Multiple sequence alignment - TraesCS7A01G018100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G018100 chr7A 100.000 2757 0 0 1 2757 7701377 7704133 0.000000e+00 5092.0
1 TraesCS7A01G018100 chr7A 100.000 312 0 0 3092 3403 7704468 7704779 8.190000e-161 577.0
2 TraesCS7A01G018100 chr4A 92.785 1871 105 10 902 2756 733560357 733558501 0.000000e+00 2680.0
3 TraesCS7A01G018100 chr4A 85.420 631 51 14 306 903 733563035 733562413 4.820000e-173 617.0
4 TraesCS7A01G018100 chr4A 96.117 309 11 1 3095 3402 733540612 733540304 1.410000e-138 503.0
5 TraesCS7A01G018100 chr7D 94.357 1081 57 3 1521 2597 6753944 6755024 0.000000e+00 1655.0
6 TraesCS7A01G018100 chr7D 92.068 643 47 4 902 1541 6750220 6750861 0.000000e+00 902.0
7 TraesCS7A01G018100 chr7D 85.366 779 75 18 158 903 6746388 6747160 0.000000e+00 771.0
8 TraesCS7A01G018100 chr6D 76.155 952 187 28 1599 2535 9907486 9906560 6.650000e-127 464.0
9 TraesCS7A01G018100 chr2B 94.872 39 2 0 3203 3241 720909229 720909191 1.020000e-05 62.1
10 TraesCS7A01G018100 chr6B 97.143 35 1 0 3203 3237 35231462 35231496 3.670000e-05 60.2
11 TraesCS7A01G018100 chr3A 100.000 29 0 0 616 644 168836723 168836751 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G018100 chr7A 7701377 7704779 3402 False 2834.500000 5092 100.0000 1 3403 2 chr7A.!!$F1 3402
1 TraesCS7A01G018100 chr4A 733558501 733563035 4534 True 1648.500000 2680 89.1025 306 2756 2 chr4A.!!$R2 2450
2 TraesCS7A01G018100 chr7D 6746388 6755024 8636 False 1109.333333 1655 90.5970 158 2597 3 chr7D.!!$F1 2439
3 TraesCS7A01G018100 chr6D 9906560 9907486 926 True 464.000000 464 76.1550 1599 2535 1 chr6D.!!$R1 936

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
414 422 0.038801 GCTTTTGTGGAGCAGAAGGC 60.039 55.0 0.0 0.0 39.07 4.35 F
1207 4720 0.037232 GGCTAGGTTGAAGACTGCGT 60.037 55.0 0.0 0.0 0.00 5.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1281 4794 0.403655 TGCCCTTACCATTGCAGTCA 59.596 50.0 0.0 0.0 0.00 3.41 R
3200 9843 0.614812 GGGTCACCCCGCTAGTTTTA 59.385 55.0 0.0 0.0 42.41 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.326747 AGCTAAACTTGCTGACTAACCG 58.673 45.455 0.00 0.00 39.56 4.44
30 31 3.006537 AGCTAAACTTGCTGACTAACCGA 59.993 43.478 0.00 0.00 39.56 4.69
31 32 3.933332 GCTAAACTTGCTGACTAACCGAT 59.067 43.478 0.00 0.00 0.00 4.18
32 33 4.033014 GCTAAACTTGCTGACTAACCGATC 59.967 45.833 0.00 0.00 0.00 3.69
33 34 3.963428 AACTTGCTGACTAACCGATCT 57.037 42.857 0.00 0.00 0.00 2.75
34 35 3.238108 ACTTGCTGACTAACCGATCTG 57.762 47.619 0.00 0.00 0.00 2.90
35 36 2.826128 ACTTGCTGACTAACCGATCTGA 59.174 45.455 0.00 0.00 0.00 3.27
36 37 3.258372 ACTTGCTGACTAACCGATCTGAA 59.742 43.478 0.00 0.00 0.00 3.02
37 38 3.232213 TGCTGACTAACCGATCTGAAC 57.768 47.619 0.00 0.00 0.00 3.18
38 39 2.560981 TGCTGACTAACCGATCTGAACA 59.439 45.455 0.00 0.00 0.00 3.18
39 40 3.006430 TGCTGACTAACCGATCTGAACAA 59.994 43.478 0.00 0.00 0.00 2.83
40 41 4.184629 GCTGACTAACCGATCTGAACAAT 58.815 43.478 0.00 0.00 0.00 2.71
41 42 5.105513 TGCTGACTAACCGATCTGAACAATA 60.106 40.000 0.00 0.00 0.00 1.90
42 43 5.810587 GCTGACTAACCGATCTGAACAATAA 59.189 40.000 0.00 0.00 0.00 1.40
43 44 6.237861 GCTGACTAACCGATCTGAACAATAAC 60.238 42.308 0.00 0.00 0.00 1.89
44 45 6.693466 TGACTAACCGATCTGAACAATAACA 58.307 36.000 0.00 0.00 0.00 2.41
45 46 6.588756 TGACTAACCGATCTGAACAATAACAC 59.411 38.462 0.00 0.00 0.00 3.32
46 47 6.460781 ACTAACCGATCTGAACAATAACACA 58.539 36.000 0.00 0.00 0.00 3.72
47 48 6.932400 ACTAACCGATCTGAACAATAACACAA 59.068 34.615 0.00 0.00 0.00 3.33
48 49 6.627395 AACCGATCTGAACAATAACACAAA 57.373 33.333 0.00 0.00 0.00 2.83
49 50 5.997385 ACCGATCTGAACAATAACACAAAC 58.003 37.500 0.00 0.00 0.00 2.93
50 51 5.529430 ACCGATCTGAACAATAACACAAACA 59.471 36.000 0.00 0.00 0.00 2.83
51 52 6.206634 ACCGATCTGAACAATAACACAAACAT 59.793 34.615 0.00 0.00 0.00 2.71
52 53 6.742718 CCGATCTGAACAATAACACAAACATC 59.257 38.462 0.00 0.00 0.00 3.06
53 54 6.742718 CGATCTGAACAATAACACAAACATCC 59.257 38.462 0.00 0.00 0.00 3.51
54 55 6.951062 TCTGAACAATAACACAAACATCCA 57.049 33.333 0.00 0.00 0.00 3.41
55 56 7.523293 TCTGAACAATAACACAAACATCCAT 57.477 32.000 0.00 0.00 0.00 3.41
56 57 7.592938 TCTGAACAATAACACAAACATCCATC 58.407 34.615 0.00 0.00 0.00 3.51
57 58 7.230309 TCTGAACAATAACACAAACATCCATCA 59.770 33.333 0.00 0.00 0.00 3.07
58 59 7.720442 TGAACAATAACACAAACATCCATCAA 58.280 30.769 0.00 0.00 0.00 2.57
59 60 7.866898 TGAACAATAACACAAACATCCATCAAG 59.133 33.333 0.00 0.00 0.00 3.02
60 61 7.288810 ACAATAACACAAACATCCATCAAGT 57.711 32.000 0.00 0.00 0.00 3.16
61 62 7.147312 ACAATAACACAAACATCCATCAAGTG 58.853 34.615 0.00 0.00 0.00 3.16
69 70 3.277133 CCATCAAGTGGCAACGGG 58.723 61.111 0.00 0.00 42.12 5.28
70 71 2.342650 CCATCAAGTGGCAACGGGG 61.343 63.158 0.00 0.00 42.12 5.73
71 72 2.035626 ATCAAGTGGCAACGGGGG 59.964 61.111 0.00 0.00 42.51 5.40
72 73 2.840753 ATCAAGTGGCAACGGGGGT 61.841 57.895 0.00 0.00 42.51 4.95
73 74 1.493854 ATCAAGTGGCAACGGGGGTA 61.494 55.000 0.00 0.00 42.51 3.69
74 75 1.228306 CAAGTGGCAACGGGGGTAA 60.228 57.895 0.00 0.00 42.51 2.85
75 76 0.824182 CAAGTGGCAACGGGGGTAAA 60.824 55.000 0.00 0.00 42.51 2.01
76 77 0.106116 AAGTGGCAACGGGGGTAAAA 60.106 50.000 0.00 0.00 42.51 1.52
77 78 0.106116 AGTGGCAACGGGGGTAAAAA 60.106 50.000 0.00 0.00 42.51 1.94
78 79 0.315886 GTGGCAACGGGGGTAAAAAG 59.684 55.000 0.00 0.00 42.51 2.27
79 80 0.828343 TGGCAACGGGGGTAAAAAGG 60.828 55.000 0.00 0.00 42.51 3.11
80 81 0.540133 GGCAACGGGGGTAAAAAGGA 60.540 55.000 0.00 0.00 0.00 3.36
81 82 0.885879 GCAACGGGGGTAAAAAGGAG 59.114 55.000 0.00 0.00 0.00 3.69
82 83 1.541379 CAACGGGGGTAAAAAGGAGG 58.459 55.000 0.00 0.00 0.00 4.30
83 84 0.251474 AACGGGGGTAAAAAGGAGGC 60.251 55.000 0.00 0.00 0.00 4.70
84 85 1.138228 ACGGGGGTAAAAAGGAGGCT 61.138 55.000 0.00 0.00 0.00 4.58
85 86 0.393944 CGGGGGTAAAAAGGAGGCTC 60.394 60.000 5.78 5.78 0.00 4.70
86 87 0.702316 GGGGGTAAAAAGGAGGCTCA 59.298 55.000 17.69 0.00 0.00 4.26
87 88 1.076513 GGGGGTAAAAAGGAGGCTCAA 59.923 52.381 17.69 0.00 0.00 3.02
88 89 2.168496 GGGGTAAAAAGGAGGCTCAAC 58.832 52.381 17.69 0.00 0.00 3.18
89 90 2.490168 GGGGTAAAAAGGAGGCTCAACA 60.490 50.000 17.69 0.00 0.00 3.33
90 91 2.820197 GGGTAAAAAGGAGGCTCAACAG 59.180 50.000 17.69 0.00 0.00 3.16
91 92 3.487372 GGTAAAAAGGAGGCTCAACAGT 58.513 45.455 17.69 0.61 0.00 3.55
92 93 3.889538 GGTAAAAAGGAGGCTCAACAGTT 59.110 43.478 17.69 5.94 0.00 3.16
93 94 4.023107 GGTAAAAAGGAGGCTCAACAGTTC 60.023 45.833 17.69 0.00 0.00 3.01
94 95 3.297134 AAAAGGAGGCTCAACAGTTCA 57.703 42.857 17.69 0.00 0.00 3.18
95 96 3.297134 AAAGGAGGCTCAACAGTTCAA 57.703 42.857 17.69 0.00 0.00 2.69
96 97 2.262423 AGGAGGCTCAACAGTTCAAC 57.738 50.000 17.69 0.00 0.00 3.18
97 98 1.771255 AGGAGGCTCAACAGTTCAACT 59.229 47.619 17.69 0.00 0.00 3.16
112 113 6.566197 AGTTCAACTGAAATGAGAACCATC 57.434 37.500 0.00 0.00 39.39 3.51
113 114 6.064060 AGTTCAACTGAAATGAGAACCATCA 58.936 36.000 0.00 0.00 39.39 3.07
114 115 6.547141 AGTTCAACTGAAATGAGAACCATCAA 59.453 34.615 0.00 0.00 39.39 2.57
115 116 6.564709 TCAACTGAAATGAGAACCATCAAG 57.435 37.500 0.00 0.00 33.53 3.02
116 117 6.064060 TCAACTGAAATGAGAACCATCAAGT 58.936 36.000 0.00 0.00 33.53 3.16
117 118 5.954296 ACTGAAATGAGAACCATCAAGTG 57.046 39.130 0.00 0.00 33.53 3.16
126 127 3.766644 CCATCAAGTGGCATCTCGA 57.233 52.632 0.00 0.00 42.12 4.04
127 128 1.579698 CCATCAAGTGGCATCTCGAG 58.420 55.000 5.93 5.93 42.12 4.04
128 129 1.134580 CCATCAAGTGGCATCTCGAGT 60.135 52.381 13.13 0.00 42.12 4.18
129 130 2.200067 CATCAAGTGGCATCTCGAGTC 58.800 52.381 13.13 3.04 0.00 3.36
130 131 1.550327 TCAAGTGGCATCTCGAGTCT 58.450 50.000 13.13 0.00 0.00 3.24
131 132 1.895798 TCAAGTGGCATCTCGAGTCTT 59.104 47.619 13.13 6.20 0.00 3.01
132 133 1.998315 CAAGTGGCATCTCGAGTCTTG 59.002 52.381 13.13 13.37 0.00 3.02
133 134 1.550327 AGTGGCATCTCGAGTCTTGA 58.450 50.000 13.13 0.00 0.00 3.02
134 135 1.895798 AGTGGCATCTCGAGTCTTGAA 59.104 47.619 13.13 0.00 0.00 2.69
135 136 1.996191 GTGGCATCTCGAGTCTTGAAC 59.004 52.381 13.13 7.55 0.00 3.18
136 137 1.895798 TGGCATCTCGAGTCTTGAACT 59.104 47.619 13.13 0.00 42.42 3.01
137 138 2.300152 TGGCATCTCGAGTCTTGAACTT 59.700 45.455 13.13 0.00 38.74 2.66
138 139 3.244215 TGGCATCTCGAGTCTTGAACTTT 60.244 43.478 13.13 0.00 38.74 2.66
139 140 3.369451 GGCATCTCGAGTCTTGAACTTTC 59.631 47.826 13.13 0.00 38.74 2.62
140 141 3.990469 GCATCTCGAGTCTTGAACTTTCA 59.010 43.478 13.13 0.00 38.74 2.69
141 142 4.629200 GCATCTCGAGTCTTGAACTTTCAT 59.371 41.667 13.13 0.00 38.74 2.57
142 143 5.121454 GCATCTCGAGTCTTGAACTTTCATT 59.879 40.000 13.13 0.00 38.74 2.57
143 144 6.348050 GCATCTCGAGTCTTGAACTTTCATTT 60.348 38.462 13.13 0.00 38.74 2.32
144 145 7.148573 GCATCTCGAGTCTTGAACTTTCATTTA 60.149 37.037 13.13 0.00 38.74 1.40
145 146 8.877779 CATCTCGAGTCTTGAACTTTCATTTAT 58.122 33.333 13.13 0.00 38.74 1.40
146 147 8.467402 TCTCGAGTCTTGAACTTTCATTTATC 57.533 34.615 13.13 0.00 38.74 1.75
147 148 8.307483 TCTCGAGTCTTGAACTTTCATTTATCT 58.693 33.333 13.13 0.00 38.74 1.98
148 149 8.833231 TCGAGTCTTGAACTTTCATTTATCTT 57.167 30.769 0.00 0.00 38.74 2.40
149 150 9.273016 TCGAGTCTTGAACTTTCATTTATCTTT 57.727 29.630 0.00 0.00 38.74 2.52
150 151 9.322776 CGAGTCTTGAACTTTCATTTATCTTTG 57.677 33.333 0.00 0.00 38.74 2.77
151 152 9.122613 GAGTCTTGAACTTTCATTTATCTTTGC 57.877 33.333 0.00 0.00 38.74 3.68
152 153 8.084684 AGTCTTGAACTTTCATTTATCTTTGCC 58.915 33.333 0.00 0.00 37.00 4.52
153 154 7.867403 GTCTTGAACTTTCATTTATCTTTGCCA 59.133 33.333 0.00 0.00 37.00 4.92
154 155 8.587608 TCTTGAACTTTCATTTATCTTTGCCAT 58.412 29.630 0.00 0.00 37.00 4.40
155 156 8.537049 TTGAACTTTCATTTATCTTTGCCATG 57.463 30.769 0.00 0.00 37.00 3.66
156 157 7.669427 TGAACTTTCATTTATCTTTGCCATGT 58.331 30.769 0.00 0.00 31.01 3.21
157 158 7.599621 TGAACTTTCATTTATCTTTGCCATGTG 59.400 33.333 0.00 0.00 31.01 3.21
158 159 7.230849 ACTTTCATTTATCTTTGCCATGTGA 57.769 32.000 0.00 0.00 0.00 3.58
159 160 7.844009 ACTTTCATTTATCTTTGCCATGTGAT 58.156 30.769 0.00 0.00 0.00 3.06
160 161 7.762615 ACTTTCATTTATCTTTGCCATGTGATG 59.237 33.333 0.00 0.00 0.00 3.07
179 180 6.375174 TGTGATGGTGTCTAGATCCAAAATTG 59.625 38.462 18.86 0.00 34.80 2.32
185 186 6.314784 GTGTCTAGATCCAAAATTGAAACGG 58.685 40.000 0.00 0.00 0.00 4.44
196 197 5.675684 AAATTGAAACGGGAGCCATTAAT 57.324 34.783 0.00 0.00 0.00 1.40
198 199 6.783708 AATTGAAACGGGAGCCATTAATTA 57.216 33.333 0.00 0.00 0.00 1.40
203 204 2.956333 ACGGGAGCCATTAATTAAAGCC 59.044 45.455 16.03 9.96 0.00 4.35
214 215 3.359695 AATTAAAGCCCGGAACTAGCA 57.640 42.857 0.73 0.00 0.00 3.49
218 219 0.905337 AAGCCCGGAACTAGCAGTCT 60.905 55.000 0.73 0.00 0.00 3.24
219 220 1.153549 GCCCGGAACTAGCAGTCTG 60.154 63.158 0.73 0.00 0.00 3.51
220 221 1.889530 GCCCGGAACTAGCAGTCTGT 61.890 60.000 0.73 0.00 0.00 3.41
221 222 0.608640 CCCGGAACTAGCAGTCTGTT 59.391 55.000 0.73 0.00 0.00 3.16
222 223 1.002087 CCCGGAACTAGCAGTCTGTTT 59.998 52.381 0.73 0.00 0.00 2.83
233 234 8.732746 ACTAGCAGTCTGTTTCTTTCTTTTTA 57.267 30.769 0.93 0.00 0.00 1.52
268 269 6.318900 CCCCTTAATTTCAGCTAGTGGTAAAG 59.681 42.308 0.00 0.00 0.00 1.85
274 275 4.595762 TCAGCTAGTGGTAAAGTTCGTT 57.404 40.909 0.00 0.00 0.00 3.85
277 278 4.150098 CAGCTAGTGGTAAAGTTCGTTGTC 59.850 45.833 0.00 0.00 0.00 3.18
304 305 2.743636 TCTTCCGTGATGAACTGTCC 57.256 50.000 0.00 0.00 0.00 4.02
328 329 4.261447 GCACCGGTTCTACATTTGTTTCTT 60.261 41.667 2.97 0.00 0.00 2.52
342 343 4.229304 TGTTTCTTTGTGGACTGAGGAA 57.771 40.909 0.00 0.00 0.00 3.36
364 372 3.657727 ACTGAGAAGGAAGGGGATTTCAA 59.342 43.478 0.00 0.00 0.00 2.69
372 380 2.808906 AGGGGATTTCAACTAGTGGC 57.191 50.000 0.00 0.00 0.00 5.01
376 384 3.010420 GGGATTTCAACTAGTGGCAGTC 58.990 50.000 0.00 0.00 0.00 3.51
388 396 3.173240 GCAGTCCGTCGCTTCGTC 61.173 66.667 0.00 0.00 0.00 4.20
406 414 2.268076 CGGTGGGGCTTTTGTGGAG 61.268 63.158 0.00 0.00 0.00 3.86
409 417 1.531365 TGGGGCTTTTGTGGAGCAG 60.531 57.895 0.00 0.00 41.89 4.24
414 422 0.038801 GCTTTTGTGGAGCAGAAGGC 60.039 55.000 0.00 0.00 39.07 4.35
428 436 2.740981 CAGAAGGCTTTGTAGAGCTGTG 59.259 50.000 0.00 0.00 42.32 3.66
446 454 4.601019 CTGTGTGTCTGTTTGTTTGATCC 58.399 43.478 0.00 0.00 0.00 3.36
453 461 7.920151 TGTGTCTGTTTGTTTGATCCTTTAATG 59.080 33.333 0.00 0.00 0.00 1.90
457 467 8.690884 TCTGTTTGTTTGATCCTTTAATGTGAA 58.309 29.630 0.00 0.00 0.00 3.18
458 468 9.311916 CTGTTTGTTTGATCCTTTAATGTGAAA 57.688 29.630 0.00 0.00 0.00 2.69
490 503 7.012515 TCTCTACTCTGTTCAATCGATAAGGAC 59.987 40.741 0.00 0.00 0.00 3.85
504 517 4.378046 CGATAAGGACAAAAAGGTTCGTGG 60.378 45.833 0.00 0.00 0.00 4.94
514 527 1.112315 AGGTTCGTGGCCATTTGCAA 61.112 50.000 9.72 0.00 43.89 4.08
582 617 5.925509 TGTTGGCCTCTATAATGAACTACC 58.074 41.667 3.32 0.00 0.00 3.18
584 619 3.908103 TGGCCTCTATAATGAACTACCCC 59.092 47.826 3.32 0.00 0.00 4.95
585 620 4.168883 GGCCTCTATAATGAACTACCCCT 58.831 47.826 0.00 0.00 0.00 4.79
586 621 4.597940 GGCCTCTATAATGAACTACCCCTT 59.402 45.833 0.00 0.00 0.00 3.95
592 627 7.313731 TCTATAATGAACTACCCCTTCCATCT 58.686 38.462 0.00 0.00 0.00 2.90
656 691 9.995003 CAGAGAGAGTATAATATTTGAAAGGCT 57.005 33.333 0.00 0.00 0.00 4.58
657 692 9.995003 AGAGAGAGTATAATATTTGAAAGGCTG 57.005 33.333 0.00 0.00 0.00 4.85
681 716 4.195416 CCTCCAAGGAGATGCTTACTTTC 58.805 47.826 17.57 0.00 44.53 2.62
683 718 5.495640 CTCCAAGGAGATGCTTACTTTCTT 58.504 41.667 10.66 0.00 44.53 2.52
684 719 5.880901 TCCAAGGAGATGCTTACTTTCTTT 58.119 37.500 0.00 0.00 0.00 2.52
688 723 8.239998 CCAAGGAGATGCTTACTTTCTTTTAAG 58.760 37.037 0.00 0.00 0.00 1.85
689 724 9.003658 CAAGGAGATGCTTACTTTCTTTTAAGA 57.996 33.333 0.00 0.00 0.00 2.10
690 725 9.746457 AAGGAGATGCTTACTTTCTTTTAAGAT 57.254 29.630 0.00 0.00 34.49 2.40
691 726 9.746457 AGGAGATGCTTACTTTCTTTTAAGATT 57.254 29.630 0.00 0.00 34.49 2.40
733 768 1.069227 GCCAACCATTCGAACTCACAC 60.069 52.381 0.00 0.00 0.00 3.82
735 770 1.194547 CAACCATTCGAACTCACACGG 59.805 52.381 0.00 0.00 0.00 4.94
840 875 2.169330 GAAGAGACGAGGGTGGTTAGT 58.831 52.381 0.00 0.00 0.00 2.24
866 901 6.349300 AGGTGTAGTGAGTAAAATATGCCAG 58.651 40.000 0.00 0.00 0.00 4.85
867 902 5.527582 GGTGTAGTGAGTAAAATATGCCAGG 59.472 44.000 0.00 0.00 0.00 4.45
940 4453 1.377725 CTGCTCGGTGCCCATTTCT 60.378 57.895 0.00 0.00 42.00 2.52
1068 4581 4.742201 CCGGCCTCAGACACACCG 62.742 72.222 0.00 0.00 43.44 4.94
1146 4659 1.471676 CCACTCATCCACTTCTACCGC 60.472 57.143 0.00 0.00 0.00 5.68
1168 4681 2.544277 CCTTGTGTCGACGAAACCAGTA 60.544 50.000 15.44 0.00 0.00 2.74
1174 4687 1.142474 CGACGAAACCAGTACCCAAC 58.858 55.000 0.00 0.00 0.00 3.77
1189 4702 1.333619 CCCAACACTTCTTTGACGTGG 59.666 52.381 0.00 0.00 36.36 4.94
1207 4720 0.037232 GGCTAGGTTGAAGACTGCGT 60.037 55.000 0.00 0.00 0.00 5.24
1210 4723 2.866460 GCTAGGTTGAAGACTGCGTTGA 60.866 50.000 0.00 0.00 0.00 3.18
1235 4748 2.387952 CCCTTGTGGCCTTCTACCT 58.612 57.895 3.32 0.00 0.00 3.08
1281 4794 0.032813 CCCATGGCAGGTTGGAGATT 60.033 55.000 6.09 0.00 34.81 2.40
1315 4828 1.074405 AGGGCATGCTCTTTCTTGTGA 59.926 47.619 16.33 0.00 0.00 3.58
1344 4857 4.021104 TCTCGTCTCACCATCAATGACTTT 60.021 41.667 0.00 0.00 0.00 2.66
1353 4866 3.484229 CCATCAATGACTTTCGCGACTTC 60.484 47.826 9.15 6.03 0.00 3.01
1363 4876 1.014044 TCGCGACTTCAAGCCATCAC 61.014 55.000 3.71 0.00 0.00 3.06
1416 4929 2.482142 GGACGACTCATCCAACATCCTC 60.482 54.545 0.00 0.00 36.15 3.71
1479 4998 5.429957 AAGAGCTAAAGCACACAAAGAAG 57.570 39.130 4.54 0.00 45.16 2.85
1504 5028 0.114954 TCAATCCAAGCAGGCCCTTT 59.885 50.000 0.00 0.00 37.29 3.11
1518 5042 4.811024 CAGGCCCTTTGTTTTTCTTTCTTC 59.189 41.667 0.00 0.00 0.00 2.87
1519 5043 4.716784 AGGCCCTTTGTTTTTCTTTCTTCT 59.283 37.500 0.00 0.00 0.00 2.85
1531 8160 9.317936 GTTTTTCTTTCTTCTCACCAAATCAAT 57.682 29.630 0.00 0.00 0.00 2.57
1568 8200 6.738114 GCACAAACATGCTTACATATGGTAT 58.262 36.000 7.80 0.00 42.62 2.73
1590 8222 5.956068 TCAACAAGCAAGTAATATGTGCA 57.044 34.783 0.00 0.00 40.83 4.57
1619 8251 7.401246 TGCAAATCCATATATGTATGCAGGTA 58.599 34.615 19.46 5.84 37.06 3.08
1688 8320 2.230940 CGCTATGGACGGAACTGCG 61.231 63.158 0.00 0.00 36.19 5.18
1772 8404 2.267961 CCCTACCTTGACCGCACC 59.732 66.667 0.00 0.00 0.00 5.01
1937 8575 2.907910 CTCTTAAGCACATGTGTGGC 57.092 50.000 26.01 12.88 45.72 5.01
2033 8671 3.807538 GACTCCACGACGCGCCTA 61.808 66.667 5.73 0.00 0.00 3.93
2165 8803 1.522092 CAATCTAGCCCAGGTCGCA 59.478 57.895 0.00 0.00 0.00 5.10
2197 8835 2.262915 CACTCTCAGCCGGGTGAC 59.737 66.667 31.67 0.00 32.12 3.67
2465 9108 2.141517 CCATAGAGGCTGCAATTCTCG 58.858 52.381 0.50 0.00 33.16 4.04
2534 9177 1.641577 CAAGTTCTAGCCGGCTGTAC 58.358 55.000 38.98 29.27 0.00 2.90
2536 9179 0.531200 AGTTCTAGCCGGCTGTACAC 59.469 55.000 38.98 26.58 0.00 2.90
2543 9186 2.126071 CGGCTGTACACACCTCCG 60.126 66.667 8.23 5.35 33.97 4.63
2556 9199 2.298163 ACACCTCCGTTATTTCTGTCGT 59.702 45.455 0.00 0.00 0.00 4.34
2663 9306 1.074566 GCCAAGGGAGATAATCTGGGG 59.925 57.143 0.00 0.00 0.00 4.96
2675 9318 7.202102 GGAGATAATCTGGGGTGTAAATGTAGT 60.202 40.741 0.00 0.00 0.00 2.73
2756 9399 1.342074 TGCCGGCTAGCTAGATTGAT 58.658 50.000 29.70 0.00 0.00 2.57
3116 9759 8.846943 ATATTGTTCTGACATTTGTGTGTAGA 57.153 30.769 0.00 0.00 35.29 2.59
3117 9760 7.750229 ATTGTTCTGACATTTGTGTGTAGAT 57.250 32.000 0.00 0.00 35.29 1.98
3118 9761 6.785488 TGTTCTGACATTTGTGTGTAGATC 57.215 37.500 0.00 0.00 31.16 2.75
3119 9762 5.405269 TGTTCTGACATTTGTGTGTAGATCG 59.595 40.000 0.00 0.00 31.16 3.69
3120 9763 4.494484 TCTGACATTTGTGTGTAGATCGG 58.506 43.478 0.00 0.00 31.16 4.18
3121 9764 3.000041 TGACATTTGTGTGTAGATCGGC 59.000 45.455 0.00 0.00 31.16 5.54
3122 9765 3.000041 GACATTTGTGTGTAGATCGGCA 59.000 45.455 0.00 0.00 31.16 5.69
3123 9766 3.407698 ACATTTGTGTGTAGATCGGCAA 58.592 40.909 0.00 0.00 0.00 4.52
3124 9767 3.188460 ACATTTGTGTGTAGATCGGCAAC 59.812 43.478 0.00 0.00 0.00 4.17
3125 9768 2.831685 TTGTGTGTAGATCGGCAACT 57.168 45.000 0.00 0.00 0.00 3.16
3126 9769 3.945981 TTGTGTGTAGATCGGCAACTA 57.054 42.857 0.00 0.00 0.00 2.24
3127 9770 3.503827 TGTGTGTAGATCGGCAACTAG 57.496 47.619 0.00 0.00 0.00 2.57
3128 9771 2.194271 GTGTGTAGATCGGCAACTAGC 58.806 52.381 0.00 0.00 44.65 3.42
3129 9772 2.100197 TGTGTAGATCGGCAACTAGCT 58.900 47.619 0.00 0.00 44.79 3.32
3130 9773 3.066342 GTGTGTAGATCGGCAACTAGCTA 59.934 47.826 0.00 0.00 44.79 3.32
3131 9774 3.697542 TGTGTAGATCGGCAACTAGCTAA 59.302 43.478 0.00 0.00 44.79 3.09
3132 9775 4.043073 GTGTAGATCGGCAACTAGCTAAC 58.957 47.826 0.00 0.00 44.79 2.34
3133 9776 2.892784 AGATCGGCAACTAGCTAACC 57.107 50.000 0.00 0.00 44.79 2.85
3134 9777 1.067212 AGATCGGCAACTAGCTAACCG 59.933 52.381 14.68 14.68 44.79 4.44
3136 9779 3.661745 CGGCAACTAGCTAACCGAT 57.338 52.632 15.41 0.00 46.71 4.18
3137 9780 2.787601 CGGCAACTAGCTAACCGATA 57.212 50.000 15.41 0.00 46.71 2.92
3138 9781 2.391879 CGGCAACTAGCTAACCGATAC 58.608 52.381 15.41 0.00 46.71 2.24
3139 9782 2.034305 CGGCAACTAGCTAACCGATACT 59.966 50.000 15.41 0.00 46.71 2.12
3140 9783 3.490419 CGGCAACTAGCTAACCGATACTT 60.490 47.826 15.41 0.00 46.71 2.24
3141 9784 4.261322 CGGCAACTAGCTAACCGATACTTA 60.261 45.833 15.41 0.00 46.71 2.24
3142 9785 5.594926 GGCAACTAGCTAACCGATACTTAA 58.405 41.667 0.00 0.00 44.79 1.85
3143 9786 5.461407 GGCAACTAGCTAACCGATACTTAAC 59.539 44.000 0.00 0.00 44.79 2.01
3144 9787 6.271566 GCAACTAGCTAACCGATACTTAACT 58.728 40.000 0.00 0.00 41.15 2.24
3145 9788 6.755607 GCAACTAGCTAACCGATACTTAACTT 59.244 38.462 0.00 0.00 41.15 2.66
3146 9789 7.277319 GCAACTAGCTAACCGATACTTAACTTT 59.723 37.037 0.00 0.00 41.15 2.66
3147 9790 9.793252 CAACTAGCTAACCGATACTTAACTTTA 57.207 33.333 0.00 0.00 0.00 1.85
3173 9816 9.453572 AATATATGTCCATATGTCCACATTGAC 57.546 33.333 14.18 7.28 37.76 3.18
3174 9817 3.884895 TGTCCATATGTCCACATTGACC 58.115 45.455 1.24 0.00 37.76 4.02
3175 9818 3.523157 TGTCCATATGTCCACATTGACCT 59.477 43.478 1.24 0.00 37.76 3.85
3176 9819 4.018506 TGTCCATATGTCCACATTGACCTT 60.019 41.667 1.24 0.00 37.76 3.50
3177 9820 4.336433 GTCCATATGTCCACATTGACCTTG 59.664 45.833 1.24 0.00 37.76 3.61
3178 9821 3.067180 CCATATGTCCACATTGACCTTGC 59.933 47.826 1.24 0.00 37.76 4.01
3179 9822 2.592102 ATGTCCACATTGACCTTGCT 57.408 45.000 0.00 0.00 34.25 3.91
3180 9823 1.608055 TGTCCACATTGACCTTGCTG 58.392 50.000 0.00 0.00 34.25 4.41
3181 9824 1.142667 TGTCCACATTGACCTTGCTGA 59.857 47.619 0.00 0.00 34.25 4.26
3182 9825 2.224843 TGTCCACATTGACCTTGCTGAT 60.225 45.455 0.00 0.00 34.25 2.90
3183 9826 3.008923 TGTCCACATTGACCTTGCTGATA 59.991 43.478 0.00 0.00 34.25 2.15
3184 9827 4.202441 GTCCACATTGACCTTGCTGATAT 58.798 43.478 0.00 0.00 0.00 1.63
3185 9828 4.036027 GTCCACATTGACCTTGCTGATATG 59.964 45.833 0.00 0.00 0.00 1.78
3186 9829 3.949754 CCACATTGACCTTGCTGATATGT 59.050 43.478 0.00 0.00 0.00 2.29
3187 9830 4.201980 CCACATTGACCTTGCTGATATGTG 60.202 45.833 0.00 0.00 40.43 3.21
3188 9831 3.949754 ACATTGACCTTGCTGATATGTGG 59.050 43.478 0.00 0.00 0.00 4.17
3189 9832 3.719268 TTGACCTTGCTGATATGTGGT 57.281 42.857 0.00 0.00 0.00 4.16
3190 9833 3.719268 TGACCTTGCTGATATGTGGTT 57.281 42.857 0.00 0.00 0.00 3.67
3191 9834 3.609853 TGACCTTGCTGATATGTGGTTC 58.390 45.455 0.00 0.00 0.00 3.62
3192 9835 3.008923 TGACCTTGCTGATATGTGGTTCA 59.991 43.478 0.00 0.00 0.00 3.18
3193 9836 4.009675 GACCTTGCTGATATGTGGTTCAA 58.990 43.478 0.00 0.00 0.00 2.69
3194 9837 4.406456 ACCTTGCTGATATGTGGTTCAAA 58.594 39.130 0.00 0.00 0.00 2.69
3195 9838 4.832266 ACCTTGCTGATATGTGGTTCAAAA 59.168 37.500 0.00 0.00 0.00 2.44
3196 9839 5.481473 ACCTTGCTGATATGTGGTTCAAAAT 59.519 36.000 0.00 0.00 0.00 1.82
3197 9840 6.663093 ACCTTGCTGATATGTGGTTCAAAATA 59.337 34.615 0.00 0.00 0.00 1.40
3198 9841 7.342799 ACCTTGCTGATATGTGGTTCAAAATAT 59.657 33.333 0.00 0.00 0.00 1.28
3199 9842 7.650504 CCTTGCTGATATGTGGTTCAAAATATG 59.349 37.037 0.00 0.00 0.00 1.78
3200 9843 7.643569 TGCTGATATGTGGTTCAAAATATGT 57.356 32.000 0.00 0.00 0.00 2.29
3201 9844 8.744568 TGCTGATATGTGGTTCAAAATATGTA 57.255 30.769 0.00 0.00 0.00 2.29
3202 9845 9.183368 TGCTGATATGTGGTTCAAAATATGTAA 57.817 29.630 0.00 0.00 0.00 2.41
3209 9852 9.855021 ATGTGGTTCAAAATATGTAAAACTAGC 57.145 29.630 0.00 0.00 0.00 3.42
3210 9853 8.018520 TGTGGTTCAAAATATGTAAAACTAGCG 58.981 33.333 0.00 0.00 0.00 4.26
3211 9854 7.483691 GTGGTTCAAAATATGTAAAACTAGCGG 59.516 37.037 0.00 0.00 0.00 5.52
3212 9855 6.970613 GGTTCAAAATATGTAAAACTAGCGGG 59.029 38.462 0.00 0.00 0.00 6.13
3213 9856 6.687081 TCAAAATATGTAAAACTAGCGGGG 57.313 37.500 0.00 0.00 0.00 5.73
3214 9857 6.181908 TCAAAATATGTAAAACTAGCGGGGT 58.818 36.000 0.00 0.00 0.00 4.95
3215 9858 6.094325 TCAAAATATGTAAAACTAGCGGGGTG 59.906 38.462 0.00 0.00 0.00 4.61
3216 9859 5.362105 AATATGTAAAACTAGCGGGGTGA 57.638 39.130 0.00 0.00 0.00 4.02
3217 9860 2.460757 TGTAAAACTAGCGGGGTGAC 57.539 50.000 0.00 0.00 0.00 3.67
3229 9872 2.258286 GGTGACCCGTGCATTTGC 59.742 61.111 0.00 0.00 42.50 3.68
3230 9873 2.126888 GTGACCCGTGCATTTGCG 60.127 61.111 0.00 0.00 45.83 4.85
3231 9874 2.281139 TGACCCGTGCATTTGCGA 60.281 55.556 0.00 0.00 45.83 5.10
3232 9875 2.324330 TGACCCGTGCATTTGCGAG 61.324 57.895 0.00 0.00 45.83 5.03
3233 9876 3.039202 GACCCGTGCATTTGCGAGG 62.039 63.158 8.57 8.57 45.83 4.63
3234 9877 4.481112 CCCGTGCATTTGCGAGGC 62.481 66.667 9.70 0.00 45.83 4.70
3235 9878 3.434319 CCGTGCATTTGCGAGGCT 61.434 61.111 0.00 0.00 45.83 4.58
3236 9879 2.106074 CCGTGCATTTGCGAGGCTA 61.106 57.895 0.00 0.00 45.83 3.93
3237 9880 1.643868 CCGTGCATTTGCGAGGCTAA 61.644 55.000 0.00 0.00 45.83 3.09
3238 9881 0.167908 CGTGCATTTGCGAGGCTAAA 59.832 50.000 0.00 0.00 45.83 1.85
3239 9882 1.202177 CGTGCATTTGCGAGGCTAAAT 60.202 47.619 0.00 0.00 45.83 1.40
3240 9883 2.731968 CGTGCATTTGCGAGGCTAAATT 60.732 45.455 0.00 0.00 45.83 1.82
3241 9884 2.599973 GTGCATTTGCGAGGCTAAATTG 59.400 45.455 0.00 0.00 45.83 2.32
3242 9885 2.195922 GCATTTGCGAGGCTAAATTGG 58.804 47.619 0.00 0.00 0.00 3.16
3243 9886 2.417243 GCATTTGCGAGGCTAAATTGGT 60.417 45.455 0.00 0.00 0.00 3.67
3244 9887 3.848726 CATTTGCGAGGCTAAATTGGTT 58.151 40.909 0.00 0.00 0.00 3.67
3245 9888 4.676723 GCATTTGCGAGGCTAAATTGGTTA 60.677 41.667 0.00 0.00 0.00 2.85
3246 9889 5.591099 CATTTGCGAGGCTAAATTGGTTAT 58.409 37.500 0.00 0.00 0.00 1.89
3247 9890 4.630894 TTGCGAGGCTAAATTGGTTATG 57.369 40.909 0.00 0.00 0.00 1.90
3248 9891 3.616219 TGCGAGGCTAAATTGGTTATGT 58.384 40.909 0.00 0.00 0.00 2.29
3249 9892 4.013728 TGCGAGGCTAAATTGGTTATGTT 58.986 39.130 0.00 0.00 0.00 2.71
3250 9893 5.186942 TGCGAGGCTAAATTGGTTATGTTA 58.813 37.500 0.00 0.00 0.00 2.41
3251 9894 5.825679 TGCGAGGCTAAATTGGTTATGTTAT 59.174 36.000 0.00 0.00 0.00 1.89
3252 9895 6.320164 TGCGAGGCTAAATTGGTTATGTTATT 59.680 34.615 0.00 0.00 0.00 1.40
3253 9896 7.499563 TGCGAGGCTAAATTGGTTATGTTATTA 59.500 33.333 0.00 0.00 0.00 0.98
3254 9897 8.347035 GCGAGGCTAAATTGGTTATGTTATTAA 58.653 33.333 0.00 0.00 0.00 1.40
3304 9947 9.967451 TTTATTATGTAGGTTCAAATCACTGGA 57.033 29.630 0.00 0.00 0.00 3.86
3306 9949 7.864108 TTATGTAGGTTCAAATCACTGGATG 57.136 36.000 0.00 0.00 32.92 3.51
3307 9950 5.497464 TGTAGGTTCAAATCACTGGATGA 57.503 39.130 0.00 0.00 43.13 2.92
3308 9951 5.875224 TGTAGGTTCAAATCACTGGATGAA 58.125 37.500 0.00 0.00 41.93 2.57
3309 9952 6.484288 TGTAGGTTCAAATCACTGGATGAAT 58.516 36.000 0.00 0.00 41.93 2.57
3310 9953 7.629157 TGTAGGTTCAAATCACTGGATGAATA 58.371 34.615 0.00 0.00 41.93 1.75
3311 9954 8.106462 TGTAGGTTCAAATCACTGGATGAATAA 58.894 33.333 0.00 0.00 41.93 1.40
3312 9955 9.125026 GTAGGTTCAAATCACTGGATGAATAAT 57.875 33.333 0.00 0.00 41.93 1.28
3314 9957 9.872684 AGGTTCAAATCACTGGATGAATAATAT 57.127 29.630 0.00 0.00 41.93 1.28
3341 9984 8.406172 TGAAATGACAAAAGAAAACTTGTAGC 57.594 30.769 0.00 0.00 35.93 3.58
3342 9985 7.491048 TGAAATGACAAAAGAAAACTTGTAGCC 59.509 33.333 0.00 0.00 35.93 3.93
3343 9986 5.906113 TGACAAAAGAAAACTTGTAGCCA 57.094 34.783 0.00 0.00 35.93 4.75
3344 9987 6.463995 TGACAAAAGAAAACTTGTAGCCAT 57.536 33.333 0.00 0.00 35.93 4.40
3345 9988 7.575414 TGACAAAAGAAAACTTGTAGCCATA 57.425 32.000 0.00 0.00 35.93 2.74
3346 9989 8.001881 TGACAAAAGAAAACTTGTAGCCATAA 57.998 30.769 0.00 0.00 35.93 1.90
3347 9990 8.637986 TGACAAAAGAAAACTTGTAGCCATAAT 58.362 29.630 0.00 0.00 35.93 1.28
3349 9992 9.908152 ACAAAAGAAAACTTGTAGCCATAATAC 57.092 29.630 0.00 0.00 34.04 1.89
3350 9993 9.906660 CAAAAGAAAACTTGTAGCCATAATACA 57.093 29.630 0.00 0.00 0.00 2.29
3353 9996 9.461312 AAGAAAACTTGTAGCCATAATACATGA 57.539 29.630 0.00 0.00 33.36 3.07
3354 9997 9.632638 AGAAAACTTGTAGCCATAATACATGAT 57.367 29.630 0.00 0.00 33.36 2.45
3355 9998 9.669353 GAAAACTTGTAGCCATAATACATGATG 57.331 33.333 0.00 0.00 33.36 3.07
3356 9999 6.808008 ACTTGTAGCCATAATACATGATGC 57.192 37.500 0.00 0.00 33.36 3.91
3357 10000 6.298361 ACTTGTAGCCATAATACATGATGCA 58.702 36.000 0.00 0.00 33.36 3.96
3358 10001 6.772233 ACTTGTAGCCATAATACATGATGCAA 59.228 34.615 0.00 0.00 33.36 4.08
3359 10002 7.285172 ACTTGTAGCCATAATACATGATGCAAA 59.715 33.333 0.00 0.00 33.36 3.68
3360 10003 7.579761 TGTAGCCATAATACATGATGCAAAA 57.420 32.000 0.00 0.00 0.00 2.44
3361 10004 8.180706 TGTAGCCATAATACATGATGCAAAAT 57.819 30.769 0.00 0.00 0.00 1.82
3362 10005 9.294614 TGTAGCCATAATACATGATGCAAAATA 57.705 29.630 0.00 0.00 0.00 1.40
3374 10017 8.916062 ACATGATGCAAAATATACTTGGATTCA 58.084 29.630 0.00 6.37 35.28 2.57
3375 10018 9.188588 CATGATGCAAAATATACTTGGATTCAC 57.811 33.333 0.00 0.00 35.28 3.18
3376 10019 8.523915 TGATGCAAAATATACTTGGATTCACT 57.476 30.769 0.00 0.00 35.28 3.41
3377 10020 8.970020 TGATGCAAAATATACTTGGATTCACTT 58.030 29.630 0.00 0.00 35.28 3.16
3378 10021 9.455847 GATGCAAAATATACTTGGATTCACTTC 57.544 33.333 0.00 0.00 35.28 3.01
3379 10022 8.579850 TGCAAAATATACTTGGATTCACTTCT 57.420 30.769 0.00 0.00 0.00 2.85
3380 10023 8.677300 TGCAAAATATACTTGGATTCACTTCTC 58.323 33.333 0.00 0.00 0.00 2.87
3381 10024 7.852945 GCAAAATATACTTGGATTCACTTCTCG 59.147 37.037 0.96 0.00 0.00 4.04
3382 10025 8.338259 CAAAATATACTTGGATTCACTTCTCGG 58.662 37.037 0.00 0.00 0.00 4.63
3383 10026 6.978674 ATATACTTGGATTCACTTCTCGGA 57.021 37.500 0.00 0.00 0.00 4.55
3384 10027 5.677319 ATACTTGGATTCACTTCTCGGAA 57.323 39.130 0.00 0.00 0.00 4.30
3385 10028 4.559862 ACTTGGATTCACTTCTCGGAAT 57.440 40.909 0.00 0.00 36.49 3.01
3386 10029 4.256920 ACTTGGATTCACTTCTCGGAATG 58.743 43.478 0.00 0.00 34.06 2.67
3387 10030 3.981071 TGGATTCACTTCTCGGAATGT 57.019 42.857 0.00 0.00 34.06 2.71
3388 10031 4.286297 TGGATTCACTTCTCGGAATGTT 57.714 40.909 0.00 0.00 34.06 2.71
3389 10032 5.414789 TGGATTCACTTCTCGGAATGTTA 57.585 39.130 0.00 0.00 34.06 2.41
3390 10033 5.989477 TGGATTCACTTCTCGGAATGTTAT 58.011 37.500 0.00 0.00 34.06 1.89
3391 10034 6.414732 TGGATTCACTTCTCGGAATGTTATT 58.585 36.000 0.00 0.00 34.06 1.40
3392 10035 7.561251 TGGATTCACTTCTCGGAATGTTATTA 58.439 34.615 0.00 0.00 34.06 0.98
3393 10036 8.210946 TGGATTCACTTCTCGGAATGTTATTAT 58.789 33.333 0.00 0.00 34.06 1.28
3394 10037 9.057089 GGATTCACTTCTCGGAATGTTATTATT 57.943 33.333 0.00 0.00 34.06 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.006537 TCGGTTAGTCAGCAAGTTTAGCT 59.993 43.478 0.00 0.00 44.62 3.32
9 10 3.323243 TCGGTTAGTCAGCAAGTTTAGC 58.677 45.455 0.00 0.00 0.00 3.09
10 11 5.289675 CAGATCGGTTAGTCAGCAAGTTTAG 59.710 44.000 0.00 0.00 0.00 1.85
11 12 5.047590 TCAGATCGGTTAGTCAGCAAGTTTA 60.048 40.000 0.00 0.00 0.00 2.01
12 13 3.997021 CAGATCGGTTAGTCAGCAAGTTT 59.003 43.478 0.00 0.00 0.00 2.66
13 14 3.258372 TCAGATCGGTTAGTCAGCAAGTT 59.742 43.478 0.00 0.00 0.00 2.66
14 15 2.826128 TCAGATCGGTTAGTCAGCAAGT 59.174 45.455 0.00 0.00 0.00 3.16
15 16 3.510388 TCAGATCGGTTAGTCAGCAAG 57.490 47.619 0.00 0.00 0.00 4.01
16 17 3.006430 TGTTCAGATCGGTTAGTCAGCAA 59.994 43.478 0.00 0.00 0.00 3.91
17 18 2.560981 TGTTCAGATCGGTTAGTCAGCA 59.439 45.455 0.00 0.00 0.00 4.41
18 19 3.232213 TGTTCAGATCGGTTAGTCAGC 57.768 47.619 0.00 0.00 0.00 4.26
19 20 6.811665 TGTTATTGTTCAGATCGGTTAGTCAG 59.188 38.462 0.00 0.00 0.00 3.51
20 21 6.588756 GTGTTATTGTTCAGATCGGTTAGTCA 59.411 38.462 0.00 0.00 0.00 3.41
21 22 6.588756 TGTGTTATTGTTCAGATCGGTTAGTC 59.411 38.462 0.00 0.00 0.00 2.59
22 23 6.460781 TGTGTTATTGTTCAGATCGGTTAGT 58.539 36.000 0.00 0.00 0.00 2.24
23 24 6.961359 TGTGTTATTGTTCAGATCGGTTAG 57.039 37.500 0.00 0.00 0.00 2.34
24 25 7.226918 TGTTTGTGTTATTGTTCAGATCGGTTA 59.773 33.333 0.00 0.00 0.00 2.85
25 26 6.038825 TGTTTGTGTTATTGTTCAGATCGGTT 59.961 34.615 0.00 0.00 0.00 4.44
26 27 5.529430 TGTTTGTGTTATTGTTCAGATCGGT 59.471 36.000 0.00 0.00 0.00 4.69
27 28 5.996219 TGTTTGTGTTATTGTTCAGATCGG 58.004 37.500 0.00 0.00 0.00 4.18
28 29 6.742718 GGATGTTTGTGTTATTGTTCAGATCG 59.257 38.462 0.00 0.00 0.00 3.69
29 30 7.592938 TGGATGTTTGTGTTATTGTTCAGATC 58.407 34.615 0.00 0.00 0.00 2.75
30 31 7.523293 TGGATGTTTGTGTTATTGTTCAGAT 57.477 32.000 0.00 0.00 0.00 2.90
31 32 6.951062 TGGATGTTTGTGTTATTGTTCAGA 57.049 33.333 0.00 0.00 0.00 3.27
32 33 7.369607 TGATGGATGTTTGTGTTATTGTTCAG 58.630 34.615 0.00 0.00 0.00 3.02
33 34 7.282332 TGATGGATGTTTGTGTTATTGTTCA 57.718 32.000 0.00 0.00 0.00 3.18
34 35 7.867403 ACTTGATGGATGTTTGTGTTATTGTTC 59.133 33.333 0.00 0.00 0.00 3.18
35 36 7.652909 CACTTGATGGATGTTTGTGTTATTGTT 59.347 33.333 0.00 0.00 0.00 2.83
36 37 7.147312 CACTTGATGGATGTTTGTGTTATTGT 58.853 34.615 0.00 0.00 0.00 2.71
37 38 7.571089 CACTTGATGGATGTTTGTGTTATTG 57.429 36.000 0.00 0.00 0.00 1.90
53 54 2.342650 CCCCCGTTGCCACTTGATG 61.343 63.158 0.00 0.00 0.00 3.07
54 55 1.493854 TACCCCCGTTGCCACTTGAT 61.494 55.000 0.00 0.00 0.00 2.57
55 56 1.706995 TTACCCCCGTTGCCACTTGA 61.707 55.000 0.00 0.00 0.00 3.02
56 57 0.824182 TTTACCCCCGTTGCCACTTG 60.824 55.000 0.00 0.00 0.00 3.16
57 58 0.106116 TTTTACCCCCGTTGCCACTT 60.106 50.000 0.00 0.00 0.00 3.16
58 59 0.106116 TTTTTACCCCCGTTGCCACT 60.106 50.000 0.00 0.00 0.00 4.00
59 60 0.315886 CTTTTTACCCCCGTTGCCAC 59.684 55.000 0.00 0.00 0.00 5.01
60 61 0.828343 CCTTTTTACCCCCGTTGCCA 60.828 55.000 0.00 0.00 0.00 4.92
61 62 0.540133 TCCTTTTTACCCCCGTTGCC 60.540 55.000 0.00 0.00 0.00 4.52
62 63 0.885879 CTCCTTTTTACCCCCGTTGC 59.114 55.000 0.00 0.00 0.00 4.17
63 64 1.541379 CCTCCTTTTTACCCCCGTTG 58.459 55.000 0.00 0.00 0.00 4.10
64 65 0.251474 GCCTCCTTTTTACCCCCGTT 60.251 55.000 0.00 0.00 0.00 4.44
65 66 1.138228 AGCCTCCTTTTTACCCCCGT 61.138 55.000 0.00 0.00 0.00 5.28
66 67 0.393944 GAGCCTCCTTTTTACCCCCG 60.394 60.000 0.00 0.00 0.00 5.73
67 68 0.702316 TGAGCCTCCTTTTTACCCCC 59.298 55.000 0.00 0.00 0.00 5.40
68 69 2.168496 GTTGAGCCTCCTTTTTACCCC 58.832 52.381 0.00 0.00 0.00 4.95
69 70 2.820197 CTGTTGAGCCTCCTTTTTACCC 59.180 50.000 0.00 0.00 0.00 3.69
70 71 3.487372 ACTGTTGAGCCTCCTTTTTACC 58.513 45.455 0.00 0.00 0.00 2.85
71 72 4.578928 TGAACTGTTGAGCCTCCTTTTTAC 59.421 41.667 0.00 0.00 0.00 2.01
72 73 4.787551 TGAACTGTTGAGCCTCCTTTTTA 58.212 39.130 0.00 0.00 0.00 1.52
73 74 3.631250 TGAACTGTTGAGCCTCCTTTTT 58.369 40.909 0.00 0.00 0.00 1.94
74 75 3.297134 TGAACTGTTGAGCCTCCTTTT 57.703 42.857 0.00 0.00 0.00 2.27
75 76 2.952310 GTTGAACTGTTGAGCCTCCTTT 59.048 45.455 0.00 0.00 0.00 3.11
76 77 2.173569 AGTTGAACTGTTGAGCCTCCTT 59.826 45.455 0.00 0.00 0.00 3.36
77 78 1.771255 AGTTGAACTGTTGAGCCTCCT 59.229 47.619 0.00 0.00 0.00 3.69
78 79 1.876156 CAGTTGAACTGTTGAGCCTCC 59.124 52.381 16.84 0.00 41.19 4.30
79 80 2.838736 TCAGTTGAACTGTTGAGCCTC 58.161 47.619 23.17 0.00 46.03 4.70
80 81 3.281727 TTCAGTTGAACTGTTGAGCCT 57.718 42.857 23.17 0.00 46.03 4.58
81 82 4.036734 TCATTTCAGTTGAACTGTTGAGCC 59.963 41.667 23.17 0.00 46.03 4.70
82 83 5.008019 TCTCATTTCAGTTGAACTGTTGAGC 59.992 40.000 29.10 0.00 46.03 4.26
83 84 6.609237 TCTCATTTCAGTTGAACTGTTGAG 57.391 37.500 28.61 28.61 46.03 3.02
84 85 6.183360 GGTTCTCATTTCAGTTGAACTGTTGA 60.183 38.462 23.17 20.75 46.03 3.18
85 86 5.973565 GGTTCTCATTTCAGTTGAACTGTTG 59.026 40.000 23.17 18.26 46.03 3.33
86 87 5.652014 TGGTTCTCATTTCAGTTGAACTGTT 59.348 36.000 23.17 8.48 46.03 3.16
87 88 5.192927 TGGTTCTCATTTCAGTTGAACTGT 58.807 37.500 23.17 3.19 46.03 3.55
88 89 6.016860 TGATGGTTCTCATTTCAGTTGAACTG 60.017 38.462 18.84 18.84 40.84 3.16
89 90 6.064060 TGATGGTTCTCATTTCAGTTGAACT 58.936 36.000 0.00 0.00 37.66 3.01
90 91 6.317789 TGATGGTTCTCATTTCAGTTGAAC 57.682 37.500 0.00 0.00 35.97 3.18
91 92 6.547141 ACTTGATGGTTCTCATTTCAGTTGAA 59.453 34.615 0.00 0.00 35.97 2.69
92 93 6.016860 CACTTGATGGTTCTCATTTCAGTTGA 60.017 38.462 0.00 0.00 35.97 3.18
93 94 6.147581 CACTTGATGGTTCTCATTTCAGTTG 58.852 40.000 0.00 0.00 35.97 3.16
94 95 5.242393 CCACTTGATGGTTCTCATTTCAGTT 59.758 40.000 0.00 0.00 44.46 3.16
95 96 4.763793 CCACTTGATGGTTCTCATTTCAGT 59.236 41.667 0.00 0.00 44.46 3.41
96 97 5.306532 CCACTTGATGGTTCTCATTTCAG 57.693 43.478 0.00 0.00 44.46 3.02
109 110 2.159128 AGACTCGAGATGCCACTTGATG 60.159 50.000 21.68 0.00 31.01 3.07
110 111 2.106566 AGACTCGAGATGCCACTTGAT 58.893 47.619 21.68 0.00 31.01 2.57
111 112 1.550327 AGACTCGAGATGCCACTTGA 58.450 50.000 21.68 0.00 0.00 3.02
112 113 1.998315 CAAGACTCGAGATGCCACTTG 59.002 52.381 21.68 17.57 0.00 3.16
113 114 1.895798 TCAAGACTCGAGATGCCACTT 59.104 47.619 21.68 10.84 0.00 3.16
114 115 1.550327 TCAAGACTCGAGATGCCACT 58.450 50.000 21.68 5.43 0.00 4.00
115 116 1.996191 GTTCAAGACTCGAGATGCCAC 59.004 52.381 21.68 10.68 0.00 5.01
116 117 1.895798 AGTTCAAGACTCGAGATGCCA 59.104 47.619 21.68 2.84 31.20 4.92
117 118 2.663826 AGTTCAAGACTCGAGATGCC 57.336 50.000 21.68 5.15 31.20 4.40
118 119 3.990469 TGAAAGTTCAAGACTCGAGATGC 59.010 43.478 21.68 8.01 37.72 3.91
119 120 6.718454 AATGAAAGTTCAAGACTCGAGATG 57.282 37.500 21.68 14.60 41.13 2.90
120 121 9.092876 GATAAATGAAAGTTCAAGACTCGAGAT 57.907 33.333 21.68 4.01 41.13 2.75
121 122 8.307483 AGATAAATGAAAGTTCAAGACTCGAGA 58.693 33.333 21.68 0.00 41.13 4.04
122 123 8.472683 AGATAAATGAAAGTTCAAGACTCGAG 57.527 34.615 11.84 11.84 41.13 4.04
123 124 8.833231 AAGATAAATGAAAGTTCAAGACTCGA 57.167 30.769 0.00 0.00 41.13 4.04
124 125 9.322776 CAAAGATAAATGAAAGTTCAAGACTCG 57.677 33.333 0.00 0.00 41.13 4.18
125 126 9.122613 GCAAAGATAAATGAAAGTTCAAGACTC 57.877 33.333 0.00 0.00 41.13 3.36
126 127 8.084684 GGCAAAGATAAATGAAAGTTCAAGACT 58.915 33.333 0.00 0.00 41.13 3.24
127 128 7.867403 TGGCAAAGATAAATGAAAGTTCAAGAC 59.133 33.333 0.00 0.00 41.13 3.01
128 129 7.950512 TGGCAAAGATAAATGAAAGTTCAAGA 58.049 30.769 0.00 0.00 41.13 3.02
129 130 8.653338 CATGGCAAAGATAAATGAAAGTTCAAG 58.347 33.333 0.00 0.00 41.13 3.02
130 131 8.149647 ACATGGCAAAGATAAATGAAAGTTCAA 58.850 29.630 0.00 0.00 41.13 2.69
131 132 7.599621 CACATGGCAAAGATAAATGAAAGTTCA 59.400 33.333 0.00 0.00 42.14 3.18
132 133 7.814107 TCACATGGCAAAGATAAATGAAAGTTC 59.186 33.333 0.00 0.00 0.00 3.01
133 134 7.669427 TCACATGGCAAAGATAAATGAAAGTT 58.331 30.769 0.00 0.00 0.00 2.66
134 135 7.230849 TCACATGGCAAAGATAAATGAAAGT 57.769 32.000 0.00 0.00 0.00 2.66
135 136 7.223971 CCATCACATGGCAAAGATAAATGAAAG 59.776 37.037 0.00 0.00 44.70 2.62
136 137 7.042950 CCATCACATGGCAAAGATAAATGAAA 58.957 34.615 0.00 0.00 44.70 2.69
137 138 6.575267 CCATCACATGGCAAAGATAAATGAA 58.425 36.000 0.00 0.00 44.70 2.57
138 139 6.151663 CCATCACATGGCAAAGATAAATGA 57.848 37.500 0.00 0.00 44.70 2.57
152 153 4.677673 TGGATCTAGACACCATCACATG 57.322 45.455 14.22 0.00 0.00 3.21
153 154 5.698741 TTTGGATCTAGACACCATCACAT 57.301 39.130 17.59 0.00 33.56 3.21
154 155 5.497464 TTTTGGATCTAGACACCATCACA 57.503 39.130 17.59 4.27 33.56 3.58
155 156 6.599244 TCAATTTTGGATCTAGACACCATCAC 59.401 38.462 17.59 0.00 33.56 3.06
156 157 6.720309 TCAATTTTGGATCTAGACACCATCA 58.280 36.000 17.59 10.11 33.56 3.07
157 158 7.630242 TTCAATTTTGGATCTAGACACCATC 57.370 36.000 17.59 2.10 33.56 3.51
158 159 7.362056 CGTTTCAATTTTGGATCTAGACACCAT 60.362 37.037 17.59 4.56 33.56 3.55
159 160 6.072728 CGTTTCAATTTTGGATCTAGACACCA 60.073 38.462 14.22 14.22 0.00 4.17
160 161 6.314784 CGTTTCAATTTTGGATCTAGACACC 58.685 40.000 9.97 9.97 0.00 4.16
161 162 6.314784 CCGTTTCAATTTTGGATCTAGACAC 58.685 40.000 0.00 0.00 0.00 3.67
162 163 5.414454 CCCGTTTCAATTTTGGATCTAGACA 59.586 40.000 0.00 0.00 0.00 3.41
165 166 5.449177 GCTCCCGTTTCAATTTTGGATCTAG 60.449 44.000 0.00 0.00 0.00 2.43
179 180 5.041287 GCTTTAATTAATGGCTCCCGTTTC 58.959 41.667 11.76 0.00 34.27 2.78
185 186 2.296190 CCGGGCTTTAATTAATGGCTCC 59.704 50.000 26.43 19.65 36.54 4.70
196 197 1.626825 ACTGCTAGTTCCGGGCTTTAA 59.373 47.619 0.00 0.00 0.00 1.52
198 199 0.036294 GACTGCTAGTTCCGGGCTTT 60.036 55.000 0.00 0.00 0.00 3.51
203 204 2.028930 AGAAACAGACTGCTAGTTCCGG 60.029 50.000 1.25 0.00 0.00 5.14
214 215 7.228906 GCTACCCTAAAAAGAAAGAAACAGACT 59.771 37.037 0.00 0.00 0.00 3.24
218 219 6.238925 GCTGCTACCCTAAAAAGAAAGAAACA 60.239 38.462 0.00 0.00 0.00 2.83
219 220 6.150318 GCTGCTACCCTAAAAAGAAAGAAAC 58.850 40.000 0.00 0.00 0.00 2.78
220 221 5.243060 GGCTGCTACCCTAAAAAGAAAGAAA 59.757 40.000 0.00 0.00 0.00 2.52
221 222 4.765339 GGCTGCTACCCTAAAAAGAAAGAA 59.235 41.667 0.00 0.00 0.00 2.52
222 223 4.332828 GGCTGCTACCCTAAAAAGAAAGA 58.667 43.478 0.00 0.00 0.00 2.52
268 269 4.550255 CGGAAGAAAGAACAGACAACGAAC 60.550 45.833 0.00 0.00 0.00 3.95
274 275 3.812156 TCACGGAAGAAAGAACAGACA 57.188 42.857 0.00 0.00 0.00 3.41
277 278 4.752101 AGTTCATCACGGAAGAAAGAACAG 59.248 41.667 17.15 0.00 38.24 3.16
304 305 1.153353 ACAAATGTAGAACCGGTGCG 58.847 50.000 8.52 0.00 0.00 5.34
328 329 2.677914 TCTCAGTTCCTCAGTCCACAA 58.322 47.619 0.00 0.00 0.00 3.33
342 343 3.260205 TGAAATCCCCTTCCTTCTCAGT 58.740 45.455 0.00 0.00 0.00 3.41
364 372 2.991076 GCGACGGACTGCCACTAGT 61.991 63.158 0.00 0.00 0.00 2.57
372 380 2.870161 CGACGAAGCGACGGACTG 60.870 66.667 9.92 0.00 40.63 3.51
388 396 2.203422 TCCACAAAAGCCCCACCG 60.203 61.111 0.00 0.00 0.00 4.94
406 414 1.736681 CAGCTCTACAAAGCCTTCTGC 59.263 52.381 0.00 0.00 43.56 4.26
409 417 2.481952 CACACAGCTCTACAAAGCCTTC 59.518 50.000 0.00 0.00 43.56 3.46
414 422 3.722147 ACAGACACACAGCTCTACAAAG 58.278 45.455 0.00 0.00 0.00 2.77
416 424 3.819564 AACAGACACACAGCTCTACAA 57.180 42.857 0.00 0.00 0.00 2.41
428 436 7.920682 ACATTAAAGGATCAAACAAACAGACAC 59.079 33.333 0.00 0.00 0.00 3.67
453 461 9.477484 TTGAACAGAGTAGAGAACTATTTTCAC 57.523 33.333 1.97 0.00 42.68 3.18
457 467 8.740906 TCGATTGAACAGAGTAGAGAACTATTT 58.259 33.333 0.00 0.00 39.07 1.40
458 468 8.282455 TCGATTGAACAGAGTAGAGAACTATT 57.718 34.615 0.00 0.00 39.07 1.73
463 473 7.556635 TCCTTATCGATTGAACAGAGTAGAGAA 59.443 37.037 1.71 0.00 0.00 2.87
473 483 6.488683 ACCTTTTTGTCCTTATCGATTGAACA 59.511 34.615 1.71 0.77 0.00 3.18
474 484 6.909909 ACCTTTTTGTCCTTATCGATTGAAC 58.090 36.000 1.71 0.00 0.00 3.18
490 503 2.524569 AATGGCCACGAACCTTTTTG 57.475 45.000 8.16 0.00 0.00 2.44
504 517 2.531522 AGGTTCAGTTTGCAAATGGC 57.468 45.000 16.21 2.40 45.13 4.40
529 545 3.030291 TGGCCAGAAAAGAGAAAGCAAA 58.970 40.909 0.00 0.00 0.00 3.68
582 617 6.830324 TGATCTTACATTTTGAGATGGAAGGG 59.170 38.462 9.32 0.00 44.58 3.95
631 666 9.995003 CAGCCTTTCAAATATTATACTCTCTCT 57.005 33.333 0.00 0.00 0.00 3.10
656 691 1.210204 AAGCATCTCCTTGGAGGCCA 61.210 55.000 15.81 0.00 42.97 5.36
657 692 0.839946 TAAGCATCTCCTTGGAGGCC 59.160 55.000 15.81 0.00 42.97 5.19
683 718 9.537852 TCCAAGTCTACACCTACTAATCTTAAA 57.462 33.333 0.00 0.00 0.00 1.52
684 719 8.964772 GTCCAAGTCTACACCTACTAATCTTAA 58.035 37.037 0.00 0.00 0.00 1.85
688 723 5.221009 CCGTCCAAGTCTACACCTACTAATC 60.221 48.000 0.00 0.00 0.00 1.75
689 724 4.643784 CCGTCCAAGTCTACACCTACTAAT 59.356 45.833 0.00 0.00 0.00 1.73
690 725 4.012374 CCGTCCAAGTCTACACCTACTAA 58.988 47.826 0.00 0.00 0.00 2.24
691 726 3.614092 CCGTCCAAGTCTACACCTACTA 58.386 50.000 0.00 0.00 0.00 1.82
695 730 1.542187 GCCCGTCCAAGTCTACACCT 61.542 60.000 0.00 0.00 0.00 4.00
721 756 2.029964 GCCCCGTGTGAGTTCGAA 59.970 61.111 0.00 0.00 0.00 3.71
733 768 0.109342 ATCATTAAGCTCTGGCCCCG 59.891 55.000 0.00 0.00 39.73 5.73
735 770 2.645838 TCATCATTAAGCTCTGGCCC 57.354 50.000 0.00 0.00 39.73 5.80
840 875 7.853299 TGGCATATTTTACTCACTACACCTTA 58.147 34.615 0.00 0.00 0.00 2.69
866 901 1.679680 TGGATAAGTCACCGATCGACC 59.320 52.381 18.66 0.76 33.70 4.79
867 902 2.859032 GCTGGATAAGTCACCGATCGAC 60.859 54.545 18.66 7.04 0.00 4.20
940 4453 8.809468 TTCTTTCTTCTAGTGCTACTCTGATA 57.191 34.615 0.00 0.00 0.00 2.15
1057 4570 1.865865 GCTTTTCTCGGTGTGTCTGA 58.134 50.000 0.00 0.00 0.00 3.27
1068 4581 2.200899 GAGAGCCAGATCGCTTTTCTC 58.799 52.381 0.00 0.17 39.87 2.87
1125 4638 2.100197 CGGTAGAAGTGGATGAGTGGA 58.900 52.381 0.00 0.00 0.00 4.02
1146 4659 0.531090 TGGTTTCGTCGACACAAGGG 60.531 55.000 17.16 0.00 0.00 3.95
1168 4681 2.014128 CACGTCAAAGAAGTGTTGGGT 58.986 47.619 5.16 0.00 37.29 4.51
1174 4687 2.069273 CCTAGCCACGTCAAAGAAGTG 58.931 52.381 6.17 6.17 40.62 3.16
1189 4702 1.461127 CAACGCAGTCTTCAACCTAGC 59.539 52.381 0.00 0.00 45.00 3.42
1207 4720 1.531365 CCACAAGGGCCTTGCTCAA 60.531 57.895 39.34 0.00 44.43 3.02
1218 4731 0.984230 TGAGGTAGAAGGCCACAAGG 59.016 55.000 5.01 0.00 38.23 3.61
1281 4794 0.403655 TGCCCTTACCATTGCAGTCA 59.596 50.000 0.00 0.00 0.00 3.41
1290 4803 1.635487 AGAAAGAGCATGCCCTTACCA 59.365 47.619 15.42 0.00 0.00 3.25
1344 4857 1.014044 GTGATGGCTTGAAGTCGCGA 61.014 55.000 3.71 3.71 0.00 5.87
1353 4866 2.165030 CCTTAGCTTTGGTGATGGCTTG 59.835 50.000 0.00 0.00 36.40 4.01
1363 4876 3.636764 ACAAACAACCTCCTTAGCTTTGG 59.363 43.478 0.00 0.00 0.00 3.28
1408 4921 2.045926 GGTGGCGCAGAGGATGTT 60.046 61.111 10.83 0.00 0.00 2.71
1416 4929 3.673484 CAAACCTGGGTGGCGCAG 61.673 66.667 10.83 6.27 42.81 5.18
1479 4998 2.225467 GCCTGCTTGGATTGAGGATAC 58.775 52.381 0.00 0.00 38.35 2.24
1504 5028 7.835822 TGATTTGGTGAGAAGAAAGAAAAACA 58.164 30.769 0.00 0.00 0.00 2.83
1519 5043 9.695526 GCTATTGCAATATAATTGATTTGGTGA 57.304 29.630 19.17 0.00 39.41 4.02
1568 8200 5.956068 TGCACATATTACTTGCTTGTTGA 57.044 34.783 0.00 0.00 37.16 3.18
1590 8222 8.124808 TGCATACATATATGGATTTGCATGTT 57.875 30.769 18.36 0.00 38.97 2.71
1619 8251 3.885297 CTCCACCACACTTGAAGAATGTT 59.115 43.478 0.00 0.00 0.00 2.71
1688 8320 1.878953 TCTGGAAGAAGTGAAACGCC 58.121 50.000 0.00 0.00 42.31 5.68
1865 8497 2.702847 GTTGACAACGACAGGCCTT 58.297 52.632 0.00 0.00 0.00 4.35
1866 8498 4.456806 GTTGACAACGACAGGCCT 57.543 55.556 0.00 0.00 0.00 5.19
1877 8509 1.210967 AGGGTGAAAACCTCGTTGACA 59.789 47.619 0.00 0.00 31.01 3.58
2011 8649 4.357947 GCGTCGTGGAGTCTGGCA 62.358 66.667 0.00 0.00 0.00 4.92
2033 8671 1.375326 GAAGTTGGCCGGGAACTCT 59.625 57.895 2.18 0.00 32.33 3.24
2159 8797 2.509336 CTGATCCGGTGTGCGACC 60.509 66.667 0.00 0.00 42.07 4.79
2165 8803 1.178276 GAGTGTCTCTGATCCGGTGT 58.822 55.000 0.00 0.00 0.00 4.16
2429 9072 2.124570 GGACATGGACAGGCGCAT 60.125 61.111 10.83 0.00 0.00 4.73
2465 9108 1.531578 GAACAAACGCTGGAACTCCTC 59.468 52.381 0.00 0.00 36.82 3.71
2500 9143 1.331214 ACTTGGAATGCACCTTGGTG 58.669 50.000 14.94 14.94 0.00 4.17
2502 9145 2.242043 AGAACTTGGAATGCACCTTGG 58.758 47.619 0.00 0.00 0.00 3.61
2510 9153 1.017387 GCCGGCTAGAACTTGGAATG 58.983 55.000 22.15 0.00 0.00 2.67
2534 9177 2.666508 CGACAGAAATAACGGAGGTGTG 59.333 50.000 0.00 0.00 0.00 3.82
2536 9179 2.955614 ACGACAGAAATAACGGAGGTG 58.044 47.619 0.00 0.00 0.00 4.00
2556 9199 8.634335 TCTCCATCAAGTGAAACAAAATCATA 57.366 30.769 0.00 0.00 41.43 2.15
2624 9267 3.455910 TGGCTAAACACCTGAGCATATCT 59.544 43.478 0.00 0.00 37.98 1.98
3091 9734 8.846943 TCTACACACAAATGTCAGAACAATAT 57.153 30.769 0.00 0.00 39.30 1.28
3092 9735 8.846943 ATCTACACACAAATGTCAGAACAATA 57.153 30.769 0.00 0.00 39.30 1.90
3093 9736 7.360353 CGATCTACACACAAATGTCAGAACAAT 60.360 37.037 0.00 0.00 39.30 2.71
3094 9737 6.073819 CGATCTACACACAAATGTCAGAACAA 60.074 38.462 0.00 0.00 39.30 2.83
3095 9738 5.405269 CGATCTACACACAAATGTCAGAACA 59.595 40.000 0.00 0.00 36.72 3.18
3096 9739 5.163953 CCGATCTACACACAAATGTCAGAAC 60.164 44.000 0.00 0.00 36.72 3.01
3097 9740 4.929211 CCGATCTACACACAAATGTCAGAA 59.071 41.667 0.00 0.00 36.72 3.02
3098 9741 4.494484 CCGATCTACACACAAATGTCAGA 58.506 43.478 0.00 0.00 36.72 3.27
3099 9742 3.062639 GCCGATCTACACACAAATGTCAG 59.937 47.826 0.00 0.00 36.72 3.51
3100 9743 3.000041 GCCGATCTACACACAAATGTCA 59.000 45.455 0.00 0.00 36.72 3.58
3101 9744 3.000041 TGCCGATCTACACACAAATGTC 59.000 45.455 0.00 0.00 36.72 3.06
3102 9745 3.052455 TGCCGATCTACACACAAATGT 57.948 42.857 0.00 0.00 40.80 2.71
3103 9746 3.436704 AGTTGCCGATCTACACACAAATG 59.563 43.478 0.00 0.00 0.00 2.32
3104 9747 3.674997 AGTTGCCGATCTACACACAAAT 58.325 40.909 0.00 0.00 0.00 2.32
3105 9748 3.120321 AGTTGCCGATCTACACACAAA 57.880 42.857 0.00 0.00 0.00 2.83
3106 9749 2.831685 AGTTGCCGATCTACACACAA 57.168 45.000 0.00 0.00 0.00 3.33
3107 9750 2.416836 GCTAGTTGCCGATCTACACACA 60.417 50.000 0.00 0.00 35.15 3.72
3108 9751 2.159226 AGCTAGTTGCCGATCTACACAC 60.159 50.000 0.00 0.00 44.23 3.82
3109 9752 2.100197 AGCTAGTTGCCGATCTACACA 58.900 47.619 0.00 0.00 44.23 3.72
3110 9753 2.873133 AGCTAGTTGCCGATCTACAC 57.127 50.000 0.00 0.00 44.23 2.90
3111 9754 3.067742 GGTTAGCTAGTTGCCGATCTACA 59.932 47.826 0.00 0.00 44.23 2.74
3112 9755 3.640592 GGTTAGCTAGTTGCCGATCTAC 58.359 50.000 0.00 0.00 44.23 2.59
3113 9756 2.292569 CGGTTAGCTAGTTGCCGATCTA 59.707 50.000 17.45 0.00 44.57 1.98
3114 9757 1.067212 CGGTTAGCTAGTTGCCGATCT 59.933 52.381 17.45 0.00 44.57 2.75
3115 9758 1.066605 TCGGTTAGCTAGTTGCCGATC 59.933 52.381 19.60 0.00 45.26 3.69
3116 9759 1.108776 TCGGTTAGCTAGTTGCCGAT 58.891 50.000 19.60 0.00 45.26 4.18
3118 9761 2.034305 AGTATCGGTTAGCTAGTTGCCG 59.966 50.000 16.69 16.69 44.23 5.69
3119 9762 3.729862 AGTATCGGTTAGCTAGTTGCC 57.270 47.619 0.00 0.00 44.23 4.52
3120 9763 6.271566 AGTTAAGTATCGGTTAGCTAGTTGC 58.728 40.000 0.00 0.00 43.29 4.17
3121 9764 8.699283 AAAGTTAAGTATCGGTTAGCTAGTTG 57.301 34.615 0.00 0.00 0.00 3.16
3147 9790 9.453572 GTCAATGTGGACATATGGACATATATT 57.546 33.333 7.80 5.71 37.73 1.28
3148 9791 8.049117 GGTCAATGTGGACATATGGACATATAT 58.951 37.037 15.54 0.00 39.59 0.86
3149 9792 7.237471 AGGTCAATGTGGACATATGGACATATA 59.763 37.037 15.54 2.33 39.59 0.86
3150 9793 6.044754 AGGTCAATGTGGACATATGGACATAT 59.955 38.462 15.54 6.51 39.59 1.78
3151 9794 5.369404 AGGTCAATGTGGACATATGGACATA 59.631 40.000 15.54 4.38 39.59 2.29
3152 9795 4.166725 AGGTCAATGTGGACATATGGACAT 59.833 41.667 15.54 9.19 39.59 3.06
3153 9796 3.523157 AGGTCAATGTGGACATATGGACA 59.477 43.478 15.54 7.25 39.59 4.02
3154 9797 4.156455 AGGTCAATGTGGACATATGGAC 57.844 45.455 7.80 7.75 39.59 4.02
3155 9798 4.525996 CAAGGTCAATGTGGACATATGGA 58.474 43.478 7.80 0.00 39.59 3.41
3156 9799 3.067180 GCAAGGTCAATGTGGACATATGG 59.933 47.826 7.80 0.00 39.59 2.74
3157 9800 3.949754 AGCAAGGTCAATGTGGACATATG 59.050 43.478 0.00 0.00 39.59 1.78
3158 9801 3.949754 CAGCAAGGTCAATGTGGACATAT 59.050 43.478 0.00 0.00 39.59 1.78
3159 9802 3.008923 TCAGCAAGGTCAATGTGGACATA 59.991 43.478 0.00 0.00 39.59 2.29
3160 9803 2.165167 CAGCAAGGTCAATGTGGACAT 58.835 47.619 0.00 0.00 39.59 3.06
3161 9804 1.142667 TCAGCAAGGTCAATGTGGACA 59.857 47.619 0.00 0.00 39.59 4.02
3162 9805 1.896220 TCAGCAAGGTCAATGTGGAC 58.104 50.000 0.00 0.00 37.06 4.02
3163 9806 2.885135 ATCAGCAAGGTCAATGTGGA 57.115 45.000 0.00 0.00 0.00 4.02
3164 9807 3.949754 ACATATCAGCAAGGTCAATGTGG 59.050 43.478 0.00 0.00 0.00 4.17
3165 9808 4.201980 CCACATATCAGCAAGGTCAATGTG 60.202 45.833 0.00 0.00 41.35 3.21
3166 9809 3.949754 CCACATATCAGCAAGGTCAATGT 59.050 43.478 0.00 0.00 0.00 2.71
3167 9810 3.949754 ACCACATATCAGCAAGGTCAATG 59.050 43.478 0.00 0.00 0.00 2.82
3168 9811 4.240881 ACCACATATCAGCAAGGTCAAT 57.759 40.909 0.00 0.00 0.00 2.57
3169 9812 3.719268 ACCACATATCAGCAAGGTCAA 57.281 42.857 0.00 0.00 0.00 3.18
3170 9813 3.008923 TGAACCACATATCAGCAAGGTCA 59.991 43.478 0.00 0.00 0.00 4.02
3171 9814 3.609853 TGAACCACATATCAGCAAGGTC 58.390 45.455 0.00 0.00 0.00 3.85
3172 9815 3.719268 TGAACCACATATCAGCAAGGT 57.281 42.857 0.00 0.00 0.00 3.50
3173 9816 5.389859 TTTTGAACCACATATCAGCAAGG 57.610 39.130 0.00 0.00 0.00 3.61
3174 9817 8.192774 ACATATTTTGAACCACATATCAGCAAG 58.807 33.333 0.00 0.00 0.00 4.01
3175 9818 8.065473 ACATATTTTGAACCACATATCAGCAA 57.935 30.769 0.00 0.00 0.00 3.91
3176 9819 7.643569 ACATATTTTGAACCACATATCAGCA 57.356 32.000 0.00 0.00 0.00 4.41
3183 9826 9.855021 GCTAGTTTTACATATTTTGAACCACAT 57.145 29.630 0.00 0.00 0.00 3.21
3184 9827 8.018520 CGCTAGTTTTACATATTTTGAACCACA 58.981 33.333 0.00 0.00 0.00 4.17
3185 9828 7.483691 CCGCTAGTTTTACATATTTTGAACCAC 59.516 37.037 0.00 0.00 0.00 4.16
3186 9829 7.362229 CCCGCTAGTTTTACATATTTTGAACCA 60.362 37.037 0.00 0.00 0.00 3.67
3187 9830 6.970613 CCCGCTAGTTTTACATATTTTGAACC 59.029 38.462 0.00 0.00 0.00 3.62
3188 9831 6.970613 CCCCGCTAGTTTTACATATTTTGAAC 59.029 38.462 0.00 0.00 0.00 3.18
3189 9832 6.660094 ACCCCGCTAGTTTTACATATTTTGAA 59.340 34.615 0.00 0.00 0.00 2.69
3190 9833 6.094325 CACCCCGCTAGTTTTACATATTTTGA 59.906 38.462 0.00 0.00 0.00 2.69
3191 9834 6.094325 TCACCCCGCTAGTTTTACATATTTTG 59.906 38.462 0.00 0.00 0.00 2.44
3192 9835 6.094464 GTCACCCCGCTAGTTTTACATATTTT 59.906 38.462 0.00 0.00 0.00 1.82
3193 9836 5.587443 GTCACCCCGCTAGTTTTACATATTT 59.413 40.000 0.00 0.00 0.00 1.40
3194 9837 5.121105 GTCACCCCGCTAGTTTTACATATT 58.879 41.667 0.00 0.00 0.00 1.28
3195 9838 4.443881 GGTCACCCCGCTAGTTTTACATAT 60.444 45.833 0.00 0.00 0.00 1.78
3196 9839 3.118665 GGTCACCCCGCTAGTTTTACATA 60.119 47.826 0.00 0.00 0.00 2.29
3197 9840 2.355412 GGTCACCCCGCTAGTTTTACAT 60.355 50.000 0.00 0.00 0.00 2.29
3198 9841 1.002315 GGTCACCCCGCTAGTTTTACA 59.998 52.381 0.00 0.00 0.00 2.41
3199 9842 1.676916 GGGTCACCCCGCTAGTTTTAC 60.677 57.143 0.00 0.00 42.41 2.01
3200 9843 0.614812 GGGTCACCCCGCTAGTTTTA 59.385 55.000 0.00 0.00 42.41 1.52
3201 9844 1.377612 GGGTCACCCCGCTAGTTTT 59.622 57.895 0.00 0.00 42.41 2.43
3202 9845 3.075186 GGGTCACCCCGCTAGTTT 58.925 61.111 0.00 0.00 42.41 2.66
3211 9854 2.961768 CAAATGCACGGGTCACCC 59.038 61.111 1.06 1.06 41.09 4.61
3212 9855 2.258286 GCAAATGCACGGGTCACC 59.742 61.111 0.00 0.00 41.59 4.02
3213 9856 2.126888 CGCAAATGCACGGGTCAC 60.127 61.111 6.18 0.00 42.21 3.67
3214 9857 2.281139 TCGCAAATGCACGGGTCA 60.281 55.556 6.18 0.00 42.21 4.02
3215 9858 2.480555 CTCGCAAATGCACGGGTC 59.519 61.111 6.18 0.00 42.21 4.46
3216 9859 3.055719 CCTCGCAAATGCACGGGT 61.056 61.111 6.18 0.00 42.21 5.28
3217 9860 4.481112 GCCTCGCAAATGCACGGG 62.481 66.667 6.18 5.25 42.21 5.28
3218 9861 1.643868 TTAGCCTCGCAAATGCACGG 61.644 55.000 6.18 5.96 42.21 4.94
3219 9862 0.167908 TTTAGCCTCGCAAATGCACG 59.832 50.000 6.18 0.00 42.21 5.34
3220 9863 2.566952 ATTTAGCCTCGCAAATGCAC 57.433 45.000 6.18 0.00 42.21 4.57
3221 9864 2.417107 CCAATTTAGCCTCGCAAATGCA 60.417 45.455 6.18 0.00 42.21 3.96
3222 9865 2.195922 CCAATTTAGCCTCGCAAATGC 58.804 47.619 0.00 0.00 37.78 3.56
3223 9866 3.508744 ACCAATTTAGCCTCGCAAATG 57.491 42.857 0.00 0.00 0.00 2.32
3224 9867 5.127031 ACATAACCAATTTAGCCTCGCAAAT 59.873 36.000 0.00 0.00 0.00 2.32
3225 9868 4.461081 ACATAACCAATTTAGCCTCGCAAA 59.539 37.500 0.00 0.00 0.00 3.68
3226 9869 4.013728 ACATAACCAATTTAGCCTCGCAA 58.986 39.130 0.00 0.00 0.00 4.85
3227 9870 3.616219 ACATAACCAATTTAGCCTCGCA 58.384 40.909 0.00 0.00 0.00 5.10
3228 9871 4.632538 AACATAACCAATTTAGCCTCGC 57.367 40.909 0.00 0.00 0.00 5.03
3278 9921 9.967451 TCCAGTGATTTGAACCTACATAATAAA 57.033 29.630 0.00 0.00 0.00 1.40
3280 9923 9.559732 CATCCAGTGATTTGAACCTACATAATA 57.440 33.333 0.00 0.00 0.00 0.98
3281 9924 8.274322 TCATCCAGTGATTTGAACCTACATAAT 58.726 33.333 0.00 0.00 0.00 1.28
3282 9925 7.629157 TCATCCAGTGATTTGAACCTACATAA 58.371 34.615 0.00 0.00 0.00 1.90
3283 9926 7.194112 TCATCCAGTGATTTGAACCTACATA 57.806 36.000 0.00 0.00 0.00 2.29
3284 9927 6.065976 TCATCCAGTGATTTGAACCTACAT 57.934 37.500 0.00 0.00 0.00 2.29
3285 9928 5.497464 TCATCCAGTGATTTGAACCTACA 57.503 39.130 0.00 0.00 0.00 2.74
3286 9929 8.506168 TTATTCATCCAGTGATTTGAACCTAC 57.494 34.615 0.00 0.00 36.54 3.18
3288 9931 9.872684 ATATTATTCATCCAGTGATTTGAACCT 57.127 29.630 0.00 0.00 36.54 3.50
3315 9958 8.868916 GCTACAAGTTTTCTTTTGTCATTTCAA 58.131 29.630 0.00 0.00 38.17 2.69
3316 9959 7.491048 GGCTACAAGTTTTCTTTTGTCATTTCA 59.509 33.333 0.00 0.00 38.17 2.69
3317 9960 7.491048 TGGCTACAAGTTTTCTTTTGTCATTTC 59.509 33.333 0.00 0.00 38.17 2.17
3318 9961 7.327214 TGGCTACAAGTTTTCTTTTGTCATTT 58.673 30.769 0.00 0.00 38.17 2.32
3319 9962 6.872920 TGGCTACAAGTTTTCTTTTGTCATT 58.127 32.000 0.00 0.00 38.17 2.57
3320 9963 6.463995 TGGCTACAAGTTTTCTTTTGTCAT 57.536 33.333 0.00 0.00 38.17 3.06
3321 9964 5.906113 TGGCTACAAGTTTTCTTTTGTCA 57.094 34.783 0.00 0.00 38.17 3.58
3323 9966 9.908152 GTATTATGGCTACAAGTTTTCTTTTGT 57.092 29.630 0.00 0.00 38.17 2.83
3324 9967 9.906660 TGTATTATGGCTACAAGTTTTCTTTTG 57.093 29.630 0.00 0.00 38.17 2.44
3327 9970 9.461312 TCATGTATTATGGCTACAAGTTTTCTT 57.539 29.630 0.00 0.00 41.31 2.52
3328 9971 9.632638 ATCATGTATTATGGCTACAAGTTTTCT 57.367 29.630 0.00 0.00 33.12 2.52
3329 9972 9.669353 CATCATGTATTATGGCTACAAGTTTTC 57.331 33.333 0.00 0.00 33.12 2.29
3330 9973 8.137437 GCATCATGTATTATGGCTACAAGTTTT 58.863 33.333 0.00 0.00 33.12 2.43
3331 9974 7.285172 TGCATCATGTATTATGGCTACAAGTTT 59.715 33.333 0.00 0.00 33.12 2.66
3332 9975 6.772233 TGCATCATGTATTATGGCTACAAGTT 59.228 34.615 0.00 0.00 33.12 2.66
3333 9976 6.298361 TGCATCATGTATTATGGCTACAAGT 58.702 36.000 0.00 0.00 33.12 3.16
3334 9977 6.806388 TGCATCATGTATTATGGCTACAAG 57.194 37.500 0.00 0.00 33.12 3.16
3335 9978 7.579761 TTTGCATCATGTATTATGGCTACAA 57.420 32.000 0.00 0.00 33.12 2.41
3336 9979 7.579761 TTTTGCATCATGTATTATGGCTACA 57.420 32.000 0.00 0.00 33.86 2.74
3348 9991 8.916062 TGAATCCAAGTATATTTTGCATCATGT 58.084 29.630 0.00 0.00 0.00 3.21
3349 9992 9.188588 GTGAATCCAAGTATATTTTGCATCATG 57.811 33.333 0.00 0.00 0.00 3.07
3350 9993 9.139734 AGTGAATCCAAGTATATTTTGCATCAT 57.860 29.630 0.00 0.00 0.00 2.45
3351 9994 8.523915 AGTGAATCCAAGTATATTTTGCATCA 57.476 30.769 0.00 0.00 0.00 3.07
3352 9995 9.455847 GAAGTGAATCCAAGTATATTTTGCATC 57.544 33.333 0.00 0.00 0.00 3.91
3353 9996 9.193806 AGAAGTGAATCCAAGTATATTTTGCAT 57.806 29.630 0.00 0.00 0.00 3.96
3354 9997 8.579850 AGAAGTGAATCCAAGTATATTTTGCA 57.420 30.769 0.00 0.00 0.00 4.08
3355 9998 7.852945 CGAGAAGTGAATCCAAGTATATTTTGC 59.147 37.037 0.00 0.00 0.00 3.68
3356 9999 8.338259 CCGAGAAGTGAATCCAAGTATATTTTG 58.662 37.037 0.00 0.00 0.00 2.44
3357 10000 8.265055 TCCGAGAAGTGAATCCAAGTATATTTT 58.735 33.333 0.00 0.00 0.00 1.82
3358 10001 7.792032 TCCGAGAAGTGAATCCAAGTATATTT 58.208 34.615 0.00 0.00 0.00 1.40
3359 10002 7.361457 TCCGAGAAGTGAATCCAAGTATATT 57.639 36.000 0.00 0.00 0.00 1.28
3360 10003 6.978674 TCCGAGAAGTGAATCCAAGTATAT 57.021 37.500 0.00 0.00 0.00 0.86
3361 10004 6.785337 TTCCGAGAAGTGAATCCAAGTATA 57.215 37.500 0.00 0.00 0.00 1.47
3362 10005 5.677319 TTCCGAGAAGTGAATCCAAGTAT 57.323 39.130 0.00 0.00 0.00 2.12
3363 10006 5.046591 ACATTCCGAGAAGTGAATCCAAGTA 60.047 40.000 0.00 0.00 0.00 2.24
3364 10007 4.256920 CATTCCGAGAAGTGAATCCAAGT 58.743 43.478 0.00 0.00 0.00 3.16
3365 10008 4.256920 ACATTCCGAGAAGTGAATCCAAG 58.743 43.478 0.00 0.00 0.00 3.61
3366 10009 4.286297 ACATTCCGAGAAGTGAATCCAA 57.714 40.909 0.00 0.00 0.00 3.53
3367 10010 3.981071 ACATTCCGAGAAGTGAATCCA 57.019 42.857 0.00 0.00 0.00 3.41
3368 10011 6.927294 AATAACATTCCGAGAAGTGAATCC 57.073 37.500 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.