATAAAAA 59.361 37.500 9.48 0.10 42.91 1.94
691 732 4.197750 TGGGCTTCGGCGTTTATATAAAA 58.802 39.130 9.48 0.00 42.91 1.52
692 733 3.806380 TGGGCTTCGGCGTTTATATAAA 58.194 40.909 6.85 3.71 42.91 1.40
693 734 3.395639 CTGGGCTTCGGCGTTTATATAA 58.604 45.455 6.85 0.00 42.91 0.98
694 735 2.289195 CCTGGGCTTCGGCGTTTATATA 60.289 50.000 6.85 0.00 42.91 0.86
695 736 1.542547 CCTGGGCTTCGGCGTTTATAT 60.543 52.381 6.85 0.00 42.91 0.86
696 737 0.179067 CCTGGGCTTCGGCGTTTATA 60.179 55.000 6.85 0.00 42.91 0.98
697 738 1.451387 CCTGGGCTTCGGCGTTTAT 60.451 57.895 6.85 0.00 42.91 1.40
698 739 2.046700 CCTGGGCTTCGGCGTTTA 60.047 61.111 6.85 0.00 42.91 2.01
699 740 3.785122 AACCTGGGCTTCGGCGTTT 62.785 57.895 6.85 0.00 42.91 3.60
700 741 4.265056 AACCTGGGCTTCGGCGTT 62.265 61.111 6.85 0.00 42.91 4.84
701 742 4.699522 GAACCTGGGCTTCGGCGT 62.700 66.667 6.85 0.00 42.91 5.68
705 746 2.742372 CCACGAACCTGGGCTTCG 60.742 66.667 15.41 15.41 44.90 3.79
770 1617 1.711060 CGCACGTCTGTGGTGGTTTT 61.711 55.000 0.00 0.00 46.51 2.43
800 1661 2.161609 GGCCGACAGAATTTCGTTCATT 59.838 45.455 0.00 0.00 39.39 2.57
806 1667 3.089784 CCGGCCGACAGAATTTCG 58.910 61.111 30.73 0.44 36.20 3.46
807 1668 2.761195 GGCCGGCCGACAGAATTTC 61.761 63.158 33.60 1.60 0.00 2.17
808 1669 2.750237 GGCCGGCCGACAGAATTT 60.750 61.111 33.60 0.00 0.00 1.82
809 1670 3.976701 CTGGCCGGCCGACAGAATT 62.977 63.158 39.00 0.00 39.42 2.17
810 1671 4.473520 CTGGCCGGCCGACAGAAT 62.474 66.667 39.00 0.00 39.42 2.40
840 1701 1.448119 TTGGGCGCACGATTTGTTCA 61.448 50.000 10.83 0.00 0.00 3.18
844 1705 1.154225 GAGTTGGGCGCACGATTTG 60.154 57.895 10.83 0.00 0.00 2.32
869 1731 3.044059 GCCACGTTCATGAGCCTGC 62.044 63.158 3.76 0.79 0.00 4.85
875 1737 2.281139 TTGGCGCCACGTTCATGA 60.281 55.556 32.95 9.33 0.00 3.07
904 1770 3.702548 TGCGAGTTTATAGTAGGGCAGAA 59.297 43.478 0.00 0.00 0.00 3.02
910 1777 6.153067 CAGGAGAATGCGAGTTTATAGTAGG 58.847 44.000 0.00 0.00 0.00 3.18
913 1780 4.372656 GCAGGAGAATGCGAGTTTATAGT 58.627 43.478 0.00 0.00 36.28 2.12
945 1812 1.138036 CGTACGCCGGAGTTGATGA 59.862 57.895 18.33 0.00 0.00 2.92
976 1847 1.070786 TCGAAGGTGGGTGTTGCTC 59.929 57.895 0.00 0.00 0.00 4.26
983 1863 0.320421 CATGTTCGTCGAAGGTGGGT 60.320 55.000 8.18 0.00 0.00 4.51
985 1865 1.635663 GCCATGTTCGTCGAAGGTGG 61.636 60.000 24.22 24.22 33.28 4.61
987 1867 1.736645 CGCCATGTTCGTCGAAGGT 60.737 57.895 8.18 0.00 0.00 3.50
988 1868 1.413767 CTCGCCATGTTCGTCGAAGG 61.414 60.000 8.18 7.63 0.00 3.46
989 1869 1.413767 CCTCGCCATGTTCGTCGAAG 61.414 60.000 8.18 0.00 0.00 3.79
990 1870 1.445410 CCTCGCCATGTTCGTCGAA 60.445 57.895 2.90 2.90 0.00 3.71
991 1871 2.180769 CCTCGCCATGTTCGTCGA 59.819 61.111 0.00 0.00 0.00 4.20
992 1872 2.158959 GTCCTCGCCATGTTCGTCG 61.159 63.158 4.83 0.00 0.00 5.12
1122 2013 4.452733 GTCGGGAAGCCGGTGGAG 62.453 72.222 1.90 0.00 0.00 3.86
1229 2125 1.202533 AGCTATACGGTGTGCATGGTC 60.203 52.381 0.00 0.00 0.00 4.02
1243 2139 9.511272 TCACGATTATGGACTTAGTTAGCTATA 57.489 33.333 0.00 0.00 0.00 1.31
1244 2140 8.405418 TCACGATTATGGACTTAGTTAGCTAT 57.595 34.615 0.00 0.00 0.00 2.97
1245 2141 7.812690 TCACGATTATGGACTTAGTTAGCTA 57.187 36.000 0.00 0.00 0.00 3.32
1246 2142 6.710597 TCACGATTATGGACTTAGTTAGCT 57.289 37.500 0.00 0.00 0.00 3.32
1247 2143 7.948278 AATCACGATTATGGACTTAGTTAGC 57.052 36.000 0.00 0.00 0.00 3.09
1251 2147 8.450964 CAACAAAATCACGATTATGGACTTAGT 58.549 33.333 0.00 0.00 0.00 2.24
1252 2148 8.450964 ACAACAAAATCACGATTATGGACTTAG 58.549 33.333 0.00 0.00 0.00 2.18
1253 2149 8.330466 ACAACAAAATCACGATTATGGACTTA 57.670 30.769 0.00 0.00 0.00 2.24
1255 2151 6.817765 ACAACAAAATCACGATTATGGACT 57.182 33.333 0.00 0.00 0.00 3.85
1267 2183 7.095565 ATGTCGTACAATCGTACAACAAAATCA 60.096 33.333 1.08 0.00 45.94 2.57
1285 2201 7.553034 CGTTAGTTTGGATGATAATGTCGTAC 58.447 38.462 0.00 0.00 0.00 3.67
1292 2208 8.846943 TCATATGCGTTAGTTTGGATGATAAT 57.153 30.769 0.00 0.00 0.00 1.28
1296 2212 6.992123 AGAATCATATGCGTTAGTTTGGATGA 59.008 34.615 0.00 0.00 0.00 2.92
1297 2213 7.194607 AGAATCATATGCGTTAGTTTGGATG 57.805 36.000 0.00 0.00 0.00 3.51
1300 2216 6.419710 TCGTAGAATCATATGCGTTAGTTTGG 59.580 38.462 0.00 0.00 0.00 3.28
1310 2226 8.244494 TGAGCTAAAATCGTAGAATCATATGC 57.756 34.615 0.00 0.00 43.58 3.14
1377 2298 5.163784 GGTCTGATGGCATGATCATAAATCG 60.164 44.000 8.15 8.32 31.88 3.34
1383 2304 3.752665 GAAGGTCTGATGGCATGATCAT 58.247 45.455 3.81 1.18 31.88 2.45
1397 2321 3.887621 TTTGAATCGGATCGAAGGTCT 57.112 42.857 0.00 0.00 39.99 3.85
1422 2346 5.556006 TGCATATGAGGATGTCAGAATCA 57.444 39.130 6.97 0.00 39.07 2.57
1460 2394 4.838152 CTGCCGCTGTACCCGCAT 62.838 66.667 5.29 0.00 0.00 4.73
1712 2646 0.179134 CGAGCTTGTAGAAGGACGGG 60.179 60.000 1.31 0.00 0.00 5.28
1715 2649 0.802607 CGGCGAGCTTGTAGAAGGAC 60.803 60.000 0.00 0.00 0.00 3.85
1823 2757 1.222936 GTGGAGCAGCAGCCAGTAT 59.777 57.895 7.23 0.00 43.56 2.12
1873 2807 4.227134 CCCTGACGGCCATCTCGG 62.227 72.222 2.24 1.70 38.11 4.63
1875 2809 1.330655 TTCTCCCTGACGGCCATCTC 61.331 60.000 2.24 0.00 0.00 2.75
1880 2814 3.787001 CCCTTCTCCCTGACGGCC 61.787 72.222 0.00 0.00 33.19 6.13
1902 2836 1.448540 GCGTCATCTGGACCCACTG 60.449 63.158 0.00 0.00 43.95 3.66
1903 2837 1.892819 CTGCGTCATCTGGACCCACT 61.893 60.000 0.00 0.00 43.95 4.00
1908 2842 1.354040 CAGTTCTGCGTCATCTGGAC 58.646 55.000 0.00 0.00 43.36 4.02
1933 2867 2.813908 CGAAGGCCTGGTACGTGC 60.814 66.667 5.69 0.00 0.00 5.34
1954 2888 2.805353 CCACGGACTTGTCGAGCG 60.805 66.667 0.00 0.00 0.00 5.03
1958 2892 3.934391 GAGCCCCACGGACTTGTCG 62.934 68.421 0.00 0.00 0.00 4.35
1963 2897 3.382832 CTTCGAGCCCCACGGACT 61.383 66.667 0.00 0.00 0.00 3.85
1968 2902 1.617947 ATCCTGACTTCGAGCCCCAC 61.618 60.000 0.00 0.00 0.00 4.61
1969 2903 1.306141 ATCCTGACTTCGAGCCCCA 60.306 57.895 0.00 0.00 0.00 4.96
1977 2911 1.519455 CGCCGGTGATCCTGACTTC 60.519 63.158 10.20 0.00 0.00 3.01
2049 2983 2.427245 CCTGGTAGCAGAGTCCGGG 61.427 68.421 23.31 1.41 40.74 5.73
2054 2988 2.237392 GTTTGATCCCTGGTAGCAGAGT 59.763 50.000 23.31 8.31 0.00 3.24
2094 4236 2.987547 GATGCATGGCCGGATGGG 60.988 66.667 5.05 0.00 39.58 4.00
2132 4274 1.412710 GGTCAATCGAGGTATGCAGGA 59.587 52.381 0.00 0.00 0.00 3.86
2133 4275 1.138859 TGGTCAATCGAGGTATGCAGG 59.861 52.381 0.00 0.00 0.00 4.85
2134 4276 2.602257 TGGTCAATCGAGGTATGCAG 57.398 50.000 0.00 0.00 0.00 4.41
2135 4277 3.111853 GATGGTCAATCGAGGTATGCA 57.888 47.619 0.00 0.00 0.00 3.96
2166 4607 6.567769 ATTACTGAAACAAAAACACTTGCG 57.432 33.333 0.00 0.00 0.00 4.85
2187 4628 9.575783 GAGAAGACAACGAAGAGAGTAATAATT 57.424 33.333 0.00 0.00 0.00 1.40
2188 4629 8.740906 TGAGAAGACAACGAAGAGAGTAATAAT 58.259 33.333 0.00 0.00 0.00 1.28
2189 4630 8.107399 TGAGAAGACAACGAAGAGAGTAATAA 57.893 34.615 0.00 0.00 0.00 1.40
2190 4631 7.683437 TGAGAAGACAACGAAGAGAGTAATA 57.317 36.000 0.00 0.00 0.00 0.98
2191 4632 6.576662 TGAGAAGACAACGAAGAGAGTAAT 57.423 37.500 0.00 0.00 0.00 1.89
2192 4633 6.431543 AGATGAGAAGACAACGAAGAGAGTAA 59.568 38.462 0.00 0.00 0.00 2.24
2193 4634 5.941058 AGATGAGAAGACAACGAAGAGAGTA 59.059 40.000 0.00 0.00 0.00 2.59
2194 4635 4.764823 AGATGAGAAGACAACGAAGAGAGT 59.235 41.667 0.00 0.00 0.00 3.24
2195 4636 5.309323 AGATGAGAAGACAACGAAGAGAG 57.691 43.478 0.00 0.00 0.00 3.20
2196 4637 5.241728 TGAAGATGAGAAGACAACGAAGAGA 59.758 40.000 0.00 0.00 0.00 3.10
2197 4638 5.465051 TGAAGATGAGAAGACAACGAAGAG 58.535 41.667 0.00 0.00 0.00 2.85
2198 4639 5.453567 TGAAGATGAGAAGACAACGAAGA 57.546 39.130 0.00 0.00 0.00 2.87
2199 4640 6.718454 AATGAAGATGAGAAGACAACGAAG 57.282 37.500 0.00 0.00 0.00 3.79
2200 4641 7.496529 AAAATGAAGATGAGAAGACAACGAA 57.503 32.000 0.00 0.00 0.00 3.85
2201 4642 7.012327 ACAAAAATGAAGATGAGAAGACAACGA 59.988 33.333 0.00 0.00 0.00 3.85
2202 4643 7.134815 ACAAAAATGAAGATGAGAAGACAACG 58.865 34.615 0.00 0.00 0.00 4.10
2203 4644 7.592903 GGACAAAAATGAAGATGAGAAGACAAC 59.407 37.037 0.00 0.00 0.00 3.32
2204 4645 7.285172 TGGACAAAAATGAAGATGAGAAGACAA 59.715 33.333 0.00 0.00 0.00 3.18
2205 4646 6.772233 TGGACAAAAATGAAGATGAGAAGACA 59.228 34.615 0.00 0.00 0.00 3.41
2206 4647 7.040823 AGTGGACAAAAATGAAGATGAGAAGAC 60.041 37.037 0.00 0.00 0.00 3.01
2207 4648 7.000472 AGTGGACAAAAATGAAGATGAGAAGA 59.000 34.615 0.00 0.00 0.00 2.87
2208 4649 7.082602 CAGTGGACAAAAATGAAGATGAGAAG 58.917 38.462 0.00 0.00 0.00 2.85
2209 4650 6.016024 CCAGTGGACAAAAATGAAGATGAGAA 60.016 38.462 1.68 0.00 0.00 2.87
2210 4651 5.474532 CCAGTGGACAAAAATGAAGATGAGA 59.525 40.000 1.68 0.00 0.00 3.27
2211 4652 5.474532 TCCAGTGGACAAAAATGAAGATGAG 59.525 40.000 8.12 0.00 0.00 2.90
2212 4653 5.384336 TCCAGTGGACAAAAATGAAGATGA 58.616 37.500 8.12 0.00 0.00 2.92
2213 4654 5.706916 CTCCAGTGGACAAAAATGAAGATG 58.293 41.667 8.12 0.00 0.00 2.90
2214 4655 4.219288 GCTCCAGTGGACAAAAATGAAGAT 59.781 41.667 8.12 0.00 0.00 2.40
2215 4656 3.569701 GCTCCAGTGGACAAAAATGAAGA 59.430 43.478 8.12 0.00 0.00 2.87
2216 4657 3.571401 AGCTCCAGTGGACAAAAATGAAG 59.429 43.478 8.12 0.00 0.00 3.02
2217 4658 3.565307 AGCTCCAGTGGACAAAAATGAA 58.435 40.909 8.12 0.00 0.00 2.57
2222 4663 4.207891 GAGATAGCTCCAGTGGACAAAA 57.792 45.455 8.12 0.00 35.01 2.44
2258 4699 8.254508 AGCTCTAAGACTTGTACAAGGAATTAG 58.745 37.037 33.11 30.55 42.53 1.73
2260 4701 7.010339 AGCTCTAAGACTTGTACAAGGAATT 57.990 36.000 33.11 25.53 42.53 2.17
2261 4702 6.613153 AGCTCTAAGACTTGTACAAGGAAT 57.387 37.500 33.11 21.99 42.53 3.01
2262 4703 6.041637 TCAAGCTCTAAGACTTGTACAAGGAA 59.958 38.462 33.11 17.35 43.05 3.36
2263 4704 5.538813 TCAAGCTCTAAGACTTGTACAAGGA 59.461 40.000 33.11 21.13 43.05 3.36
2264 4705 5.784177 TCAAGCTCTAAGACTTGTACAAGG 58.216 41.667 33.11 18.49 43.05 3.61
2265 4706 7.897575 AATCAAGCTCTAAGACTTGTACAAG 57.102 36.000 29.76 29.76 43.05 3.16
2349 7629 2.056906 GCTTGGGGTGTCTGTGGACT 62.057 60.000 0.00 0.00 42.54 3.85
2350 7630 1.600916 GCTTGGGGTGTCTGTGGAC 60.601 63.158 0.00 0.00 42.42 4.02
2351 7631 1.770110 AGCTTGGGGTGTCTGTGGA 60.770 57.895 0.00 0.00 0.00 4.02
2352 7632 1.601759 CAGCTTGGGGTGTCTGTGG 60.602 63.158 0.00 0.00 36.34 4.17
2353 7633 4.069869 CAGCTTGGGGTGTCTGTG 57.930 61.111 0.00 0.00 36.34 3.66
2359 7639 2.669569 CACGGACAGCTTGGGGTG 60.670 66.667 0.00 0.00 45.40 4.61
2360 7640 2.448582 TTCACGGACAGCTTGGGGT 61.449 57.895 0.00 0.00 0.00 4.95
2361 7641 1.966451 GTTCACGGACAGCTTGGGG 60.966 63.158 0.00 0.00 0.00 4.96
2362 7642 2.317609 CGTTCACGGACAGCTTGGG 61.318 63.158 0.00 0.00 35.37 4.12
2363 7643 2.954753 GCGTTCACGGACAGCTTGG 61.955 63.158 0.81 0.00 40.23 3.61
2364 7644 1.568612 ATGCGTTCACGGACAGCTTG 61.569 55.000 0.81 0.00 43.72 4.01
2365 7645 1.291877 GATGCGTTCACGGACAGCTT 61.292 55.000 0.81 0.00 43.72 3.74
2366 7646 1.738099 GATGCGTTCACGGACAGCT 60.738 57.895 0.81 0.00 43.72 4.24
2367 7647 2.740714 GGATGCGTTCACGGACAGC 61.741 63.158 0.81 0.00 43.72 4.40
2368 7648 2.444624 CGGATGCGTTCACGGACAG 61.445 63.158 0.00 0.00 43.72 3.51
2369 7649 2.431771 CGGATGCGTTCACGGACA 60.432 61.111 0.00 0.00 43.72 4.02
2370 7650 3.849953 GCGGATGCGTTCACGGAC 61.850 66.667 8.84 0.00 43.72 4.79
2421 7701 0.532640 GACACCCGTAAAACACCGGT 60.533 55.000 0.00 0.00 42.67 5.28
2422 7702 0.249996 AGACACCCGTAAAACACCGG 60.250 55.000 0.00 0.00 43.82 5.28
2437 7717 4.432980 TCGTCCTATGGATGTCTAGACA 57.567 45.455 27.07 27.07 46.44 3.41
2451 7731 2.092538 TGGTGGTTTTTGGTTCGTCCTA 60.093 45.455 1.80 0.00 37.07 2.94
2502 7782 2.325583 TTGTAAATAGGAGCAGCCGG 57.674 50.000 0.00 0.00 43.43 6.13
2559 7839 1.553248 CCACAAATACTCCTCCGGTCA 59.447 52.381 0.00 0.00 0.00 4.02
2562 7842 0.541863 AGCCACAAATACTCCTCCGG 59.458 55.000 0.00 0.00 0.00 5.14
2580 7861 3.728076 TTATACCCTCTACGCAAGCAG 57.272 47.619 0.00 0.00 45.62 4.24
2628 7909 8.956426 AGTGGAACCTATAATAATGTGTTGTTG 58.044 33.333 0.00 0.00 37.80 3.33
2657 7938 7.508965 TCGTTCATTGCTTTGATAATTTTTGC 58.491 30.769 0.00 0.00 0.00 3.68
2664 7945 8.262715 TGAGTTATCGTTCATTGCTTTGATAA 57.737 30.769 0.00 0.00 0.00 1.75
2665 7946 7.841915 TGAGTTATCGTTCATTGCTTTGATA 57.158 32.000 0.00 0.00 0.00 2.15
2666 7947 6.741992 TGAGTTATCGTTCATTGCTTTGAT 57.258 33.333 0.00 0.00 0.00 2.57
2667 7948 6.552859 TTGAGTTATCGTTCATTGCTTTGA 57.447 33.333 0.00 0.00 0.00 2.69
2668 7949 7.022979 TCATTGAGTTATCGTTCATTGCTTTG 58.977 34.615 0.00 0.00 0.00 2.77
2669 7950 7.144722 TCATTGAGTTATCGTTCATTGCTTT 57.855 32.000 0.00 0.00 0.00 3.51
2670 7951 6.741992 TCATTGAGTTATCGTTCATTGCTT 57.258 33.333 0.00 0.00 0.00 3.91
2671 7952 6.741992 TTCATTGAGTTATCGTTCATTGCT 57.258 33.333 0.00 0.00 0.00 3.91
2672 7953 7.023575 AGTTTCATTGAGTTATCGTTCATTGC 58.976 34.615 0.00 0.00 0.00 3.56
2692 7973 3.381590 ACAAGGGAGTTTCAGCAAGTTTC 59.618 43.478 0.00 0.00 0.00 2.78
2700 7981 2.772287 GAGGACACAAGGGAGTTTCAG 58.228 52.381 0.00 0.00 0.00 3.02
2715 7996 0.173708 ATCAAGGCGTTCTCGAGGAC 59.826 55.000 14.31 14.31 39.71 3.85
2742 8023 1.270094 GGGCAAGCTGGTTGTTTTACC 60.270 52.381 19.46 11.88 38.55 2.85
2745 8028 1.130777 ATGGGCAAGCTGGTTGTTTT 58.869 45.000 19.46 1.88 38.55 2.43
2760 8043 6.980397 GTGGACAAATTCTTAATTGCTATGGG 59.020 38.462 0.00 0.00 0.00 4.00
2763 8046 9.686683 AGTAGTGGACAAATTCTTAATTGCTAT 57.313 29.630 0.00 0.00 0.00 2.97
2908 8191 6.192234 TGTCGAATCTAACAAGGAGTAGAC 57.808 41.667 0.00 0.00 35.29 2.59
2914 8197 5.677319 AGGATTGTCGAATCTAACAAGGA 57.323 39.130 0.00 0.00 38.66 3.36
2927 8210 9.158233 TGGACTTTTTAATAAGTAGGATTGTCG 57.842 33.333 10.76 0.00 38.43 4.35
2952 8235 3.554324 CCACGTGTAGGGAATTTATCGTG 59.446 47.826 15.65 0.00 44.11 4.35
2990 8273 2.126502 GTCAATGGCCGCCAAACG 60.127 61.111 18.00 7.97 36.95 3.60
2993 8276 2.173758 TAGACGTCAATGGCCGCCAA 62.174 55.000 18.00 0.00 36.95 4.52
2994 8277 2.651105 TAGACGTCAATGGCCGCCA 61.651 57.895 16.17 16.17 38.19 5.69
3008 8291 1.136984 CAGACTGTCGGGCGTAGAC 59.863 63.158 1.52 0.39 38.98 2.59
3047 8330 1.146263 CGCTTAAAGGCCTCCCGAT 59.854 57.895 5.23 0.00 35.76 4.18
3049 8332 1.814169 GACGCTTAAAGGCCTCCCG 60.814 63.158 5.23 7.34 35.76 5.14
3064 8347 2.951745 GTGCGCCATCTCGAGACG 60.952 66.667 19.30 17.89 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.