Multiple sequence alignment - TraesCS7A01G021000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G021000 chr7A 100.000 3386 0 0 1 3386 8547646 8551031 0.000000e+00 6253.0
1 TraesCS7A01G021000 chr7A 90.049 1025 79 6 989 2003 8584174 8583163 0.000000e+00 1306.0
2 TraesCS7A01G021000 chr7A 80.363 1431 208 41 1046 2442 26573645 26572254 0.000000e+00 1018.0
3 TraesCS7A01G021000 chr7A 100.000 29 0 0 878 906 8542910 8542938 2.000000e-03 54.7
4 TraesCS7A01G021000 chr7D 90.130 1773 139 18 924 2675 7536451 7534694 0.000000e+00 2272.0
5 TraesCS7A01G021000 chr7D 87.296 551 48 12 2141 2676 7530148 7530691 8.030000e-171 610.0
6 TraesCS7A01G021000 chr7D 81.210 314 33 12 3093 3384 7533428 7533119 2.630000e-56 230.0
7 TraesCS7A01G021000 chr4A 91.524 1581 102 13 982 2539 732004235 732005806 0.000000e+00 2148.0
8 TraesCS7A01G021000 chr4A 80.478 1424 202 43 1046 2442 709998741 709997367 0.000000e+00 1020.0
9 TraesCS7A01G021000 chr1D 95.338 858 34 2 1 853 486367027 486366171 0.000000e+00 1358.0
10 TraesCS7A01G021000 chr1D 95.111 859 34 3 1 854 75843663 75844518 0.000000e+00 1347.0
11 TraesCS7A01G021000 chr2B 95.327 856 34 2 1 851 564818458 564819312 0.000000e+00 1354.0
12 TraesCS7A01G021000 chr2B 94.792 864 38 3 1 859 333061177 333062038 0.000000e+00 1339.0
13 TraesCS7A01G021000 chr6D 95.899 829 28 2 1 824 407821702 407820875 0.000000e+00 1338.0
14 TraesCS7A01G021000 chr4B 95.899 829 28 2 1 824 636702168 636702995 0.000000e+00 1338.0
15 TraesCS7A01G021000 chr4B 94.749 857 37 4 1 852 37151462 37150609 0.000000e+00 1327.0
16 TraesCS7A01G021000 chr1B 94.854 855 37 3 3 852 688279544 688278692 0.000000e+00 1328.0
17 TraesCS7A01G021000 chr1B 79.021 143 25 5 2685 2825 305439740 305439879 3.600000e-15 93.5
18 TraesCS7A01G021000 chr5B 94.737 855 39 2 1 850 472275508 472276361 0.000000e+00 1325.0
19 TraesCS7A01G021000 chr3A 72.652 724 159 30 1675 2392 693194285 693193595 1.590000e-48 204.0
20 TraesCS7A01G021000 chr3B 77.492 311 54 11 2084 2392 739512054 739511758 4.490000e-39 172.0
21 TraesCS7A01G021000 chr5D 94.118 51 3 0 2775 2825 551414348 551414398 1.010000e-10 78.7
22 TraesCS7A01G021000 chr4D 94.737 38 1 1 2868 2905 11562925 11562961 1.310000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G021000 chr7A 8547646 8551031 3385 False 6253 6253 100.000 1 3386 1 chr7A.!!$F2 3385
1 TraesCS7A01G021000 chr7A 8583163 8584174 1011 True 1306 1306 90.049 989 2003 1 chr7A.!!$R1 1014
2 TraesCS7A01G021000 chr7A 26572254 26573645 1391 True 1018 1018 80.363 1046 2442 1 chr7A.!!$R2 1396
3 TraesCS7A01G021000 chr7D 7533119 7536451 3332 True 1251 2272 85.670 924 3384 2 chr7D.!!$R1 2460
4 TraesCS7A01G021000 chr7D 7530148 7530691 543 False 610 610 87.296 2141 2676 1 chr7D.!!$F1 535
5 TraesCS7A01G021000 chr4A 732004235 732005806 1571 False 2148 2148 91.524 982 2539 1 chr4A.!!$F1 1557
6 TraesCS7A01G021000 chr4A 709997367 709998741 1374 True 1020 1020 80.478 1046 2442 1 chr4A.!!$R1 1396
7 TraesCS7A01G021000 chr1D 486366171 486367027 856 True 1358 1358 95.338 1 853 1 chr1D.!!$R1 852
8 TraesCS7A01G021000 chr1D 75843663 75844518 855 False 1347 1347 95.111 1 854 1 chr1D.!!$F1 853
9 TraesCS7A01G021000 chr2B 564818458 564819312 854 False 1354 1354 95.327 1 851 1 chr2B.!!$F2 850
10 TraesCS7A01G021000 chr2B 333061177 333062038 861 False 1339 1339 94.792 1 859 1 chr2B.!!$F1 858
11 TraesCS7A01G021000 chr6D 407820875 407821702 827 True 1338 1338 95.899 1 824 1 chr6D.!!$R1 823
12 TraesCS7A01G021000 chr4B 636702168 636702995 827 False 1338 1338 95.899 1 824 1 chr4B.!!$F1 823
13 TraesCS7A01G021000 chr4B 37150609 37151462 853 True 1327 1327 94.749 1 852 1 chr4B.!!$R1 851
14 TraesCS7A01G021000 chr1B 688278692 688279544 852 True 1328 1328 94.854 3 852 1 chr1B.!!$R1 849
15 TraesCS7A01G021000 chr5B 472275508 472276361 853 False 1325 1325 94.737 1 850 1 chr5B.!!$F1 849
16 TraesCS7A01G021000 chr3A 693193595 693194285 690 True 204 204 72.652 1675 2392 1 chr3A.!!$R1 717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
762 768 0.031616 TTGCCCCTGTTTTTCCACCT 60.032 50.0 0.00 0.00 0.00 4.0 F
904 910 0.037882 CACCTGATCAGTGTCGCTGT 60.038 55.0 21.11 7.29 45.23 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2046 2104 0.172578 ACTGCGCGTTGTAGCATAGA 59.827 50.0 8.43 0.0 42.95 1.98 R
2893 3599 0.028770 CGCGTGGAAAAGTTTCTGCA 59.971 50.0 0.00 0.0 37.35 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 2.921221 AGGGTGAAGATGGAAGGAGAA 58.079 47.619 0.00 0.00 0.00 2.87
106 107 5.698741 TGATGAAGGCAAGAGAGGAATTA 57.301 39.130 0.00 0.00 0.00 1.40
250 251 1.271656 CAAGCTCAAAGAGGCAAAGGG 59.728 52.381 0.00 0.00 0.00 3.95
370 371 1.104577 ATCGCGGAGAGGAAGAGGAC 61.105 60.000 6.13 0.00 0.00 3.85
479 480 0.182061 GAGATGCTTGATGGAGCCCA 59.818 55.000 0.00 0.00 42.01 5.36
651 652 7.755582 TGTAGTCATAAATTGTGAGATGTCG 57.244 36.000 0.00 0.00 0.00 4.35
712 718 3.133183 GTCAAACCCAACCCTTAAAGCAA 59.867 43.478 0.00 0.00 0.00 3.91
732 738 4.039852 GCAATTTAAGGGTTGGGTTTGAGA 59.960 41.667 0.00 0.00 0.00 3.27
758 764 2.039418 AGTCTTTGCCCCTGTTTTTCC 58.961 47.619 0.00 0.00 0.00 3.13
762 768 0.031616 TTGCCCCTGTTTTTCCACCT 60.032 50.000 0.00 0.00 0.00 4.00
772 778 6.403049 CCTGTTTTTCCACCTTTAAAAGTGT 58.597 36.000 14.34 0.00 0.00 3.55
782 788 7.039644 TCCACCTTTAAAAGTGTCAAAAACTGA 60.040 33.333 14.34 0.90 0.00 3.41
811 817 7.648039 TCTCAACCCTTAAAACTGCTTTAAA 57.352 32.000 0.00 0.00 38.67 1.52
813 819 7.558444 TCTCAACCCTTAAAACTGCTTTAAAGA 59.442 33.333 19.48 3.58 38.67 2.52
844 850 6.071278 GGGTTTGAGAGTTCTACTAGACATGT 60.071 42.308 0.00 0.00 0.00 3.21
859 865 8.184304 ACTAGACATGTTCTTAGGCTATTAGG 57.816 38.462 0.00 0.00 35.55 2.69
860 866 6.426646 AGACATGTTCTTAGGCTATTAGGG 57.573 41.667 0.00 0.00 0.00 3.53
861 867 4.974399 ACATGTTCTTAGGCTATTAGGGC 58.026 43.478 0.00 0.00 0.00 5.19
862 868 4.660771 ACATGTTCTTAGGCTATTAGGGCT 59.339 41.667 0.00 0.00 44.34 5.19
863 869 4.957684 TGTTCTTAGGCTATTAGGGCTC 57.042 45.455 0.00 0.00 42.20 4.70
864 870 4.295201 TGTTCTTAGGCTATTAGGGCTCA 58.705 43.478 0.00 0.00 42.20 4.26
865 871 4.719773 TGTTCTTAGGCTATTAGGGCTCAA 59.280 41.667 0.00 0.00 42.20 3.02
866 872 5.369699 TGTTCTTAGGCTATTAGGGCTCAAT 59.630 40.000 0.00 0.00 42.20 2.57
867 873 5.746990 TCTTAGGCTATTAGGGCTCAATC 57.253 43.478 0.00 0.00 42.20 2.67
868 874 4.220821 TCTTAGGCTATTAGGGCTCAATCG 59.779 45.833 0.00 0.00 42.20 3.34
869 875 1.625818 AGGCTATTAGGGCTCAATCGG 59.374 52.381 0.00 0.00 37.58 4.18
870 876 1.623811 GGCTATTAGGGCTCAATCGGA 59.376 52.381 0.00 0.00 0.00 4.55
871 877 2.237392 GGCTATTAGGGCTCAATCGGAT 59.763 50.000 0.00 0.00 0.00 4.18
872 878 3.307762 GGCTATTAGGGCTCAATCGGATT 60.308 47.826 0.00 0.00 0.00 3.01
873 879 3.686726 GCTATTAGGGCTCAATCGGATTG 59.313 47.826 21.85 21.85 41.57 2.67
874 880 2.638480 TTAGGGCTCAATCGGATTGG 57.362 50.000 25.86 18.48 40.61 3.16
875 881 0.108585 TAGGGCTCAATCGGATTGGC 59.891 55.000 25.86 24.84 40.61 4.52
876 882 1.152881 GGGCTCAATCGGATTGGCT 60.153 57.895 27.59 0.33 40.61 4.75
877 883 1.169034 GGGCTCAATCGGATTGGCTC 61.169 60.000 27.59 24.32 40.61 4.70
878 884 0.464373 GGCTCAATCGGATTGGCTCA 60.464 55.000 27.59 13.59 40.61 4.26
879 885 1.602311 GCTCAATCGGATTGGCTCAT 58.398 50.000 25.86 0.00 40.61 2.90
880 886 1.534595 GCTCAATCGGATTGGCTCATC 59.465 52.381 25.86 9.04 40.61 2.92
881 887 2.149578 CTCAATCGGATTGGCTCATCC 58.850 52.381 25.86 6.29 40.61 3.51
882 888 1.490069 TCAATCGGATTGGCTCATCCA 59.510 47.619 25.86 5.77 44.85 3.41
889 895 3.920817 TGGCTCATCCAACCACCT 58.079 55.556 0.00 0.00 43.21 4.00
890 896 1.379916 TGGCTCATCCAACCACCTG 59.620 57.895 0.00 0.00 43.21 4.00
891 897 1.133181 TGGCTCATCCAACCACCTGA 61.133 55.000 0.00 0.00 43.21 3.86
892 898 0.257039 GGCTCATCCAACCACCTGAT 59.743 55.000 0.00 0.00 34.01 2.90
893 899 1.673168 GCTCATCCAACCACCTGATC 58.327 55.000 0.00 0.00 0.00 2.92
894 900 1.065199 GCTCATCCAACCACCTGATCA 60.065 52.381 0.00 0.00 0.00 2.92
895 901 2.915349 CTCATCCAACCACCTGATCAG 58.085 52.381 16.24 16.24 0.00 2.90
896 902 2.238144 CTCATCCAACCACCTGATCAGT 59.762 50.000 21.11 6.95 0.00 3.41
897 903 2.026915 TCATCCAACCACCTGATCAGTG 60.027 50.000 21.11 17.39 0.00 3.66
898 904 1.434188 TCCAACCACCTGATCAGTGT 58.566 50.000 21.11 15.13 0.00 3.55
899 905 1.347707 TCCAACCACCTGATCAGTGTC 59.652 52.381 21.11 0.00 0.00 3.67
900 906 1.432514 CAACCACCTGATCAGTGTCG 58.567 55.000 21.11 13.20 0.00 4.35
901 907 0.320771 AACCACCTGATCAGTGTCGC 60.321 55.000 21.11 0.00 0.00 5.19
902 908 1.188219 ACCACCTGATCAGTGTCGCT 61.188 55.000 21.11 1.68 0.00 4.93
903 909 0.738762 CCACCTGATCAGTGTCGCTG 60.739 60.000 21.11 7.09 46.34 5.18
904 910 0.037882 CACCTGATCAGTGTCGCTGT 60.038 55.000 21.11 7.29 45.23 4.40
905 911 0.244994 ACCTGATCAGTGTCGCTGTC 59.755 55.000 21.11 10.25 45.23 3.51
906 912 0.799917 CCTGATCAGTGTCGCTGTCG 60.800 60.000 21.11 0.00 45.23 4.35
907 913 0.169009 CTGATCAGTGTCGCTGTCGA 59.831 55.000 14.95 0.00 45.23 4.20
915 921 3.270000 TCGCTGTCGACCGATTGA 58.730 55.556 14.12 3.12 40.21 2.57
916 922 1.807226 TCGCTGTCGACCGATTGAT 59.193 52.632 14.12 0.00 40.21 2.57
917 923 0.248498 TCGCTGTCGACCGATTGATC 60.248 55.000 14.12 0.00 40.21 2.92
918 924 0.525455 CGCTGTCGACCGATTGATCA 60.525 55.000 14.12 0.00 38.10 2.92
919 925 1.203928 GCTGTCGACCGATTGATCAG 58.796 55.000 14.12 1.07 0.00 2.90
920 926 1.469940 GCTGTCGACCGATTGATCAGT 60.470 52.381 14.12 0.00 0.00 3.41
921 927 2.188524 CTGTCGACCGATTGATCAGTG 58.811 52.381 14.12 0.00 0.00 3.66
922 928 1.544246 TGTCGACCGATTGATCAGTGT 59.456 47.619 14.12 0.00 0.00 3.55
923 929 2.186076 GTCGACCGATTGATCAGTGTC 58.814 52.381 3.51 0.00 0.00 3.67
924 930 1.816224 TCGACCGATTGATCAGTGTCA 59.184 47.619 0.00 0.00 0.00 3.58
925 931 2.230266 TCGACCGATTGATCAGTGTCAA 59.770 45.455 0.00 9.56 41.88 3.18
926 932 2.345641 CGACCGATTGATCAGTGTCAAC 59.654 50.000 0.00 4.99 40.60 3.18
927 933 2.673368 GACCGATTGATCAGTGTCAACC 59.327 50.000 0.00 1.40 40.60 3.77
928 934 2.009774 CCGATTGATCAGTGTCAACCC 58.990 52.381 0.00 5.51 40.60 4.11
929 935 2.355108 CCGATTGATCAGTGTCAACCCT 60.355 50.000 0.00 0.00 40.60 4.34
930 936 3.338249 CGATTGATCAGTGTCAACCCTT 58.662 45.455 0.00 0.00 40.60 3.95
931 937 3.372206 CGATTGATCAGTGTCAACCCTTC 59.628 47.826 0.00 4.50 40.60 3.46
932 938 2.859165 TGATCAGTGTCAACCCTTCC 57.141 50.000 0.00 0.00 0.00 3.46
938 944 1.343465 AGTGTCAACCCTTCCTACGTG 59.657 52.381 0.00 0.00 0.00 4.49
949 955 4.442706 CCTTCCTACGTGCATGTTTATCT 58.557 43.478 18.34 0.00 0.00 1.98
956 962 2.347150 CGTGCATGTTTATCTGTACGCA 59.653 45.455 0.00 0.00 42.72 5.24
958 964 2.675844 TGCATGTTTATCTGTACGCACC 59.324 45.455 0.00 0.00 0.00 5.01
964 970 2.647529 TATCTGTACGCACCTGTGTG 57.352 50.000 9.18 9.18 45.65 3.82
974 980 3.585020 CCTGTGTGCGTTGCAGCA 61.585 61.111 0.24 0.00 45.96 4.41
980 986 2.859580 TGCGTTGCAGCACATACG 59.140 55.556 12.81 12.81 42.92 3.06
981 987 1.958715 TGCGTTGCAGCACATACGT 60.959 52.632 17.21 0.00 42.92 3.57
982 988 0.667792 TGCGTTGCAGCACATACGTA 60.668 50.000 17.21 11.51 42.92 3.57
983 989 0.247145 GCGTTGCAGCACATACGTAC 60.247 55.000 17.21 1.00 36.11 3.67
984 990 1.346365 CGTTGCAGCACATACGTACT 58.654 50.000 9.53 0.00 32.05 2.73
985 991 2.521996 CGTTGCAGCACATACGTACTA 58.478 47.619 9.53 0.00 32.05 1.82
1035 1041 3.221771 TGCAACAAGAAGCACTATTGGT 58.778 40.909 0.00 0.00 35.51 3.67
1039 1045 5.642063 GCAACAAGAAGCACTATTGGTAGTA 59.358 40.000 0.00 0.00 39.12 1.82
1044 1050 6.764308 AGAAGCACTATTGGTAGTACGTTA 57.236 37.500 0.00 0.00 39.12 3.18
1089 1095 1.627834 CTTGTCCTCCAGCTTCTCCTT 59.372 52.381 0.00 0.00 0.00 3.36
1133 1157 4.477975 GAGGGCGACGACCGTCAG 62.478 72.222 15.58 14.23 46.37 3.51
1426 1465 4.920112 CCAACGACACCACCGGCA 62.920 66.667 0.00 0.00 0.00 5.69
1427 1466 3.645975 CAACGACACCACCGGCAC 61.646 66.667 0.00 0.00 0.00 5.01
1476 1530 1.516386 CGATCGCTGCAGGTACGTT 60.516 57.895 17.12 5.67 0.00 3.99
1728 1782 2.359602 TCCGACTCCGAGAGCGTT 60.360 61.111 1.33 0.00 38.22 4.84
1732 1786 1.286260 GACTCCGAGAGCGTTGTGT 59.714 57.895 1.33 0.00 35.23 3.72
1734 1788 0.956633 ACTCCGAGAGCGTTGTGTTA 59.043 50.000 1.33 0.00 35.23 2.41
1832 1886 3.677190 CGTCTACTACGTCAAGCTCAT 57.323 47.619 0.00 0.00 46.72 2.90
1840 1894 3.724508 ACGTCAAGCTCATCTCCATAG 57.275 47.619 0.00 0.00 0.00 2.23
1861 1915 2.876368 GATTGACGGTCAGGCCCTGG 62.876 65.000 11.68 0.00 31.51 4.45
2006 2064 3.918220 GAGCAAGATCACGGCGCG 61.918 66.667 6.90 0.00 0.00 6.86
2007 2065 4.435436 AGCAAGATCACGGCGCGA 62.435 61.111 12.10 2.24 0.00 5.87
2046 2104 4.778143 GCCGGTGGCCTGTTCGAT 62.778 66.667 3.32 0.00 44.06 3.59
2112 2170 2.074230 TTACGCTGGTGTTCGACGGT 62.074 55.000 0.00 0.00 0.00 4.83
2119 2177 1.606885 GGTGTTCGACGGTGGGGATA 61.607 60.000 0.00 0.00 0.00 2.59
2345 2407 2.217038 AGGTGGTGTCGCTCATGGT 61.217 57.895 0.00 0.00 0.00 3.55
2422 2496 3.672241 CGATCGTGTGTACTGTTCCATCA 60.672 47.826 7.03 0.00 0.00 3.07
2517 2611 4.640201 TGCTTGTACCCAGATTAAAGATGC 59.360 41.667 0.00 0.00 0.00 3.91
2556 2650 6.009115 TCCCTTTTTCTCTAAAATGTTCGC 57.991 37.500 0.00 0.00 35.29 4.70
2557 2651 5.533154 TCCCTTTTTCTCTAAAATGTTCGCA 59.467 36.000 0.00 0.00 35.29 5.10
2561 2655 8.427774 CCTTTTTCTCTAAAATGTTCGCAAATC 58.572 33.333 0.00 0.00 35.29 2.17
2575 2669 5.203358 TCGCAAATCGAACAATGTTCTAG 57.797 39.130 21.89 9.23 45.36 2.43
2581 2676 8.578769 GCAAATCGAACAATGTTCTAGAATTTC 58.421 33.333 21.89 5.44 0.00 2.17
2585 2680 9.831737 ATCGAACAATGTTCTAGAATTTCAAAG 57.168 29.630 21.89 3.97 0.00 2.77
2593 2688 8.601845 TGTTCTAGAATTTCAAAGATGTTCGA 57.398 30.769 8.75 0.00 0.00 3.71
2595 2690 9.319223 GTTCTAGAATTTCAAAGATGTTCGAAC 57.681 33.333 21.42 21.42 0.00 3.95
2596 2691 8.833231 TCTAGAATTTCAAAGATGTTCGAACT 57.167 30.769 27.32 13.99 0.00 3.01
2684 2829 7.810766 TCATCAATTTTAAAAAGGACGATGC 57.189 32.000 4.44 0.00 0.00 3.91
2685 2830 7.601856 TCATCAATTTTAAAAAGGACGATGCT 58.398 30.769 4.44 0.00 0.00 3.79
2686 2831 8.735315 TCATCAATTTTAAAAAGGACGATGCTA 58.265 29.630 4.44 0.00 0.00 3.49
2688 2833 8.909708 TCAATTTTAAAAAGGACGATGCTATG 57.090 30.769 4.44 0.00 0.00 2.23
2689 2834 7.487829 TCAATTTTAAAAAGGACGATGCTATGC 59.512 33.333 4.44 0.00 0.00 3.14
2690 2835 5.888691 TTTAAAAAGGACGATGCTATGCA 57.111 34.783 0.00 0.00 44.86 3.96
2699 2844 3.860605 TGCTATGCATCGGCCGGT 61.861 61.111 27.83 18.03 40.13 5.28
2700 2845 3.349006 GCTATGCATCGGCCGGTG 61.349 66.667 34.08 34.08 40.13 4.94
2701 2846 2.421314 CTATGCATCGGCCGGTGA 59.579 61.111 41.49 25.70 40.13 4.02
2702 2847 1.227527 CTATGCATCGGCCGGTGAA 60.228 57.895 41.49 33.85 40.13 3.18
2703 2848 0.603707 CTATGCATCGGCCGGTGAAT 60.604 55.000 41.49 37.50 40.13 2.57
2708 2853 2.147958 GCATCGGCCGGTGAATAATAA 58.852 47.619 41.49 10.88 0.00 1.40
2709 2854 2.159627 GCATCGGCCGGTGAATAATAAG 59.840 50.000 41.49 12.74 0.00 1.73
2714 2859 4.573201 TCGGCCGGTGAATAATAAGAAAAG 59.427 41.667 27.83 0.00 0.00 2.27
2717 2862 6.565999 CGGCCGGTGAATAATAAGAAAAGATC 60.566 42.308 20.10 0.00 0.00 2.75
2718 2863 6.486993 GGCCGGTGAATAATAAGAAAAGATCT 59.513 38.462 1.90 0.00 41.32 2.75
2719 2864 7.355778 GCCGGTGAATAATAAGAAAAGATCTG 58.644 38.462 1.90 0.00 38.79 2.90
2723 2868 6.853362 GTGAATAATAAGAAAAGATCTGCCGC 59.147 38.462 0.00 0.00 38.79 6.53
2726 2871 2.206576 AAGAAAAGATCTGCCGCCTT 57.793 45.000 0.00 0.00 38.79 4.35
2727 2872 1.457346 AGAAAAGATCTGCCGCCTTG 58.543 50.000 0.00 0.00 36.88 3.61
2728 2873 0.179153 GAAAAGATCTGCCGCCTTGC 60.179 55.000 0.00 0.00 0.00 4.01
2729 2874 0.610232 AAAAGATCTGCCGCCTTGCT 60.610 50.000 0.00 0.00 0.00 3.91
2730 2875 1.310933 AAAGATCTGCCGCCTTGCTG 61.311 55.000 0.00 0.00 0.00 4.41
2732 2877 2.437359 ATCTGCCGCCTTGCTGAC 60.437 61.111 0.00 0.00 41.18 3.51
2737 2882 3.052082 CCGCCTTGCTGACCAGTG 61.052 66.667 0.00 0.00 0.00 3.66
2738 2883 3.052082 CGCCTTGCTGACCAGTGG 61.052 66.667 7.91 7.91 0.00 4.00
2744 2889 1.808945 CTTGCTGACCAGTGGATGAAC 59.191 52.381 18.40 1.49 0.00 3.18
2745 2890 0.764271 TGCTGACCAGTGGATGAACA 59.236 50.000 18.40 4.34 0.00 3.18
2747 2892 1.432514 CTGACCAGTGGATGAACACG 58.567 55.000 18.40 0.00 45.80 4.49
2748 2893 0.756294 TGACCAGTGGATGAACACGT 59.244 50.000 18.40 0.00 45.80 4.49
2749 2894 1.140052 TGACCAGTGGATGAACACGTT 59.860 47.619 18.40 0.00 45.80 3.99
2751 2896 2.993899 GACCAGTGGATGAACACGTTAG 59.006 50.000 18.40 0.00 45.80 2.34
2752 2897 2.367567 ACCAGTGGATGAACACGTTAGT 59.632 45.455 18.40 0.00 45.80 2.24
2762 2907 3.299050 CACGTTAGTGGCTGTCCAA 57.701 52.632 0.00 0.00 45.53 3.53
2765 2910 1.338769 ACGTTAGTGGCTGTCCAATCC 60.339 52.381 0.00 0.00 45.53 3.01
2767 2912 2.680805 CGTTAGTGGCTGTCCAATCCAT 60.681 50.000 0.00 0.00 45.53 3.41
2768 2913 2.945668 GTTAGTGGCTGTCCAATCCATC 59.054 50.000 0.00 0.00 45.53 3.51
2769 2914 0.257039 AGTGGCTGTCCAATCCATCC 59.743 55.000 0.00 0.00 45.53 3.51
2770 2915 1.097547 GTGGCTGTCCAATCCATCCG 61.098 60.000 0.00 0.00 45.53 4.18
2772 2917 1.097547 GGCTGTCCAATCCATCCGTG 61.098 60.000 0.00 0.00 0.00 4.94
2776 2921 3.198068 CTGTCCAATCCATCCGTGTAAG 58.802 50.000 0.00 0.00 0.00 2.34
2777 2922 1.940613 GTCCAATCCATCCGTGTAAGC 59.059 52.381 0.00 0.00 0.00 3.09
2778 2923 1.557371 TCCAATCCATCCGTGTAAGCA 59.443 47.619 0.00 0.00 0.00 3.91
2779 2924 1.942657 CCAATCCATCCGTGTAAGCAG 59.057 52.381 0.00 0.00 0.00 4.24
2780 2925 2.632377 CAATCCATCCGTGTAAGCAGT 58.368 47.619 0.00 0.00 0.00 4.40
2784 3490 1.066858 CCATCCGTGTAAGCAGTCACT 60.067 52.381 0.00 0.00 33.07 3.41
2785 3491 2.263077 CATCCGTGTAAGCAGTCACTC 58.737 52.381 0.00 0.00 33.07 3.51
2786 3492 0.601558 TCCGTGTAAGCAGTCACTCC 59.398 55.000 0.00 0.00 33.07 3.85
2794 3500 1.312815 AGCAGTCACTCCTTTGCAAC 58.687 50.000 0.00 0.00 38.97 4.17
2795 3501 1.024271 GCAGTCACTCCTTTGCAACA 58.976 50.000 0.00 0.00 36.59 3.33
2799 3505 3.003068 CAGTCACTCCTTTGCAACAAGAG 59.997 47.826 14.84 14.84 0.00 2.85
2801 3507 2.945008 TCACTCCTTTGCAACAAGAGTG 59.055 45.455 29.63 29.63 39.66 3.51
2802 3508 2.945008 CACTCCTTTGCAACAAGAGTGA 59.055 45.455 30.74 13.37 40.43 3.41
2803 3509 3.567164 CACTCCTTTGCAACAAGAGTGAT 59.433 43.478 30.74 9.72 40.43 3.06
2835 3541 6.678568 AGGACTTCTGCAATAGCTATACAT 57.321 37.500 6.68 0.00 42.74 2.29
2836 3542 7.072263 AGGACTTCTGCAATAGCTATACATT 57.928 36.000 6.68 0.00 42.74 2.71
2837 3543 7.512992 AGGACTTCTGCAATAGCTATACATTT 58.487 34.615 6.68 0.00 42.74 2.32
2838 3544 7.995488 AGGACTTCTGCAATAGCTATACATTTT 59.005 33.333 6.68 0.00 42.74 1.82
2839 3545 8.624776 GGACTTCTGCAATAGCTATACATTTTT 58.375 33.333 6.68 0.00 42.74 1.94
2867 3573 4.527509 TTGAAACAAAGGTCTTGTTGCA 57.472 36.364 6.89 6.89 43.96 4.08
2868 3574 4.108699 TGAAACAAAGGTCTTGTTGCAG 57.891 40.909 6.89 0.00 41.60 4.41
2871 3577 4.799564 AACAAAGGTCTTGTTGCAGAAA 57.200 36.364 2.21 0.00 40.70 2.52
2872 3578 4.799564 ACAAAGGTCTTGTTGCAGAAAA 57.200 36.364 0.00 0.00 0.00 2.29
2873 3579 5.343307 ACAAAGGTCTTGTTGCAGAAAAT 57.657 34.783 0.00 0.00 0.00 1.82
2874 3580 5.733676 ACAAAGGTCTTGTTGCAGAAAATT 58.266 33.333 0.00 0.00 0.00 1.82
2875 3581 6.172630 ACAAAGGTCTTGTTGCAGAAAATTT 58.827 32.000 0.00 0.00 0.00 1.82
2877 3583 7.821846 ACAAAGGTCTTGTTGCAGAAAATTTTA 59.178 29.630 2.75 0.00 0.00 1.52
2880 3586 6.980397 AGGTCTTGTTGCAGAAAATTTTACAG 59.020 34.615 2.75 0.00 0.00 2.74
2881 3587 6.756542 GGTCTTGTTGCAGAAAATTTTACAGT 59.243 34.615 2.75 0.00 0.00 3.55
2882 3588 7.918562 GGTCTTGTTGCAGAAAATTTTACAGTA 59.081 33.333 2.75 0.00 0.00 2.74
2886 3592 7.648142 TGTTGCAGAAAATTTTACAGTAGAGG 58.352 34.615 2.75 0.00 0.00 3.69
2887 3593 7.284489 TGTTGCAGAAAATTTTACAGTAGAGGT 59.716 33.333 2.75 0.00 0.00 3.85
2889 3595 7.224297 TGCAGAAAATTTTACAGTAGAGGTCT 58.776 34.615 2.75 0.00 0.00 3.85
2891 3597 8.017946 GCAGAAAATTTTACAGTAGAGGTCTTG 58.982 37.037 2.75 0.00 0.00 3.02
2892 3598 9.057089 CAGAAAATTTTACAGTAGAGGTCTTGT 57.943 33.333 2.75 0.00 0.00 3.16
2893 3599 9.628500 AGAAAATTTTACAGTAGAGGTCTTGTT 57.372 29.630 2.75 0.00 0.00 2.83
2895 3601 6.803154 ATTTTACAGTAGAGGTCTTGTTGC 57.197 37.500 0.00 0.00 0.00 4.17
2897 3603 3.393089 ACAGTAGAGGTCTTGTTGCAG 57.607 47.619 0.00 0.00 0.00 4.41
2900 3606 4.141711 ACAGTAGAGGTCTTGTTGCAGAAA 60.142 41.667 0.00 0.00 0.00 2.52
2902 3608 3.567478 AGAGGTCTTGTTGCAGAAACT 57.433 42.857 0.00 0.00 39.70 2.66
2904 3610 4.273318 AGAGGTCTTGTTGCAGAAACTTT 58.727 39.130 0.00 0.00 39.70 2.66
2905 3611 4.706962 AGAGGTCTTGTTGCAGAAACTTTT 59.293 37.500 0.00 0.00 39.70 2.27
2906 3612 4.998788 AGGTCTTGTTGCAGAAACTTTTC 58.001 39.130 0.00 0.00 39.70 2.29
2907 3613 4.112634 GGTCTTGTTGCAGAAACTTTTCC 58.887 43.478 0.00 0.00 39.70 3.13
2908 3614 4.381505 GGTCTTGTTGCAGAAACTTTTCCA 60.382 41.667 0.00 0.00 39.70 3.53
2909 3615 4.562789 GTCTTGTTGCAGAAACTTTTCCAC 59.437 41.667 0.00 0.00 39.70 4.02
2910 3616 3.143807 TGTTGCAGAAACTTTTCCACG 57.856 42.857 0.00 0.00 39.70 4.94
2911 3617 1.852280 GTTGCAGAAACTTTTCCACGC 59.148 47.619 0.00 0.77 37.92 5.34
2912 3618 0.028770 TGCAGAAACTTTTCCACGCG 59.971 50.000 3.53 3.53 37.92 6.01
2913 3619 0.660300 GCAGAAACTTTTCCACGCGG 60.660 55.000 12.47 0.00 37.92 6.46
2914 3620 0.661020 CAGAAACTTTTCCACGCGGT 59.339 50.000 12.47 0.00 37.92 5.68
2915 3621 1.064952 CAGAAACTTTTCCACGCGGTT 59.935 47.619 12.47 0.00 37.92 4.44
2916 3622 1.746787 AGAAACTTTTCCACGCGGTTT 59.253 42.857 12.47 9.18 37.92 3.27
2917 3623 2.164827 AGAAACTTTTCCACGCGGTTTT 59.835 40.909 12.47 0.00 37.92 2.43
2918 3624 2.658373 AACTTTTCCACGCGGTTTTT 57.342 40.000 12.47 0.00 0.00 1.94
2919 3625 2.197792 ACTTTTCCACGCGGTTTTTC 57.802 45.000 12.47 0.00 0.00 2.29
2920 3626 1.746787 ACTTTTCCACGCGGTTTTTCT 59.253 42.857 12.47 0.00 0.00 2.52
2921 3627 2.164827 ACTTTTCCACGCGGTTTTTCTT 59.835 40.909 12.47 0.00 0.00 2.52
2922 3628 2.943449 TTTCCACGCGGTTTTTCTTT 57.057 40.000 12.47 0.00 0.00 2.52
2923 3629 2.943449 TTCCACGCGGTTTTTCTTTT 57.057 40.000 12.47 0.00 0.00 2.27
2924 3630 2.943449 TCCACGCGGTTTTTCTTTTT 57.057 40.000 12.47 0.00 0.00 1.94
2947 3653 3.205815 ACAAAGGCCTTGTTGCAGA 57.794 47.368 21.33 0.00 46.49 4.26
2948 3654 1.484038 ACAAAGGCCTTGTTGCAGAA 58.516 45.000 21.33 0.00 46.49 3.02
2949 3655 2.041701 ACAAAGGCCTTGTTGCAGAAT 58.958 42.857 21.33 0.00 46.49 2.40
2950 3656 2.435437 ACAAAGGCCTTGTTGCAGAATT 59.565 40.909 21.33 0.00 46.49 2.17
2951 3657 3.118298 ACAAAGGCCTTGTTGCAGAATTT 60.118 39.130 21.33 0.00 46.49 1.82
2952 3658 3.843893 AAGGCCTTGTTGCAGAATTTT 57.156 38.095 19.73 0.00 0.00 1.82
2953 3659 3.843893 AGGCCTTGTTGCAGAATTTTT 57.156 38.095 0.00 0.00 0.00 1.94
2972 3678 3.731274 TTTTCGCAACAAAGGTTTTGC 57.269 38.095 1.68 0.00 43.90 3.68
2973 3679 2.663826 TTCGCAACAAAGGTTTTGCT 57.336 40.000 4.91 0.00 44.94 3.91
2974 3680 1.919918 TCGCAACAAAGGTTTTGCTG 58.080 45.000 4.91 1.66 44.94 4.41
2975 3681 0.301388 CGCAACAAAGGTTTTGCTGC 59.699 50.000 16.00 16.00 44.94 5.25
2976 3682 0.657312 GCAACAAAGGTTTTGCTGCC 59.343 50.000 15.39 2.68 43.96 4.85
2977 3683 0.929615 CAACAAAGGTTTTGCTGCCG 59.070 50.000 0.00 0.00 34.21 5.69
2978 3684 0.820871 AACAAAGGTTTTGCTGCCGA 59.179 45.000 0.00 0.00 31.83 5.54
2979 3685 0.820871 ACAAAGGTTTTGCTGCCGAA 59.179 45.000 0.00 0.00 0.00 4.30
2980 3686 1.205893 ACAAAGGTTTTGCTGCCGAAA 59.794 42.857 0.00 0.00 0.00 3.46
2981 3687 2.158971 ACAAAGGTTTTGCTGCCGAAAT 60.159 40.909 0.00 0.00 0.00 2.17
2982 3688 2.871633 CAAAGGTTTTGCTGCCGAAATT 59.128 40.909 0.00 0.00 0.00 1.82
2983 3689 2.908688 AGGTTTTGCTGCCGAAATTT 57.091 40.000 0.00 0.00 0.00 1.82
2984 3690 4.329462 AAGGTTTTGCTGCCGAAATTTA 57.671 36.364 0.00 0.00 0.00 1.40
2985 3691 4.329462 AGGTTTTGCTGCCGAAATTTAA 57.671 36.364 0.00 0.00 0.00 1.52
2986 3692 4.698575 AGGTTTTGCTGCCGAAATTTAAA 58.301 34.783 0.00 0.00 0.00 1.52
2987 3693 5.119694 AGGTTTTGCTGCCGAAATTTAAAA 58.880 33.333 0.00 0.00 0.00 1.52
2988 3694 5.586643 AGGTTTTGCTGCCGAAATTTAAAAA 59.413 32.000 0.00 0.00 0.00 1.94
2989 3695 5.679355 GGTTTTGCTGCCGAAATTTAAAAAC 59.321 36.000 0.00 4.11 36.19 2.43
2990 3696 6.457663 GGTTTTGCTGCCGAAATTTAAAAACT 60.458 34.615 14.53 0.00 36.80 2.66
2991 3697 5.649602 TTGCTGCCGAAATTTAAAAACTG 57.350 34.783 0.00 0.00 0.00 3.16
2992 3698 4.938080 TGCTGCCGAAATTTAAAAACTGA 58.062 34.783 0.00 0.00 0.00 3.41
2993 3699 5.537188 TGCTGCCGAAATTTAAAAACTGAT 58.463 33.333 0.00 0.00 0.00 2.90
2994 3700 6.682746 TGCTGCCGAAATTTAAAAACTGATA 58.317 32.000 0.00 0.00 0.00 2.15
2995 3701 6.806249 TGCTGCCGAAATTTAAAAACTGATAG 59.194 34.615 0.00 0.00 0.00 2.08
2996 3702 7.027161 GCTGCCGAAATTTAAAAACTGATAGA 58.973 34.615 0.00 0.00 0.00 1.98
2997 3703 7.540745 GCTGCCGAAATTTAAAAACTGATAGAA 59.459 33.333 0.00 0.00 0.00 2.10
2998 3704 9.573133 CTGCCGAAATTTAAAAACTGATAGAAT 57.427 29.630 0.00 0.00 0.00 2.40
2999 3705 9.567848 TGCCGAAATTTAAAAACTGATAGAATC 57.432 29.630 0.00 0.00 0.00 2.52
3000 3706 9.020813 GCCGAAATTTAAAAACTGATAGAATCC 57.979 33.333 0.00 0.00 0.00 3.01
3009 3715 8.593492 AAAAACTGATAGAATCCTTTTGCAAC 57.407 30.769 0.00 0.00 0.00 4.17
3010 3716 6.899393 AACTGATAGAATCCTTTTGCAACA 57.101 33.333 0.00 0.00 0.00 3.33
3011 3717 6.506500 ACTGATAGAATCCTTTTGCAACAG 57.493 37.500 5.59 5.59 0.00 3.16
3012 3718 5.105997 ACTGATAGAATCCTTTTGCAACAGC 60.106 40.000 7.10 0.00 0.00 4.40
3013 3719 4.158394 TGATAGAATCCTTTTGCAACAGCC 59.842 41.667 7.10 0.00 0.00 4.85
3014 3720 1.620323 AGAATCCTTTTGCAACAGCCC 59.380 47.619 7.10 0.00 0.00 5.19
3015 3721 0.318120 AATCCTTTTGCAACAGCCCG 59.682 50.000 7.10 0.00 0.00 6.13
3016 3722 0.827507 ATCCTTTTGCAACAGCCCGT 60.828 50.000 7.10 0.00 0.00 5.28
3017 3723 1.300080 CCTTTTGCAACAGCCCGTG 60.300 57.895 7.10 0.00 0.00 4.94
3018 3724 1.437160 CTTTTGCAACAGCCCGTGT 59.563 52.632 0.00 0.00 43.24 4.49
3025 3731 4.058797 ACAGCCCGTGTTTGTAGC 57.941 55.556 0.00 0.00 34.94 3.58
3026 3732 1.147376 ACAGCCCGTGTTTGTAGCA 59.853 52.632 0.00 0.00 34.94 3.49
3027 3733 0.250727 ACAGCCCGTGTTTGTAGCAT 60.251 50.000 0.00 0.00 34.94 3.79
3028 3734 0.168788 CAGCCCGTGTTTGTAGCATG 59.831 55.000 0.00 0.00 0.00 4.06
3029 3735 0.960364 AGCCCGTGTTTGTAGCATGG 60.960 55.000 0.00 0.00 41.44 3.66
3031 3737 2.941210 CCGTGTTTGTAGCATGGGT 58.059 52.632 0.00 0.00 38.88 4.51
3032 3738 0.521291 CCGTGTTTGTAGCATGGGTG 59.479 55.000 0.00 0.00 38.88 4.61
3033 3739 1.234821 CGTGTTTGTAGCATGGGTGT 58.765 50.000 0.00 0.00 0.00 4.16
3034 3740 1.606668 CGTGTTTGTAGCATGGGTGTT 59.393 47.619 0.00 0.00 0.00 3.32
3035 3741 2.604373 CGTGTTTGTAGCATGGGTGTTG 60.604 50.000 0.00 0.00 0.00 3.33
3036 3742 1.959985 TGTTTGTAGCATGGGTGTTGG 59.040 47.619 0.00 0.00 0.00 3.77
3037 3743 1.960689 GTTTGTAGCATGGGTGTTGGT 59.039 47.619 0.00 0.00 0.00 3.67
3038 3744 1.614996 TTGTAGCATGGGTGTTGGTG 58.385 50.000 0.00 0.00 0.00 4.17
3039 3745 0.476338 TGTAGCATGGGTGTTGGTGT 59.524 50.000 0.00 0.00 0.00 4.16
3040 3746 1.165270 GTAGCATGGGTGTTGGTGTC 58.835 55.000 0.00 0.00 0.00 3.67
3041 3747 0.321210 TAGCATGGGTGTTGGTGTCG 60.321 55.000 0.00 0.00 0.00 4.35
3042 3748 2.953821 CATGGGTGTTGGTGTCGC 59.046 61.111 0.00 0.00 0.00 5.19
3043 3749 1.896183 CATGGGTGTTGGTGTCGCA 60.896 57.895 0.00 0.00 0.00 5.10
3044 3750 1.074775 ATGGGTGTTGGTGTCGCAT 59.925 52.632 0.00 0.00 0.00 4.73
3045 3751 1.243342 ATGGGTGTTGGTGTCGCATG 61.243 55.000 0.00 0.00 34.41 4.06
3046 3752 2.625823 GGGTGTTGGTGTCGCATGG 61.626 63.158 0.00 0.00 0.00 3.66
3047 3753 2.255252 GTGTTGGTGTCGCATGGC 59.745 61.111 0.00 0.00 0.00 4.40
3048 3754 2.203266 TGTTGGTGTCGCATGGCA 60.203 55.556 0.00 0.00 0.00 4.92
3049 3755 2.260154 TGTTGGTGTCGCATGGCAG 61.260 57.895 0.00 0.00 0.00 4.85
3050 3756 3.364441 TTGGTGTCGCATGGCAGC 61.364 61.111 0.00 0.00 0.00 5.25
3064 3770 2.666862 CAGCCGCCCGTGTTTGTA 60.667 61.111 0.00 0.00 0.00 2.41
3065 3771 2.358247 AGCCGCCCGTGTTTGTAG 60.358 61.111 0.00 0.00 0.00 2.74
3068 3774 1.908066 GCCGCCCGTGTTTGTAGAAG 61.908 60.000 0.00 0.00 0.00 2.85
3075 3781 3.250040 CCCGTGTTTGTAGAAGAAGGTTG 59.750 47.826 0.00 0.00 0.00 3.77
3077 3783 3.311322 CGTGTTTGTAGAAGAAGGTTGCA 59.689 43.478 0.00 0.00 0.00 4.08
3081 3787 4.689612 TTGTAGAAGAAGGTTGCAGACT 57.310 40.909 0.00 0.00 0.00 3.24
3108 4225 3.244033 AGCACACTCTCTAGCATGTTC 57.756 47.619 0.00 0.00 0.00 3.18
3109 4226 2.830923 AGCACACTCTCTAGCATGTTCT 59.169 45.455 0.00 0.00 0.00 3.01
3145 4262 2.489971 CGTTGTTTGCTCTACCTTGGA 58.510 47.619 0.00 0.00 0.00 3.53
3159 4276 8.506168 CTCTACCTTGGAGCATTTACAATTTA 57.494 34.615 0.00 0.00 0.00 1.40
3184 4301 5.183713 CACAATGCATCTTAAGTTTCCTCCA 59.816 40.000 0.00 0.00 0.00 3.86
3189 4306 5.104360 TGCATCTTAAGTTTCCTCCAGCTAT 60.104 40.000 1.63 0.00 0.00 2.97
3199 4316 6.948309 AGTTTCCTCCAGCTATATTTTTGTGT 59.052 34.615 0.00 0.00 0.00 3.72
3201 4318 6.757897 TCCTCCAGCTATATTTTTGTGTTG 57.242 37.500 0.00 0.00 0.00 3.33
3205 4322 5.709631 TCCAGCTATATTTTTGTGTTGCAGA 59.290 36.000 0.00 0.00 0.00 4.26
3206 4323 6.377996 TCCAGCTATATTTTTGTGTTGCAGAT 59.622 34.615 0.00 0.00 0.00 2.90
3219 4336 8.565896 TTGTGTTGCAGATGATTTATCTTACT 57.434 30.769 0.00 0.00 43.68 2.24
3220 4337 8.201554 TGTGTTGCAGATGATTTATCTTACTC 57.798 34.615 0.00 0.00 43.68 2.59
3221 4338 8.043113 TGTGTTGCAGATGATTTATCTTACTCT 58.957 33.333 0.00 0.00 43.68 3.24
3222 4339 9.534565 GTGTTGCAGATGATTTATCTTACTCTA 57.465 33.333 0.00 0.00 43.68 2.43
3223 4340 9.755804 TGTTGCAGATGATTTATCTTACTCTAG 57.244 33.333 0.00 0.00 43.68 2.43
3224 4341 9.973450 GTTGCAGATGATTTATCTTACTCTAGA 57.027 33.333 0.00 0.00 43.68 2.43
3304 4468 4.256920 GCAGGAGCACTTCTTCAGAATTA 58.743 43.478 0.00 0.00 41.58 1.40
3310 4475 6.348868 GGAGCACTTCTTCAGAATTACTTTGG 60.349 42.308 0.00 0.00 33.01 3.28
3318 4483 5.600908 TCAGAATTACTTTGGCGTAACAC 57.399 39.130 0.00 0.00 32.67 3.32
3322 4487 1.515081 TACTTTGGCGTAACACAGGC 58.485 50.000 0.00 0.00 37.31 4.85
3325 4490 2.026522 TTGGCGTAACACAGGCAAC 58.973 52.632 0.31 0.00 45.80 4.17
3333 4498 1.774110 AACACAGGCAACACATTCCA 58.226 45.000 0.00 0.00 41.41 3.53
3363 4528 9.665264 AGAAATTTCGAACAAATCTCAAGTAAC 57.335 29.630 12.42 0.00 0.00 2.50
3364 4529 8.797266 AAATTTCGAACAAATCTCAAGTAACC 57.203 30.769 0.00 0.00 0.00 2.85
3369 4536 4.724279 ACAAATCTCAAGTAACCCTGGT 57.276 40.909 0.00 0.00 0.00 4.00
3384 4551 3.387699 ACCCTGGTTTTCAATTTGTCCTG 59.612 43.478 0.00 1.06 0.00 3.86
3385 4552 3.244181 CCCTGGTTTTCAATTTGTCCTGG 60.244 47.826 14.55 14.55 35.04 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 1.267121 TCTTCCTTAGGCTTGACGCT 58.733 50.000 0.00 0.00 39.13 5.07
68 69 4.498894 TCATCATGTGCTCCATCTTCTT 57.501 40.909 0.00 0.00 0.00 2.52
106 107 2.800544 CGTCTCCAATGTCTTCGTTGTT 59.199 45.455 0.00 0.00 38.48 2.83
149 150 3.067320 GTGCAAGCTTGACCTCTTTCTTT 59.933 43.478 30.39 0.00 0.00 2.52
250 251 3.955471 TCCACCATGAGTTCTTTCCATC 58.045 45.455 0.00 0.00 0.00 3.51
450 451 0.250209 CAAGCATCTCCATAGGCGCT 60.250 55.000 7.64 0.00 33.63 5.92
479 480 2.828520 CGCCATCTCCTAGACCATATGT 59.171 50.000 1.24 0.00 0.00 2.29
651 652 7.898014 ACCCCAACCTTTAAATCTATCATTC 57.102 36.000 0.00 0.00 0.00 2.67
712 718 5.074746 ACTCTCAAACCCAACCCTTAAAT 57.925 39.130 0.00 0.00 0.00 1.40
732 738 2.339769 ACAGGGGCAAAGACTAGAACT 58.660 47.619 0.00 0.00 0.00 3.01
772 778 4.398044 GGGTTGAGAAGTGTCAGTTTTTGA 59.602 41.667 0.00 0.00 0.00 2.69
782 788 4.338400 GCAGTTTTAAGGGTTGAGAAGTGT 59.662 41.667 0.00 0.00 0.00 3.55
811 817 5.574970 AGAACTCTCAAACCCTCAAATCT 57.425 39.130 0.00 0.00 0.00 2.40
813 819 6.441088 AGTAGAACTCTCAAACCCTCAAAT 57.559 37.500 0.00 0.00 0.00 2.32
844 850 5.279506 CGATTGAGCCCTAATAGCCTAAGAA 60.280 44.000 0.00 0.00 0.00 2.52
859 865 0.464373 TGAGCCAATCCGATTGAGCC 60.464 55.000 20.65 15.00 42.83 4.70
860 866 1.534595 GATGAGCCAATCCGATTGAGC 59.465 52.381 20.65 19.77 42.83 4.26
861 867 2.149578 GGATGAGCCAATCCGATTGAG 58.850 52.381 20.65 12.37 42.83 3.02
862 868 2.260844 GGATGAGCCAATCCGATTGA 57.739 50.000 20.65 3.03 42.83 2.57
873 879 0.257039 ATCAGGTGGTTGGATGAGCC 59.743 55.000 0.00 0.00 37.10 4.70
874 880 1.065199 TGATCAGGTGGTTGGATGAGC 60.065 52.381 0.00 0.00 0.00 4.26
875 881 2.238144 ACTGATCAGGTGGTTGGATGAG 59.762 50.000 26.08 0.00 0.00 2.90
876 882 2.026915 CACTGATCAGGTGGTTGGATGA 60.027 50.000 26.08 0.00 0.00 2.92
877 883 2.290514 ACACTGATCAGGTGGTTGGATG 60.291 50.000 26.08 13.96 38.83 3.51
878 884 1.988107 ACACTGATCAGGTGGTTGGAT 59.012 47.619 26.08 0.00 38.83 3.41
879 885 1.347707 GACACTGATCAGGTGGTTGGA 59.652 52.381 26.08 0.00 38.83 3.53
880 886 1.813513 GACACTGATCAGGTGGTTGG 58.186 55.000 26.08 9.02 38.83 3.77
881 887 1.432514 CGACACTGATCAGGTGGTTG 58.567 55.000 26.08 18.97 38.83 3.77
882 888 0.320771 GCGACACTGATCAGGTGGTT 60.321 55.000 26.08 2.09 38.83 3.67
883 889 1.188219 AGCGACACTGATCAGGTGGT 61.188 55.000 26.08 19.72 38.83 4.16
884 890 1.593787 AGCGACACTGATCAGGTGG 59.406 57.895 26.08 20.48 38.83 4.61
899 905 0.525455 TGATCAATCGGTCGACAGCG 60.525 55.000 18.91 12.84 45.20 5.18
900 906 1.203928 CTGATCAATCGGTCGACAGC 58.796 55.000 18.91 0.00 0.00 4.40
901 907 2.188524 CACTGATCAATCGGTCGACAG 58.811 52.381 18.91 14.28 44.22 3.51
902 908 1.544246 ACACTGATCAATCGGTCGACA 59.456 47.619 18.91 0.00 44.22 4.35
903 909 2.186076 GACACTGATCAATCGGTCGAC 58.814 52.381 7.13 7.13 44.22 4.20
904 910 1.816224 TGACACTGATCAATCGGTCGA 59.184 47.619 1.40 0.00 44.22 4.20
905 911 2.278026 TGACACTGATCAATCGGTCG 57.722 50.000 1.40 1.79 44.22 4.79
906 912 2.673368 GGTTGACACTGATCAATCGGTC 59.327 50.000 1.40 3.06 44.22 4.79
907 913 2.615493 GGGTTGACACTGATCAATCGGT 60.615 50.000 0.00 0.00 46.85 4.69
908 914 2.009774 GGGTTGACACTGATCAATCGG 58.990 52.381 0.00 0.00 40.11 4.18
909 915 2.977914 AGGGTTGACACTGATCAATCG 58.022 47.619 0.00 0.00 40.11 3.34
910 916 3.691609 GGAAGGGTTGACACTGATCAATC 59.308 47.826 0.00 0.00 40.60 2.67
911 917 3.331889 AGGAAGGGTTGACACTGATCAAT 59.668 43.478 0.00 0.00 40.60 2.57
912 918 2.711009 AGGAAGGGTTGACACTGATCAA 59.289 45.455 0.00 0.00 36.23 2.57
913 919 2.338809 AGGAAGGGTTGACACTGATCA 58.661 47.619 0.00 0.00 0.00 2.92
914 920 3.676324 CGTAGGAAGGGTTGACACTGATC 60.676 52.174 0.00 0.00 0.00 2.92
915 921 2.233922 CGTAGGAAGGGTTGACACTGAT 59.766 50.000 0.00 0.00 0.00 2.90
916 922 1.616865 CGTAGGAAGGGTTGACACTGA 59.383 52.381 0.00 0.00 0.00 3.41
917 923 1.343465 ACGTAGGAAGGGTTGACACTG 59.657 52.381 0.00 0.00 0.00 3.66
918 924 1.343465 CACGTAGGAAGGGTTGACACT 59.657 52.381 0.00 0.00 0.00 3.55
919 925 1.792006 CACGTAGGAAGGGTTGACAC 58.208 55.000 0.00 0.00 0.00 3.67
920 926 0.034337 GCACGTAGGAAGGGTTGACA 59.966 55.000 0.00 0.00 0.00 3.58
921 927 0.034337 TGCACGTAGGAAGGGTTGAC 59.966 55.000 0.00 0.00 0.00 3.18
922 928 0.981183 ATGCACGTAGGAAGGGTTGA 59.019 50.000 0.00 0.00 0.00 3.18
923 929 1.086696 CATGCACGTAGGAAGGGTTG 58.913 55.000 0.00 0.00 0.00 3.77
924 930 0.690762 ACATGCACGTAGGAAGGGTT 59.309 50.000 0.00 0.00 0.00 4.11
925 931 0.690762 AACATGCACGTAGGAAGGGT 59.309 50.000 0.00 0.00 0.00 4.34
926 932 1.821216 AAACATGCACGTAGGAAGGG 58.179 50.000 0.00 0.00 0.00 3.95
927 933 4.271049 CAGATAAACATGCACGTAGGAAGG 59.729 45.833 0.00 0.00 0.00 3.46
928 934 4.870426 ACAGATAAACATGCACGTAGGAAG 59.130 41.667 0.00 0.00 0.00 3.46
929 935 4.827692 ACAGATAAACATGCACGTAGGAA 58.172 39.130 0.00 0.00 0.00 3.36
930 936 4.465632 ACAGATAAACATGCACGTAGGA 57.534 40.909 0.00 0.00 0.00 2.94
931 937 4.206404 CGTACAGATAAACATGCACGTAGG 59.794 45.833 0.00 0.00 0.00 3.18
932 938 4.317139 GCGTACAGATAAACATGCACGTAG 60.317 45.833 0.00 0.00 0.00 3.51
938 944 2.936498 AGGTGCGTACAGATAAACATGC 59.064 45.455 5.86 0.00 0.00 4.06
956 962 3.585990 GCTGCAACGCACACAGGT 61.586 61.111 0.00 0.00 33.79 4.00
964 970 0.247145 GTACGTATGTGCTGCAACGC 60.247 55.000 21.24 6.31 36.11 4.84
965 971 1.346365 AGTACGTATGTGCTGCAACG 58.654 50.000 20.10 20.10 39.77 4.10
966 972 2.601763 GGTAGTACGTATGTGCTGCAAC 59.398 50.000 19.63 9.16 43.37 4.17
974 980 8.511604 TTTTTCTAGCTAGGTAGTACGTATGT 57.488 34.615 24.45 0.00 0.00 2.29
1209 1233 0.248866 GCTGGTCCGTGTTTTGGTTG 60.249 55.000 0.00 0.00 0.00 3.77
1214 1238 1.528309 CCCAGCTGGTCCGTGTTTT 60.528 57.895 30.63 0.00 0.00 2.43
1215 1239 2.113139 CCCAGCTGGTCCGTGTTT 59.887 61.111 30.63 0.00 0.00 2.83
1402 1441 2.351276 GGTGTCGTTGGCCAGGAT 59.649 61.111 5.11 0.00 0.00 3.24
1476 1530 3.757828 CCCGGCCCGTACACGTAA 61.758 66.667 0.85 0.00 37.74 3.18
1728 1782 2.429571 GCGTCGCCGAGTAACACA 60.430 61.111 5.75 0.00 35.63 3.72
1840 1894 1.153349 GGGCCTGACCGTCAATCTC 60.153 63.158 0.84 0.00 40.62 2.75
2006 2064 2.493973 CTGAGCCGCTCACCTCTC 59.506 66.667 19.36 0.00 35.39 3.20
2007 2065 3.768922 GCTGAGCCGCTCACCTCT 61.769 66.667 19.36 0.00 35.39 3.69
2034 2092 1.123077 AGCATAGATCGAACAGGCCA 58.877 50.000 5.01 0.00 0.00 5.36
2038 2096 3.180584 GCGTTGTAGCATAGATCGAACAG 59.819 47.826 0.00 0.00 37.05 3.16
2046 2104 0.172578 ACTGCGCGTTGTAGCATAGA 59.827 50.000 8.43 0.00 42.95 1.98
2081 2139 2.158943 ACCAGCGTAATCTTAGGGAAGC 60.159 50.000 0.00 0.00 32.21 3.86
2088 2146 3.504863 GTCGAACACCAGCGTAATCTTA 58.495 45.455 0.00 0.00 0.00 2.10
2345 2407 2.037901 CAAGGAGCAGAGAGGCTATCA 58.962 52.381 12.28 0.00 45.99 2.15
2556 2650 9.611284 TGAAATTCTAGAACATTGTTCGATTTG 57.389 29.630 24.15 15.58 0.00 2.32
2561 2655 9.831737 ATCTTTGAAATTCTAGAACATTGTTCG 57.168 29.630 20.71 10.18 0.00 3.95
2629 2724 7.504924 TGTGACTATTTTTCGAAATTCAGGT 57.495 32.000 12.12 7.47 0.00 4.00
2661 2806 7.816945 AGCATCGTCCTTTTTAAAATTGATG 57.183 32.000 0.55 11.19 35.12 3.07
2664 2809 7.275341 TGCATAGCATCGTCCTTTTTAAAATTG 59.725 33.333 0.55 0.00 31.71 2.32
2682 2827 3.860605 ACCGGCCGATGCATAGCA 61.861 61.111 30.73 0.00 44.86 3.49
2683 2828 3.349006 CACCGGCCGATGCATAGC 61.349 66.667 30.73 11.82 40.13 2.97
2684 2829 0.603707 ATTCACCGGCCGATGCATAG 60.604 55.000 30.73 10.69 40.13 2.23
2685 2830 0.682292 TATTCACCGGCCGATGCATA 59.318 50.000 30.73 18.77 40.13 3.14
2686 2831 0.179032 TTATTCACCGGCCGATGCAT 60.179 50.000 30.73 20.11 40.13 3.96
2688 2833 1.803334 TATTATTCACCGGCCGATGC 58.197 50.000 30.73 0.00 0.00 3.91
2689 2834 3.659786 TCTTATTATTCACCGGCCGATG 58.340 45.455 30.73 23.49 0.00 3.84
2690 2835 4.345859 TTCTTATTATTCACCGGCCGAT 57.654 40.909 30.73 6.36 0.00 4.18
2691 2836 3.823281 TTCTTATTATTCACCGGCCGA 57.177 42.857 30.73 6.75 0.00 5.54
2692 2837 4.573201 TCTTTTCTTATTATTCACCGGCCG 59.427 41.667 21.04 21.04 0.00 6.13
2693 2838 6.486993 AGATCTTTTCTTATTATTCACCGGCC 59.513 38.462 0.00 0.00 0.00 6.13
2694 2839 7.355778 CAGATCTTTTCTTATTATTCACCGGC 58.644 38.462 0.00 0.00 29.93 6.13
2695 2840 7.355778 GCAGATCTTTTCTTATTATTCACCGG 58.644 38.462 0.00 0.00 29.93 5.28
2696 2841 7.355778 GGCAGATCTTTTCTTATTATTCACCG 58.644 38.462 0.00 0.00 29.93 4.94
2697 2842 7.355778 CGGCAGATCTTTTCTTATTATTCACC 58.644 38.462 0.00 0.00 29.93 4.02
2698 2843 6.853362 GCGGCAGATCTTTTCTTATTATTCAC 59.147 38.462 0.00 0.00 29.93 3.18
2699 2844 6.017109 GGCGGCAGATCTTTTCTTATTATTCA 60.017 38.462 3.07 0.00 29.93 2.57
2700 2845 6.205658 AGGCGGCAGATCTTTTCTTATTATTC 59.794 38.462 13.08 0.00 29.93 1.75
2701 2846 6.064717 AGGCGGCAGATCTTTTCTTATTATT 58.935 36.000 13.08 0.00 29.93 1.40
2702 2847 5.625150 AGGCGGCAGATCTTTTCTTATTAT 58.375 37.500 13.08 0.00 29.93 1.28
2703 2848 5.036117 AGGCGGCAGATCTTTTCTTATTA 57.964 39.130 13.08 0.00 29.93 0.98
2708 2853 1.457346 CAAGGCGGCAGATCTTTTCT 58.543 50.000 13.08 0.00 33.90 2.52
2709 2854 0.179153 GCAAGGCGGCAGATCTTTTC 60.179 55.000 13.08 0.00 0.00 2.29
2714 2859 2.124983 TCAGCAAGGCGGCAGATC 60.125 61.111 13.08 0.00 35.83 2.75
2723 2868 0.325933 TCATCCACTGGTCAGCAAGG 59.674 55.000 0.00 0.00 0.00 3.61
2726 2871 0.764271 TGTTCATCCACTGGTCAGCA 59.236 50.000 0.00 0.00 0.00 4.41
2727 2872 1.160137 GTGTTCATCCACTGGTCAGC 58.840 55.000 0.00 0.00 32.50 4.26
2728 2873 1.270305 ACGTGTTCATCCACTGGTCAG 60.270 52.381 0.00 0.00 33.07 3.51
2729 2874 0.756294 ACGTGTTCATCCACTGGTCA 59.244 50.000 0.00 0.00 33.07 4.02
2730 2875 1.878953 AACGTGTTCATCCACTGGTC 58.121 50.000 0.00 0.00 33.07 4.02
2732 2877 2.736721 CACTAACGTGTTCATCCACTGG 59.263 50.000 0.00 0.00 36.39 4.00
2734 2879 2.870435 GCCACTAACGTGTTCATCCACT 60.870 50.000 0.00 0.00 39.55 4.00
2737 2882 1.732259 CAGCCACTAACGTGTTCATCC 59.268 52.381 0.00 0.00 39.55 3.51
2738 2883 2.412089 GACAGCCACTAACGTGTTCATC 59.588 50.000 0.00 0.00 39.55 2.92
2744 2889 1.732259 GATTGGACAGCCACTAACGTG 59.268 52.381 0.00 0.00 45.94 4.49
2745 2890 1.338769 GGATTGGACAGCCACTAACGT 60.339 52.381 0.00 0.00 45.94 3.99
2747 2892 2.489938 TGGATTGGACAGCCACTAAC 57.510 50.000 0.00 0.00 45.94 2.34
2748 2893 2.092429 GGATGGATTGGACAGCCACTAA 60.092 50.000 0.00 0.00 45.94 2.24
2749 2894 1.490490 GGATGGATTGGACAGCCACTA 59.510 52.381 0.00 0.00 45.94 2.74
2751 2896 1.097547 CGGATGGATTGGACAGCCAC 61.098 60.000 0.00 0.00 45.94 5.01
2752 2897 1.224315 CGGATGGATTGGACAGCCA 59.776 57.895 0.00 0.00 44.36 4.75
2753 2898 1.097547 CACGGATGGATTGGACAGCC 61.098 60.000 0.00 0.00 40.87 4.85
2754 2899 0.392998 ACACGGATGGATTGGACAGC 60.393 55.000 0.00 0.00 0.00 4.40
2755 2900 2.979814 TACACGGATGGATTGGACAG 57.020 50.000 0.00 0.00 0.00 3.51
2756 2901 2.679639 GCTTACACGGATGGATTGGACA 60.680 50.000 0.00 0.00 0.00 4.02
2757 2902 1.940613 GCTTACACGGATGGATTGGAC 59.059 52.381 0.00 0.00 0.00 4.02
2759 2904 1.942657 CTGCTTACACGGATGGATTGG 59.057 52.381 0.00 0.00 0.00 3.16
2760 2905 2.609459 GACTGCTTACACGGATGGATTG 59.391 50.000 0.00 0.00 0.00 2.67
2761 2906 2.236146 TGACTGCTTACACGGATGGATT 59.764 45.455 0.00 0.00 0.00 3.01
2762 2907 1.831106 TGACTGCTTACACGGATGGAT 59.169 47.619 0.00 0.00 0.00 3.41
2765 2910 2.263077 GAGTGACTGCTTACACGGATG 58.737 52.381 0.00 0.00 41.22 3.51
2767 2912 0.601558 GGAGTGACTGCTTACACGGA 59.398 55.000 0.00 0.00 41.22 4.69
2768 2913 0.603569 AGGAGTGACTGCTTACACGG 59.396 55.000 0.00 0.00 41.22 4.94
2769 2914 2.440539 AAGGAGTGACTGCTTACACG 57.559 50.000 17.99 0.00 40.23 4.49
2770 2915 2.224314 GCAAAGGAGTGACTGCTTACAC 59.776 50.000 19.65 8.60 41.11 2.90
2772 2917 2.494059 TGCAAAGGAGTGACTGCTTAC 58.506 47.619 19.65 14.85 41.11 2.34
2776 2921 1.024271 TGTTGCAAAGGAGTGACTGC 58.976 50.000 0.00 0.00 35.32 4.40
2777 2922 2.945008 TCTTGTTGCAAAGGAGTGACTG 59.055 45.455 0.00 0.00 0.00 3.51
2778 2923 3.209410 CTCTTGTTGCAAAGGAGTGACT 58.791 45.455 0.00 0.00 0.00 3.41
2779 2924 2.945668 ACTCTTGTTGCAAAGGAGTGAC 59.054 45.455 21.43 2.38 0.00 3.67
2780 2925 2.945008 CACTCTTGTTGCAAAGGAGTGA 59.055 45.455 31.78 14.54 37.42 3.41
2784 3490 3.554934 ACATCACTCTTGTTGCAAAGGA 58.445 40.909 0.00 0.00 0.00 3.36
2785 3491 3.996150 ACATCACTCTTGTTGCAAAGG 57.004 42.857 0.00 0.00 0.00 3.11
2794 3500 5.788450 AGTCCTTCTACAACATCACTCTTG 58.212 41.667 0.00 0.00 0.00 3.02
2795 3501 6.426646 AAGTCCTTCTACAACATCACTCTT 57.573 37.500 0.00 0.00 0.00 2.85
2810 3516 6.516718 TGTATAGCTATTGCAGAAGTCCTTC 58.483 40.000 12.39 0.00 42.74 3.46
2811 3517 6.485830 TGTATAGCTATTGCAGAAGTCCTT 57.514 37.500 12.39 0.00 42.74 3.36
2812 3518 6.678568 ATGTATAGCTATTGCAGAAGTCCT 57.321 37.500 12.39 0.00 42.74 3.85
2813 3519 7.736447 AAATGTATAGCTATTGCAGAAGTCC 57.264 36.000 12.39 0.00 42.74 3.85
2844 3550 5.300752 TGCAACAAGACCTTTGTTTCAAAA 58.699 33.333 2.75 0.00 40.30 2.44
2845 3551 4.887748 TGCAACAAGACCTTTGTTTCAAA 58.112 34.783 2.75 0.00 40.30 2.69
2846 3552 4.219507 TCTGCAACAAGACCTTTGTTTCAA 59.780 37.500 2.75 0.00 40.30 2.69
2847 3553 3.761218 TCTGCAACAAGACCTTTGTTTCA 59.239 39.130 2.75 4.17 40.30 2.69
2848 3554 4.370364 TCTGCAACAAGACCTTTGTTTC 57.630 40.909 2.75 0.00 40.30 2.78
2849 3555 4.799564 TTCTGCAACAAGACCTTTGTTT 57.200 36.364 2.75 0.00 40.30 2.83
2850 3556 4.799564 TTTCTGCAACAAGACCTTTGTT 57.200 36.364 0.00 0.00 42.75 2.83
2852 3558 6.667007 AAATTTTCTGCAACAAGACCTTTG 57.333 33.333 0.00 0.00 0.00 2.77
2854 3560 7.327214 TGTAAAATTTTCTGCAACAAGACCTT 58.673 30.769 6.72 0.00 0.00 3.50
2855 3561 6.872920 TGTAAAATTTTCTGCAACAAGACCT 58.127 32.000 6.72 0.00 0.00 3.85
2856 3562 6.756542 ACTGTAAAATTTTCTGCAACAAGACC 59.243 34.615 6.72 0.00 0.00 3.85
2858 3564 8.898761 TCTACTGTAAAATTTTCTGCAACAAGA 58.101 29.630 6.72 4.28 0.00 3.02
2860 3566 8.134895 CCTCTACTGTAAAATTTTCTGCAACAA 58.865 33.333 6.72 0.00 0.00 2.83
2863 3569 7.719633 AGACCTCTACTGTAAAATTTTCTGCAA 59.280 33.333 6.72 0.00 0.00 4.08
2864 3570 7.224297 AGACCTCTACTGTAAAATTTTCTGCA 58.776 34.615 6.72 4.85 0.00 4.41
2867 3573 9.628500 AACAAGACCTCTACTGTAAAATTTTCT 57.372 29.630 6.72 0.00 0.00 2.52
2868 3574 9.665264 CAACAAGACCTCTACTGTAAAATTTTC 57.335 33.333 6.72 0.37 0.00 2.29
2871 3577 6.770785 TGCAACAAGACCTCTACTGTAAAATT 59.229 34.615 0.00 0.00 0.00 1.82
2872 3578 6.296026 TGCAACAAGACCTCTACTGTAAAAT 58.704 36.000 0.00 0.00 0.00 1.82
2873 3579 5.676552 TGCAACAAGACCTCTACTGTAAAA 58.323 37.500 0.00 0.00 0.00 1.52
2874 3580 5.069914 TCTGCAACAAGACCTCTACTGTAAA 59.930 40.000 0.00 0.00 0.00 2.01
2875 3581 4.587262 TCTGCAACAAGACCTCTACTGTAA 59.413 41.667 0.00 0.00 0.00 2.41
2877 3583 2.965831 TCTGCAACAAGACCTCTACTGT 59.034 45.455 0.00 0.00 0.00 3.55
2880 3586 4.381411 AGTTTCTGCAACAAGACCTCTAC 58.619 43.478 0.00 0.00 37.93 2.59
2881 3587 4.689612 AGTTTCTGCAACAAGACCTCTA 57.310 40.909 0.00 0.00 37.93 2.43
2882 3588 3.567478 AGTTTCTGCAACAAGACCTCT 57.433 42.857 0.00 0.00 37.93 3.69
2886 3592 4.562789 GTGGAAAAGTTTCTGCAACAAGAC 59.437 41.667 3.92 0.00 37.93 3.01
2887 3593 4.674101 CGTGGAAAAGTTTCTGCAACAAGA 60.674 41.667 3.92 0.00 37.93 3.02
2889 3595 3.506810 CGTGGAAAAGTTTCTGCAACAA 58.493 40.909 3.92 0.00 37.93 2.83
2891 3597 1.852280 GCGTGGAAAAGTTTCTGCAAC 59.148 47.619 3.92 0.00 37.35 4.17
2892 3598 1.532921 CGCGTGGAAAAGTTTCTGCAA 60.533 47.619 0.00 0.00 37.35 4.08
2893 3599 0.028770 CGCGTGGAAAAGTTTCTGCA 59.971 50.000 0.00 0.00 37.35 4.41
2895 3601 0.661020 ACCGCGTGGAAAAGTTTCTG 59.339 50.000 24.59 0.00 39.21 3.02
2897 3603 2.197792 AAACCGCGTGGAAAAGTTTC 57.802 45.000 24.59 0.00 39.21 2.78
2900 3606 1.746787 AGAAAAACCGCGTGGAAAAGT 59.253 42.857 24.59 2.04 39.21 2.66
2902 3608 2.943449 AAGAAAAACCGCGTGGAAAA 57.057 40.000 24.59 0.00 39.21 2.29
2904 3610 2.943449 AAAAGAAAAACCGCGTGGAA 57.057 40.000 24.59 0.00 39.21 3.53
2905 3611 2.943449 AAAAAGAAAAACCGCGTGGA 57.057 40.000 24.59 0.00 39.21 4.02
2930 3636 2.825861 ATTCTGCAACAAGGCCTTTG 57.174 45.000 17.61 14.40 42.68 2.77
2931 3637 3.843893 AAATTCTGCAACAAGGCCTTT 57.156 38.095 17.61 4.68 0.00 3.11
2932 3638 3.843893 AAAATTCTGCAACAAGGCCTT 57.156 38.095 13.78 13.78 0.00 4.35
2933 3639 3.843893 AAAAATTCTGCAACAAGGCCT 57.156 38.095 0.00 0.00 0.00 5.19
2951 3657 4.071875 GCAAAACCTTTGTTGCGAAAAA 57.928 36.364 1.45 0.00 40.62 1.94
2952 3658 3.731274 GCAAAACCTTTGTTGCGAAAA 57.269 38.095 1.45 0.00 40.62 2.29
2958 3664 0.929615 CGGCAGCAAAACCTTTGTTG 59.070 50.000 10.52 10.52 34.13 3.33
2959 3665 0.820871 TCGGCAGCAAAACCTTTGTT 59.179 45.000 0.00 0.00 35.82 2.83
2960 3666 0.820871 TTCGGCAGCAAAACCTTTGT 59.179 45.000 0.00 0.00 0.00 2.83
2961 3667 1.933247 TTTCGGCAGCAAAACCTTTG 58.067 45.000 0.00 0.00 0.00 2.77
2962 3668 2.908688 ATTTCGGCAGCAAAACCTTT 57.091 40.000 0.00 0.00 0.00 3.11
2963 3669 2.908688 AATTTCGGCAGCAAAACCTT 57.091 40.000 0.00 0.00 0.00 3.50
2964 3670 2.908688 AAATTTCGGCAGCAAAACCT 57.091 40.000 0.00 0.00 0.00 3.50
2965 3671 5.411083 TTTTAAATTTCGGCAGCAAAACC 57.589 34.783 0.00 0.00 0.00 3.27
2966 3672 6.410625 CAGTTTTTAAATTTCGGCAGCAAAAC 59.589 34.615 0.00 0.00 34.51 2.43
2967 3673 6.313905 TCAGTTTTTAAATTTCGGCAGCAAAA 59.686 30.769 0.00 0.00 0.00 2.44
2968 3674 5.812642 TCAGTTTTTAAATTTCGGCAGCAAA 59.187 32.000 0.00 0.00 0.00 3.68
2969 3675 5.352284 TCAGTTTTTAAATTTCGGCAGCAA 58.648 33.333 0.00 0.00 0.00 3.91
2970 3676 4.938080 TCAGTTTTTAAATTTCGGCAGCA 58.062 34.783 0.00 0.00 0.00 4.41
2971 3677 7.027161 TCTATCAGTTTTTAAATTTCGGCAGC 58.973 34.615 0.00 0.00 0.00 5.25
2972 3678 8.964420 TTCTATCAGTTTTTAAATTTCGGCAG 57.036 30.769 0.00 0.00 0.00 4.85
2973 3679 9.567848 GATTCTATCAGTTTTTAAATTTCGGCA 57.432 29.630 0.00 0.00 0.00 5.69
2974 3680 9.020813 GGATTCTATCAGTTTTTAAATTTCGGC 57.979 33.333 0.00 0.00 0.00 5.54
2983 3689 9.691362 GTTGCAAAAGGATTCTATCAGTTTTTA 57.309 29.630 0.00 0.00 29.61 1.52
2984 3690 8.203485 TGTTGCAAAAGGATTCTATCAGTTTTT 58.797 29.630 0.00 0.00 29.61 1.94
2985 3691 7.725251 TGTTGCAAAAGGATTCTATCAGTTTT 58.275 30.769 0.00 0.00 31.18 2.43
2986 3692 7.288810 TGTTGCAAAAGGATTCTATCAGTTT 57.711 32.000 0.00 0.00 0.00 2.66
2987 3693 6.571150 GCTGTTGCAAAAGGATTCTATCAGTT 60.571 38.462 18.35 0.00 39.41 3.16
2988 3694 5.105997 GCTGTTGCAAAAGGATTCTATCAGT 60.106 40.000 18.35 0.00 39.41 3.41
2989 3695 5.338365 GCTGTTGCAAAAGGATTCTATCAG 58.662 41.667 18.35 9.44 39.41 2.90
2990 3696 4.158394 GGCTGTTGCAAAAGGATTCTATCA 59.842 41.667 18.35 0.00 41.91 2.15
2991 3697 4.440663 GGGCTGTTGCAAAAGGATTCTATC 60.441 45.833 18.35 0.00 41.91 2.08
2992 3698 3.448660 GGGCTGTTGCAAAAGGATTCTAT 59.551 43.478 18.35 0.00 41.91 1.98
2993 3699 2.825532 GGGCTGTTGCAAAAGGATTCTA 59.174 45.455 18.35 0.00 41.91 2.10
2994 3700 1.620323 GGGCTGTTGCAAAAGGATTCT 59.380 47.619 18.35 0.00 41.91 2.40
2995 3701 1.669795 CGGGCTGTTGCAAAAGGATTC 60.670 52.381 18.35 1.20 41.91 2.52
2996 3702 0.318120 CGGGCTGTTGCAAAAGGATT 59.682 50.000 18.35 0.00 41.91 3.01
2997 3703 0.827507 ACGGGCTGTTGCAAAAGGAT 60.828 50.000 18.35 0.00 41.91 3.24
2998 3704 1.454847 ACGGGCTGTTGCAAAAGGA 60.455 52.632 18.35 0.00 41.91 3.36
2999 3705 1.300080 CACGGGCTGTTGCAAAAGG 60.300 57.895 18.35 4.39 41.91 3.11
3000 3706 0.179113 AACACGGGCTGTTGCAAAAG 60.179 50.000 12.62 12.62 41.87 2.27
3001 3707 0.247736 AAACACGGGCTGTTGCAAAA 59.752 45.000 0.00 0.00 42.70 2.44
3002 3708 0.459237 CAAACACGGGCTGTTGCAAA 60.459 50.000 0.00 0.00 42.70 3.68
3003 3709 1.140589 CAAACACGGGCTGTTGCAA 59.859 52.632 0.00 0.00 42.70 4.08
3004 3710 0.748367 TACAAACACGGGCTGTTGCA 60.748 50.000 0.00 0.00 42.70 4.08
3005 3711 0.040425 CTACAAACACGGGCTGTTGC 60.040 55.000 0.00 0.00 42.70 4.17
3006 3712 0.040425 GCTACAAACACGGGCTGTTG 60.040 55.000 0.00 0.00 42.70 3.33
3007 3713 0.464735 TGCTACAAACACGGGCTGTT 60.465 50.000 0.00 0.00 45.68 3.16
3008 3714 0.250727 ATGCTACAAACACGGGCTGT 60.251 50.000 0.00 0.00 32.89 4.40
3009 3715 0.168788 CATGCTACAAACACGGGCTG 59.831 55.000 0.00 0.00 0.00 4.85
3010 3716 0.960364 CCATGCTACAAACACGGGCT 60.960 55.000 0.00 0.00 0.00 5.19
3011 3717 1.506262 CCATGCTACAAACACGGGC 59.494 57.895 0.00 0.00 0.00 6.13
3012 3718 0.608035 ACCCATGCTACAAACACGGG 60.608 55.000 0.00 0.00 38.23 5.28
3013 3719 0.521291 CACCCATGCTACAAACACGG 59.479 55.000 0.00 0.00 0.00 4.94
3014 3720 1.234821 ACACCCATGCTACAAACACG 58.765 50.000 0.00 0.00 0.00 4.49
3015 3721 2.288152 CCAACACCCATGCTACAAACAC 60.288 50.000 0.00 0.00 0.00 3.32
3016 3722 1.959985 CCAACACCCATGCTACAAACA 59.040 47.619 0.00 0.00 0.00 2.83
3017 3723 1.960689 ACCAACACCCATGCTACAAAC 59.039 47.619 0.00 0.00 0.00 2.93
3018 3724 1.959985 CACCAACACCCATGCTACAAA 59.040 47.619 0.00 0.00 0.00 2.83
3019 3725 1.133637 ACACCAACACCCATGCTACAA 60.134 47.619 0.00 0.00 0.00 2.41
3020 3726 0.476338 ACACCAACACCCATGCTACA 59.524 50.000 0.00 0.00 0.00 2.74
3021 3727 1.165270 GACACCAACACCCATGCTAC 58.835 55.000 0.00 0.00 0.00 3.58
3022 3728 0.321210 CGACACCAACACCCATGCTA 60.321 55.000 0.00 0.00 0.00 3.49
3023 3729 1.600636 CGACACCAACACCCATGCT 60.601 57.895 0.00 0.00 0.00 3.79
3024 3730 2.953821 CGACACCAACACCCATGC 59.046 61.111 0.00 0.00 0.00 4.06
3025 3731 1.243342 ATGCGACACCAACACCCATG 61.243 55.000 0.00 0.00 0.00 3.66
3026 3732 1.074775 ATGCGACACCAACACCCAT 59.925 52.632 0.00 0.00 0.00 4.00
3027 3733 1.896183 CATGCGACACCAACACCCA 60.896 57.895 0.00 0.00 0.00 4.51
3028 3734 2.625823 CCATGCGACACCAACACCC 61.626 63.158 0.00 0.00 0.00 4.61
3029 3735 2.953821 CCATGCGACACCAACACC 59.046 61.111 0.00 0.00 0.00 4.16
3030 3736 2.255252 GCCATGCGACACCAACAC 59.745 61.111 0.00 0.00 0.00 3.32
3031 3737 2.203266 TGCCATGCGACACCAACA 60.203 55.556 0.00 0.00 0.00 3.33
3032 3738 2.562912 CTGCCATGCGACACCAAC 59.437 61.111 0.00 0.00 0.00 3.77
3033 3739 3.364441 GCTGCCATGCGACACCAA 61.364 61.111 0.00 0.00 0.00 3.67
3047 3753 2.666862 TACAAACACGGGCGGCTG 60.667 61.111 17.49 17.49 0.00 4.85
3048 3754 2.358247 CTACAAACACGGGCGGCT 60.358 61.111 9.56 0.00 0.00 5.52
3049 3755 1.908066 CTTCTACAAACACGGGCGGC 61.908 60.000 0.00 0.00 0.00 6.53
3050 3756 0.320073 TCTTCTACAAACACGGGCGG 60.320 55.000 0.00 0.00 0.00 6.13
3051 3757 1.459592 CTTCTTCTACAAACACGGGCG 59.540 52.381 0.00 0.00 0.00 6.13
3052 3758 1.804748 CCTTCTTCTACAAACACGGGC 59.195 52.381 0.00 0.00 0.00 6.13
3053 3759 3.121738 ACCTTCTTCTACAAACACGGG 57.878 47.619 0.00 0.00 0.00 5.28
3054 3760 3.303791 GCAACCTTCTTCTACAAACACGG 60.304 47.826 0.00 0.00 0.00 4.94
3055 3761 3.311322 TGCAACCTTCTTCTACAAACACG 59.689 43.478 0.00 0.00 0.00 4.49
3056 3762 4.574828 TCTGCAACCTTCTTCTACAAACAC 59.425 41.667 0.00 0.00 0.00 3.32
3057 3763 4.574828 GTCTGCAACCTTCTTCTACAAACA 59.425 41.667 0.00 0.00 0.00 2.83
3058 3764 4.816925 AGTCTGCAACCTTCTTCTACAAAC 59.183 41.667 0.00 0.00 0.00 2.93
3059 3765 4.816385 CAGTCTGCAACCTTCTTCTACAAA 59.184 41.667 0.00 0.00 0.00 2.83
3060 3766 4.141711 ACAGTCTGCAACCTTCTTCTACAA 60.142 41.667 0.00 0.00 0.00 2.41
3061 3767 3.388024 ACAGTCTGCAACCTTCTTCTACA 59.612 43.478 0.00 0.00 0.00 2.74
3062 3768 3.996480 ACAGTCTGCAACCTTCTTCTAC 58.004 45.455 0.00 0.00 0.00 2.59
3063 3769 5.304614 ACTTACAGTCTGCAACCTTCTTCTA 59.695 40.000 0.00 0.00 0.00 2.10
3064 3770 4.101741 ACTTACAGTCTGCAACCTTCTTCT 59.898 41.667 0.00 0.00 0.00 2.85
3065 3771 4.381411 ACTTACAGTCTGCAACCTTCTTC 58.619 43.478 0.00 0.00 0.00 2.87
3068 3774 3.680458 GCTACTTACAGTCTGCAACCTTC 59.320 47.826 0.00 0.00 31.25 3.46
3075 3781 3.246619 GAGTGTGCTACTTACAGTCTGC 58.753 50.000 0.00 0.00 42.47 4.26
3081 3787 4.332828 TGCTAGAGAGTGTGCTACTTACA 58.667 43.478 0.00 0.00 40.53 2.41
3116 4233 1.332375 GAGCAAACAACGCAACCAGTA 59.668 47.619 0.00 0.00 0.00 2.74
3145 4262 8.036575 AGATGCATTGTGTAAATTGTAAATGCT 58.963 29.630 16.40 5.25 46.25 3.79
3159 4276 5.183904 GGAGGAAACTTAAGATGCATTGTGT 59.816 40.000 10.09 0.00 44.43 3.72
3184 4301 7.395190 TCATCTGCAACACAAAAATATAGCT 57.605 32.000 0.00 0.00 0.00 3.32
3237 4354 8.817876 ACTTCTACCTCTAGATTAAGTTTTGCT 58.182 33.333 0.00 0.00 0.00 3.91
3238 4355 9.438228 AACTTCTACCTCTAGATTAAGTTTTGC 57.562 33.333 0.00 0.00 29.01 3.68
3243 4360 9.978336 ACACTAACTTCTACCTCTAGATTAAGT 57.022 33.333 0.00 0.00 0.00 2.24
3245 4362 8.684520 GCACACTAACTTCTACCTCTAGATTAA 58.315 37.037 0.00 0.00 0.00 1.40
3246 4363 7.012138 CGCACACTAACTTCTACCTCTAGATTA 59.988 40.741 0.00 0.00 0.00 1.75
3247 4364 6.183360 CGCACACTAACTTCTACCTCTAGATT 60.183 42.308 0.00 0.00 0.00 2.40
3248 4365 5.297278 CGCACACTAACTTCTACCTCTAGAT 59.703 44.000 0.00 0.00 0.00 1.98
3290 4454 5.063880 ACGCCAAAGTAATTCTGAAGAAGT 58.936 37.500 0.00 0.00 37.48 3.01
3304 4468 0.464735 TGCCTGTGTTACGCCAAAGT 60.465 50.000 0.00 0.00 0.00 2.66
3310 4475 0.591170 ATGTGTTGCCTGTGTTACGC 59.409 50.000 0.00 0.00 0.00 4.42
3318 4483 1.001048 CTGTGTGGAATGTGTTGCCTG 60.001 52.381 0.00 0.00 0.00 4.85
3322 4487 5.173673 CGAAATTTCTGTGTGGAATGTGTTG 59.826 40.000 15.92 0.00 0.00 3.33
3325 4490 5.107109 TCGAAATTTCTGTGTGGAATGTG 57.893 39.130 15.92 0.00 0.00 3.21
3333 4498 7.026631 TGAGATTTGTTCGAAATTTCTGTGT 57.973 32.000 15.92 0.00 0.00 3.72
3363 4528 3.244181 CCAGGACAAATTGAAAACCAGGG 60.244 47.826 0.00 1.01 0.00 4.45
3364 4529 3.993920 CCAGGACAAATTGAAAACCAGG 58.006 45.455 0.00 0.84 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.