Multiple sequence alignment - TraesCS7A01G017700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G017700 chr7A 100.000 3444 0 0 1 3444 7597370 7600813 0.000000e+00 6360
1 TraesCS7A01G017700 chr7A 100.000 301 0 0 3683 3983 7601052 7601352 1.250000e-154 556
2 TraesCS7A01G017700 chr7D 91.058 1465 96 13 1815 3269 6484595 6486034 0.000000e+00 1947
3 TraesCS7A01G017700 chr7D 80.792 859 87 44 559 1358 6482935 6483774 5.700000e-168 601
4 TraesCS7A01G017700 chr7D 89.419 482 40 4 1345 1816 6483988 6484468 7.370000e-167 597
5 TraesCS7A01G017700 chr7D 84.727 550 46 16 1 538 6482423 6482946 2.120000e-142 516
6 TraesCS7A01G017700 chr7D 93.103 232 15 1 3752 3983 6486058 6486288 4.930000e-89 339
7 TraesCS7A01G017700 chr4A 89.896 1445 107 21 1849 3263 733694510 733693075 0.000000e+00 1823
8 TraesCS7A01G017700 chr4A 82.982 1281 111 52 559 1769 733695766 733694523 0.000000e+00 1059


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G017700 chr7A 7597370 7601352 3982 False 3458 6360 100.0000 1 3983 2 chr7A.!!$F1 3982
1 TraesCS7A01G017700 chr7D 6482423 6486288 3865 False 800 1947 87.8198 1 3983 5 chr7D.!!$F1 3982
2 TraesCS7A01G017700 chr4A 733693075 733695766 2691 True 1441 1823 86.4390 559 3263 2 chr4A.!!$R1 2704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
346 356 0.031721 AACTCTTTTCGCCTCGTCGT 59.968 50.0 0.0 0.0 0.00 4.34 F
1130 1204 0.738975 CTAATCCCGACTGACTCGCA 59.261 55.0 0.0 0.0 41.46 5.10 F
2407 2881 0.737715 CTGAGAAGGGAAACGCCGAG 60.738 60.0 0.0 0.0 37.63 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1483 1821 0.920763 TTGATCTCCCCCTGGCACAT 60.921 55.0 0.00 0.00 38.2 3.21 R
2496 2970 0.323178 AGCTTGGGTTGATCTGGCAG 60.323 55.0 8.58 8.58 0.0 4.85 R
3379 3883 0.400525 CCTCATAGGGGGAGCTGGAA 60.401 60.0 0.00 0.00 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 1.948834 TGTCAGAGGTGCAACATGTTG 59.051 47.619 30.20 30.20 39.98 3.33
70 71 0.241749 AACATGTTGCTGCATCACCG 59.758 50.000 11.07 11.74 0.00 4.94
87 88 1.080298 CCGCGTGCCTATGTTTGTAA 58.920 50.000 4.92 0.00 0.00 2.41
97 98 7.903431 CGTGCCTATGTTTGTAAATAGTTCTTC 59.097 37.037 0.00 0.00 0.00 2.87
114 115 1.661112 CTTCGAGATGTTTTCGGGCTC 59.339 52.381 0.00 0.00 38.54 4.70
123 124 3.334691 TGTTTTCGGGCTCTTAGATGTG 58.665 45.455 0.00 0.00 0.00 3.21
131 132 3.454812 GGGCTCTTAGATGTGGGAACTTA 59.545 47.826 0.00 0.00 0.00 2.24
143 144 9.030452 AGATGTGGGAACTTATATCTATCTGTC 57.970 37.037 0.00 0.00 0.00 3.51
171 172 3.694072 GGCTTTGTGGCATGTATAGTCAA 59.306 43.478 0.00 0.00 41.37 3.18
194 195 1.456544 CATGGTTGCGCATGTTGTTTC 59.543 47.619 12.75 0.00 0.00 2.78
203 204 1.610624 GCATGTTGTTTCGGAGAGGGA 60.611 52.381 0.00 0.00 38.43 4.20
204 205 2.350522 CATGTTGTTTCGGAGAGGGAG 58.649 52.381 0.00 0.00 38.43 4.30
219 220 1.153565 AGGGAGGAGGGGAAAGTGTTA 59.846 52.381 0.00 0.00 0.00 2.41
220 221 2.206223 GGGAGGAGGGGAAAGTGTTAT 58.794 52.381 0.00 0.00 0.00 1.89
222 223 3.784202 GGGAGGAGGGGAAAGTGTTATTA 59.216 47.826 0.00 0.00 0.00 0.98
232 234 5.240121 GGAAAGTGTTATTACCCACGAAGA 58.760 41.667 0.00 0.00 36.69 2.87
235 237 7.094506 GGAAAGTGTTATTACCCACGAAGAAAT 60.095 37.037 0.00 0.00 36.69 2.17
242 244 2.691927 ACCCACGAAGAAATACCGTTC 58.308 47.619 0.00 0.00 33.96 3.95
243 245 2.301009 ACCCACGAAGAAATACCGTTCT 59.699 45.455 0.00 0.00 39.60 3.01
263 265 7.253618 CCGTTCTTGTGTGTAATTCTTTGTTTG 60.254 37.037 0.00 0.00 0.00 2.93
267 269 7.338196 TCTTGTGTGTAATTCTTTGTTTGGAGA 59.662 33.333 0.00 0.00 0.00 3.71
282 288 8.463930 TTGTTTGGAGATGATTTTGTAAGTCT 57.536 30.769 0.00 0.00 0.00 3.24
300 306 8.015658 TGTAAGTCTATTATCGTCATCGTCATG 58.984 37.037 0.00 0.00 38.33 3.07
301 307 6.803154 AGTCTATTATCGTCATCGTCATGA 57.197 37.500 0.00 0.00 36.62 3.07
303 309 6.024664 GTCTATTATCGTCATCGTCATGAGG 58.975 44.000 9.16 9.16 43.52 3.86
312 322 0.546122 TCGTCATGAGGGGATTTGGG 59.454 55.000 15.05 0.00 0.00 4.12
338 348 2.977405 ATGCAGTGAACTCTTTTCGC 57.023 45.000 0.00 0.00 0.00 4.70
345 355 0.708918 GAACTCTTTTCGCCTCGTCG 59.291 55.000 0.00 0.00 0.00 5.12
346 356 0.031721 AACTCTTTTCGCCTCGTCGT 59.968 50.000 0.00 0.00 0.00 4.34
350 360 1.135859 TCTTTTCGCCTCGTCGTCTAC 60.136 52.381 0.00 0.00 0.00 2.59
351 361 0.877071 TTTTCGCCTCGTCGTCTACT 59.123 50.000 0.00 0.00 0.00 2.57
353 363 1.284657 TTCGCCTCGTCGTCTACTAG 58.715 55.000 0.00 0.00 0.00 2.57
354 364 1.150567 TCGCCTCGTCGTCTACTAGC 61.151 60.000 0.00 0.00 0.00 3.42
355 365 1.152989 CGCCTCGTCGTCTACTAGCT 61.153 60.000 0.00 0.00 0.00 3.32
357 367 1.794116 GCCTCGTCGTCTACTAGCTAG 59.206 57.143 19.44 19.44 0.00 3.42
358 368 2.802774 GCCTCGTCGTCTACTAGCTAGT 60.803 54.545 28.50 28.50 40.24 2.57
359 369 3.456280 CCTCGTCGTCTACTAGCTAGTT 58.544 50.000 30.40 15.09 37.73 2.24
360 370 3.490526 CCTCGTCGTCTACTAGCTAGTTC 59.509 52.174 30.40 19.03 37.73 3.01
363 373 3.301707 CGTCGTCTACTAGCTAGTTCGTG 60.302 52.174 30.40 21.31 37.73 4.35
364 374 3.616379 GTCGTCTACTAGCTAGTTCGTGT 59.384 47.826 30.40 8.94 37.73 4.49
365 375 4.092675 GTCGTCTACTAGCTAGTTCGTGTT 59.907 45.833 30.40 7.34 37.73 3.32
366 376 4.092529 TCGTCTACTAGCTAGTTCGTGTTG 59.907 45.833 30.40 14.33 37.73 3.33
367 377 4.142945 CGTCTACTAGCTAGTTCGTGTTGT 60.143 45.833 30.40 6.71 37.73 3.32
368 378 5.616424 CGTCTACTAGCTAGTTCGTGTTGTT 60.616 44.000 30.40 5.11 37.73 2.83
369 379 6.401474 CGTCTACTAGCTAGTTCGTGTTGTTA 60.401 42.308 30.40 8.47 37.73 2.41
370 380 7.301054 GTCTACTAGCTAGTTCGTGTTGTTAA 58.699 38.462 30.40 7.96 37.73 2.01
371 381 7.805071 GTCTACTAGCTAGTTCGTGTTGTTAAA 59.195 37.037 30.40 7.76 37.73 1.52
372 382 8.517878 TCTACTAGCTAGTTCGTGTTGTTAAAT 58.482 33.333 30.40 3.29 37.73 1.40
373 383 9.778993 CTACTAGCTAGTTCGTGTTGTTAAATA 57.221 33.333 30.40 6.69 37.73 1.40
374 384 8.684973 ACTAGCTAGTTCGTGTTGTTAAATAG 57.315 34.615 20.95 0.00 31.13 1.73
375 385 8.302438 ACTAGCTAGTTCGTGTTGTTAAATAGT 58.698 33.333 20.95 0.00 31.13 2.12
376 386 7.958053 AGCTAGTTCGTGTTGTTAAATAGTT 57.042 32.000 0.00 0.00 0.00 2.24
377 387 7.793902 AGCTAGTTCGTGTTGTTAAATAGTTG 58.206 34.615 0.00 0.00 0.00 3.16
378 388 7.654520 AGCTAGTTCGTGTTGTTAAATAGTTGA 59.345 33.333 0.00 0.00 0.00 3.18
379 389 8.440833 GCTAGTTCGTGTTGTTAAATAGTTGAT 58.559 33.333 0.00 0.00 0.00 2.57
426 436 8.828688 TGATACTCAAATCATCAATCAGCTAG 57.171 34.615 0.00 0.00 30.92 3.42
441 451 8.140628 TCAATCAGCTAGTAACATTTTGCAAAA 58.859 29.630 25.76 25.76 0.00 2.44
466 476 8.703378 ATTGCCTTGATTTTTAATCCCAAAAA 57.297 26.923 0.00 0.00 40.58 1.94
511 523 8.970691 TCAGAAAAGAACAAAATGCTATTAGC 57.029 30.769 8.80 8.80 42.82 3.09
571 583 7.503566 TCTTTTTGAGACAAGAATGGAGTCAAT 59.496 33.333 0.00 0.00 34.80 2.57
585 597 3.772025 GGAGTCAATGGAAGGAGAGAAGA 59.228 47.826 0.00 0.00 0.00 2.87
586 598 4.223923 GGAGTCAATGGAAGGAGAGAAGAA 59.776 45.833 0.00 0.00 0.00 2.52
587 599 5.418676 GAGTCAATGGAAGGAGAGAAGAAG 58.581 45.833 0.00 0.00 0.00 2.85
590 602 3.625649 ATGGAAGGAGAGAAGAAGTGC 57.374 47.619 0.00 0.00 0.00 4.40
596 608 1.066502 GGAGAGAAGAAGTGCTGGTCC 60.067 57.143 0.00 0.00 0.00 4.46
649 661 0.746923 GCCTTGCTTAACCCTACCCG 60.747 60.000 0.00 0.00 0.00 5.28
651 663 0.746923 CTTGCTTAACCCTACCCGCC 60.747 60.000 0.00 0.00 0.00 6.13
655 667 1.229593 TTAACCCTACCCGCCACCT 60.230 57.895 0.00 0.00 0.00 4.00
735 767 2.684735 GTCCGTCTCTCTCCCCCT 59.315 66.667 0.00 0.00 0.00 4.79
739 771 1.152839 CGTCTCTCTCCCCCTCTCC 60.153 68.421 0.00 0.00 0.00 3.71
740 772 1.152839 GTCTCTCTCCCCCTCTCCG 60.153 68.421 0.00 0.00 0.00 4.63
741 773 2.520741 CTCTCTCCCCCTCTCCGC 60.521 72.222 0.00 0.00 0.00 5.54
742 774 4.144727 TCTCTCCCCCTCTCCGCC 62.145 72.222 0.00 0.00 0.00 6.13
777 809 1.306633 GGCCTCTAAACCCCCTTGG 59.693 63.158 0.00 0.00 41.37 3.61
837 897 1.069204 TGGTCTGCTAGATTGATCGCC 59.931 52.381 0.00 0.00 0.00 5.54
844 904 3.244665 TGCTAGATTGATCGCCCATTCAT 60.245 43.478 0.00 0.00 0.00 2.57
865 925 1.137675 TCCATTGATGACGCTCTCTGG 59.862 52.381 0.00 0.00 0.00 3.86
866 926 0.935898 CATTGATGACGCTCTCTGGC 59.064 55.000 0.00 0.00 0.00 4.85
976 1037 2.283966 ACCACCGTCCAGCTAGCT 60.284 61.111 12.68 12.68 0.00 3.32
1120 1194 3.893813 GGTAACTAAGCTCCTAATCCCGA 59.106 47.826 0.00 0.00 0.00 5.14
1121 1195 4.261952 GGTAACTAAGCTCCTAATCCCGAC 60.262 50.000 0.00 0.00 0.00 4.79
1124 1198 2.160721 AAGCTCCTAATCCCGACTGA 57.839 50.000 0.00 0.00 0.00 3.41
1128 1202 1.604755 CTCCTAATCCCGACTGACTCG 59.395 57.143 0.00 0.00 42.54 4.18
1130 1204 0.738975 CTAATCCCGACTGACTCGCA 59.261 55.000 0.00 0.00 41.46 5.10
1133 1207 1.532604 ATCCCGACTGACTCGCACAA 61.533 55.000 0.00 0.00 41.46 3.33
1136 1210 1.202417 CCCGACTGACTCGCACAATAT 60.202 52.381 0.00 0.00 41.46 1.28
1138 1212 3.043586 CCGACTGACTCGCACAATATAC 58.956 50.000 0.00 0.00 41.46 1.47
1141 1215 3.031736 ACTGACTCGCACAATATACCCT 58.968 45.455 0.00 0.00 0.00 4.34
1142 1216 3.181475 ACTGACTCGCACAATATACCCTG 60.181 47.826 0.00 0.00 0.00 4.45
1143 1217 2.764010 TGACTCGCACAATATACCCTGT 59.236 45.455 0.00 0.00 0.00 4.00
1145 1219 4.403113 TGACTCGCACAATATACCCTGTAA 59.597 41.667 0.00 0.00 0.00 2.41
1147 1221 5.357257 ACTCGCACAATATACCCTGTAAAG 58.643 41.667 0.00 0.00 0.00 1.85
1155 1229 7.663081 CACAATATACCCTGTAAAGATGATGCT 59.337 37.037 0.00 0.00 0.00 3.79
1174 1254 4.748892 TGCTCTGCTGTTACTCTGTTATC 58.251 43.478 0.00 0.00 0.00 1.75
1187 1269 5.748592 ACTCTGTTATCACGCAAGAAAAAC 58.251 37.500 0.00 0.00 43.62 2.43
1192 1279 6.655062 TGTTATCACGCAAGAAAAACTACTG 58.345 36.000 0.00 0.00 43.62 2.74
1194 1281 4.789095 TCACGCAAGAAAAACTACTGAC 57.211 40.909 0.00 0.00 43.62 3.51
1243 1333 6.727824 CACCATTTCTTTACAGGTGTCTAG 57.272 41.667 0.00 0.00 43.57 2.43
1244 1334 5.643777 CACCATTTCTTTACAGGTGTCTAGG 59.356 44.000 0.00 0.00 43.57 3.02
1281 1384 2.942376 CCAGCACACAGTTTAGTTGTCA 59.058 45.455 0.00 0.00 0.00 3.58
1282 1385 3.242739 CCAGCACACAGTTTAGTTGTCAC 60.243 47.826 0.00 0.00 0.00 3.67
1283 1386 3.623060 CAGCACACAGTTTAGTTGTCACT 59.377 43.478 0.00 0.00 36.99 3.41
1284 1387 4.094887 CAGCACACAGTTTAGTTGTCACTT 59.905 41.667 0.00 0.00 34.06 3.16
1285 1388 4.332819 AGCACACAGTTTAGTTGTCACTTC 59.667 41.667 0.00 0.00 34.06 3.01
1286 1389 4.495844 GCACACAGTTTAGTTGTCACTTCC 60.496 45.833 0.00 0.00 34.06 3.46
1287 1390 4.634004 CACACAGTTTAGTTGTCACTTCCA 59.366 41.667 0.00 0.00 34.06 3.53
1300 1403 5.984725 TGTCACTTCCAACTTCTAAGTCAA 58.015 37.500 0.00 0.00 38.57 3.18
1319 1422 5.300286 AGTCAATTCCAAGTGTTCCTTTCTG 59.700 40.000 0.00 0.00 0.00 3.02
1328 1431 5.140747 AGTGTTCCTTTCTGCTACTACTG 57.859 43.478 0.00 0.00 0.00 2.74
1341 1667 7.284074 TCTGCTACTACTGCTACTAGATTCTT 58.716 38.462 0.00 0.00 0.00 2.52
1366 1695 6.245408 AGTGTTAAAATATCCCAGACAGCAA 58.755 36.000 0.00 0.00 0.00 3.91
1390 1719 3.030291 TGAAAAGTTGACACATGCCCTT 58.970 40.909 0.00 0.00 0.00 3.95
1392 1721 4.081198 TGAAAAGTTGACACATGCCCTTTT 60.081 37.500 0.00 0.00 35.49 2.27
1397 1726 1.177401 GACACATGCCCTTTTCTCCC 58.823 55.000 0.00 0.00 0.00 4.30
1404 1733 2.910544 TGCCCTTTTCTCCCTGTACTA 58.089 47.619 0.00 0.00 0.00 1.82
1415 1744 8.548880 TTTCTCCCTGTACTATATTGCTAGTT 57.451 34.615 0.00 0.00 33.96 2.24
1502 1840 0.920763 ATGTGCCAGGGGGAGATCAA 60.921 55.000 0.00 0.00 35.59 2.57
1557 1895 1.875514 TGCAAAGAGTAAGCTGCTGTG 59.124 47.619 1.35 0.00 35.78 3.66
1558 1896 1.876156 GCAAAGAGTAAGCTGCTGTGT 59.124 47.619 1.35 0.00 0.00 3.72
1566 1904 2.857592 AAGCTGCTGTGTTTGTTCAG 57.142 45.000 1.35 0.00 35.12 3.02
1578 1919 7.959651 GCTGTGTTTGTTCAGTTCTTATATCAG 59.040 37.037 0.00 0.00 34.57 2.90
1640 1981 3.600388 ACAAGAAATAGTTCTCCGGCTG 58.400 45.455 5.80 3.12 43.59 4.85
1739 2080 1.267806 GATGTGTGAAGGCAACACAGG 59.732 52.381 20.38 0.00 46.53 4.00
1803 2144 2.300152 AGAAATGTCGCTCTCAGTGGAA 59.700 45.455 0.00 0.00 0.00 3.53
1805 2146 2.086054 ATGTCGCTCTCAGTGGAAAC 57.914 50.000 0.00 0.00 0.00 2.78
1808 2149 1.795286 GTCGCTCTCAGTGGAAACTTG 59.205 52.381 0.00 0.00 0.00 3.16
1816 2285 6.128526 GCTCTCAGTGGAAACTTGTACAATAC 60.129 42.308 9.13 0.00 0.00 1.89
1820 2289 7.870826 TCAGTGGAAACTTGTACAATACATTG 58.129 34.615 9.13 8.69 43.26 2.82
1919 2388 4.112634 AGCAATAGTTTGGGAGGTTTGA 57.887 40.909 0.00 0.00 33.22 2.69
1927 2396 4.832823 AGTTTGGGAGGTTTGATTACTTGG 59.167 41.667 0.00 0.00 0.00 3.61
1987 2456 7.214467 TGAATATGTTTTGGAACTGGACTTC 57.786 36.000 0.00 0.00 36.70 3.01
2005 2474 6.995686 TGGACTTCAATTATATATGGTTGCGT 59.004 34.615 0.00 2.11 0.00 5.24
2041 2514 7.120432 AGTGCTTTTATTTTCATCTCCAGTCTC 59.880 37.037 0.00 0.00 0.00 3.36
2115 2588 4.569943 ACAAACGTAGCAGTCAGATCATT 58.430 39.130 0.00 0.00 0.00 2.57
2329 2803 6.323482 TGGATTTTCAGGTTGAGAAATTGTCA 59.677 34.615 0.00 0.00 35.17 3.58
2407 2881 0.737715 CTGAGAAGGGAAACGCCGAG 60.738 60.000 0.00 0.00 37.63 4.63
2418 2892 0.811616 AACGCCGAGCAATCTCATCC 60.812 55.000 0.00 0.00 39.30 3.51
2478 2952 7.011763 CCGCAGATCTTAATATATGTTGATGGG 59.988 40.741 0.00 0.00 0.00 4.00
2481 2955 9.948964 CAGATCTTAATATATGTTGATGGGTCA 57.051 33.333 0.00 0.00 0.00 4.02
2484 2958 9.730705 ATCTTAATATATGTTGATGGGTCACTG 57.269 33.333 0.00 0.00 33.11 3.66
2496 2970 2.627699 TGGGTCACTGGAAAGAAAATGC 59.372 45.455 0.00 0.00 0.00 3.56
2501 2975 2.036217 CACTGGAAAGAAAATGCTGCCA 59.964 45.455 0.00 0.00 0.00 4.92
2519 2993 2.731572 CCAGATCAACCCAAGCTGATT 58.268 47.619 0.00 0.00 32.40 2.57
2539 3013 9.463443 GCTGATTCAAATTGTTGTACTAAACTT 57.537 29.630 0.00 0.00 36.07 2.66
2611 3085 4.701651 TCCCATTTTTACATCTGCACTCTG 59.298 41.667 0.00 0.00 0.00 3.35
2644 3118 8.523915 TGACAATTATGAATCAGCCAGTAATT 57.476 30.769 0.00 0.00 0.00 1.40
2646 3120 7.642669 ACAATTATGAATCAGCCAGTAATTCG 58.357 34.615 0.00 0.00 33.13 3.34
2670 3144 4.909305 TGCATCGATTTGAACTCGTTTTTC 59.091 37.500 4.89 0.00 37.40 2.29
2671 3145 4.909305 GCATCGATTTGAACTCGTTTTTCA 59.091 37.500 4.89 0.00 37.40 2.69
2673 3147 6.237045 GCATCGATTTGAACTCGTTTTTCATC 60.237 38.462 4.89 0.00 37.40 2.92
2676 3150 6.018262 TCGATTTGAACTCGTTTTTCATCAGT 60.018 34.615 4.89 0.00 37.40 3.41
2677 3151 6.300902 CGATTTGAACTCGTTTTTCATCAGTC 59.699 38.462 0.00 0.00 33.03 3.51
2678 3152 6.429791 TTTGAACTCGTTTTTCATCAGTCA 57.570 33.333 0.00 0.00 33.03 3.41
2712 3187 3.199946 TGACTGAGGGGGATGTTAATGTC 59.800 47.826 0.00 0.00 0.00 3.06
2990 3468 2.434185 GTGTTCATGAGGCGCCGA 60.434 61.111 23.20 12.86 0.00 5.54
3010 3488 6.381801 GCCGAATTGAGATTTTTCTTCTTCA 58.618 36.000 0.00 0.00 0.00 3.02
3080 3568 2.595386 GTGTTTTTGACGGGCATGATC 58.405 47.619 0.00 0.00 0.00 2.92
3084 3572 2.127271 TTTGACGGGCATGATCATGT 57.873 45.000 31.09 15.60 40.80 3.21
3085 3573 1.667236 TTGACGGGCATGATCATGTC 58.333 50.000 31.09 29.85 42.41 3.06
3133 3627 1.828832 TTTGCGTTTTACTTGCCACG 58.171 45.000 0.00 0.00 35.71 4.94
3144 3638 0.178767 CTTGCCACGGAGATGGATCA 59.821 55.000 0.00 0.00 43.02 2.92
3158 3652 2.571212 TGGATCACTTGTGCTTTCGTT 58.429 42.857 0.00 0.00 0.00 3.85
3180 3674 6.562518 GTTCTTGCTATAGTCTCCTACGTTT 58.437 40.000 0.00 0.00 0.00 3.60
3215 3709 7.279758 GCTTTAGAGATAACTGCAGAATGAACT 59.720 37.037 23.35 14.30 39.69 3.01
3263 3767 4.304939 GTGTATTACCCGGTTAGAGCATC 58.695 47.826 0.00 0.00 0.00 3.91
3278 3782 0.965439 GCATCTCTAGCTGATCCCGT 59.035 55.000 0.00 0.00 0.00 5.28
3279 3783 2.163509 GCATCTCTAGCTGATCCCGTA 58.836 52.381 0.00 0.00 0.00 4.02
3280 3784 2.558795 GCATCTCTAGCTGATCCCGTAA 59.441 50.000 0.00 0.00 0.00 3.18
3281 3785 3.005897 GCATCTCTAGCTGATCCCGTAAA 59.994 47.826 0.00 0.00 0.00 2.01
3282 3786 4.501571 GCATCTCTAGCTGATCCCGTAAAA 60.502 45.833 0.00 0.00 0.00 1.52
3283 3787 5.601662 CATCTCTAGCTGATCCCGTAAAAA 58.398 41.667 0.00 0.00 0.00 1.94
3297 3801 4.748124 AAAAAGGCCTTGGCCCTT 57.252 50.000 25.53 17.24 44.35 3.95
3298 3802 3.882319 AAAAAGGCCTTGGCCCTTA 57.118 47.368 25.53 0.00 41.70 2.69
3299 3803 2.342406 AAAAAGGCCTTGGCCCTTAT 57.658 45.000 25.53 5.70 41.70 1.73
3300 3804 3.483255 AAAAAGGCCTTGGCCCTTATA 57.517 42.857 25.53 0.00 41.70 0.98
3301 3805 3.483255 AAAAGGCCTTGGCCCTTATAA 57.517 42.857 25.53 0.00 41.70 0.98
3302 3806 3.706389 AAAGGCCTTGGCCCTTATAAT 57.294 42.857 25.53 3.80 41.70 1.28
3303 3807 4.825199 AAAGGCCTTGGCCCTTATAATA 57.175 40.909 25.53 0.00 41.70 0.98
3304 3808 4.825199 AAGGCCTTGGCCCTTATAATAA 57.175 40.909 25.53 0.00 40.79 1.40
3305 3809 4.114015 AGGCCTTGGCCCTTATAATAAC 57.886 45.455 25.53 0.00 0.00 1.89
3306 3810 3.727391 AGGCCTTGGCCCTTATAATAACT 59.273 43.478 25.53 1.01 0.00 2.24
3307 3811 3.826729 GGCCTTGGCCCTTATAATAACTG 59.173 47.826 19.46 0.00 0.00 3.16
3308 3812 3.255888 GCCTTGGCCCTTATAATAACTGC 59.744 47.826 0.00 0.00 0.00 4.40
3309 3813 3.502211 CCTTGGCCCTTATAATAACTGCG 59.498 47.826 0.00 0.00 0.00 5.18
3310 3814 3.134574 TGGCCCTTATAATAACTGCGG 57.865 47.619 0.00 0.00 0.00 5.69
3311 3815 2.440253 TGGCCCTTATAATAACTGCGGT 59.560 45.455 0.00 0.00 0.00 5.68
3312 3816 3.117813 TGGCCCTTATAATAACTGCGGTT 60.118 43.478 16.59 16.59 39.26 4.44
3313 3817 3.887110 GGCCCTTATAATAACTGCGGTTT 59.113 43.478 17.69 1.51 36.92 3.27
3314 3818 4.340097 GGCCCTTATAATAACTGCGGTTTT 59.660 41.667 17.69 12.68 36.92 2.43
3315 3819 5.163488 GGCCCTTATAATAACTGCGGTTTTT 60.163 40.000 17.69 17.11 36.92 1.94
3316 3820 5.746721 GCCCTTATAATAACTGCGGTTTTTG 59.253 40.000 17.69 3.22 36.92 2.44
3317 3821 6.270064 CCCTTATAATAACTGCGGTTTTTGG 58.730 40.000 17.69 11.64 36.92 3.28
3318 3822 6.127563 CCCTTATAATAACTGCGGTTTTTGGT 60.128 38.462 17.69 10.60 36.92 3.67
3319 3823 7.317390 CCTTATAATAACTGCGGTTTTTGGTT 58.683 34.615 17.69 7.35 36.92 3.67
3320 3824 7.815549 CCTTATAATAACTGCGGTTTTTGGTTT 59.184 33.333 17.69 5.13 36.92 3.27
3321 3825 9.198837 CTTATAATAACTGCGGTTTTTGGTTTT 57.801 29.630 17.69 2.69 36.92 2.43
3322 3826 9.543783 TTATAATAACTGCGGTTTTTGGTTTTT 57.456 25.926 17.69 0.00 36.92 1.94
3323 3827 5.726729 ATAACTGCGGTTTTTGGTTTTTG 57.273 34.783 17.69 0.00 36.92 2.44
3324 3828 3.046968 ACTGCGGTTTTTGGTTTTTGT 57.953 38.095 0.00 0.00 0.00 2.83
3325 3829 2.997303 ACTGCGGTTTTTGGTTTTTGTC 59.003 40.909 0.00 0.00 0.00 3.18
3326 3830 2.996621 CTGCGGTTTTTGGTTTTTGTCA 59.003 40.909 0.00 0.00 0.00 3.58
3327 3831 2.996621 TGCGGTTTTTGGTTTTTGTCAG 59.003 40.909 0.00 0.00 0.00 3.51
3328 3832 2.350192 GCGGTTTTTGGTTTTTGTCAGG 59.650 45.455 0.00 0.00 0.00 3.86
3329 3833 3.851098 CGGTTTTTGGTTTTTGTCAGGA 58.149 40.909 0.00 0.00 0.00 3.86
3330 3834 4.246458 CGGTTTTTGGTTTTTGTCAGGAA 58.754 39.130 0.00 0.00 0.00 3.36
3331 3835 4.691216 CGGTTTTTGGTTTTTGTCAGGAAA 59.309 37.500 0.00 0.00 0.00 3.13
3332 3836 5.179555 CGGTTTTTGGTTTTTGTCAGGAAAA 59.820 36.000 0.00 0.00 0.00 2.29
3333 3837 6.293462 CGGTTTTTGGTTTTTGTCAGGAAAAA 60.293 34.615 0.00 0.00 33.42 1.94
3353 3857 3.463048 AAAATGACCCAAGCAGATCCT 57.537 42.857 0.00 0.00 0.00 3.24
3354 3858 2.431954 AATGACCCAAGCAGATCCTG 57.568 50.000 0.00 0.00 34.12 3.86
3366 3870 3.322211 CAGATCCTGCATTTTGCCAAA 57.678 42.857 0.00 0.00 44.23 3.28
3367 3871 2.997986 CAGATCCTGCATTTTGCCAAAC 59.002 45.455 0.00 0.00 44.23 2.93
3368 3872 2.901839 AGATCCTGCATTTTGCCAAACT 59.098 40.909 0.00 0.00 44.23 2.66
3369 3873 2.529780 TCCTGCATTTTGCCAAACTG 57.470 45.000 3.36 3.36 44.23 3.16
3370 3874 1.761784 TCCTGCATTTTGCCAAACTGT 59.238 42.857 8.97 0.00 44.23 3.55
3371 3875 2.961741 TCCTGCATTTTGCCAAACTGTA 59.038 40.909 8.97 4.13 44.23 2.74
3372 3876 3.386078 TCCTGCATTTTGCCAAACTGTAA 59.614 39.130 8.97 0.00 44.23 2.41
3373 3877 4.125703 CCTGCATTTTGCCAAACTGTAAA 58.874 39.130 8.97 0.00 44.23 2.01
3374 3878 4.756135 CCTGCATTTTGCCAAACTGTAAAT 59.244 37.500 8.97 0.00 44.23 1.40
3375 3879 5.106987 CCTGCATTTTGCCAAACTGTAAATC 60.107 40.000 8.97 0.00 44.23 2.17
3376 3880 5.609423 TGCATTTTGCCAAACTGTAAATCT 58.391 33.333 8.97 0.00 44.23 2.40
3377 3881 6.054295 TGCATTTTGCCAAACTGTAAATCTT 58.946 32.000 8.97 0.00 44.23 2.40
3378 3882 6.541641 TGCATTTTGCCAAACTGTAAATCTTT 59.458 30.769 8.97 0.00 44.23 2.52
3379 3883 7.066766 TGCATTTTGCCAAACTGTAAATCTTTT 59.933 29.630 8.97 0.00 44.23 2.27
3380 3884 7.914871 GCATTTTGCCAAACTGTAAATCTTTTT 59.085 29.630 8.97 0.00 37.42 1.94
3381 3885 9.437045 CATTTTGCCAAACTGTAAATCTTTTTC 57.563 29.630 0.00 0.00 0.00 2.29
3382 3886 7.546778 TTTGCCAAACTGTAAATCTTTTTCC 57.453 32.000 0.00 0.00 0.00 3.13
3383 3887 6.227298 TGCCAAACTGTAAATCTTTTTCCA 57.773 33.333 0.00 0.00 0.00 3.53
3384 3888 6.279882 TGCCAAACTGTAAATCTTTTTCCAG 58.720 36.000 0.00 0.00 0.00 3.86
3385 3889 5.177511 GCCAAACTGTAAATCTTTTTCCAGC 59.822 40.000 0.00 0.00 0.00 4.85
3386 3890 6.515832 CCAAACTGTAAATCTTTTTCCAGCT 58.484 36.000 0.00 0.00 0.00 4.24
3387 3891 6.642540 CCAAACTGTAAATCTTTTTCCAGCTC 59.357 38.462 0.00 0.00 0.00 4.09
3388 3892 5.966742 ACTGTAAATCTTTTTCCAGCTCC 57.033 39.130 0.00 0.00 0.00 4.70
3389 3893 4.767409 ACTGTAAATCTTTTTCCAGCTCCC 59.233 41.667 0.00 0.00 0.00 4.30
3390 3894 4.086457 TGTAAATCTTTTTCCAGCTCCCC 58.914 43.478 0.00 0.00 0.00 4.81
3391 3895 2.238084 AATCTTTTTCCAGCTCCCCC 57.762 50.000 0.00 0.00 0.00 5.40
3392 3896 1.387119 ATCTTTTTCCAGCTCCCCCT 58.613 50.000 0.00 0.00 0.00 4.79
3393 3897 2.053747 TCTTTTTCCAGCTCCCCCTA 57.946 50.000 0.00 0.00 0.00 3.53
3394 3898 2.573463 TCTTTTTCCAGCTCCCCCTAT 58.427 47.619 0.00 0.00 0.00 2.57
3395 3899 2.242196 TCTTTTTCCAGCTCCCCCTATG 59.758 50.000 0.00 0.00 0.00 2.23
3396 3900 1.979809 TTTTCCAGCTCCCCCTATGA 58.020 50.000 0.00 0.00 0.00 2.15
3397 3901 1.511613 TTTCCAGCTCCCCCTATGAG 58.488 55.000 0.00 0.00 0.00 2.90
3398 3902 0.400525 TTCCAGCTCCCCCTATGAGG 60.401 60.000 0.00 0.00 34.30 3.86
3399 3903 2.524204 CCAGCTCCCCCTATGAGGC 61.524 68.421 0.00 0.00 32.73 4.70
3400 3904 2.122189 AGCTCCCCCTATGAGGCC 60.122 66.667 0.00 0.00 32.73 5.19
3401 3905 2.448542 GCTCCCCCTATGAGGCCA 60.449 66.667 5.01 0.00 32.73 5.36
3402 3906 2.078665 GCTCCCCCTATGAGGCCAA 61.079 63.158 5.01 0.00 32.73 4.52
3403 3907 1.839894 CTCCCCCTATGAGGCCAAC 59.160 63.158 5.01 0.00 32.73 3.77
3404 3908 0.695803 CTCCCCCTATGAGGCCAACT 60.696 60.000 5.01 0.00 32.73 3.16
3405 3909 0.988145 TCCCCCTATGAGGCCAACTG 60.988 60.000 5.01 0.00 32.73 3.16
3406 3910 1.152881 CCCCTATGAGGCCAACTGC 60.153 63.158 5.01 0.00 40.16 4.40
3420 3924 4.455606 GCCAACTGCCTAATATCTTCAGT 58.544 43.478 0.00 0.00 39.42 3.41
3421 3925 4.884164 GCCAACTGCCTAATATCTTCAGTT 59.116 41.667 0.00 0.00 45.53 3.16
3422 3926 5.358160 GCCAACTGCCTAATATCTTCAGTTT 59.642 40.000 3.50 0.00 43.09 2.66
3423 3927 6.127619 GCCAACTGCCTAATATCTTCAGTTTT 60.128 38.462 3.50 0.00 43.09 2.43
3424 3928 7.577616 GCCAACTGCCTAATATCTTCAGTTTTT 60.578 37.037 3.50 0.00 43.09 1.94
3425 3929 7.756722 CCAACTGCCTAATATCTTCAGTTTTTG 59.243 37.037 3.50 0.00 43.09 2.44
3426 3930 8.514594 CAACTGCCTAATATCTTCAGTTTTTGA 58.485 33.333 3.50 0.00 43.09 2.69
3427 3931 8.273780 ACTGCCTAATATCTTCAGTTTTTGAG 57.726 34.615 0.00 0.00 37.07 3.02
3428 3932 7.337942 ACTGCCTAATATCTTCAGTTTTTGAGG 59.662 37.037 0.00 0.00 37.07 3.86
3429 3933 6.095440 TGCCTAATATCTTCAGTTTTTGAGGC 59.905 38.462 0.00 0.00 37.07 4.70
3430 3934 6.460261 GCCTAATATCTTCAGTTTTTGAGGCC 60.460 42.308 0.00 0.00 37.07 5.19
3431 3935 6.603201 CCTAATATCTTCAGTTTTTGAGGCCA 59.397 38.462 5.01 0.00 37.07 5.36
3432 3936 7.286316 CCTAATATCTTCAGTTTTTGAGGCCAT 59.714 37.037 5.01 0.00 37.07 4.40
3433 3937 7.486407 AATATCTTCAGTTTTTGAGGCCATT 57.514 32.000 5.01 0.00 37.07 3.16
3434 3938 5.813513 ATCTTCAGTTTTTGAGGCCATTT 57.186 34.783 5.01 0.00 37.07 2.32
3435 3939 5.612725 TCTTCAGTTTTTGAGGCCATTTT 57.387 34.783 5.01 0.00 37.07 1.82
3436 3940 5.988287 TCTTCAGTTTTTGAGGCCATTTTT 58.012 33.333 5.01 0.00 37.07 1.94
3437 3941 6.048509 TCTTCAGTTTTTGAGGCCATTTTTC 58.951 36.000 5.01 0.00 37.07 2.29
3438 3942 5.350504 TCAGTTTTTGAGGCCATTTTTCA 57.649 34.783 5.01 0.00 0.00 2.69
3439 3943 5.358922 TCAGTTTTTGAGGCCATTTTTCAG 58.641 37.500 5.01 0.00 0.00 3.02
3440 3944 4.024641 CAGTTTTTGAGGCCATTTTTCAGC 60.025 41.667 5.01 0.00 0.00 4.26
3441 3945 2.437200 TTTGAGGCCATTTTTCAGCG 57.563 45.000 5.01 0.00 0.00 5.18
3442 3946 1.327303 TTGAGGCCATTTTTCAGCGT 58.673 45.000 5.01 0.00 0.00 5.07
3443 3947 0.881118 TGAGGCCATTTTTCAGCGTC 59.119 50.000 5.01 0.00 40.78 5.19
3701 4205 1.579698 CAGGATCAAGCCGAGATGTG 58.420 55.000 0.00 0.00 0.00 3.21
3702 4206 0.467384 AGGATCAAGCCGAGATGTGG 59.533 55.000 0.00 0.00 0.00 4.17
3769 4273 1.762370 AGTGGATGGCATCGTCATACA 59.238 47.619 20.50 9.32 35.99 2.29
3772 4276 1.202639 GGATGGCATCGTCATACACCA 60.203 52.381 20.50 0.00 27.37 4.17
3773 4277 2.550855 GGATGGCATCGTCATACACCAT 60.551 50.000 20.50 0.00 40.52 3.55
3809 4313 3.142838 GCGGCCAATGTGCATCCT 61.143 61.111 2.24 0.00 0.00 3.24
3906 4410 1.893808 GGCCGATGTCGATGCCATT 60.894 57.895 14.91 0.00 43.19 3.16
3969 4473 4.594854 TGTTGCCATGGCGGTGGT 62.595 61.111 30.87 0.00 45.51 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.320050 TGCAACATGTCGCACCTCTA 59.680 50.000 7.54 0.00 31.95 2.43
29 30 1.462283 CACCTCTGACAACAAGCGATG 59.538 52.381 0.00 0.00 0.00 3.84
70 71 5.479716 ACTATTTACAAACATAGGCACGC 57.520 39.130 0.00 0.00 0.00 5.34
87 88 5.581085 CCCGAAAACATCTCGAAGAACTATT 59.419 40.000 0.00 0.00 38.61 1.73
97 98 1.726853 AAGAGCCCGAAAACATCTCG 58.273 50.000 0.00 0.00 36.06 4.04
103 104 2.678336 CCACATCTAAGAGCCCGAAAAC 59.322 50.000 0.00 0.00 0.00 2.43
123 124 8.282455 TCATCGACAGATAGATATAAGTTCCC 57.718 38.462 0.00 0.00 34.85 3.97
131 132 6.210385 ACAAAGCCTCATCGACAGATAGATAT 59.790 38.462 0.00 0.00 34.85 1.63
143 144 0.099968 CATGCCACAAAGCCTCATCG 59.900 55.000 0.00 0.00 0.00 3.84
194 195 2.531483 TTTCCCCTCCTCCCTCTCCG 62.531 65.000 0.00 0.00 0.00 4.63
203 204 3.526430 GGGTAATAACACTTTCCCCTCCT 59.474 47.826 0.00 0.00 0.00 3.69
204 205 3.267551 TGGGTAATAACACTTTCCCCTCC 59.732 47.826 0.00 0.00 34.54 4.30
219 220 4.476628 ACGGTATTTCTTCGTGGGTAAT 57.523 40.909 0.00 0.00 35.70 1.89
220 221 3.959535 ACGGTATTTCTTCGTGGGTAA 57.040 42.857 0.00 0.00 35.70 2.85
222 223 2.301009 AGAACGGTATTTCTTCGTGGGT 59.699 45.455 0.00 0.00 37.20 4.51
232 234 7.739498 AGAATTACACACAAGAACGGTATTT 57.261 32.000 0.00 0.00 0.00 1.40
235 237 6.539464 ACAAAGAATTACACACAAGAACGGTA 59.461 34.615 0.00 0.00 0.00 4.02
242 244 7.479980 TCTCCAAACAAAGAATTACACACAAG 58.520 34.615 0.00 0.00 0.00 3.16
243 245 7.397892 TCTCCAAACAAAGAATTACACACAA 57.602 32.000 0.00 0.00 0.00 3.33
282 288 4.157840 CCCCTCATGACGATGACGATAATA 59.842 45.833 0.00 0.00 42.66 0.98
289 295 2.874701 CAAATCCCCTCATGACGATGAC 59.125 50.000 0.00 0.00 34.71 3.06
300 306 3.690460 CATACATAGCCCAAATCCCCTC 58.310 50.000 0.00 0.00 0.00 4.30
301 307 2.225117 GCATACATAGCCCAAATCCCCT 60.225 50.000 0.00 0.00 0.00 4.79
303 309 2.821969 CTGCATACATAGCCCAAATCCC 59.178 50.000 0.00 0.00 0.00 3.85
312 322 6.428385 AAAAGAGTTCACTGCATACATAGC 57.572 37.500 0.00 0.00 0.00 2.97
338 348 3.096489 ACTAGCTAGTAGACGACGAGG 57.904 52.381 24.97 0.00 34.13 4.63
345 355 5.294050 ACAACACGAACTAGCTAGTAGAC 57.706 43.478 26.29 18.17 34.99 2.59
346 356 5.954296 AACAACACGAACTAGCTAGTAGA 57.046 39.130 26.29 0.00 34.99 2.59
350 360 8.684973 ACTATTTAACAACACGAACTAGCTAG 57.315 34.615 19.44 19.44 0.00 3.42
351 361 8.918658 CAACTATTTAACAACACGAACTAGCTA 58.081 33.333 0.00 0.00 0.00 3.32
353 363 7.790000 TCAACTATTTAACAACACGAACTAGC 58.210 34.615 0.00 0.00 0.00 3.42
406 416 8.429493 TGTTACTAGCTGATTGATGATTTGAG 57.571 34.615 0.00 0.00 0.00 3.02
411 421 8.133627 GCAAAATGTTACTAGCTGATTGATGAT 58.866 33.333 0.00 0.00 0.00 2.45
414 424 7.395190 TGCAAAATGTTACTAGCTGATTGAT 57.605 32.000 0.00 0.00 0.00 2.57
441 451 8.703378 TTTTTGGGATTAAAAATCAAGGCAAT 57.297 26.923 2.36 0.00 35.32 3.56
466 476 5.717178 TCTGAAGTAGCTAGTCAAGTCCATT 59.283 40.000 0.44 0.00 0.00 3.16
477 489 9.604626 CATTTTGTTCTTTTCTGAAGTAGCTAG 57.395 33.333 0.00 0.00 0.00 3.42
546 558 6.624352 TGACTCCATTCTTGTCTCAAAAAG 57.376 37.500 0.00 0.00 0.00 2.27
550 562 5.005740 CCATTGACTCCATTCTTGTCTCAA 58.994 41.667 0.00 0.00 0.00 3.02
551 563 4.286808 TCCATTGACTCCATTCTTGTCTCA 59.713 41.667 0.00 0.00 0.00 3.27
552 564 4.836825 TCCATTGACTCCATTCTTGTCTC 58.163 43.478 0.00 0.00 0.00 3.36
553 565 4.916041 TCCATTGACTCCATTCTTGTCT 57.084 40.909 0.00 0.00 0.00 3.41
554 566 4.397417 CCTTCCATTGACTCCATTCTTGTC 59.603 45.833 0.00 0.00 0.00 3.18
555 567 4.043310 TCCTTCCATTGACTCCATTCTTGT 59.957 41.667 0.00 0.00 0.00 3.16
556 568 4.592942 TCCTTCCATTGACTCCATTCTTG 58.407 43.478 0.00 0.00 0.00 3.02
557 569 4.537688 TCTCCTTCCATTGACTCCATTCTT 59.462 41.667 0.00 0.00 0.00 2.52
571 583 2.301296 CAGCACTTCTTCTCTCCTTCCA 59.699 50.000 0.00 0.00 0.00 3.53
585 597 1.842381 GCCTACCAGGACCAGCACTT 61.842 60.000 0.00 0.00 37.67 3.16
586 598 2.294078 GCCTACCAGGACCAGCACT 61.294 63.158 0.00 0.00 37.67 4.40
587 599 2.269241 GCCTACCAGGACCAGCAC 59.731 66.667 0.00 0.00 37.67 4.40
636 648 1.222661 GGTGGCGGGTAGGGTTAAG 59.777 63.158 0.00 0.00 0.00 1.85
649 661 2.372890 GGGGTAGGTGGTAGGTGGC 61.373 68.421 0.00 0.00 0.00 5.01
651 663 0.252558 ACTGGGGTAGGTGGTAGGTG 60.253 60.000 0.00 0.00 0.00 4.00
655 667 4.901511 CCACTGGGGTAGGTGGTA 57.098 61.111 4.18 0.00 45.52 3.25
722 754 1.152839 CGGAGAGGGGGAGAGAGAC 60.153 68.421 0.00 0.00 0.00 3.36
725 757 4.144727 GGCGGAGAGGGGGAGAGA 62.145 72.222 0.00 0.00 0.00 3.10
814 874 3.856638 GCGATCAATCTAGCAGACCAGAG 60.857 52.174 0.00 0.00 0.00 3.35
837 897 3.317149 AGCGTCATCAATGGAATGAATGG 59.683 43.478 0.00 0.00 32.06 3.16
844 904 2.419159 CCAGAGAGCGTCATCAATGGAA 60.419 50.000 0.00 0.00 31.87 3.53
948 1008 3.797353 CGGTGGTGGATGGAGGGG 61.797 72.222 0.00 0.00 0.00 4.79
976 1037 0.824182 GGCCTCGAAGGAGCTAGCTA 60.824 60.000 19.38 0.00 37.67 3.32
980 1041 2.833582 CCGGCCTCGAAGGAGCTA 60.834 66.667 0.00 0.00 37.67 3.32
1104 1165 2.957006 GTCAGTCGGGATTAGGAGCTTA 59.043 50.000 0.00 0.00 0.00 3.09
1120 1194 3.031736 AGGGTATATTGTGCGAGTCAGT 58.968 45.455 0.00 0.00 0.00 3.41
1121 1195 3.181475 ACAGGGTATATTGTGCGAGTCAG 60.181 47.826 0.00 0.00 0.00 3.51
1124 1198 5.128171 TCTTTACAGGGTATATTGTGCGAGT 59.872 40.000 0.00 0.00 0.00 4.18
1128 1202 7.573843 GCATCATCTTTACAGGGTATATTGTGC 60.574 40.741 0.00 0.00 0.00 4.57
1130 1204 7.749666 AGCATCATCTTTACAGGGTATATTGT 58.250 34.615 0.00 0.00 0.00 2.71
1133 1207 7.619050 CAGAGCATCATCTTTACAGGGTATAT 58.381 38.462 0.00 0.00 37.82 0.86
1136 1210 4.443457 GCAGAGCATCATCTTTACAGGGTA 60.443 45.833 0.00 0.00 37.82 3.69
1138 1212 2.877168 GCAGAGCATCATCTTTACAGGG 59.123 50.000 0.00 0.00 37.82 4.45
1141 1215 4.212143 ACAGCAGAGCATCATCTTTACA 57.788 40.909 0.00 0.00 37.82 2.41
1142 1216 5.814705 AGTAACAGCAGAGCATCATCTTTAC 59.185 40.000 0.00 0.00 37.82 2.01
1143 1217 5.982356 AGTAACAGCAGAGCATCATCTTTA 58.018 37.500 0.00 0.00 37.82 1.85
1145 1219 4.161942 AGAGTAACAGCAGAGCATCATCTT 59.838 41.667 0.00 0.00 37.82 2.40
1147 1221 3.803231 CAGAGTAACAGCAGAGCATCATC 59.197 47.826 0.00 0.00 37.82 2.92
1155 1229 4.733850 CGTGATAACAGAGTAACAGCAGA 58.266 43.478 0.00 0.00 0.00 4.26
1174 1254 4.795970 AGTCAGTAGTTTTTCTTGCGTG 57.204 40.909 0.00 0.00 0.00 5.34
1192 1279 3.849911 TGTGTATGCTCAACTGCTAGTC 58.150 45.455 0.00 0.00 0.00 2.59
1194 1281 5.352293 TCATTTGTGTATGCTCAACTGCTAG 59.648 40.000 9.88 0.00 32.47 3.42
1240 1330 4.783055 TGGTAACAGACTCTAGAGCCTAG 58.217 47.826 19.97 11.02 46.17 3.02
1241 1331 4.857130 TGGTAACAGACTCTAGAGCCTA 57.143 45.455 19.97 0.00 46.17 3.93
1242 1332 3.741245 TGGTAACAGACTCTAGAGCCT 57.259 47.619 19.97 11.58 46.17 4.58
1281 1384 6.601332 TGGAATTGACTTAGAAGTTGGAAGT 58.399 36.000 0.00 0.00 39.88 3.01
1282 1385 7.229506 ACTTGGAATTGACTTAGAAGTTGGAAG 59.770 37.037 0.00 0.00 39.88 3.46
1283 1386 7.013274 CACTTGGAATTGACTTAGAAGTTGGAA 59.987 37.037 0.00 0.00 39.88 3.53
1284 1387 6.486657 CACTTGGAATTGACTTAGAAGTTGGA 59.513 38.462 0.00 0.00 39.88 3.53
1285 1388 6.263168 ACACTTGGAATTGACTTAGAAGTTGG 59.737 38.462 0.00 0.00 39.88 3.77
1286 1389 7.264373 ACACTTGGAATTGACTTAGAAGTTG 57.736 36.000 0.00 0.00 39.88 3.16
1287 1390 7.013369 GGAACACTTGGAATTGACTTAGAAGTT 59.987 37.037 0.00 0.00 39.88 2.66
1300 1403 3.837355 AGCAGAAAGGAACACTTGGAAT 58.163 40.909 0.00 0.00 39.96 3.01
1319 1422 8.500773 CACTAAGAATCTAGTAGCAGTAGTAGC 58.499 40.741 0.00 0.00 33.60 3.58
1341 1667 6.953101 TGCTGTCTGGGATATTTTAACACTA 58.047 36.000 0.00 0.00 0.00 2.74
1366 1695 2.362077 GGCATGTGTCAACTTTTCAGGT 59.638 45.455 0.00 0.00 0.00 4.00
1390 1719 8.421784 CAACTAGCAATATAGTACAGGGAGAAA 58.578 37.037 0.00 0.00 34.90 2.52
1392 1721 6.015350 GCAACTAGCAATATAGTACAGGGAGA 60.015 42.308 0.00 0.00 44.79 3.71
1477 1814 1.496429 CTCCCCCTGGCACATAAGAAT 59.504 52.381 0.00 0.00 38.20 2.40
1483 1821 0.920763 TTGATCTCCCCCTGGCACAT 60.921 55.000 0.00 0.00 38.20 3.21
1502 1840 2.674420 CATGGAGCCCTTCAATGGAAT 58.326 47.619 0.00 0.00 34.12 3.01
1601 1942 6.117975 TCTTGTTTTCGTTCCCTACCTTAT 57.882 37.500 0.00 0.00 0.00 1.73
1605 1946 5.700722 ATTTCTTGTTTTCGTTCCCTACC 57.299 39.130 0.00 0.00 0.00 3.18
1606 1947 7.430992 ACTATTTCTTGTTTTCGTTCCCTAC 57.569 36.000 0.00 0.00 0.00 3.18
1613 1954 5.178809 CCGGAGAACTATTTCTTGTTTTCGT 59.821 40.000 0.00 0.00 42.53 3.85
1663 2004 2.363306 TCAAACATGGGCTCACTTGT 57.637 45.000 0.00 0.00 0.00 3.16
1764 2105 7.120789 CATTTCTTGGCTAAAATGTGAAACC 57.879 36.000 9.93 0.00 37.83 3.27
1816 2285 4.019860 AGCCCATGGTAGTAGATAGCAATG 60.020 45.833 11.73 0.00 44.64 2.82
1820 2289 3.055747 GGAAGCCCATGGTAGTAGATAGC 60.056 52.174 11.73 3.21 0.00 2.97
1829 2298 1.136961 TGGTGTGGAAGCCCATGGTA 61.137 55.000 11.73 0.00 45.68 3.25
1979 2448 7.173218 ACGCAACCATATATAATTGAAGTCCAG 59.827 37.037 10.80 0.00 0.00 3.86
1987 2456 8.015087 CCTGTACAACGCAACCATATATAATTG 58.985 37.037 0.00 4.46 0.00 2.32
1997 2466 1.153147 TGCCTGTACAACGCAACCA 60.153 52.632 13.43 0.00 0.00 3.67
2005 2474 5.782893 AAATAAAAGCACTGCCTGTACAA 57.217 34.783 0.00 0.00 0.00 2.41
2085 2558 4.984161 TGACTGCTACGTTTGTAACTTACC 59.016 41.667 0.00 0.00 0.00 2.85
2091 2564 5.128992 TGATCTGACTGCTACGTTTGTAA 57.871 39.130 0.00 0.00 0.00 2.41
2093 2566 3.660501 TGATCTGACTGCTACGTTTGT 57.339 42.857 0.00 0.00 0.00 2.83
2096 2569 4.389992 CACAAATGATCTGACTGCTACGTT 59.610 41.667 0.00 0.00 0.00 3.99
2210 2684 2.168521 ACGACGATCAATCACCTCCATT 59.831 45.455 0.00 0.00 0.00 3.16
2329 2803 6.904626 AGAACAAAGATATCTTGTAGGCCAT 58.095 36.000 18.61 0.00 36.12 4.40
2407 2881 2.442236 TTGGGAAGGGATGAGATTGC 57.558 50.000 0.00 0.00 0.00 3.56
2434 2908 3.963383 CGGGAAGAAAATGATTACCGG 57.037 47.619 0.00 0.00 46.98 5.28
2478 2952 3.311966 GCAGCATTTTCTTTCCAGTGAC 58.688 45.455 0.00 0.00 0.00 3.67
2481 2955 2.298163 CTGGCAGCATTTTCTTTCCAGT 59.702 45.455 0.00 0.00 35.97 4.00
2484 2958 3.194116 TGATCTGGCAGCATTTTCTTTCC 59.806 43.478 10.34 0.00 0.00 3.13
2496 2970 0.323178 AGCTTGGGTTGATCTGGCAG 60.323 55.000 8.58 8.58 0.00 4.85
2501 2975 3.726557 TGAATCAGCTTGGGTTGATCT 57.273 42.857 0.00 0.00 41.40 2.75
2519 2993 9.729023 CATGTGAAGTTTAGTACAACAATTTGA 57.271 29.630 2.79 0.00 36.48 2.69
2565 3039 9.140286 GGGAAAACTAGCAATATTTCAAACTTC 57.860 33.333 0.00 0.00 34.31 3.01
2584 3058 6.223120 AGTGCAGATGTAAAAATGGGAAAAC 58.777 36.000 0.00 0.00 0.00 2.43
2611 3085 6.035327 GCTGATTCATAATTGTCAAGGTTTGC 59.965 38.462 0.00 0.00 0.00 3.68
2620 3094 7.800380 CGAATTACTGGCTGATTCATAATTGTC 59.200 37.037 6.84 0.00 31.69 3.18
2646 3120 3.455619 AACGAGTTCAAATCGATGCAC 57.544 42.857 15.22 0.00 42.76 4.57
2670 3144 7.606858 AGTCAGTTCATTACAATGACTGATG 57.393 36.000 24.04 14.02 46.55 3.07
2676 3150 5.491070 CCCTCAGTCAGTTCATTACAATGA 58.509 41.667 0.45 0.45 43.28 2.57
2677 3151 4.637534 CCCCTCAGTCAGTTCATTACAATG 59.362 45.833 0.00 0.00 37.75 2.82
2678 3152 4.324563 CCCCCTCAGTCAGTTCATTACAAT 60.325 45.833 0.00 0.00 0.00 2.71
2712 3187 1.669115 CCGGGTTCTGCAGACACAG 60.669 63.158 18.03 12.56 39.12 3.66
3010 3488 1.024271 ACGCACACAGCAAGAACAAT 58.976 45.000 0.00 0.00 46.13 2.71
3040 3528 1.988956 AGCTGAGCCTGAGACTGGG 60.989 63.158 0.00 0.00 0.00 4.45
3041 3529 1.218585 CAGCTGAGCCTGAGACTGG 59.781 63.158 8.42 0.00 34.77 4.00
3042 3530 1.218585 CCAGCTGAGCCTGAGACTG 59.781 63.158 17.39 0.00 34.77 3.51
3043 3531 1.229145 ACCAGCTGAGCCTGAGACT 60.229 57.895 17.39 0.00 34.77 3.24
3044 3532 1.079266 CACCAGCTGAGCCTGAGAC 60.079 63.158 17.39 0.00 34.77 3.36
3045 3533 1.123861 AACACCAGCTGAGCCTGAGA 61.124 55.000 17.39 0.00 34.77 3.27
3055 3543 1.734388 GCCCGTCAAAAACACCAGCT 61.734 55.000 0.00 0.00 0.00 4.24
3080 3568 3.525537 ACTGAGCCAGAAATACGACATG 58.474 45.455 8.91 0.00 35.18 3.21
3084 3572 2.935238 GCCAACTGAGCCAGAAATACGA 60.935 50.000 8.91 0.00 35.18 3.43
3085 3573 1.398390 GCCAACTGAGCCAGAAATACG 59.602 52.381 8.91 0.00 35.18 3.06
3133 3627 2.706339 AGCACAAGTGATCCATCTCC 57.294 50.000 4.04 0.00 0.00 3.71
3144 3638 2.017049 AGCAAGAACGAAAGCACAAGT 58.983 42.857 0.00 0.00 0.00 3.16
3158 3652 6.770746 AAAACGTAGGAGACTATAGCAAGA 57.229 37.500 0.00 0.00 46.56 3.02
3194 3688 6.047511 ACAGTTCATTCTGCAGTTATCTCT 57.952 37.500 14.67 4.65 38.84 3.10
3215 3709 6.430925 CCTAACCATCATCAGTGAGAAAAACA 59.569 38.462 0.00 0.00 37.87 2.83
3252 3756 4.082245 GGATCAGCTAGAGATGCTCTAACC 60.082 50.000 5.75 1.12 41.74 2.85
3286 3790 3.255888 GCAGTTATTATAAGGGCCAAGGC 59.744 47.826 6.18 1.52 41.06 4.35
3287 3791 3.502211 CGCAGTTATTATAAGGGCCAAGG 59.498 47.826 6.18 0.00 0.00 3.61
3288 3792 3.502211 CCGCAGTTATTATAAGGGCCAAG 59.498 47.826 6.18 0.00 0.00 3.61
3289 3793 3.117813 ACCGCAGTTATTATAAGGGCCAA 60.118 43.478 6.18 0.00 0.00 4.52
3290 3794 2.440253 ACCGCAGTTATTATAAGGGCCA 59.560 45.455 6.18 0.00 0.00 5.36
3291 3795 3.136009 ACCGCAGTTATTATAAGGGCC 57.864 47.619 0.00 0.00 0.00 5.80
3292 3796 5.509716 AAAACCGCAGTTATTATAAGGGC 57.490 39.130 0.00 0.00 34.19 5.19
3293 3797 6.127563 ACCAAAAACCGCAGTTATTATAAGGG 60.128 38.462 0.00 0.00 34.19 3.95
3294 3798 6.859017 ACCAAAAACCGCAGTTATTATAAGG 58.141 36.000 0.00 0.00 34.19 2.69
3295 3799 8.751302 AAACCAAAAACCGCAGTTATTATAAG 57.249 30.769 0.00 0.00 34.19 1.73
3296 3800 9.543783 AAAAACCAAAAACCGCAGTTATTATAA 57.456 25.926 0.00 0.00 34.19 0.98
3297 3801 8.979574 CAAAAACCAAAAACCGCAGTTATTATA 58.020 29.630 0.00 0.00 34.19 0.98
3298 3802 7.496263 ACAAAAACCAAAAACCGCAGTTATTAT 59.504 29.630 0.00 0.00 34.19 1.28
3299 3803 6.817140 ACAAAAACCAAAAACCGCAGTTATTA 59.183 30.769 0.00 0.00 34.19 0.98
3300 3804 5.644206 ACAAAAACCAAAAACCGCAGTTATT 59.356 32.000 0.00 0.00 34.19 1.40
3301 3805 5.179533 ACAAAAACCAAAAACCGCAGTTAT 58.820 33.333 0.00 0.00 34.19 1.89
3302 3806 4.566987 ACAAAAACCAAAAACCGCAGTTA 58.433 34.783 0.00 0.00 34.19 2.24
3303 3807 3.403968 ACAAAAACCAAAAACCGCAGTT 58.596 36.364 0.00 0.00 38.03 3.16
3304 3808 2.997303 GACAAAAACCAAAAACCGCAGT 59.003 40.909 0.00 0.00 0.00 4.40
3305 3809 2.996621 TGACAAAAACCAAAAACCGCAG 59.003 40.909 0.00 0.00 0.00 5.18
3306 3810 2.996621 CTGACAAAAACCAAAAACCGCA 59.003 40.909 0.00 0.00 0.00 5.69
3307 3811 2.350192 CCTGACAAAAACCAAAAACCGC 59.650 45.455 0.00 0.00 0.00 5.68
3308 3812 3.851098 TCCTGACAAAAACCAAAAACCG 58.149 40.909 0.00 0.00 0.00 4.44
3309 3813 6.561737 TTTTCCTGACAAAAACCAAAAACC 57.438 33.333 0.00 0.00 0.00 3.27
3332 3836 3.512724 CAGGATCTGCTTGGGTCATTTTT 59.487 43.478 0.00 0.00 0.00 1.94
3333 3837 3.094572 CAGGATCTGCTTGGGTCATTTT 58.905 45.455 0.00 0.00 0.00 1.82
3334 3838 2.731572 CAGGATCTGCTTGGGTCATTT 58.268 47.619 0.00 0.00 0.00 2.32
3335 3839 2.431954 CAGGATCTGCTTGGGTCATT 57.568 50.000 0.00 0.00 0.00 2.57
3354 3858 6.544038 AAGATTTACAGTTTGGCAAAATGC 57.456 33.333 32.79 19.62 39.89 3.56
3355 3859 9.437045 GAAAAAGATTTACAGTTTGGCAAAATG 57.563 29.630 31.67 31.67 41.82 2.32
3356 3860 8.620416 GGAAAAAGATTTACAGTTTGGCAAAAT 58.380 29.630 15.29 11.21 29.12 1.82
3357 3861 7.607991 TGGAAAAAGATTTACAGTTTGGCAAAA 59.392 29.630 15.29 0.00 34.37 2.44
3358 3862 7.106239 TGGAAAAAGATTTACAGTTTGGCAAA 58.894 30.769 8.93 8.93 34.37 3.68
3359 3863 6.644347 TGGAAAAAGATTTACAGTTTGGCAA 58.356 32.000 0.00 0.00 34.37 4.52
3360 3864 6.227298 TGGAAAAAGATTTACAGTTTGGCA 57.773 33.333 0.00 0.00 34.37 4.92
3368 3872 4.086457 GGGGAGCTGGAAAAAGATTTACA 58.914 43.478 0.00 0.00 37.02 2.41
3369 3873 3.447586 GGGGGAGCTGGAAAAAGATTTAC 59.552 47.826 0.00 0.00 0.00 2.01
3370 3874 3.336694 AGGGGGAGCTGGAAAAAGATTTA 59.663 43.478 0.00 0.00 0.00 1.40
3371 3875 2.112511 AGGGGGAGCTGGAAAAAGATTT 59.887 45.455 0.00 0.00 0.00 2.17
3372 3876 1.718801 AGGGGGAGCTGGAAAAAGATT 59.281 47.619 0.00 0.00 0.00 2.40
3373 3877 1.387119 AGGGGGAGCTGGAAAAAGAT 58.613 50.000 0.00 0.00 0.00 2.40
3374 3878 2.053747 TAGGGGGAGCTGGAAAAAGA 57.946 50.000 0.00 0.00 0.00 2.52
3375 3879 2.242196 TCATAGGGGGAGCTGGAAAAAG 59.758 50.000 0.00 0.00 0.00 2.27
3376 3880 2.242196 CTCATAGGGGGAGCTGGAAAAA 59.758 50.000 0.00 0.00 0.00 1.94
3377 3881 1.846439 CTCATAGGGGGAGCTGGAAAA 59.154 52.381 0.00 0.00 0.00 2.29
3378 3882 1.511613 CTCATAGGGGGAGCTGGAAA 58.488 55.000 0.00 0.00 0.00 3.13
3379 3883 0.400525 CCTCATAGGGGGAGCTGGAA 60.401 60.000 0.00 0.00 0.00 3.53
3380 3884 1.237163 CCTCATAGGGGGAGCTGGA 59.763 63.158 0.00 0.00 0.00 3.86
3381 3885 2.524204 GCCTCATAGGGGGAGCTGG 61.524 68.421 0.00 0.00 35.37 4.85
3382 3886 2.524204 GGCCTCATAGGGGGAGCTG 61.524 68.421 0.00 0.00 35.37 4.24
3383 3887 2.122189 GGCCTCATAGGGGGAGCT 60.122 66.667 0.00 0.00 35.37 4.09
3384 3888 2.078665 TTGGCCTCATAGGGGGAGC 61.079 63.158 3.32 0.00 35.37 4.70
3385 3889 0.695803 AGTTGGCCTCATAGGGGGAG 60.696 60.000 3.32 0.00 35.37 4.30
3386 3890 0.988145 CAGTTGGCCTCATAGGGGGA 60.988 60.000 3.32 0.00 35.37 4.81
3387 3891 1.533711 CAGTTGGCCTCATAGGGGG 59.466 63.158 3.32 0.00 35.37 5.40
3388 3892 1.152881 GCAGTTGGCCTCATAGGGG 60.153 63.158 3.32 0.00 35.37 4.79
3389 3893 4.567318 GCAGTTGGCCTCATAGGG 57.433 61.111 3.32 0.00 35.37 3.53
3398 3902 4.455606 ACTGAAGATATTAGGCAGTTGGC 58.544 43.478 0.00 0.00 36.49 4.52
3399 3903 7.396540 AAAACTGAAGATATTAGGCAGTTGG 57.603 36.000 0.00 0.00 45.84 3.77
3400 3904 8.514594 TCAAAAACTGAAGATATTAGGCAGTTG 58.485 33.333 0.00 0.00 45.84 3.16
3402 3906 7.337942 CCTCAAAAACTGAAGATATTAGGCAGT 59.662 37.037 0.00 0.00 41.19 4.40
3403 3907 7.680588 GCCTCAAAAACTGAAGATATTAGGCAG 60.681 40.741 0.00 0.00 34.57 4.85
3404 3908 6.095440 GCCTCAAAAACTGAAGATATTAGGCA 59.905 38.462 0.00 0.00 34.57 4.75
3405 3909 6.460261 GGCCTCAAAAACTGAAGATATTAGGC 60.460 42.308 0.00 0.00 33.99 3.93
3406 3910 6.603201 TGGCCTCAAAAACTGAAGATATTAGG 59.397 38.462 3.32 0.00 32.17 2.69
3407 3911 7.630242 TGGCCTCAAAAACTGAAGATATTAG 57.370 36.000 3.32 0.00 32.17 1.73
3408 3912 8.593945 AATGGCCTCAAAAACTGAAGATATTA 57.406 30.769 3.32 0.00 32.17 0.98
3409 3913 7.486407 AATGGCCTCAAAAACTGAAGATATT 57.514 32.000 3.32 0.00 32.17 1.28
3410 3914 7.486407 AAATGGCCTCAAAAACTGAAGATAT 57.514 32.000 3.32 0.00 32.17 1.63
3411 3915 6.916360 AAATGGCCTCAAAAACTGAAGATA 57.084 33.333 3.32 0.00 32.17 1.98
3412 3916 5.813513 AAATGGCCTCAAAAACTGAAGAT 57.186 34.783 3.32 0.00 32.17 2.40
3413 3917 5.612725 AAAATGGCCTCAAAAACTGAAGA 57.387 34.783 3.32 0.00 32.17 2.87
3414 3918 5.816777 TGAAAAATGGCCTCAAAAACTGAAG 59.183 36.000 3.32 0.00 32.17 3.02
3415 3919 5.738909 TGAAAAATGGCCTCAAAAACTGAA 58.261 33.333 3.32 0.00 32.17 3.02
3416 3920 5.350504 TGAAAAATGGCCTCAAAAACTGA 57.649 34.783 3.32 0.00 0.00 3.41
3417 3921 4.024641 GCTGAAAAATGGCCTCAAAAACTG 60.025 41.667 3.32 0.00 0.00 3.16
3418 3922 4.129380 GCTGAAAAATGGCCTCAAAAACT 58.871 39.130 3.32 0.00 0.00 2.66
3419 3923 3.059665 CGCTGAAAAATGGCCTCAAAAAC 60.060 43.478 3.32 0.00 0.00 2.43
3420 3924 3.129871 CGCTGAAAAATGGCCTCAAAAA 58.870 40.909 3.32 0.00 0.00 1.94
3421 3925 2.102252 ACGCTGAAAAATGGCCTCAAAA 59.898 40.909 3.32 0.00 0.00 2.44
3422 3926 1.686052 ACGCTGAAAAATGGCCTCAAA 59.314 42.857 3.32 0.00 0.00 2.69
3423 3927 1.269448 GACGCTGAAAAATGGCCTCAA 59.731 47.619 3.32 0.00 0.00 3.02
3424 3928 0.881118 GACGCTGAAAAATGGCCTCA 59.119 50.000 3.32 0.00 0.00 3.86
3425 3929 3.702478 GACGCTGAAAAATGGCCTC 57.298 52.632 3.32 0.00 0.00 4.70
3682 4186 1.579698 CACATCTCGGCTTGATCCTG 58.420 55.000 0.00 0.00 0.00 3.86
3683 4187 0.467384 CCACATCTCGGCTTGATCCT 59.533 55.000 0.00 0.00 0.00 3.24
3684 4188 1.162800 GCCACATCTCGGCTTGATCC 61.163 60.000 0.00 0.00 46.56 3.36
3685 4189 2.315246 GCCACATCTCGGCTTGATC 58.685 57.895 0.00 0.00 46.56 2.92
3686 4190 4.547859 GCCACATCTCGGCTTGAT 57.452 55.556 0.00 0.00 46.56 2.57
3738 4242 4.722700 ATCCACTTTGGGCGCGCT 62.723 61.111 32.29 6.78 38.32 5.92
3739 4243 4.481112 CATCCACTTTGGGCGCGC 62.481 66.667 25.94 25.94 38.32 6.86
3740 4244 3.814268 CCATCCACTTTGGGCGCG 61.814 66.667 0.00 0.00 38.32 6.86
3741 4245 4.133796 GCCATCCACTTTGGGCGC 62.134 66.667 0.00 0.00 38.32 6.53
3743 4247 1.818555 GATGCCATCCACTTTGGGC 59.181 57.895 0.00 0.00 46.58 5.36
3744 4248 0.680921 ACGATGCCATCCACTTTGGG 60.681 55.000 0.00 0.00 38.32 4.12
3745 4249 0.734889 GACGATGCCATCCACTTTGG 59.265 55.000 0.00 0.00 39.43 3.28
3746 4250 1.452110 TGACGATGCCATCCACTTTG 58.548 50.000 0.00 0.00 0.00 2.77
3747 4251 2.425143 ATGACGATGCCATCCACTTT 57.575 45.000 0.00 0.00 0.00 2.66
3748 4252 2.170397 TGTATGACGATGCCATCCACTT 59.830 45.455 0.00 0.00 0.00 3.16
3749 4253 1.762370 TGTATGACGATGCCATCCACT 59.238 47.619 0.00 0.00 0.00 4.00
3750 4254 1.867233 GTGTATGACGATGCCATCCAC 59.133 52.381 0.00 0.00 0.00 4.02
3789 4293 3.129913 GATGCACATTGGCCGCCTC 62.130 63.158 11.61 0.00 0.00 4.70
3794 4298 1.389609 CCTCAGGATGCACATTGGCC 61.390 60.000 0.00 0.00 34.76 5.36
3798 4302 2.744166 CGATGACCTCAGGATGCACATT 60.744 50.000 0.00 0.00 34.76 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.