Multiple sequence alignment - TraesCS7A01G018000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G018000 chr7A 100.000 2915 0 0 1 2915 7668382 7671296 0.000000e+00 5384.0
1 TraesCS7A01G018000 chr7A 85.028 2351 223 54 627 2915 7633842 7636125 0.000000e+00 2272.0
2 TraesCS7A01G018000 chr7A 81.953 1147 185 14 1212 2343 7629078 7630217 0.000000e+00 952.0
3 TraesCS7A01G018000 chr7A 86.275 510 51 12 2413 2915 7630309 7630806 1.190000e-148 536.0
4 TraesCS7A01G018000 chr7A 76.842 190 35 9 296 481 19444489 19444305 6.650000e-17 99.0
5 TraesCS7A01G018000 chr4A 93.998 2216 71 18 732 2915 733640566 733638381 0.000000e+00 3299.0
6 TraesCS7A01G018000 chr4A 82.118 1152 174 17 1218 2343 733671918 733670773 0.000000e+00 957.0
7 TraesCS7A01G018000 chr4A 82.035 1130 188 10 1219 2340 733741623 733742745 0.000000e+00 948.0
8 TraesCS7A01G018000 chr4A 91.236 696 51 5 1 694 733644913 733644226 0.000000e+00 939.0
9 TraesCS7A01G018000 chr4A 90.989 566 46 2 1 566 733661864 733661304 0.000000e+00 758.0
10 TraesCS7A01G018000 chr4A 80.000 765 127 15 1599 2343 733761469 733762227 2.560000e-150 542.0
11 TraesCS7A01G018000 chr4A 86.842 494 52 9 1 482 415579188 415579680 9.190000e-150 540.0
12 TraesCS7A01G018000 chr4A 85.151 431 46 12 2492 2915 733762369 733762788 2.680000e-115 425.0
13 TraesCS7A01G018000 chr4A 83.879 397 55 5 1212 1602 733760293 733760686 1.280000e-98 370.0
14 TraesCS7A01G018000 chr4A 79.448 326 50 9 2406 2728 733637885 733637574 6.330000e-52 215.0
15 TraesCS7A01G018000 chr4A 86.500 200 20 6 2406 2599 733670686 733670488 2.280000e-51 213.0
16 TraesCS7A01G018000 chr4A 79.641 334 36 12 815 1121 733759891 733760219 8.180000e-51 211.0
17 TraesCS7A01G018000 chr4A 78.248 331 41 15 817 1121 733672323 733671998 1.780000e-42 183.0
18 TraesCS7A01G018000 chr7D 88.369 1754 185 10 1169 2915 6582446 6584187 0.000000e+00 2091.0
19 TraesCS7A01G018000 chr7D 82.332 1132 172 16 1233 2343 6491306 6492430 0.000000e+00 957.0
20 TraesCS7A01G018000 chr7D 85.185 513 57 11 2413 2915 6492522 6493025 2.590000e-140 508.0
21 TraesCS7A01G018000 chr7D 77.931 580 75 20 549 1090 6581836 6582400 2.180000e-81 313.0
22 TraesCS7A01G018000 chr7D 77.016 496 69 19 967 1447 6465082 6464617 2.900000e-60 243.0
23 TraesCS7A01G018000 chr7D 80.000 230 27 7 905 1121 6490983 6491206 5.030000e-33 152.0
24 TraesCS7A01G018000 chr7D 80.315 127 20 5 1267 1390 75806765 75806641 1.110000e-14 91.6
25 TraesCS7A01G018000 chr7D 85.185 54 6 2 334 385 526296666 526296613 1.000000e-03 54.7
26 TraesCS7A01G018000 chr6B 87.755 196 19 5 1 195 716007920 716008111 1.050000e-54 224.0
27 TraesCS7A01G018000 chr6B 90.164 61 5 1 310 370 183316826 183316767 8.660000e-11 78.7
28 TraesCS7A01G018000 chr2D 86.857 175 19 2 484 657 123511129 123511300 2.960000e-45 193.0
29 TraesCS7A01G018000 chr2A 85.632 174 20 2 484 657 128510877 128511045 8.300000e-41 178.0
30 TraesCS7A01G018000 chr7B 89.076 119 12 1 7 125 666516299 666516182 2.340000e-31 147.0
31 TraesCS7A01G018000 chr7B 88.235 119 13 1 7 125 666509757 666509640 1.090000e-29 141.0
32 TraesCS7A01G018000 chr1B 77.707 157 33 2 1246 1401 643032683 643032528 8.600000e-16 95.3
33 TraesCS7A01G018000 chr1B 78.070 114 22 3 249 361 164828987 164829098 5.210000e-08 69.4
34 TraesCS7A01G018000 chr1D 72.238 353 77 13 24 360 109125398 109125745 4.000000e-14 89.8
35 TraesCS7A01G018000 chr1A 91.667 48 2 2 17 64 299991357 299991312 6.740000e-07 65.8
36 TraesCS7A01G018000 chr6A 84.848 66 5 5 317 380 409079023 409079085 8.720000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G018000 chr7A 7668382 7671296 2914 False 5384.000000 5384 100.000000 1 2915 1 chr7A.!!$F1 2914
1 TraesCS7A01G018000 chr7A 7629078 7636125 7047 False 1253.333333 2272 84.418667 627 2915 3 chr7A.!!$F2 2288
2 TraesCS7A01G018000 chr4A 733637574 733644913 7339 True 1484.333333 3299 88.227333 1 2915 3 chr4A.!!$R2 2914
3 TraesCS7A01G018000 chr4A 733741623 733742745 1122 False 948.000000 948 82.035000 1219 2340 1 chr4A.!!$F2 1121
4 TraesCS7A01G018000 chr4A 733661304 733661864 560 True 758.000000 758 90.989000 1 566 1 chr4A.!!$R1 565
5 TraesCS7A01G018000 chr4A 733670488 733672323 1835 True 451.000000 957 82.288667 817 2599 3 chr4A.!!$R3 1782
6 TraesCS7A01G018000 chr4A 733759891 733762788 2897 False 387.000000 542 82.167750 815 2915 4 chr4A.!!$F3 2100
7 TraesCS7A01G018000 chr7D 6581836 6584187 2351 False 1202.000000 2091 83.150000 549 2915 2 chr7D.!!$F2 2366
8 TraesCS7A01G018000 chr7D 6490983 6493025 2042 False 539.000000 957 82.505667 905 2915 3 chr7D.!!$F1 2010

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
627 630 0.107703 CCCAGTTAAGCCAGCGATGA 60.108 55.0 0.06 0.0 0.0 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2252 10923 0.110486 ACTTTCCCGCTGTCCATGTT 59.89 50.0 0.0 0.0 0.0 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 5.350914 CACCATTTGCTTTGAAGAACAACAA 59.649 36.000 0.00 0.00 38.29 2.83
55 56 6.732531 TGAAGAACAACAAGCTATCATCTG 57.267 37.500 0.00 0.00 0.00 2.90
64 65 6.630444 ACAAGCTATCATCTGCAAATAAGG 57.370 37.500 0.00 0.00 0.00 2.69
85 86 2.282603 GGTTAACAAGGGGCGCCA 60.283 61.111 30.85 1.46 0.00 5.69
127 128 4.831710 CACCCATCTGAGATGACTGATCTA 59.168 45.833 23.29 0.00 41.91 1.98
133 134 7.417003 CCATCTGAGATGACTGATCTATGGATC 60.417 44.444 23.29 11.92 42.70 3.36
140 141 7.615365 AGATGACTGATCTATGGATCTAAGGAC 59.385 40.741 18.64 8.87 46.18 3.85
145 146 2.552743 TCTATGGATCTAAGGACGCACG 59.447 50.000 0.00 0.00 0.00 5.34
162 163 2.768492 CGAAATGCCCTCTGCTGCC 61.768 63.158 0.00 0.00 42.00 4.85
167 168 2.598394 GCCCTCTGCTGCCAACAA 60.598 61.111 0.00 0.00 36.87 2.83
178 179 3.055819 TGCTGCCAACAAAAACAGGTAAA 60.056 39.130 0.00 0.00 0.00 2.01
209 210 4.042311 AGGATCTCCTAGACGAATAGCTCA 59.958 45.833 0.00 0.00 46.48 4.26
228 229 7.856145 AGCTCATGAAGATTTAAATTCGTCT 57.144 32.000 1.43 0.00 0.00 4.18
261 262 4.641989 ACATTGAACAAAACTGAGCAGACT 59.358 37.500 4.21 0.00 0.00 3.24
264 265 6.751514 TTGAACAAAACTGAGCAGACTAAA 57.248 33.333 4.21 0.00 0.00 1.85
266 267 6.728200 TGAACAAAACTGAGCAGACTAAATG 58.272 36.000 4.21 0.00 0.00 2.32
307 308 4.522022 ATCTTTCAGAGAAGCCAAGTTTGG 59.478 41.667 6.53 6.53 43.85 3.28
329 330 4.139786 GGCATGATGGCTCTCAAGATAAA 58.860 43.478 12.14 0.00 40.14 1.40
383 384 8.635328 TCATATGAAGCTTAAATGCACAATGAT 58.365 29.630 1.98 0.00 34.99 2.45
384 385 9.256477 CATATGAAGCTTAAATGCACAATGATT 57.744 29.630 0.00 0.00 34.99 2.57
409 410 0.455410 TGACTGCTTTGTTGCGCTTT 59.545 45.000 9.73 0.00 35.36 3.51
438 439 9.357652 GAAGTGCAAACATTCATATACAACAAT 57.642 29.630 0.00 0.00 0.00 2.71
475 476 1.029681 GGCGACCTGGAACAAAAGTT 58.970 50.000 0.00 0.00 38.70 2.66
524 527 1.164411 CAATACCTCACCGCAGCAAA 58.836 50.000 0.00 0.00 0.00 3.68
525 528 1.745087 CAATACCTCACCGCAGCAAAT 59.255 47.619 0.00 0.00 0.00 2.32
527 530 1.904287 TACCTCACCGCAGCAAATTT 58.096 45.000 0.00 0.00 0.00 1.82
530 533 2.625790 ACCTCACCGCAGCAAATTTTTA 59.374 40.909 0.00 0.00 0.00 1.52
561 564 4.440826 TTTGTAGGCCCAGTAAAGTGAA 57.559 40.909 0.00 0.00 0.00 3.18
624 627 2.046314 GCCCAGTTAAGCCAGCGA 60.046 61.111 0.00 0.00 0.00 4.93
625 628 1.452108 GCCCAGTTAAGCCAGCGAT 60.452 57.895 0.00 0.00 0.00 4.58
627 630 0.107703 CCCAGTTAAGCCAGCGATGA 60.108 55.000 0.06 0.00 0.00 2.92
628 631 1.475751 CCCAGTTAAGCCAGCGATGAT 60.476 52.381 0.06 0.00 0.00 2.45
629 632 1.600957 CCAGTTAAGCCAGCGATGATG 59.399 52.381 0.06 0.00 0.00 3.07
630 633 1.600957 CAGTTAAGCCAGCGATGATGG 59.399 52.381 0.06 0.00 42.66 3.51
633 4772 3.324846 AGTTAAGCCAGCGATGATGGATA 59.675 43.478 0.06 0.00 42.34 2.59
683 4859 3.733960 TCGAGCACGACGGACTGG 61.734 66.667 0.88 0.00 43.81 4.00
696 4872 3.562182 ACGGACTGGAGAAAATTTTGGT 58.438 40.909 8.47 0.00 0.00 3.67
702 4878 6.374613 GGACTGGAGAAAATTTTGGTAGGTAG 59.625 42.308 8.47 0.71 0.00 3.18
705 4881 8.101419 ACTGGAGAAAATTTTGGTAGGTAGTAG 58.899 37.037 8.47 0.00 0.00 2.57
711 4908 9.159364 GAAAATTTTGGTAGGTAGTAGTGGTAG 57.841 37.037 8.47 0.00 0.00 3.18
725 4922 4.003584 AGTGGTAGGAAGTAATAGCCCA 57.996 45.455 0.00 0.00 0.00 5.36
853 8640 1.087501 GGAAGAATCGTGAAGGCCAC 58.912 55.000 5.01 0.00 42.30 5.01
856 8643 1.002624 GAATCGTGAAGGCCACCCA 60.003 57.895 5.01 0.00 42.76 4.51
922 8737 1.931635 AGAGCTCCGAAACCTTCTCT 58.068 50.000 10.93 0.00 0.00 3.10
1123 8949 9.305555 TCTTCCAATCAATGAATCTTTCTTTCT 57.694 29.630 0.00 0.00 0.00 2.52
1126 8952 9.182214 TCCAATCAATGAATCTTTCTTTCTAGG 57.818 33.333 0.00 0.00 0.00 3.02
1127 8953 8.411683 CCAATCAATGAATCTTTCTTTCTAGGG 58.588 37.037 0.00 0.00 0.00 3.53
1160 8986 7.264373 TCAATCTTTCTTTCTTGTGTCTTCC 57.736 36.000 0.00 0.00 0.00 3.46
1198 9024 5.621193 TCGGGATCTTAATCAATCTTTCCC 58.379 41.667 0.00 0.00 38.55 3.97
1696 10346 1.430992 TCCCTTCCTGGTTTTCGACT 58.569 50.000 0.00 0.00 0.00 4.18
1697 10347 1.772453 TCCCTTCCTGGTTTTCGACTT 59.228 47.619 0.00 0.00 0.00 3.01
1701 10351 3.467803 CTTCCTGGTTTTCGACTTGTCT 58.532 45.455 0.00 0.00 0.00 3.41
1818 10468 3.144285 TGGGGACACAGACGGAAC 58.856 61.111 0.00 0.00 33.40 3.62
1910 10563 9.710818 TGGAACTTTCATAACTATACTAGACCT 57.289 33.333 0.00 0.00 0.00 3.85
1988 10644 1.751544 GGTTATGGTTCGGTGGGGC 60.752 63.158 0.00 0.00 0.00 5.80
2252 10923 2.791655 AGATGGTGAGTCTGTCGTACA 58.208 47.619 0.00 0.00 0.00 2.90
2355 11026 0.612744 TTGGCTCACGGATGATCACA 59.387 50.000 0.00 0.00 33.22 3.58
2359 11030 2.076100 GCTCACGGATGATCACAAACA 58.924 47.619 0.00 0.00 33.22 2.83
2366 11037 3.501828 CGGATGATCACAAACACCTTTGA 59.498 43.478 0.00 0.00 39.43 2.69
2398 11073 1.000955 CTTCTAGTTCCGTGGCACTGT 59.999 52.381 16.72 0.00 0.00 3.55
2421 11136 3.119193 CTGCAGCCGTTTTGTGGT 58.881 55.556 0.00 0.00 0.00 4.16
2499 11223 5.221048 GGGTAATGCTTGCTTAGTTGTATGG 60.221 44.000 0.00 0.00 0.00 2.74
2787 11524 4.776308 ACGAAGGGTAAGGAGATGTTAGTT 59.224 41.667 0.00 0.00 0.00 2.24
2889 11634 9.768215 ATTATCTCTTTATTTTGTTCAGGGGAA 57.232 29.630 0.00 0.00 0.00 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.469657 TCTTCAAAGCAAATGGTGTAGGT 58.530 39.130 0.00 0.00 0.00 3.08
44 45 4.105377 ACCCCTTATTTGCAGATGATAGCT 59.895 41.667 0.00 0.00 0.00 3.32
55 56 4.322424 CCTTGTTAACCACCCCTTATTTGC 60.322 45.833 2.48 0.00 0.00 3.68
64 65 1.974875 CGCCCCTTGTTAACCACCC 60.975 63.158 2.48 0.00 0.00 4.61
85 86 2.423538 GTGGAATTCAAGTTGCGCCTAT 59.576 45.455 4.18 0.00 0.00 2.57
127 128 1.399714 TCGTGCGTCCTTAGATCCAT 58.600 50.000 0.00 0.00 0.00 3.41
133 134 3.877801 GCATTTCGTGCGTCCTTAG 57.122 52.632 0.00 0.00 45.23 2.18
162 163 5.845391 TCTCCCTTTACCTGTTTTTGTTG 57.155 39.130 0.00 0.00 0.00 3.33
167 168 6.678857 AGATCCTATCTCCCTTTACCTGTTTT 59.321 38.462 0.00 0.00 33.42 2.43
196 197 8.948631 TTTAAATCTTCATGAGCTATTCGTCT 57.051 30.769 0.00 0.00 0.00 4.18
238 239 4.641989 AGTCTGCTCAGTTTTGTTCAATGT 59.358 37.500 0.00 0.00 0.00 2.71
261 262 7.998383 AGATGGGTCACTATTGTTATGCATTTA 59.002 33.333 3.54 0.00 0.00 1.40
264 265 5.945310 AGATGGGTCACTATTGTTATGCAT 58.055 37.500 3.79 3.79 0.00 3.96
266 267 6.318648 TGAAAGATGGGTCACTATTGTTATGC 59.681 38.462 0.00 0.00 0.00 3.14
307 308 2.273538 ATCTTGAGAGCCATCATGCC 57.726 50.000 0.00 0.00 0.00 4.40
329 330 4.509122 GGCATATGATAGGGTTGAATGGGT 60.509 45.833 6.97 0.00 0.00 4.51
372 373 5.808540 GCAGTCAAACATAATCATTGTGCAT 59.191 36.000 0.00 0.00 30.71 3.96
383 384 4.041049 CGCAACAAAGCAGTCAAACATAA 58.959 39.130 0.00 0.00 0.00 1.90
384 385 3.626977 CGCAACAAAGCAGTCAAACATA 58.373 40.909 0.00 0.00 0.00 2.29
438 439 8.251026 CAGGTCGCCTTATAACTGATAATATCA 58.749 37.037 2.68 2.68 37.76 2.15
475 476 4.442893 CGACCTCCCATTTAGCTACAATCA 60.443 45.833 0.00 0.00 0.00 2.57
537 540 6.129414 TCACTTTACTGGGCCTACAAATTA 57.871 37.500 4.53 0.00 0.00 1.40
561 564 1.051812 CCTGATCCTTCGTAGGCCAT 58.948 55.000 5.01 0.00 41.69 4.40
620 623 3.511540 TCGATCCTTTATCCATCATCGCT 59.488 43.478 0.00 0.00 34.49 4.93
621 624 3.849911 TCGATCCTTTATCCATCATCGC 58.150 45.455 0.00 0.00 34.49 4.58
622 625 4.428209 CCTCGATCCTTTATCCATCATCG 58.572 47.826 0.00 0.00 35.54 3.84
623 626 4.187694 GCCTCGATCCTTTATCCATCATC 58.812 47.826 0.00 0.00 0.00 2.92
624 627 3.054802 GGCCTCGATCCTTTATCCATCAT 60.055 47.826 0.00 0.00 0.00 2.45
625 628 2.303022 GGCCTCGATCCTTTATCCATCA 59.697 50.000 0.00 0.00 0.00 3.07
627 630 1.630878 GGGCCTCGATCCTTTATCCAT 59.369 52.381 0.84 0.00 0.00 3.41
628 631 1.056660 GGGCCTCGATCCTTTATCCA 58.943 55.000 0.84 0.00 0.00 3.41
629 632 1.002544 CTGGGCCTCGATCCTTTATCC 59.997 57.143 4.53 0.00 0.00 2.59
630 633 1.609320 GCTGGGCCTCGATCCTTTATC 60.609 57.143 4.53 0.00 0.00 1.75
633 4772 2.592308 GCTGGGCCTCGATCCTTT 59.408 61.111 4.53 0.00 0.00 3.11
681 4857 7.881232 CACTACTACCTACCAAAATTTTCTCCA 59.119 37.037 0.00 0.00 0.00 3.86
683 4859 7.881751 ACCACTACTACCTACCAAAATTTTCTC 59.118 37.037 0.00 0.00 0.00 2.87
696 4872 8.160106 GCTATTACTTCCTACCACTACTACCTA 58.840 40.741 0.00 0.00 0.00 3.08
702 4878 4.897670 TGGGCTATTACTTCCTACCACTAC 59.102 45.833 0.00 0.00 0.00 2.73
705 4881 4.976540 ATGGGCTATTACTTCCTACCAC 57.023 45.455 0.00 0.00 0.00 4.16
807 8585 8.904834 GGAATTCTGCCGAGATAATCTACTATA 58.095 37.037 5.23 0.00 0.00 1.31
808 8586 7.777095 GGAATTCTGCCGAGATAATCTACTAT 58.223 38.462 5.23 0.00 0.00 2.12
809 8587 7.159322 GGAATTCTGCCGAGATAATCTACTA 57.841 40.000 5.23 0.00 0.00 1.82
853 8640 1.374758 GCTGTGTTCCTCGAGTGGG 60.375 63.158 12.31 0.00 0.00 4.61
856 8643 2.651361 CGGCTGTGTTCCTCGAGT 59.349 61.111 12.31 0.00 0.00 4.18
1008 8823 4.168291 GCTCTGCTCCTTCCCCGG 62.168 72.222 0.00 0.00 0.00 5.73
1122 8948 6.657875 AGAAAGATTGATTGGAAGACCCTAG 58.342 40.000 0.00 0.00 35.38 3.02
1123 8949 6.642733 AGAAAGATTGATTGGAAGACCCTA 57.357 37.500 0.00 0.00 35.38 3.53
1124 8950 5.527026 AGAAAGATTGATTGGAAGACCCT 57.473 39.130 0.00 0.00 35.38 4.34
1125 8951 6.435591 AGAAAGAAAGATTGATTGGAAGACCC 59.564 38.462 0.00 0.00 34.81 4.46
1126 8952 7.459795 AGAAAGAAAGATTGATTGGAAGACC 57.540 36.000 0.00 0.00 0.00 3.85
1127 8953 8.355913 ACAAGAAAGAAAGATTGATTGGAAGAC 58.644 33.333 0.00 0.00 0.00 3.01
1160 8986 4.934001 AGATCCCGATCGATTCATTGATTG 59.066 41.667 18.66 0.00 42.48 2.67
1198 9024 2.202703 CTTCTACGAACGGGCCGG 60.203 66.667 31.78 15.34 0.00 6.13
1423 9287 1.372087 CCGGACAGATTGCTGAAGCC 61.372 60.000 0.00 0.00 45.17 4.35
1673 10323 4.227527 AGTCGAAAACCAGGAAGGGATAAT 59.772 41.667 0.00 0.00 43.89 1.28
1696 10346 2.466846 GAAACGAGACGGAACAGACAA 58.533 47.619 0.00 0.00 0.00 3.18
1697 10347 1.598676 CGAAACGAGACGGAACAGACA 60.599 52.381 0.00 0.00 0.00 3.41
1701 10351 0.658244 CGACGAAACGAGACGGAACA 60.658 55.000 0.00 0.00 35.09 3.18
1796 10446 4.016706 GTCTGTGTCCCCACCCCG 62.017 72.222 0.00 0.00 41.09 5.73
1910 10563 1.228862 GGCAAAGCTCCCCCTCAAA 60.229 57.895 0.00 0.00 0.00 2.69
1988 10644 0.967887 TGAAGGAGTCCCTGAGAGCG 60.968 60.000 5.25 0.00 43.48 5.03
2138 10809 2.509052 TGGCGACGATAATCCTCTTG 57.491 50.000 0.00 0.00 0.00 3.02
2252 10923 0.110486 ACTTTCCCGCTGTCCATGTT 59.890 50.000 0.00 0.00 0.00 2.71
2421 11136 2.098280 CGGTGACCAACATTGTTCAACA 59.902 45.455 7.80 0.00 37.17 3.33
2531 11255 8.198109 AGTGACCACATTAATCAGTACTACATC 58.802 37.037 0.00 0.00 0.00 3.06
2621 11345 6.552008 ACACAAATGGAAATAAAGAGGAGGA 58.448 36.000 0.00 0.00 0.00 3.71
2622 11346 6.403636 CGACACAAATGGAAATAAAGAGGAGG 60.404 42.308 0.00 0.00 0.00 4.30
2623 11347 6.149474 ACGACACAAATGGAAATAAAGAGGAG 59.851 38.462 0.00 0.00 0.00 3.69
2699 11428 2.719739 ACAAAGACAGGGCATCATCAG 58.280 47.619 0.00 0.00 0.00 2.90
2787 11524 8.450578 AAGCTCCATATCGTTTCATAAATGAA 57.549 30.769 1.23 1.23 44.42 2.57
2889 11634 5.796424 ACAGGCAGAATCATTTTGTTCTT 57.204 34.783 0.00 0.00 32.60 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.