Multiple sequence alignment - TraesCS7A01G021300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G021300 chr7A 100.000 2969 0 0 1 2969 8687673 8690641 0.000000e+00 5483.0
1 TraesCS7A01G021300 chr7A 86.117 1030 71 30 951 1972 8884602 8885567 0.000000e+00 1044.0
2 TraesCS7A01G021300 chr7A 85.375 1012 75 24 966 1972 8823054 8823997 0.000000e+00 981.0
3 TraesCS7A01G021300 chr7A 86.869 99 11 2 2202 2300 56217577 56217481 3.130000e-20 110.0
4 TraesCS7A01G021300 chr7D 87.666 1654 121 28 29 1658 8249405 8250999 0.000000e+00 1847.0
5 TraesCS7A01G021300 chr7D 88.770 1024 49 14 1718 2699 8251025 8252024 0.000000e+00 1194.0
6 TraesCS7A01G021300 chr7D 85.478 1026 75 32 952 1972 8375890 8376846 0.000000e+00 1002.0
7 TraesCS7A01G021300 chr7D 84.064 753 78 17 1224 1971 8436055 8436770 0.000000e+00 688.0
8 TraesCS7A01G021300 chr7D 85.160 438 63 2 11 448 544855827 544855392 5.840000e-122 448.0
9 TraesCS7A01G021300 chr7D 81.992 522 83 3 5 517 628536167 628536686 1.630000e-117 433.0
10 TraesCS7A01G021300 chr7D 84.390 410 60 4 2 411 617207059 617207464 1.660000e-107 399.0
11 TraesCS7A01G021300 chr7D 87.209 258 18 11 1846 2100 8035048 8034803 2.250000e-71 279.0
12 TraesCS7A01G021300 chr4A 88.582 1340 65 41 681 2003 731490892 731489624 0.000000e+00 1546.0
13 TraesCS7A01G021300 chr4A 84.615 1014 87 22 962 1971 731388799 731387851 0.000000e+00 944.0
14 TraesCS7A01G021300 chr4A 84.369 998 82 30 980 1972 731385374 731384446 0.000000e+00 911.0
15 TraesCS7A01G021300 chr4A 80.916 393 67 7 69 457 628877422 628877810 1.340000e-78 303.0
16 TraesCS7A01G021300 chr4A 92.308 195 14 1 1810 2003 731488361 731488167 2.920000e-70 276.0
17 TraesCS7A01G021300 chr4A 80.798 401 33 24 851 1245 732299844 732299482 1.050000e-69 274.0
18 TraesCS7A01G021300 chr4A 83.761 117 9 2 467 583 731491028 731490922 5.240000e-18 102.0
19 TraesCS7A01G021300 chr5B 85.057 609 73 16 1047 1649 707173655 707174251 3.270000e-169 604.0
20 TraesCS7A01G021300 chr2B 97.890 237 5 0 2733 2969 737450370 737450606 7.660000e-111 411.0
21 TraesCS7A01G021300 chr1D 83.645 428 64 5 46 472 38368928 38368506 5.960000e-107 398.0
22 TraesCS7A01G021300 chr1D 81.481 405 72 3 44 446 475882189 475882592 2.210000e-86 329.0
23 TraesCS7A01G021300 chr1D 100.000 28 0 0 2694 2721 452335978 452335951 5.000000e-03 52.8
24 TraesCS7A01G021300 chr1D 100.000 28 0 0 2694 2721 452352119 452352146 5.000000e-03 52.8
25 TraesCS7A01G021300 chr6B 80.172 464 87 5 2 465 600428132 600428590 2.830000e-90 342.0
26 TraesCS7A01G021300 chr2D 84.751 341 46 5 2 340 286668351 286668687 1.320000e-88 337.0
27 TraesCS7A01G021300 chr2D 82.731 249 39 4 267 515 194068200 194067956 4.980000e-53 219.0
28 TraesCS7A01G021300 chr2D 79.661 236 27 9 2733 2967 424126769 424126554 1.840000e-32 150.0
29 TraesCS7A01G021300 chr2A 84.273 337 49 3 7 343 329695179 329694847 2.850000e-85 326.0
30 TraesCS7A01G021300 chr2A 81.633 245 36 4 205 448 389631490 389631254 8.400000e-46 195.0
31 TraesCS7A01G021300 chr2A 100.000 28 0 0 2694 2721 180210560 180210587 5.000000e-03 52.8
32 TraesCS7A01G021300 chr6D 80.597 402 72 5 2 401 265997456 265997853 3.720000e-79 305.0
33 TraesCS7A01G021300 chr3D 96.875 32 1 0 2690 2721 53832307 53832338 1.000000e-03 54.7
34 TraesCS7A01G021300 chr1B 96.875 32 1 0 2690 2721 321699953 321699984 1.000000e-03 54.7
35 TraesCS7A01G021300 chr1A 96.774 31 1 0 2690 2720 452720140 452720170 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G021300 chr7A 8687673 8690641 2968 False 5483.000000 5483 100.000 1 2969 1 chr7A.!!$F1 2968
1 TraesCS7A01G021300 chr7A 8884602 8885567 965 False 1044.000000 1044 86.117 951 1972 1 chr7A.!!$F3 1021
2 TraesCS7A01G021300 chr7A 8823054 8823997 943 False 981.000000 981 85.375 966 1972 1 chr7A.!!$F2 1006
3 TraesCS7A01G021300 chr7D 8249405 8252024 2619 False 1520.500000 1847 88.218 29 2699 2 chr7D.!!$F5 2670
4 TraesCS7A01G021300 chr7D 8375890 8376846 956 False 1002.000000 1002 85.478 952 1972 1 chr7D.!!$F1 1020
5 TraesCS7A01G021300 chr7D 8436055 8436770 715 False 688.000000 688 84.064 1224 1971 1 chr7D.!!$F2 747
6 TraesCS7A01G021300 chr7D 628536167 628536686 519 False 433.000000 433 81.992 5 517 1 chr7D.!!$F4 512
7 TraesCS7A01G021300 chr4A 731384446 731388799 4353 True 927.500000 944 84.492 962 1972 2 chr4A.!!$R2 1010
8 TraesCS7A01G021300 chr4A 731488167 731491028 2861 True 641.333333 1546 88.217 467 2003 3 chr4A.!!$R3 1536
9 TraesCS7A01G021300 chr5B 707173655 707174251 596 False 604.000000 604 85.057 1047 1649 1 chr5B.!!$F1 602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 90 0.107214 CCCCGTATGGTGCATCAGTT 60.107 55.0 5.59 0.0 0.0 3.16 F
461 462 0.172803 GTCAGTATCCGTGGAAGCGT 59.827 55.0 0.00 0.0 0.0 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1846 5501 0.038892 TCCACGTACTTGAGGTTCGC 60.039 55.000 0.0 0.0 41.34 4.70 R
2376 7512 1.806542 TGCGAGAAAACATGAGGCTTC 59.193 47.619 0.0 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 1.741770 GCGAGGCGGAGTCACATTT 60.742 57.895 0.00 0.00 0.00 2.32
65 66 1.673033 CGAGGCGGAGTCACATTTTCT 60.673 52.381 0.00 0.00 0.00 2.52
66 67 1.734465 GAGGCGGAGTCACATTTTCTG 59.266 52.381 0.00 0.00 0.00 3.02
70 71 0.169009 GGAGTCACATTTTCTGGCGC 59.831 55.000 0.00 0.00 0.00 6.53
85 86 2.972505 CGCCCCGTATGGTGCATC 60.973 66.667 9.24 0.00 32.38 3.91
89 90 0.107214 CCCCGTATGGTGCATCAGTT 60.107 55.000 5.59 0.00 0.00 3.16
93 94 1.299541 GTATGGTGCATCAGTTCGGG 58.700 55.000 5.59 0.00 0.00 5.14
144 145 0.451783 GCACGTCCCATGACAAATCC 59.548 55.000 0.00 0.00 41.85 3.01
147 148 2.355756 CACGTCCCATGACAAATCCATC 59.644 50.000 0.00 0.00 41.85 3.51
152 153 3.117926 TCCCATGACAAATCCATCATCGT 60.118 43.478 0.00 0.00 33.18 3.73
217 218 3.389329 GGAAGAATAGAGCATGGGAGACA 59.611 47.826 0.00 0.00 0.00 3.41
221 222 1.395045 TAGAGCATGGGAGACAGCGG 61.395 60.000 0.00 0.00 0.00 5.52
271 272 4.079385 TGTCTCATGCCCTACTCTACCTTA 60.079 45.833 0.00 0.00 0.00 2.69
292 293 1.375523 GGCGACCGGATCAACACTT 60.376 57.895 9.46 0.00 0.00 3.16
293 294 0.953960 GGCGACCGGATCAACACTTT 60.954 55.000 9.46 0.00 0.00 2.66
302 303 1.244019 ATCAACACTTTGGGGAGCGC 61.244 55.000 0.00 0.00 33.06 5.92
343 344 4.443266 GGCAGAACCGAGCGAGCT 62.443 66.667 0.00 0.00 0.00 4.09
345 346 2.881389 CAGAACCGAGCGAGCTCT 59.119 61.111 20.97 4.41 40.69 4.09
350 351 2.100879 AACCGAGCGAGCTCTGGTTT 62.101 55.000 29.89 20.97 46.73 3.27
356 357 3.462021 GAGCGAGCTCTGGTTTGATTAT 58.538 45.455 17.03 0.00 39.80 1.28
364 365 5.769662 AGCTCTGGTTTGATTATGTTTCACA 59.230 36.000 0.00 0.00 0.00 3.58
389 390 9.946418 CATTGCATGTAATAATATGAATTTGCG 57.054 29.630 8.81 0.00 28.33 4.85
390 391 8.518151 TTGCATGTAATAATATGAATTTGCGG 57.482 30.769 0.00 0.00 28.33 5.69
391 392 7.656412 TGCATGTAATAATATGAATTTGCGGT 58.344 30.769 0.00 0.00 28.33 5.68
392 393 8.140628 TGCATGTAATAATATGAATTTGCGGTT 58.859 29.630 0.00 0.00 28.33 4.44
393 394 8.977505 GCATGTAATAATATGAATTTGCGGTTT 58.022 29.630 0.00 0.00 0.00 3.27
414 415 6.654582 GGTTTCTAATTTAAGGTGTCCGGTTA 59.345 38.462 0.00 0.00 0.00 2.85
441 442 8.786826 AGAATCAAATATTTAAGACGTGACCA 57.213 30.769 0.00 0.00 0.00 4.02
452 453 0.809385 ACGTGACCAGTCAGTATCCG 59.191 55.000 0.00 3.63 40.75 4.18
453 454 0.809385 CGTGACCAGTCAGTATCCGT 59.191 55.000 0.00 0.00 40.75 4.69
456 457 1.272258 TGACCAGTCAGTATCCGTGGA 60.272 52.381 0.00 0.00 34.14 4.02
457 458 1.822990 GACCAGTCAGTATCCGTGGAA 59.177 52.381 0.00 0.00 32.26 3.53
458 459 1.825474 ACCAGTCAGTATCCGTGGAAG 59.175 52.381 0.00 0.00 32.26 3.46
459 460 1.471676 CCAGTCAGTATCCGTGGAAGC 60.472 57.143 0.00 0.00 0.00 3.86
460 461 0.456221 AGTCAGTATCCGTGGAAGCG 59.544 55.000 0.00 0.00 0.00 4.68
461 462 0.172803 GTCAGTATCCGTGGAAGCGT 59.827 55.000 0.00 0.00 0.00 5.07
462 463 0.454600 TCAGTATCCGTGGAAGCGTC 59.545 55.000 0.00 0.00 0.00 5.19
463 464 0.527817 CAGTATCCGTGGAAGCGTCC 60.528 60.000 12.27 12.27 45.21 4.79
497 498 1.754234 GCCGGATTTGCCCATCACT 60.754 57.895 5.05 0.00 0.00 3.41
514 515 6.480320 CCCATCACTACTGTAAATGCTCTTAC 59.520 42.308 2.59 2.59 33.22 2.34
516 517 7.766278 CCATCACTACTGTAAATGCTCTTACTT 59.234 37.037 9.11 1.52 33.67 2.24
517 518 8.812329 CATCACTACTGTAAATGCTCTTACTTC 58.188 37.037 9.11 0.00 33.67 3.01
518 519 8.123639 TCACTACTGTAAATGCTCTTACTTCT 57.876 34.615 9.11 0.00 33.67 2.85
519 520 8.585881 TCACTACTGTAAATGCTCTTACTTCTT 58.414 33.333 9.11 0.00 33.67 2.52
520 521 9.856488 CACTACTGTAAATGCTCTTACTTCTTA 57.144 33.333 9.11 0.00 33.67 2.10
521 522 9.857957 ACTACTGTAAATGCTCTTACTTCTTAC 57.142 33.333 9.11 0.00 33.67 2.34
524 525 9.780186 ACTGTAAATGCTCTTACTTCTTACTTT 57.220 29.630 9.11 0.00 33.67 2.66
526 527 9.555727 TGTAAATGCTCTTACTTCTTACTTTGT 57.444 29.630 9.11 0.00 33.67 2.83
541 542 9.569122 TTCTTACTTTGTAGTAAAAAGCATCCT 57.431 29.630 12.04 0.00 44.14 3.24
576 577 9.159254 AGATTATATTCTACTGATTCACCCACA 57.841 33.333 0.00 0.00 0.00 4.17
577 578 9.429359 GATTATATTCTACTGATTCACCCACAG 57.571 37.037 0.00 0.00 37.62 3.66
578 579 3.981071 TTCTACTGATTCACCCACAGG 57.019 47.619 0.00 0.00 36.17 4.00
606 607 2.355010 ACTCTTTGCTTGTCTGGCTT 57.645 45.000 0.00 0.00 0.00 4.35
609 610 3.067320 ACTCTTTGCTTGTCTGGCTTTTC 59.933 43.478 0.00 0.00 0.00 2.29
661 662 5.046807 GCCAGTACTAGTCTTTTTAGGTCCA 60.047 44.000 0.00 0.00 0.00 4.02
664 665 7.935210 CCAGTACTAGTCTTTTTAGGTCCAAAA 59.065 37.037 0.00 0.00 0.00 2.44
789 792 4.648626 ACACATGCCACTGCCGCT 62.649 61.111 0.00 0.00 36.33 5.52
790 793 4.111016 CACATGCCACTGCCGCTG 62.111 66.667 0.00 0.00 36.33 5.18
844 847 1.004560 AGGACAGCATCACACACCG 60.005 57.895 0.00 0.00 0.00 4.94
900 906 7.277981 CCTTGCCGTACCATTTCTATATCATAC 59.722 40.741 0.00 0.00 0.00 2.39
932 938 4.506076 TGGATCCAGGCATCCAGT 57.494 55.556 11.44 0.00 46.34 4.00
933 939 3.652886 TGGATCCAGGCATCCAGTA 57.347 52.632 11.44 0.00 46.34 2.74
934 940 1.131638 TGGATCCAGGCATCCAGTAC 58.868 55.000 11.44 0.00 46.34 2.73
935 941 1.344393 TGGATCCAGGCATCCAGTACT 60.344 52.381 11.44 0.00 46.34 2.73
936 942 1.071385 GGATCCAGGCATCCAGTACTG 59.929 57.143 16.34 16.34 42.02 2.74
937 943 0.471617 ATCCAGGCATCCAGTACTGC 59.528 55.000 17.86 6.82 37.66 4.40
955 971 2.670934 CAGGCACCCAGTGAGCAC 60.671 66.667 0.00 0.00 35.23 4.40
986 1016 3.901797 GAGCCACCGTCACCTTGGG 62.902 68.421 0.00 0.00 0.00 4.12
1033 4479 2.218239 GCGACGATGCTCTCACGAC 61.218 63.158 0.00 0.00 0.00 4.34
1040 4486 4.104417 GCTCTCACGACCGCGAGT 62.104 66.667 8.23 3.14 41.64 4.18
1042 4488 2.967473 CTCTCACGACCGCGAGTGT 61.967 63.158 21.84 7.59 41.64 3.55
1044 4490 2.354188 TCACGACCGCGAGTGTTG 60.354 61.111 21.84 12.68 41.64 3.33
1063 4509 2.360350 CCATTCTGCTGGCCGTGT 60.360 61.111 0.00 0.00 0.00 4.49
1065 4511 1.503542 CATTCTGCTGGCCGTGTTC 59.496 57.895 0.00 0.00 0.00 3.18
1506 5009 2.040779 GGGACGGGGAGGAGGATT 60.041 66.667 0.00 0.00 0.00 3.01
1593 5096 1.926511 GCAGGATGGAGGCGTTTGTG 61.927 60.000 0.00 0.00 35.86 3.33
1699 5208 1.381851 GGATGATGGATCCCCTGCC 59.618 63.158 9.90 0.44 44.79 4.85
1717 5318 1.416401 GCCCCGACTCCATTAATCTCA 59.584 52.381 0.00 0.00 0.00 3.27
1721 5322 4.372656 CCCGACTCCATTAATCTCAACTC 58.627 47.826 0.00 0.00 0.00 3.01
1735 5352 2.951726 TCAACTCTGAGAGTGAATGCG 58.048 47.619 16.95 1.41 42.59 4.73
1736 5353 2.297315 TCAACTCTGAGAGTGAATGCGT 59.703 45.455 16.95 0.00 42.59 5.24
1747 5371 3.548770 AGTGAATGCGTCATCCATGATT 58.451 40.909 0.00 0.00 38.90 2.57
2060 7196 4.002982 CGGAAGAGTTGATTTGGTGATGA 58.997 43.478 0.00 0.00 0.00 2.92
2061 7197 4.637534 CGGAAGAGTTGATTTGGTGATGAT 59.362 41.667 0.00 0.00 0.00 2.45
2062 7198 5.124457 CGGAAGAGTTGATTTGGTGATGATT 59.876 40.000 0.00 0.00 0.00 2.57
2063 7199 6.316140 CGGAAGAGTTGATTTGGTGATGATTA 59.684 38.462 0.00 0.00 0.00 1.75
2102 7238 6.289834 AGAGATGAATAGATCTGCTTTGGTG 58.710 40.000 5.18 0.00 32.57 4.17
2103 7239 6.099413 AGAGATGAATAGATCTGCTTTGGTGA 59.901 38.462 5.18 0.00 32.57 4.02
2104 7240 6.054295 AGATGAATAGATCTGCTTTGGTGAC 58.946 40.000 5.18 0.00 31.14 3.67
2105 7241 4.183865 TGAATAGATCTGCTTTGGTGACG 58.816 43.478 5.18 0.00 0.00 4.35
2106 7242 4.081697 TGAATAGATCTGCTTTGGTGACGA 60.082 41.667 5.18 0.00 0.00 4.20
2107 7243 2.376808 AGATCTGCTTTGGTGACGAG 57.623 50.000 0.00 0.00 0.00 4.18
2108 7244 1.066573 AGATCTGCTTTGGTGACGAGG 60.067 52.381 0.00 0.00 0.00 4.63
2109 7245 0.976641 ATCTGCTTTGGTGACGAGGA 59.023 50.000 0.00 0.00 0.00 3.71
2110 7246 0.318441 TCTGCTTTGGTGACGAGGAG 59.682 55.000 0.00 0.00 36.39 3.69
2111 7247 0.034059 CTGCTTTGGTGACGAGGAGT 59.966 55.000 0.00 0.00 32.42 3.85
2138 7274 2.234661 TCCAACGAGCTCAGATCATTGT 59.765 45.455 15.40 0.00 0.00 2.71
2145 7281 3.362706 AGCTCAGATCATTGTTGCCATT 58.637 40.909 0.00 0.00 0.00 3.16
2155 7291 8.408601 AGATCATTGTTGCCATTAGTTGTTATC 58.591 33.333 0.00 0.00 0.00 1.75
2200 7336 3.129462 CAGTCTCATCACCAGTACGACAT 59.871 47.826 0.00 0.00 0.00 3.06
2235 7371 0.041090 GGAGGGAAAATCCTTGGCCA 59.959 55.000 0.00 0.00 37.25 5.36
2240 7376 2.355007 GGGAAAATCCTTGGCCATTGTG 60.355 50.000 6.09 0.00 36.57 3.33
2249 7385 4.776837 TCCTTGGCCATTGTGATGTTTATT 59.223 37.500 6.09 0.00 0.00 1.40
2250 7386 5.954752 TCCTTGGCCATTGTGATGTTTATTA 59.045 36.000 6.09 0.00 0.00 0.98
2251 7387 6.610830 TCCTTGGCCATTGTGATGTTTATTAT 59.389 34.615 6.09 0.00 0.00 1.28
2253 7389 7.201938 CCTTGGCCATTGTGATGTTTATTATCT 60.202 37.037 6.09 0.00 0.00 1.98
2254 7390 8.759481 TTGGCCATTGTGATGTTTATTATCTA 57.241 30.769 6.09 0.00 0.00 1.98
2255 7391 8.165239 TGGCCATTGTGATGTTTATTATCTAC 57.835 34.615 0.00 0.00 0.00 2.59
2256 7392 7.230510 TGGCCATTGTGATGTTTATTATCTACC 59.769 37.037 0.00 0.00 0.00 3.18
2259 7395 8.786898 CCATTGTGATGTTTATTATCTACCTGG 58.213 37.037 0.00 0.00 0.00 4.45
2275 7411 2.175715 ACCTGGAAGTGAAAAGAAGCCT 59.824 45.455 0.00 0.00 0.00 4.58
2283 7419 5.254339 AGTGAAAAGAAGCCTTGTTTCAG 57.746 39.130 11.34 0.00 32.71 3.02
2285 7421 3.446873 TGAAAAGAAGCCTTGTTTCAGCA 59.553 39.130 0.00 0.00 30.13 4.41
2300 7436 2.368439 TCAGCAGCACAGACTTTGTTT 58.632 42.857 0.00 0.00 38.16 2.83
2303 7439 3.065233 CAGCAGCACAGACTTTGTTTGTA 59.935 43.478 0.00 0.00 38.16 2.41
2305 7441 3.791353 GCAGCACAGACTTTGTTTGTAAC 59.209 43.478 0.00 0.00 38.16 2.50
2307 7443 5.266242 CAGCACAGACTTTGTTTGTAACTC 58.734 41.667 0.00 0.00 38.16 3.01
2308 7444 4.941263 AGCACAGACTTTGTTTGTAACTCA 59.059 37.500 0.00 0.00 38.16 3.41
2309 7445 5.590259 AGCACAGACTTTGTTTGTAACTCAT 59.410 36.000 0.00 0.00 38.16 2.90
2311 7447 6.197096 GCACAGACTTTGTTTGTAACTCATTG 59.803 38.462 0.00 0.00 38.16 2.82
2312 7448 7.471721 CACAGACTTTGTTTGTAACTCATTGA 58.528 34.615 0.00 0.00 38.16 2.57
2313 7449 8.131100 CACAGACTTTGTTTGTAACTCATTGAT 58.869 33.333 0.00 0.00 38.16 2.57
2314 7450 8.345565 ACAGACTTTGTTTGTAACTCATTGATC 58.654 33.333 0.00 0.00 36.31 2.92
2315 7451 8.562892 CAGACTTTGTTTGTAACTCATTGATCT 58.437 33.333 0.00 0.00 0.00 2.75
2316 7452 8.562892 AGACTTTGTTTGTAACTCATTGATCTG 58.437 33.333 0.00 0.00 0.00 2.90
2323 7459 5.852827 TGTAACTCATTGATCTGACACACA 58.147 37.500 0.00 0.00 0.00 3.72
2341 7477 8.503196 TGACACACAGAAATTACAATGATGTAC 58.497 33.333 0.00 0.00 41.64 2.90
2431 7567 8.506168 AAAAGAAGTCTCATGTTTGTAACTCA 57.494 30.769 0.00 0.00 0.00 3.41
2452 7588 8.058667 ACTCATTGCAAACTCATTGATATTGA 57.941 30.769 1.71 0.00 41.85 2.57
2530 7667 3.032609 CTATCAAGCCGAGCCGCG 61.033 66.667 0.00 0.00 40.47 6.46
2586 7734 1.968540 GGAGTCACACCTGCCTTGC 60.969 63.158 0.00 0.00 0.00 4.01
2592 7740 2.358615 CACCTGCCTTGCGCTGTA 60.359 61.111 9.73 0.00 38.78 2.74
2632 7783 5.468072 ACCTCGTGTATTACTACATACTCCG 59.532 44.000 0.00 0.00 39.93 4.63
2680 7831 1.077169 TCTACTTGCAGAGGACCTCCA 59.923 52.381 18.32 7.12 38.89 3.86
2683 7834 0.321122 CTTGCAGAGGACCTCCACAC 60.321 60.000 18.32 5.85 38.89 3.82
2685 7836 1.004440 GCAGAGGACCTCCACACAC 60.004 63.158 18.32 0.00 38.89 3.82
2687 7838 0.034059 CAGAGGACCTCCACACACAC 59.966 60.000 18.32 0.00 38.89 3.82
2689 7840 0.687354 GAGGACCTCCACACACACAT 59.313 55.000 10.74 0.00 38.89 3.21
2691 7842 1.623811 AGGACCTCCACACACACATAC 59.376 52.381 0.00 0.00 38.89 2.39
2699 7850 3.255888 TCCACACACACATACAGAGAGAC 59.744 47.826 0.00 0.00 0.00 3.36
2700 7851 3.256879 CCACACACACATACAGAGAGACT 59.743 47.826 0.00 0.00 0.00 3.24
2701 7852 4.459337 CCACACACACATACAGAGAGACTA 59.541 45.833 0.00 0.00 0.00 2.59
2702 7853 5.392487 CCACACACACATACAGAGAGACTAG 60.392 48.000 0.00 0.00 0.00 2.57
2703 7854 4.156922 ACACACACATACAGAGAGACTAGC 59.843 45.833 0.00 0.00 0.00 3.42
2704 7855 4.156739 CACACACATACAGAGAGACTAGCA 59.843 45.833 0.00 0.00 0.00 3.49
2705 7856 4.767409 ACACACATACAGAGAGACTAGCAA 59.233 41.667 0.00 0.00 0.00 3.91
2706 7857 5.243954 ACACACATACAGAGAGACTAGCAAA 59.756 40.000 0.00 0.00 0.00 3.68
2707 7858 6.159293 CACACATACAGAGAGACTAGCAAAA 58.841 40.000 0.00 0.00 0.00 2.44
2708 7859 6.646653 CACACATACAGAGAGACTAGCAAAAA 59.353 38.462 0.00 0.00 0.00 1.94
2709 7860 6.870965 ACACATACAGAGAGACTAGCAAAAAG 59.129 38.462 0.00 0.00 0.00 2.27
2710 7861 6.312426 CACATACAGAGAGACTAGCAAAAAGG 59.688 42.308 0.00 0.00 0.00 3.11
2711 7862 3.669536 ACAGAGAGACTAGCAAAAAGGC 58.330 45.455 0.00 0.00 0.00 4.35
2712 7863 3.006247 CAGAGAGACTAGCAAAAAGGCC 58.994 50.000 0.00 0.00 0.00 5.19
2713 7864 2.026729 AGAGAGACTAGCAAAAAGGCCC 60.027 50.000 0.00 0.00 0.00 5.80
2714 7865 1.087501 GAGACTAGCAAAAAGGCCCG 58.912 55.000 0.00 0.00 0.00 6.13
2715 7866 0.400594 AGACTAGCAAAAAGGCCCGT 59.599 50.000 0.00 0.00 0.00 5.28
2716 7867 0.521735 GACTAGCAAAAAGGCCCGTG 59.478 55.000 0.00 0.00 0.00 4.94
2717 7868 1.212751 CTAGCAAAAAGGCCCGTGC 59.787 57.895 0.00 4.01 37.26 5.34
2718 7869 2.527547 CTAGCAAAAAGGCCCGTGCG 62.528 60.000 0.00 0.00 41.90 5.34
2719 7870 4.279043 GCAAAAAGGCCCGTGCGT 62.279 61.111 0.00 0.00 38.85 5.24
2720 7871 2.415426 CAAAAAGGCCCGTGCGTT 59.585 55.556 0.00 0.00 46.85 4.84
2721 7872 1.655329 CAAAAAGGCCCGTGCGTTA 59.345 52.632 0.00 0.00 44.30 3.18
2722 7873 0.242555 CAAAAAGGCCCGTGCGTTAT 59.757 50.000 0.00 0.00 44.30 1.89
2723 7874 1.469308 CAAAAAGGCCCGTGCGTTATA 59.531 47.619 0.00 0.00 44.30 0.98
2724 7875 1.375551 AAAAGGCCCGTGCGTTATAG 58.624 50.000 0.00 0.00 44.30 1.31
2725 7876 0.538118 AAAGGCCCGTGCGTTATAGA 59.462 50.000 0.00 0.00 44.30 1.98
2726 7877 0.538118 AAGGCCCGTGCGTTATAGAA 59.462 50.000 0.00 0.00 43.33 2.10
2727 7878 0.179092 AGGCCCGTGCGTTATAGAAC 60.179 55.000 0.00 0.00 38.85 3.01
2728 7879 1.156034 GGCCCGTGCGTTATAGAACC 61.156 60.000 0.00 0.00 38.85 3.62
2729 7880 0.179092 GCCCGTGCGTTATAGAACCT 60.179 55.000 0.00 0.00 31.28 3.50
2730 7881 1.849097 CCCGTGCGTTATAGAACCTC 58.151 55.000 0.00 0.00 31.28 3.85
2731 7882 1.407979 CCCGTGCGTTATAGAACCTCT 59.592 52.381 0.00 0.00 31.28 3.69
2732 7883 2.620115 CCCGTGCGTTATAGAACCTCTA 59.380 50.000 0.00 0.00 32.87 2.43
2733 7884 3.304525 CCCGTGCGTTATAGAACCTCTAG 60.305 52.174 0.00 0.00 31.67 2.43
2734 7885 3.562973 CCGTGCGTTATAGAACCTCTAGA 59.437 47.826 0.00 0.00 31.67 2.43
2735 7886 4.525686 CGTGCGTTATAGAACCTCTAGAC 58.474 47.826 0.00 0.00 31.67 2.59
2736 7887 4.554330 CGTGCGTTATAGAACCTCTAGACC 60.554 50.000 0.00 0.00 31.67 3.85
2737 7888 4.579753 GTGCGTTATAGAACCTCTAGACCT 59.420 45.833 0.00 0.00 31.67 3.85
2738 7889 5.067544 GTGCGTTATAGAACCTCTAGACCTT 59.932 44.000 0.00 0.00 31.67 3.50
2739 7890 5.655532 TGCGTTATAGAACCTCTAGACCTTT 59.344 40.000 0.00 0.00 31.67 3.11
2740 7891 6.183360 TGCGTTATAGAACCTCTAGACCTTTC 60.183 42.308 0.00 0.00 31.67 2.62
2741 7892 6.039605 GCGTTATAGAACCTCTAGACCTTTCT 59.960 42.308 9.58 9.58 31.67 2.52
2742 7893 7.416551 GCGTTATAGAACCTCTAGACCTTTCTT 60.417 40.741 9.83 3.76 31.67 2.52
2743 7894 8.130469 CGTTATAGAACCTCTAGACCTTTCTTC 58.870 40.741 9.83 0.00 31.67 2.87
2744 7895 9.192642 GTTATAGAACCTCTAGACCTTTCTTCT 57.807 37.037 9.83 3.80 31.67 2.85
2745 7896 7.891498 ATAGAACCTCTAGACCTTTCTTCTC 57.109 40.000 9.83 0.00 31.67 2.87
2746 7897 5.020795 AGAACCTCTAGACCTTTCTTCTCC 58.979 45.833 0.00 0.00 32.75 3.71
2747 7898 4.685513 ACCTCTAGACCTTTCTTCTCCT 57.314 45.455 0.00 0.00 32.75 3.69
2748 7899 4.606210 ACCTCTAGACCTTTCTTCTCCTC 58.394 47.826 0.00 0.00 32.75 3.71
2749 7900 4.293901 ACCTCTAGACCTTTCTTCTCCTCT 59.706 45.833 0.00 0.00 32.75 3.69
2750 7901 4.887655 CCTCTAGACCTTTCTTCTCCTCTC 59.112 50.000 0.00 0.00 32.75 3.20
2751 7902 4.862371 TCTAGACCTTTCTTCTCCTCTCC 58.138 47.826 0.00 0.00 32.75 3.71
2752 7903 3.551635 AGACCTTTCTTCTCCTCTCCA 57.448 47.619 0.00 0.00 0.00 3.86
2753 7904 3.440127 AGACCTTTCTTCTCCTCTCCAG 58.560 50.000 0.00 0.00 0.00 3.86
2754 7905 3.169908 GACCTTTCTTCTCCTCTCCAGT 58.830 50.000 0.00 0.00 0.00 4.00
2755 7906 2.903135 ACCTTTCTTCTCCTCTCCAGTG 59.097 50.000 0.00 0.00 0.00 3.66
2756 7907 2.354604 CCTTTCTTCTCCTCTCCAGTGC 60.355 54.545 0.00 0.00 0.00 4.40
2757 7908 2.317371 TTCTTCTCCTCTCCAGTGCT 57.683 50.000 0.00 0.00 0.00 4.40
2758 7909 3.458044 TTCTTCTCCTCTCCAGTGCTA 57.542 47.619 0.00 0.00 0.00 3.49
2759 7910 2.729194 TCTTCTCCTCTCCAGTGCTAC 58.271 52.381 0.00 0.00 0.00 3.58
2760 7911 2.310349 TCTTCTCCTCTCCAGTGCTACT 59.690 50.000 0.00 0.00 0.00 2.57
2761 7912 2.136298 TCTCCTCTCCAGTGCTACTG 57.864 55.000 8.73 8.73 45.53 2.74
2762 7913 1.356059 TCTCCTCTCCAGTGCTACTGT 59.644 52.381 13.06 0.00 44.50 3.55
2763 7914 2.576648 TCTCCTCTCCAGTGCTACTGTA 59.423 50.000 13.06 0.07 44.50 2.74
2764 7915 2.948979 CTCCTCTCCAGTGCTACTGTAG 59.051 54.545 10.48 10.48 44.50 2.74
2765 7916 2.028130 CCTCTCCAGTGCTACTGTAGG 58.972 57.143 16.09 12.17 44.50 3.18
2766 7917 2.357257 CCTCTCCAGTGCTACTGTAGGA 60.357 54.545 16.09 10.90 44.50 2.94
2767 7918 2.948979 CTCTCCAGTGCTACTGTAGGAG 59.051 54.545 16.09 13.68 44.50 3.69
2768 7919 2.028130 CTCCAGTGCTACTGTAGGAGG 58.972 57.143 16.09 11.68 44.50 4.30
2769 7920 0.461961 CCAGTGCTACTGTAGGAGGC 59.538 60.000 16.09 3.62 44.50 4.70
2770 7921 0.101399 CAGTGCTACTGTAGGAGGCG 59.899 60.000 16.09 1.74 41.19 5.52
2771 7922 0.034380 AGTGCTACTGTAGGAGGCGA 60.034 55.000 16.09 0.00 0.00 5.54
2772 7923 1.033574 GTGCTACTGTAGGAGGCGAT 58.966 55.000 16.09 0.00 0.00 4.58
2773 7924 2.158652 AGTGCTACTGTAGGAGGCGATA 60.159 50.000 16.09 0.00 0.00 2.92
2774 7925 2.621998 GTGCTACTGTAGGAGGCGATAA 59.378 50.000 16.09 0.00 0.00 1.75
2775 7926 2.885266 TGCTACTGTAGGAGGCGATAAG 59.115 50.000 16.09 0.00 0.00 1.73
2776 7927 2.229302 GCTACTGTAGGAGGCGATAAGG 59.771 54.545 16.09 0.00 0.00 2.69
2777 7928 1.705873 ACTGTAGGAGGCGATAAGGG 58.294 55.000 0.00 0.00 0.00 3.95
2778 7929 1.217183 ACTGTAGGAGGCGATAAGGGA 59.783 52.381 0.00 0.00 0.00 4.20
2779 7930 1.889829 CTGTAGGAGGCGATAAGGGAG 59.110 57.143 0.00 0.00 0.00 4.30
2780 7931 1.258676 GTAGGAGGCGATAAGGGAGG 58.741 60.000 0.00 0.00 0.00 4.30
2781 7932 0.542232 TAGGAGGCGATAAGGGAGGC 60.542 60.000 0.00 0.00 0.00 4.70
2782 7933 2.340443 GAGGCGATAAGGGAGGCG 59.660 66.667 0.00 0.00 35.47 5.52
2783 7934 2.123425 AGGCGATAAGGGAGGCGA 60.123 61.111 0.00 0.00 35.47 5.54
2784 7935 1.745320 GAGGCGATAAGGGAGGCGAA 61.745 60.000 0.00 0.00 35.47 4.70
2785 7936 1.145377 GGCGATAAGGGAGGCGAAA 59.855 57.895 0.00 0.00 0.00 3.46
2786 7937 0.880718 GGCGATAAGGGAGGCGAAAG 60.881 60.000 0.00 0.00 0.00 2.62
2787 7938 0.880718 GCGATAAGGGAGGCGAAAGG 60.881 60.000 0.00 0.00 0.00 3.11
2788 7939 0.750850 CGATAAGGGAGGCGAAAGGA 59.249 55.000 0.00 0.00 0.00 3.36
2789 7940 1.269831 CGATAAGGGAGGCGAAAGGAG 60.270 57.143 0.00 0.00 0.00 3.69
2790 7941 1.070914 GATAAGGGAGGCGAAAGGAGG 59.929 57.143 0.00 0.00 0.00 4.30
2791 7942 0.981277 TAAGGGAGGCGAAAGGAGGG 60.981 60.000 0.00 0.00 0.00 4.30
2792 7943 4.491409 GGGAGGCGAAAGGAGGGC 62.491 72.222 0.00 0.00 0.00 5.19
2793 7944 4.840005 GGAGGCGAAAGGAGGGCG 62.840 72.222 0.00 0.00 0.00 6.13
2794 7945 3.771160 GAGGCGAAAGGAGGGCGA 61.771 66.667 0.00 0.00 0.00 5.54
2795 7946 4.083862 AGGCGAAAGGAGGGCGAC 62.084 66.667 0.00 0.00 0.00 5.19
2817 7968 4.477975 GTCGCTCCGGTCGGTGAG 62.478 72.222 14.56 11.44 36.47 3.51
2850 8001 4.796231 CGTCTTCGGTGCCCCTCG 62.796 72.222 0.00 0.00 0.00 4.63
2851 8002 4.452733 GTCTTCGGTGCCCCTCGG 62.453 72.222 0.00 0.00 0.00 4.63
2863 8014 2.770048 CCTCGGGGCCTTGGAGAT 60.770 66.667 17.42 0.00 0.00 2.75
2864 8015 2.507944 CTCGGGGCCTTGGAGATG 59.492 66.667 0.84 0.00 0.00 2.90
2865 8016 3.764160 CTCGGGGCCTTGGAGATGC 62.764 68.421 0.84 0.00 0.00 3.91
2866 8017 4.113815 CGGGGCCTTGGAGATGCA 62.114 66.667 0.84 0.00 0.00 3.96
2867 8018 2.123982 GGGGCCTTGGAGATGCAG 60.124 66.667 0.84 0.00 0.00 4.41
2868 8019 2.832201 GGGCCTTGGAGATGCAGC 60.832 66.667 0.84 0.00 0.00 5.25
2869 8020 3.207669 GGCCTTGGAGATGCAGCG 61.208 66.667 0.00 0.00 0.00 5.18
2870 8021 3.207669 GCCTTGGAGATGCAGCGG 61.208 66.667 0.00 0.00 0.00 5.52
2871 8022 2.586245 CCTTGGAGATGCAGCGGA 59.414 61.111 0.00 0.00 0.00 5.54
2872 8023 1.817099 CCTTGGAGATGCAGCGGAC 60.817 63.158 0.00 0.00 0.00 4.79
2873 8024 1.817099 CTTGGAGATGCAGCGGACC 60.817 63.158 0.00 2.49 0.00 4.46
2874 8025 2.526450 CTTGGAGATGCAGCGGACCA 62.526 60.000 12.80 12.80 0.00 4.02
2875 8026 2.512515 GGAGATGCAGCGGACCAC 60.513 66.667 10.07 0.00 0.00 4.16
2877 8028 4.457496 AGATGCAGCGGACCACGG 62.457 66.667 0.00 0.00 44.51 4.94
2884 8035 4.754667 GCGGACCACGGTTCTCCC 62.755 72.222 0.00 0.00 44.51 4.30
2885 8036 4.078516 CGGACCACGGTTCTCCCC 62.079 72.222 0.00 0.00 39.42 4.81
2886 8037 3.714001 GGACCACGGTTCTCCCCC 61.714 72.222 0.00 0.00 0.00 5.40
2905 8056 2.434359 GCCGGTGGCTGTACTGTC 60.434 66.667 1.90 0.00 46.69 3.51
2906 8057 2.943978 GCCGGTGGCTGTACTGTCT 61.944 63.158 1.90 0.00 46.69 3.41
2907 8058 1.215647 CCGGTGGCTGTACTGTCTC 59.784 63.158 5.91 2.05 0.00 3.36
2908 8059 1.251527 CCGGTGGCTGTACTGTCTCT 61.252 60.000 5.91 0.00 0.00 3.10
2909 8060 0.109086 CGGTGGCTGTACTGTCTCTG 60.109 60.000 5.91 3.61 0.00 3.35
2910 8061 0.390472 GGTGGCTGTACTGTCTCTGC 60.390 60.000 5.91 0.00 0.00 4.26
2911 8062 0.734253 GTGGCTGTACTGTCTCTGCG 60.734 60.000 5.91 0.00 0.00 5.18
2912 8063 1.807573 GGCTGTACTGTCTCTGCGC 60.808 63.158 0.00 0.00 0.00 6.09
2913 8064 1.214062 GCTGTACTGTCTCTGCGCT 59.786 57.895 9.73 0.00 0.00 5.92
2914 8065 0.452184 GCTGTACTGTCTCTGCGCTA 59.548 55.000 9.73 0.00 0.00 4.26
2915 8066 1.066303 GCTGTACTGTCTCTGCGCTAT 59.934 52.381 9.73 0.00 0.00 2.97
2916 8067 2.725490 CTGTACTGTCTCTGCGCTATG 58.275 52.381 9.73 0.00 0.00 2.23
2917 8068 2.092323 TGTACTGTCTCTGCGCTATGT 58.908 47.619 9.73 0.55 0.00 2.29
2918 8069 3.275999 TGTACTGTCTCTGCGCTATGTA 58.724 45.455 9.73 0.00 0.00 2.29
2919 8070 3.312697 TGTACTGTCTCTGCGCTATGTAG 59.687 47.826 9.73 0.00 0.00 2.74
2920 8071 1.678627 ACTGTCTCTGCGCTATGTAGG 59.321 52.381 9.73 0.00 0.00 3.18
2921 8072 0.385751 TGTCTCTGCGCTATGTAGGC 59.614 55.000 9.73 0.63 0.00 3.93
2922 8073 0.671251 GTCTCTGCGCTATGTAGGCT 59.329 55.000 9.73 0.00 0.00 4.58
2923 8074 1.880675 GTCTCTGCGCTATGTAGGCTA 59.119 52.381 9.73 0.00 0.00 3.93
2924 8075 2.095466 GTCTCTGCGCTATGTAGGCTAG 60.095 54.545 9.73 0.00 0.00 3.42
2925 8076 1.883275 CTCTGCGCTATGTAGGCTAGT 59.117 52.381 9.73 0.00 0.00 2.57
2926 8077 2.294791 CTCTGCGCTATGTAGGCTAGTT 59.705 50.000 9.73 0.00 0.00 2.24
2927 8078 2.293677 TCTGCGCTATGTAGGCTAGTTC 59.706 50.000 9.73 0.00 0.00 3.01
2928 8079 2.294791 CTGCGCTATGTAGGCTAGTTCT 59.705 50.000 9.73 0.00 0.00 3.01
2929 8080 2.293677 TGCGCTATGTAGGCTAGTTCTC 59.706 50.000 9.73 0.00 0.00 2.87
2930 8081 2.351932 GCGCTATGTAGGCTAGTTCTCC 60.352 54.545 0.00 0.00 0.00 3.71
2931 8082 2.095668 CGCTATGTAGGCTAGTTCTCCG 60.096 54.545 0.00 0.00 0.00 4.63
2932 8083 2.229302 GCTATGTAGGCTAGTTCTCCGG 59.771 54.545 0.00 0.00 0.00 5.14
2933 8084 1.041437 ATGTAGGCTAGTTCTCCGGC 58.959 55.000 0.00 0.00 0.00 6.13
2934 8085 1.041447 TGTAGGCTAGTTCTCCGGCC 61.041 60.000 0.00 0.00 44.38 6.13
2935 8086 1.041447 GTAGGCTAGTTCTCCGGCCA 61.041 60.000 2.24 0.00 46.23 5.36
2936 8087 0.324923 TAGGCTAGTTCTCCGGCCAA 60.325 55.000 2.24 0.00 46.23 4.52
2937 8088 1.153349 GGCTAGTTCTCCGGCCAAG 60.153 63.158 2.24 0.00 43.59 3.61
2938 8089 1.597461 GCTAGTTCTCCGGCCAAGT 59.403 57.895 2.24 0.00 0.00 3.16
2939 8090 0.036294 GCTAGTTCTCCGGCCAAGTT 60.036 55.000 2.24 0.00 0.00 2.66
2940 8091 2.007547 GCTAGTTCTCCGGCCAAGTTC 61.008 57.143 2.24 0.00 0.00 3.01
2941 8092 0.245539 TAGTTCTCCGGCCAAGTTCG 59.754 55.000 2.24 0.00 0.00 3.95
2942 8093 2.358247 TTCTCCGGCCAAGTTCGC 60.358 61.111 2.24 0.00 0.00 4.70
2943 8094 2.879233 TTCTCCGGCCAAGTTCGCT 61.879 57.895 2.24 0.00 0.00 4.93
2944 8095 1.537814 TTCTCCGGCCAAGTTCGCTA 61.538 55.000 2.24 0.00 0.00 4.26
2945 8096 1.144057 CTCCGGCCAAGTTCGCTAT 59.856 57.895 2.24 0.00 0.00 2.97
2946 8097 0.876342 CTCCGGCCAAGTTCGCTATC 60.876 60.000 2.24 0.00 0.00 2.08
2947 8098 1.153449 CCGGCCAAGTTCGCTATCA 60.153 57.895 2.24 0.00 0.00 2.15
2948 8099 1.429148 CCGGCCAAGTTCGCTATCAC 61.429 60.000 2.24 0.00 0.00 3.06
2949 8100 1.752501 CGGCCAAGTTCGCTATCACG 61.753 60.000 2.24 0.00 0.00 4.35
2950 8101 1.429148 GGCCAAGTTCGCTATCACGG 61.429 60.000 0.00 0.00 0.00 4.94
2951 8102 2.006772 CCAAGTTCGCTATCACGGC 58.993 57.895 0.00 0.00 0.00 5.68
2952 8103 0.739462 CCAAGTTCGCTATCACGGCA 60.739 55.000 0.00 0.00 0.00 5.69
2953 8104 0.370273 CAAGTTCGCTATCACGGCAC 59.630 55.000 0.00 0.00 0.00 5.01
2954 8105 0.739813 AAGTTCGCTATCACGGCACC 60.740 55.000 0.00 0.00 0.00 5.01
2955 8106 2.202690 TTCGCTATCACGGCACCG 60.203 61.111 7.71 7.71 46.03 4.94
2956 8107 3.709880 TTCGCTATCACGGCACCGG 62.710 63.158 14.51 0.00 44.69 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 1.298859 AAAATGTGACTCCGCCTCGC 61.299 55.000 0.00 0.00 0.00 5.03
50 51 0.443869 CGCCAGAAAATGTGACTCCG 59.556 55.000 0.00 0.00 0.00 4.63
62 63 4.169696 CCATACGGGGCGCCAGAA 62.170 66.667 30.85 10.88 0.00 3.02
70 71 0.107214 AACTGATGCACCATACGGGG 60.107 55.000 0.00 0.00 42.91 5.73
135 136 4.631377 GTCAGAACGATGATGGATTTGTCA 59.369 41.667 0.00 0.00 0.00 3.58
152 153 4.228567 TGCCGGTGCACGTCAGAA 62.229 61.111 11.45 0.00 44.23 3.02
184 185 1.950909 CTATTCTTCCTCGTCGGAGCT 59.049 52.381 0.00 0.00 44.28 4.09
189 190 3.304257 CATGCTCTATTCTTCCTCGTCG 58.696 50.000 0.00 0.00 0.00 5.12
201 202 0.678395 CGCTGTCTCCCATGCTCTAT 59.322 55.000 0.00 0.00 0.00 1.98
203 204 2.729479 CCGCTGTCTCCCATGCTCT 61.729 63.158 0.00 0.00 0.00 4.09
205 206 4.479993 GCCGCTGTCTCCCATGCT 62.480 66.667 0.00 0.00 0.00 3.79
243 244 1.084370 GTAGGGCATGAGACACACGC 61.084 60.000 0.00 0.00 36.94 5.34
244 245 0.532573 AGTAGGGCATGAGACACACG 59.467 55.000 0.00 0.00 0.00 4.49
245 246 1.827969 AGAGTAGGGCATGAGACACAC 59.172 52.381 0.00 0.00 0.00 3.82
246 247 2.238084 AGAGTAGGGCATGAGACACA 57.762 50.000 0.00 0.00 0.00 3.72
257 258 1.326328 GCCGGTAAGGTAGAGTAGGG 58.674 60.000 1.90 0.00 43.70 3.53
284 285 1.896660 GCGCTCCCCAAAGTGTTGA 60.897 57.895 0.00 0.00 36.83 3.18
315 316 2.359850 TTCTGCCGTGGCCATGTC 60.360 61.111 23.39 12.06 41.09 3.06
339 340 6.072508 TGTGAAACATAATCAAACCAGAGCTC 60.073 38.462 5.27 5.27 45.67 4.09
341 342 6.012658 TGTGAAACATAATCAAACCAGAGC 57.987 37.500 0.00 0.00 45.67 4.09
364 365 9.142515 CCGCAAATTCATATTATTACATGCAAT 57.857 29.630 0.00 0.00 0.00 3.56
386 387 4.456566 GGACACCTTAAATTAGAAACCGCA 59.543 41.667 0.00 0.00 0.00 5.69
387 388 4.436451 CGGACACCTTAAATTAGAAACCGC 60.436 45.833 0.00 0.00 0.00 5.68
388 389 4.093850 CCGGACACCTTAAATTAGAAACCG 59.906 45.833 0.00 0.00 36.09 4.44
389 390 5.005740 ACCGGACACCTTAAATTAGAAACC 58.994 41.667 9.46 0.00 0.00 3.27
390 391 6.564709 AACCGGACACCTTAAATTAGAAAC 57.435 37.500 9.46 0.00 0.00 2.78
391 392 9.603921 CTATAACCGGACACCTTAAATTAGAAA 57.396 33.333 9.46 0.00 0.00 2.52
392 393 8.980596 TCTATAACCGGACACCTTAAATTAGAA 58.019 33.333 9.46 0.00 0.00 2.10
393 394 8.537728 TCTATAACCGGACACCTTAAATTAGA 57.462 34.615 9.46 0.00 0.00 2.10
394 395 9.774413 ATTCTATAACCGGACACCTTAAATTAG 57.226 33.333 9.46 0.00 0.00 1.73
395 396 9.768662 GATTCTATAACCGGACACCTTAAATTA 57.231 33.333 9.46 0.00 0.00 1.40
396 397 8.269317 TGATTCTATAACCGGACACCTTAAATT 58.731 33.333 9.46 0.00 0.00 1.82
397 398 7.798071 TGATTCTATAACCGGACACCTTAAAT 58.202 34.615 9.46 0.00 0.00 1.40
398 399 7.185318 TGATTCTATAACCGGACACCTTAAA 57.815 36.000 9.46 0.00 0.00 1.52
399 400 6.795144 TGATTCTATAACCGGACACCTTAA 57.205 37.500 9.46 0.00 0.00 1.85
402 403 5.687166 TTTGATTCTATAACCGGACACCT 57.313 39.130 9.46 0.00 0.00 4.00
430 431 2.492484 GGATACTGACTGGTCACGTCTT 59.508 50.000 0.00 0.00 35.46 3.01
436 437 1.182667 CCACGGATACTGACTGGTCA 58.817 55.000 3.34 3.34 38.06 4.02
440 441 1.799181 CGCTTCCACGGATACTGACTG 60.799 57.143 0.00 0.00 0.00 3.51
441 442 0.456221 CGCTTCCACGGATACTGACT 59.544 55.000 0.00 0.00 0.00 3.41
516 517 9.569122 AAGGATGCTTTTTACTACAAAGTAAGA 57.431 29.630 0.00 0.00 46.28 2.10
517 518 9.612620 CAAGGATGCTTTTTACTACAAAGTAAG 57.387 33.333 0.00 0.00 46.28 2.34
518 519 8.573035 CCAAGGATGCTTTTTACTACAAAGTAA 58.427 33.333 0.00 0.00 44.61 2.24
519 520 7.940137 TCCAAGGATGCTTTTTACTACAAAGTA 59.060 33.333 0.00 0.00 37.15 2.24
520 521 6.775629 TCCAAGGATGCTTTTTACTACAAAGT 59.224 34.615 0.00 0.00 39.91 2.66
521 522 7.214467 TCCAAGGATGCTTTTTACTACAAAG 57.786 36.000 0.00 0.00 34.80 2.77
522 523 7.601856 CATCCAAGGATGCTTTTTACTACAAA 58.398 34.615 15.57 0.00 44.27 2.83
523 524 7.156876 CATCCAAGGATGCTTTTTACTACAA 57.843 36.000 15.57 0.00 44.27 2.41
524 525 6.757897 CATCCAAGGATGCTTTTTACTACA 57.242 37.500 15.57 0.00 44.27 2.74
575 576 1.156736 CAAAGAGTAACGGCACCCTG 58.843 55.000 0.00 0.00 0.00 4.45
576 577 0.605589 GCAAAGAGTAACGGCACCCT 60.606 55.000 0.00 0.00 0.00 4.34
577 578 0.605589 AGCAAAGAGTAACGGCACCC 60.606 55.000 0.00 0.00 0.00 4.61
578 579 1.069227 CAAGCAAAGAGTAACGGCACC 60.069 52.381 0.00 0.00 0.00 5.01
579 580 1.602377 ACAAGCAAAGAGTAACGGCAC 59.398 47.619 0.00 0.00 0.00 5.01
580 581 1.871039 GACAAGCAAAGAGTAACGGCA 59.129 47.619 0.00 0.00 0.00 5.69
581 582 2.096218 CAGACAAGCAAAGAGTAACGGC 60.096 50.000 0.00 0.00 0.00 5.68
582 583 2.480419 CCAGACAAGCAAAGAGTAACGG 59.520 50.000 0.00 0.00 0.00 4.44
583 584 2.096218 GCCAGACAAGCAAAGAGTAACG 60.096 50.000 0.00 0.00 0.00 3.18
584 585 3.142174 AGCCAGACAAGCAAAGAGTAAC 58.858 45.455 0.00 0.00 0.00 2.50
606 607 2.170187 ACCAAAAGGCAATGCTGTGAAA 59.830 40.909 4.82 0.00 0.00 2.69
609 610 2.137523 GAACCAAAAGGCAATGCTGTG 58.862 47.619 4.82 0.00 0.00 3.66
664 665 2.303175 AGTACCACGGTGCATTGTTTT 58.697 42.857 7.08 0.00 33.14 2.43
667 668 1.621814 ACTAGTACCACGGTGCATTGT 59.378 47.619 7.08 0.00 33.14 2.71
668 669 2.268298 GACTAGTACCACGGTGCATTG 58.732 52.381 7.08 0.00 33.14 2.82
677 678 4.177026 CAAGAGCACATGACTAGTACCAC 58.823 47.826 0.00 0.00 0.00 4.16
900 906 0.767375 ATCCAATCGTGGGGAGATGG 59.233 55.000 0.00 0.00 46.01 3.51
932 938 2.529136 ACTGGGTGCCTGGCAGTA 60.529 61.111 24.10 10.37 40.08 2.74
933 939 4.275508 CACTGGGTGCCTGGCAGT 62.276 66.667 24.10 13.80 40.08 4.40
934 940 3.914579 CTCACTGGGTGCCTGGCAG 62.915 68.421 24.10 13.07 40.08 4.85
935 941 3.957586 CTCACTGGGTGCCTGGCA 61.958 66.667 19.30 19.30 35.60 4.92
937 943 3.957586 TGCTCACTGGGTGCCTGG 61.958 66.667 1.02 0.00 35.15 4.45
939 945 3.170672 TGTGCTCACTGGGTGCCT 61.171 61.111 1.02 0.00 35.15 4.75
986 1016 3.451894 CCATTGTCCCGGCAAGGC 61.452 66.667 0.00 0.00 39.21 4.35
1027 4464 2.354188 CAACACTCGCGGTCGTGA 60.354 61.111 23.67 6.46 36.96 4.35
1033 4479 3.039202 GAATGGGCAACACTCGCGG 62.039 63.158 6.13 0.00 39.74 6.46
1040 4486 2.277591 GCCAGCAGAATGGGCAACA 61.278 57.895 0.00 0.00 42.19 3.33
1503 5006 4.824166 CACAGCAGCGCCGCAATC 62.824 66.667 19.35 0.00 0.00 2.67
1699 5208 4.100189 AGAGTTGAGATTAATGGAGTCGGG 59.900 45.833 0.00 0.00 0.00 5.14
1717 5318 2.297315 TGACGCATTCACTCTCAGAGTT 59.703 45.455 3.92 0.00 41.37 3.01
1721 5322 2.200067 GGATGACGCATTCACTCTCAG 58.800 52.381 0.00 0.00 36.92 3.35
1734 5351 4.395854 TGTTCCAAGAAATCATGGATGACG 59.604 41.667 8.09 0.00 42.50 4.35
1735 5352 5.163581 CCTGTTCCAAGAAATCATGGATGAC 60.164 44.000 8.09 5.61 42.50 3.06
1736 5353 4.951715 CCTGTTCCAAGAAATCATGGATGA 59.048 41.667 8.09 0.00 42.50 2.92
1747 5371 2.552155 CGATCCCAACCTGTTCCAAGAA 60.552 50.000 0.00 0.00 0.00 2.52
1846 5501 0.038892 TCCACGTACTTGAGGTTCGC 60.039 55.000 0.00 0.00 41.34 4.70
2108 7244 4.900154 CTCGTTGGAGCCTGACTC 57.100 61.111 0.00 0.00 45.45 3.36
2145 7281 5.601583 TCCTACAATGCCGATAACAACTA 57.398 39.130 0.00 0.00 0.00 2.24
2155 7291 2.151202 ACAGTTGTTCCTACAATGCCG 58.849 47.619 0.00 0.00 45.41 5.69
2172 7308 4.527509 ACTGGTGATGAGACTGTTACAG 57.472 45.455 11.21 11.21 37.52 2.74
2240 7376 9.832445 TTCACTTCCAGGTAGATAATAAACATC 57.168 33.333 0.00 0.00 0.00 3.06
2249 7385 6.407202 GCTTCTTTTCACTTCCAGGTAGATA 58.593 40.000 0.00 0.00 0.00 1.98
2250 7386 5.249420 GCTTCTTTTCACTTCCAGGTAGAT 58.751 41.667 0.00 0.00 0.00 1.98
2251 7387 4.505039 GGCTTCTTTTCACTTCCAGGTAGA 60.505 45.833 0.00 0.00 0.00 2.59
2253 7389 3.394606 AGGCTTCTTTTCACTTCCAGGTA 59.605 43.478 0.00 0.00 0.00 3.08
2254 7390 2.175715 AGGCTTCTTTTCACTTCCAGGT 59.824 45.455 0.00 0.00 0.00 4.00
2255 7391 2.868899 AGGCTTCTTTTCACTTCCAGG 58.131 47.619 0.00 0.00 0.00 4.45
2256 7392 3.633986 ACAAGGCTTCTTTTCACTTCCAG 59.366 43.478 0.00 0.00 0.00 3.86
2259 7395 5.650543 TGAAACAAGGCTTCTTTTCACTTC 58.349 37.500 21.45 3.42 28.10 3.01
2275 7411 2.042686 AGTCTGTGCTGCTGAAACAA 57.957 45.000 0.00 0.00 0.00 2.83
2283 7419 2.566952 ACAAACAAAGTCTGTGCTGC 57.433 45.000 0.00 0.00 38.67 5.25
2285 7421 4.941263 TGAGTTACAAACAAAGTCTGTGCT 59.059 37.500 0.00 0.00 38.67 4.40
2300 7436 5.852827 TGTGTGTCAGATCAATGAGTTACA 58.147 37.500 0.00 0.00 0.00 2.41
2303 7439 5.219343 TCTGTGTGTCAGATCAATGAGTT 57.781 39.130 0.00 0.00 46.77 3.01
2313 7449 7.445096 ACATCATTGTAATTTCTGTGTGTCAGA 59.555 33.333 0.00 0.00 41.81 3.27
2314 7450 7.587629 ACATCATTGTAATTTCTGTGTGTCAG 58.412 34.615 0.00 0.00 38.74 3.51
2315 7451 7.509141 ACATCATTGTAATTTCTGTGTGTCA 57.491 32.000 0.00 0.00 33.16 3.58
2316 7452 8.503196 TGTACATCATTGTAATTTCTGTGTGTC 58.497 33.333 0.00 0.00 39.96 3.67
2328 7464 9.898152 TTCCAATCTATGTGTACATCATTGTAA 57.102 29.630 18.67 12.09 39.96 2.41
2336 7472 7.875041 GCTGTAGATTCCAATCTATGTGTACAT 59.125 37.037 11.37 2.75 46.42 2.29
2341 7477 5.176406 CGTGCTGTAGATTCCAATCTATGTG 59.824 44.000 11.37 6.93 46.42 3.21
2376 7512 1.806542 TGCGAGAAAACATGAGGCTTC 59.193 47.619 0.00 0.00 0.00 3.86
2378 7514 1.896220 TTGCGAGAAAACATGAGGCT 58.104 45.000 0.00 0.00 0.00 4.58
2414 7550 6.631971 TTGCAATGAGTTACAAACATGAGA 57.368 33.333 0.00 0.00 0.00 3.27
2422 7558 7.036996 TCAATGAGTTTGCAATGAGTTACAA 57.963 32.000 0.00 0.00 35.16 2.41
2431 7567 7.123098 TCCAGTCAATATCAATGAGTTTGCAAT 59.877 33.333 0.00 0.00 35.16 3.56
2452 7588 9.264653 TCATTGATAGATATTGATAGCTCCAGT 57.735 33.333 0.00 0.00 30.67 4.00
2586 7734 2.345641 CGTTCCTTCAATCTGTACAGCG 59.654 50.000 18.45 9.00 0.00 5.18
2660 7811 1.077169 TGGAGGTCCTCTGCAAGTAGA 59.923 52.381 18.58 0.00 40.95 2.59
2680 7831 4.156922 GCTAGTCTCTCTGTATGTGTGTGT 59.843 45.833 0.00 0.00 0.00 3.72
2683 7834 4.972514 TGCTAGTCTCTCTGTATGTGTG 57.027 45.455 0.00 0.00 0.00 3.82
2685 7836 6.312426 CCTTTTTGCTAGTCTCTCTGTATGTG 59.688 42.308 0.00 0.00 0.00 3.21
2687 7838 5.293079 GCCTTTTTGCTAGTCTCTCTGTATG 59.707 44.000 0.00 0.00 0.00 2.39
2689 7840 4.322801 GGCCTTTTTGCTAGTCTCTCTGTA 60.323 45.833 0.00 0.00 0.00 2.74
2691 7842 3.006247 GGCCTTTTTGCTAGTCTCTCTG 58.994 50.000 0.00 0.00 0.00 3.35
2699 7850 1.212751 GCACGGGCCTTTTTGCTAG 59.787 57.895 0.00 0.00 32.00 3.42
2700 7851 2.622011 CGCACGGGCCTTTTTGCTA 61.622 57.895 2.82 0.00 36.38 3.49
2701 7852 3.977244 CGCACGGGCCTTTTTGCT 61.977 61.111 2.82 0.00 36.38 3.91
2702 7853 2.409241 TAACGCACGGGCCTTTTTGC 62.409 55.000 2.82 5.50 36.38 3.68
2703 7854 0.242555 ATAACGCACGGGCCTTTTTG 59.757 50.000 2.82 0.00 36.38 2.44
2704 7855 1.741145 CTATAACGCACGGGCCTTTTT 59.259 47.619 2.82 0.00 36.38 1.94
2705 7856 1.065998 TCTATAACGCACGGGCCTTTT 60.066 47.619 2.82 0.00 36.38 2.27
2706 7857 0.538118 TCTATAACGCACGGGCCTTT 59.462 50.000 2.82 0.00 36.38 3.11
2707 7858 0.538118 TTCTATAACGCACGGGCCTT 59.462 50.000 2.82 0.28 36.38 4.35
2708 7859 0.179092 GTTCTATAACGCACGGGCCT 60.179 55.000 2.82 0.00 36.38 5.19
2709 7860 1.156034 GGTTCTATAACGCACGGGCC 61.156 60.000 2.82 0.00 36.39 5.80
2710 7861 0.179092 AGGTTCTATAACGCACGGGC 60.179 55.000 0.00 0.00 36.39 6.13
2711 7862 1.407979 AGAGGTTCTATAACGCACGGG 59.592 52.381 0.00 0.00 36.39 5.28
2712 7863 2.865343 AGAGGTTCTATAACGCACGG 57.135 50.000 0.00 0.00 36.39 4.94
2713 7864 4.525686 GTCTAGAGGTTCTATAACGCACG 58.474 47.826 0.00 0.00 36.39 5.34
2714 7865 4.579753 AGGTCTAGAGGTTCTATAACGCAC 59.420 45.833 0.00 0.00 36.39 5.34
2715 7866 4.789807 AGGTCTAGAGGTTCTATAACGCA 58.210 43.478 0.00 0.00 36.39 5.24
2716 7867 5.771153 AAGGTCTAGAGGTTCTATAACGC 57.229 43.478 0.00 0.00 36.39 4.84
2717 7868 7.571080 AGAAAGGTCTAGAGGTTCTATAACG 57.429 40.000 9.66 0.00 32.04 3.18
2718 7869 9.192642 AGAAGAAAGGTCTAGAGGTTCTATAAC 57.807 37.037 11.15 6.00 32.16 1.89
2719 7870 9.411189 GAGAAGAAAGGTCTAGAGGTTCTATAA 57.589 37.037 11.15 0.00 32.16 0.98
2720 7871 8.000127 GGAGAAGAAAGGTCTAGAGGTTCTATA 59.000 40.741 11.15 0.00 32.16 1.31
2721 7872 6.837048 GGAGAAGAAAGGTCTAGAGGTTCTAT 59.163 42.308 11.15 5.61 32.16 1.98
2722 7873 6.011451 AGGAGAAGAAAGGTCTAGAGGTTCTA 60.011 42.308 11.15 0.00 32.16 2.10
2723 7874 5.020795 GGAGAAGAAAGGTCTAGAGGTTCT 58.979 45.833 0.00 0.00 32.16 3.01
2724 7875 5.020795 AGGAGAAGAAAGGTCTAGAGGTTC 58.979 45.833 0.00 0.00 32.16 3.62
2725 7876 5.018374 AGGAGAAGAAAGGTCTAGAGGTT 57.982 43.478 0.00 0.00 32.16 3.50
2726 7877 4.293901 AGAGGAGAAGAAAGGTCTAGAGGT 59.706 45.833 0.00 0.00 32.16 3.85
2727 7878 4.867086 AGAGGAGAAGAAAGGTCTAGAGG 58.133 47.826 0.00 0.00 32.16 3.69
2728 7879 4.887655 GGAGAGGAGAAGAAAGGTCTAGAG 59.112 50.000 0.00 0.00 32.16 2.43
2729 7880 4.292571 TGGAGAGGAGAAGAAAGGTCTAGA 59.707 45.833 0.00 0.00 32.16 2.43
2730 7881 4.605183 TGGAGAGGAGAAGAAAGGTCTAG 58.395 47.826 0.00 0.00 32.16 2.43
2731 7882 4.044825 ACTGGAGAGGAGAAGAAAGGTCTA 59.955 45.833 0.00 0.00 32.16 2.59
2732 7883 3.181412 ACTGGAGAGGAGAAGAAAGGTCT 60.181 47.826 0.00 0.00 34.72 3.85
2733 7884 3.056179 CACTGGAGAGGAGAAGAAAGGTC 60.056 52.174 0.00 0.00 0.00 3.85
2734 7885 2.903135 CACTGGAGAGGAGAAGAAAGGT 59.097 50.000 0.00 0.00 0.00 3.50
2735 7886 2.354604 GCACTGGAGAGGAGAAGAAAGG 60.355 54.545 0.00 0.00 0.00 3.11
2736 7887 2.566724 AGCACTGGAGAGGAGAAGAAAG 59.433 50.000 0.00 0.00 0.00 2.62
2737 7888 2.614259 AGCACTGGAGAGGAGAAGAAA 58.386 47.619 0.00 0.00 0.00 2.52
2738 7889 2.317371 AGCACTGGAGAGGAGAAGAA 57.683 50.000 0.00 0.00 0.00 2.52
2739 7890 2.310349 AGTAGCACTGGAGAGGAGAAGA 59.690 50.000 0.00 0.00 0.00 2.87
2740 7891 2.426738 CAGTAGCACTGGAGAGGAGAAG 59.573 54.545 8.03 0.00 42.35 2.85
2741 7892 2.451490 CAGTAGCACTGGAGAGGAGAA 58.549 52.381 8.03 0.00 42.35 2.87
2742 7893 2.136298 CAGTAGCACTGGAGAGGAGA 57.864 55.000 8.03 0.00 42.35 3.71
2752 7903 0.034380 TCGCCTCCTACAGTAGCACT 60.034 55.000 1.50 0.00 0.00 4.40
2753 7904 1.033574 ATCGCCTCCTACAGTAGCAC 58.966 55.000 1.50 0.00 0.00 4.40
2754 7905 2.651382 TATCGCCTCCTACAGTAGCA 57.349 50.000 1.50 0.00 0.00 3.49
2755 7906 2.229302 CCTTATCGCCTCCTACAGTAGC 59.771 54.545 1.50 0.00 0.00 3.58
2756 7907 2.820787 CCCTTATCGCCTCCTACAGTAG 59.179 54.545 0.00 0.00 0.00 2.57
2757 7908 2.444388 TCCCTTATCGCCTCCTACAGTA 59.556 50.000 0.00 0.00 0.00 2.74
2758 7909 1.217183 TCCCTTATCGCCTCCTACAGT 59.783 52.381 0.00 0.00 0.00 3.55
2759 7910 1.889829 CTCCCTTATCGCCTCCTACAG 59.110 57.143 0.00 0.00 0.00 2.74
2760 7911 1.480683 CCTCCCTTATCGCCTCCTACA 60.481 57.143 0.00 0.00 0.00 2.74
2761 7912 1.258676 CCTCCCTTATCGCCTCCTAC 58.741 60.000 0.00 0.00 0.00 3.18
2762 7913 0.542232 GCCTCCCTTATCGCCTCCTA 60.542 60.000 0.00 0.00 0.00 2.94
2763 7914 1.839296 GCCTCCCTTATCGCCTCCT 60.839 63.158 0.00 0.00 0.00 3.69
2764 7915 2.744377 GCCTCCCTTATCGCCTCC 59.256 66.667 0.00 0.00 0.00 4.30
2765 7916 1.745320 TTCGCCTCCCTTATCGCCTC 61.745 60.000 0.00 0.00 0.00 4.70
2766 7917 1.335132 TTTCGCCTCCCTTATCGCCT 61.335 55.000 0.00 0.00 0.00 5.52
2767 7918 0.880718 CTTTCGCCTCCCTTATCGCC 60.881 60.000 0.00 0.00 0.00 5.54
2768 7919 0.880718 CCTTTCGCCTCCCTTATCGC 60.881 60.000 0.00 0.00 0.00 4.58
2769 7920 0.750850 TCCTTTCGCCTCCCTTATCG 59.249 55.000 0.00 0.00 0.00 2.92
2770 7921 1.070914 CCTCCTTTCGCCTCCCTTATC 59.929 57.143 0.00 0.00 0.00 1.75
2771 7922 1.132500 CCTCCTTTCGCCTCCCTTAT 58.868 55.000 0.00 0.00 0.00 1.73
2772 7923 0.981277 CCCTCCTTTCGCCTCCCTTA 60.981 60.000 0.00 0.00 0.00 2.69
2773 7924 2.301738 CCCTCCTTTCGCCTCCCTT 61.302 63.158 0.00 0.00 0.00 3.95
2774 7925 2.689034 CCCTCCTTTCGCCTCCCT 60.689 66.667 0.00 0.00 0.00 4.20
2775 7926 4.491409 GCCCTCCTTTCGCCTCCC 62.491 72.222 0.00 0.00 0.00 4.30
2776 7927 4.840005 CGCCCTCCTTTCGCCTCC 62.840 72.222 0.00 0.00 0.00 4.30
2777 7928 3.771160 TCGCCCTCCTTTCGCCTC 61.771 66.667 0.00 0.00 0.00 4.70
2778 7929 4.083862 GTCGCCCTCCTTTCGCCT 62.084 66.667 0.00 0.00 0.00 5.52
2781 7932 4.814294 CCGGTCGCCCTCCTTTCG 62.814 72.222 0.00 0.00 0.00 3.46
2800 7951 4.477975 CTCACCGACCGGAGCGAC 62.478 72.222 19.96 1.11 38.96 5.19
2846 7997 2.770048 ATCTCCAAGGCCCCGAGG 60.770 66.667 0.00 0.00 0.00 4.63
2847 7998 2.507944 CATCTCCAAGGCCCCGAG 59.492 66.667 0.00 1.41 0.00 4.63
2848 7999 3.797353 GCATCTCCAAGGCCCCGA 61.797 66.667 0.00 0.00 0.00 5.14
2849 8000 4.113815 TGCATCTCCAAGGCCCCG 62.114 66.667 0.00 0.00 0.00 5.73
2850 8001 2.123982 CTGCATCTCCAAGGCCCC 60.124 66.667 0.00 0.00 0.00 5.80
2851 8002 2.832201 GCTGCATCTCCAAGGCCC 60.832 66.667 0.00 0.00 0.00 5.80
2852 8003 3.207669 CGCTGCATCTCCAAGGCC 61.208 66.667 0.00 0.00 0.00 5.19
2853 8004 3.207669 CCGCTGCATCTCCAAGGC 61.208 66.667 0.00 0.00 0.00 4.35
2854 8005 1.817099 GTCCGCTGCATCTCCAAGG 60.817 63.158 0.00 0.00 0.00 3.61
2855 8006 1.817099 GGTCCGCTGCATCTCCAAG 60.817 63.158 0.00 0.00 0.00 3.61
2856 8007 2.268920 GGTCCGCTGCATCTCCAA 59.731 61.111 0.00 0.00 0.00 3.53
2857 8008 3.002583 TGGTCCGCTGCATCTCCA 61.003 61.111 0.00 0.00 0.00 3.86
2858 8009 2.512515 GTGGTCCGCTGCATCTCC 60.513 66.667 0.00 0.00 0.00 3.71
2859 8010 2.887568 CGTGGTCCGCTGCATCTC 60.888 66.667 0.00 0.00 0.00 2.75
2860 8011 4.457496 CCGTGGTCCGCTGCATCT 62.457 66.667 0.00 0.00 34.38 2.90
2861 8012 4.760047 ACCGTGGTCCGCTGCATC 62.760 66.667 0.00 0.00 34.38 3.91
2862 8013 4.329545 AACCGTGGTCCGCTGCAT 62.330 61.111 0.00 0.00 34.38 3.96
2863 8014 4.980805 GAACCGTGGTCCGCTGCA 62.981 66.667 0.00 0.00 34.38 4.41
2864 8015 4.681978 AGAACCGTGGTCCGCTGC 62.682 66.667 0.00 0.00 34.38 5.25
2865 8016 2.432628 GAGAACCGTGGTCCGCTG 60.433 66.667 0.00 0.00 34.38 5.18
2866 8017 3.692406 GGAGAACCGTGGTCCGCT 61.692 66.667 0.00 0.00 34.38 5.52
2867 8018 4.754667 GGGAGAACCGTGGTCCGC 62.755 72.222 0.00 0.00 36.97 5.54
2868 8019 4.078516 GGGGAGAACCGTGGTCCG 62.079 72.222 0.00 0.00 41.60 4.79
2869 8020 3.714001 GGGGGAGAACCGTGGTCC 61.714 72.222 0.00 0.00 41.60 4.46
2870 8021 4.078516 CGGGGGAGAACCGTGGTC 62.079 72.222 0.00 0.00 46.03 4.02
2889 8040 1.215647 GAGACAGTACAGCCACCGG 59.784 63.158 0.00 0.00 0.00 5.28
2890 8041 0.109086 CAGAGACAGTACAGCCACCG 60.109 60.000 0.00 0.00 0.00 4.94
2891 8042 0.390472 GCAGAGACAGTACAGCCACC 60.390 60.000 0.00 0.00 0.00 4.61
2892 8043 0.734253 CGCAGAGACAGTACAGCCAC 60.734 60.000 0.00 0.00 0.00 5.01
2893 8044 1.586541 CGCAGAGACAGTACAGCCA 59.413 57.895 0.00 0.00 0.00 4.75
2894 8045 1.807573 GCGCAGAGACAGTACAGCC 60.808 63.158 0.30 0.00 0.00 4.85
2895 8046 0.452184 TAGCGCAGAGACAGTACAGC 59.548 55.000 11.47 0.00 0.00 4.40
2896 8047 2.098280 ACATAGCGCAGAGACAGTACAG 59.902 50.000 11.47 0.00 0.00 2.74
2897 8048 2.092323 ACATAGCGCAGAGACAGTACA 58.908 47.619 11.47 0.00 0.00 2.90
2898 8049 2.853731 ACATAGCGCAGAGACAGTAC 57.146 50.000 11.47 0.00 0.00 2.73
2899 8050 2.879026 CCTACATAGCGCAGAGACAGTA 59.121 50.000 11.47 1.50 0.00 2.74
2900 8051 1.678627 CCTACATAGCGCAGAGACAGT 59.321 52.381 11.47 0.21 0.00 3.55
2901 8052 1.601663 GCCTACATAGCGCAGAGACAG 60.602 57.143 11.47 0.00 0.00 3.51
2902 8053 0.385751 GCCTACATAGCGCAGAGACA 59.614 55.000 11.47 0.00 0.00 3.41
2903 8054 0.671251 AGCCTACATAGCGCAGAGAC 59.329 55.000 11.47 0.00 34.64 3.36
2904 8055 2.155279 CTAGCCTACATAGCGCAGAGA 58.845 52.381 11.47 0.00 34.64 3.10
2905 8056 1.883275 ACTAGCCTACATAGCGCAGAG 59.117 52.381 11.47 0.00 34.64 3.35
2906 8057 1.982660 ACTAGCCTACATAGCGCAGA 58.017 50.000 11.47 0.00 34.64 4.26
2907 8058 2.294791 AGAACTAGCCTACATAGCGCAG 59.705 50.000 11.47 0.64 34.64 5.18
2908 8059 2.293677 GAGAACTAGCCTACATAGCGCA 59.706 50.000 11.47 0.00 34.64 6.09
2909 8060 2.351932 GGAGAACTAGCCTACATAGCGC 60.352 54.545 0.00 0.00 34.64 5.92
2910 8061 2.095668 CGGAGAACTAGCCTACATAGCG 60.096 54.545 0.00 0.00 34.64 4.26
2911 8062 2.229302 CCGGAGAACTAGCCTACATAGC 59.771 54.545 0.00 0.00 0.00 2.97
2912 8063 2.229302 GCCGGAGAACTAGCCTACATAG 59.771 54.545 5.05 0.00 0.00 2.23
2913 8064 2.236766 GCCGGAGAACTAGCCTACATA 58.763 52.381 5.05 0.00 0.00 2.29
2914 8065 1.041437 GCCGGAGAACTAGCCTACAT 58.959 55.000 5.05 0.00 0.00 2.29
2915 8066 1.041447 GGCCGGAGAACTAGCCTACA 61.041 60.000 5.05 0.00 42.34 2.74
2916 8067 1.041447 TGGCCGGAGAACTAGCCTAC 61.041 60.000 5.05 0.00 45.94 3.18
2917 8068 0.324923 TTGGCCGGAGAACTAGCCTA 60.325 55.000 5.05 0.00 45.94 3.93
2918 8069 1.612442 TTGGCCGGAGAACTAGCCT 60.612 57.895 5.05 0.00 45.94 4.58
2919 8070 1.153349 CTTGGCCGGAGAACTAGCC 60.153 63.158 5.05 0.00 45.96 3.93
2920 8071 0.036294 AACTTGGCCGGAGAACTAGC 60.036 55.000 5.05 0.00 0.00 3.42
2921 8072 1.736032 CGAACTTGGCCGGAGAACTAG 60.736 57.143 5.05 0.41 0.00 2.57
2922 8073 0.245539 CGAACTTGGCCGGAGAACTA 59.754 55.000 5.05 0.00 0.00 2.24
2923 8074 1.004918 CGAACTTGGCCGGAGAACT 60.005 57.895 5.05 0.00 0.00 3.01
2924 8075 2.677979 GCGAACTTGGCCGGAGAAC 61.678 63.158 5.05 5.36 0.00 3.01
2925 8076 1.537814 TAGCGAACTTGGCCGGAGAA 61.538 55.000 5.05 0.00 0.00 2.87
2926 8077 1.327690 ATAGCGAACTTGGCCGGAGA 61.328 55.000 5.05 0.00 0.00 3.71
2927 8078 0.876342 GATAGCGAACTTGGCCGGAG 60.876 60.000 5.05 0.43 0.00 4.63
2928 8079 1.143183 GATAGCGAACTTGGCCGGA 59.857 57.895 5.05 0.00 0.00 5.14
2929 8080 1.153449 TGATAGCGAACTTGGCCGG 60.153 57.895 0.00 0.00 0.00 6.13
2930 8081 1.752501 CGTGATAGCGAACTTGGCCG 61.753 60.000 0.00 0.00 0.00 6.13
2931 8082 1.429148 CCGTGATAGCGAACTTGGCC 61.429 60.000 0.00 0.00 0.00 5.36
2932 8083 2.006772 CCGTGATAGCGAACTTGGC 58.993 57.895 0.00 0.00 0.00 4.52
2933 8084 0.739462 TGCCGTGATAGCGAACTTGG 60.739 55.000 0.00 0.00 0.00 3.61
2934 8085 0.370273 GTGCCGTGATAGCGAACTTG 59.630 55.000 0.00 0.00 0.00 3.16
2935 8086 0.739813 GGTGCCGTGATAGCGAACTT 60.740 55.000 0.00 0.00 0.00 2.66
2936 8087 1.153628 GGTGCCGTGATAGCGAACT 60.154 57.895 0.00 0.00 0.00 3.01
2937 8088 2.514013 CGGTGCCGTGATAGCGAAC 61.514 63.158 1.93 0.00 39.92 3.95
2938 8089 2.202690 CGGTGCCGTGATAGCGAA 60.203 61.111 1.93 0.00 39.92 4.70
2939 8090 4.201679 CCGGTGCCGTGATAGCGA 62.202 66.667 9.90 0.00 39.92 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.