Multiple sequence alignment - TraesCS7A01G016200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G016200 chr7A 100.000 3557 0 0 1 3557 6881702 6885258 0.000000e+00 6569.0
1 TraesCS7A01G016200 chr7A 96.552 58 2 0 499 556 6882142 6882199 2.920000e-16 97.1
2 TraesCS7A01G016200 chr7A 96.552 58 2 0 441 498 6882200 6882257 2.920000e-16 97.1
3 TraesCS7A01G016200 chr4A 91.670 2329 174 15 957 3281 736937219 736934907 0.000000e+00 3208.0
4 TraesCS7A01G016200 chr4A 90.896 2109 170 13 957 3057 736317172 736319266 0.000000e+00 2811.0
5 TraesCS7A01G016200 chr4A 91.028 1906 147 15 1154 3055 735868516 735866631 0.000000e+00 2551.0
6 TraesCS7A01G016200 chr4A 91.875 1637 112 10 957 2590 735066053 735064435 0.000000e+00 2266.0
7 TraesCS7A01G016200 chr4A 87.938 1940 190 23 1649 3557 735948058 735946132 0.000000e+00 2246.0
8 TraesCS7A01G016200 chr4A 89.786 1635 151 12 1649 3281 735158125 735156505 0.000000e+00 2080.0
9 TraesCS7A01G016200 chr4A 90.462 671 56 6 2615 3283 735064439 735063775 0.000000e+00 878.0
10 TraesCS7A01G016200 chr4A 90.741 270 25 0 3288 3557 736934850 736934581 9.390000e-96 361.0
11 TraesCS7A01G016200 chr4A 90.672 268 23 2 3286 3553 735866394 735866129 4.370000e-94 355.0
12 TraesCS7A01G016200 chr4A 90.074 272 27 0 3286 3557 735063722 735063451 1.570000e-93 353.0
13 TraesCS7A01G016200 chr4A 90.875 263 24 0 3295 3557 735156464 735156202 1.570000e-93 353.0
14 TraesCS7A01G016200 chr4A 89.888 267 26 1 3288 3554 736319506 736319771 3.400000e-90 342.0
15 TraesCS7A01G016200 chr4A 93.237 207 7 2 957 1163 735869794 735869595 7.470000e-77 298.0
16 TraesCS7A01G016200 chr4A 89.407 236 21 3 546 777 735870056 735869821 9.660000e-76 294.0
17 TraesCS7A01G016200 chr4A 89.316 234 17 4 546 779 735066411 735066186 1.620000e-73 287.0
18 TraesCS7A01G016200 chr4A 89.610 231 10 6 546 776 736937473 736937257 7.520000e-72 281.0
19 TraesCS7A01G016200 chr7D 92.652 2123 126 16 957 3067 5425460 5427564 0.000000e+00 3029.0
20 TraesCS7A01G016200 chr7D 90.545 275 26 0 3280 3554 5427786 5428060 7.260000e-97 364.0
21 TraesCS7A01G016200 chr7D 89.177 231 13 1 546 776 5425204 5425422 9.730000e-71 278.0
22 TraesCS7A01G016200 chr7D 94.382 178 10 0 3104 3281 5427560 5427737 1.260000e-69 274.0
23 TraesCS7A01G016200 chr7D 90.476 168 15 1 793 959 568976586 568976419 1.660000e-53 220.0
24 TraesCS7A01G016200 chr7D 96.000 50 2 0 498 547 602757369 602757320 8.180000e-12 82.4
25 TraesCS7A01G016200 chr7D 95.918 49 2 0 441 489 602757368 602757320 2.940000e-11 80.5
26 TraesCS7A01G016200 chrUn 83.009 1542 229 17 1032 2555 89192383 89193909 0.000000e+00 1365.0
27 TraesCS7A01G016200 chr2A 93.189 323 20 2 116 437 690351058 690350737 1.160000e-129 473.0
28 TraesCS7A01G016200 chr2A 92.523 321 23 1 116 436 209240986 209241305 3.240000e-125 459.0
29 TraesCS7A01G016200 chr2A 84.084 333 39 11 2948 3277 194119001 194118680 3.450000e-80 309.0
30 TraesCS7A01G016200 chr2A 82.831 332 51 5 2948 3277 502620123 502619796 3.470000e-75 292.0
31 TraesCS7A01G016200 chr2A 100.000 39 0 0 445 483 568848787 568848749 4.930000e-09 73.1
32 TraesCS7A01G016200 chr2A 93.333 45 2 1 498 541 568848793 568848749 8.240000e-07 65.8
33 TraesCS7A01G016200 chr5D 93.125 320 22 0 117 436 554400753 554400434 1.490000e-128 470.0
34 TraesCS7A01G016200 chr5D 95.062 81 2 1 19 99 434934351 434934273 3.730000e-25 126.0
35 TraesCS7A01G016200 chr5A 92.615 325 23 1 117 441 500624006 500624329 1.930000e-127 466.0
36 TraesCS7A01G016200 chr5A 88.095 336 35 5 117 449 621025220 621024887 9.260000e-106 394.0
37 TraesCS7A01G016200 chr5A 92.169 166 12 1 795 959 451879484 451879319 2.140000e-57 233.0
38 TraesCS7A01G016200 chr5A 95.098 102 4 1 19 119 635459300 635459199 3.680000e-35 159.0
39 TraesCS7A01G016200 chr5A 92.593 54 4 0 434 487 635459201 635459148 1.060000e-10 78.7
40 TraesCS7A01G016200 chr6D 93.038 316 22 0 119 434 365722850 365722535 2.500000e-126 462.0
41 TraesCS7A01G016200 chr7B 92.500 320 24 0 117 436 106574889 106574570 3.240000e-125 459.0
42 TraesCS7A01G016200 chr7B 90.116 172 15 2 792 962 161446764 161446594 4.620000e-54 222.0
43 TraesCS7A01G016200 chr6A 92.073 328 22 4 119 445 67124801 67124477 3.240000e-125 459.0
44 TraesCS7A01G016200 chr6A 92.260 323 24 1 112 434 615379506 615379185 1.160000e-124 457.0
45 TraesCS7A01G016200 chr3B 91.743 327 25 2 109 434 259369668 259369343 1.510000e-123 453.0
46 TraesCS7A01G016200 chr3B 93.478 46 2 1 440 485 783275081 783275037 2.290000e-07 67.6
47 TraesCS7A01G016200 chr3B 100.000 36 0 0 508 543 783275072 783275037 2.290000e-07 67.6
48 TraesCS7A01G016200 chr3D 79.941 339 64 4 2941 3276 3828540 3828877 2.740000e-61 246.0
49 TraesCS7A01G016200 chr3D 84.848 231 30 5 3049 3277 197104146 197103919 9.930000e-56 228.0
50 TraesCS7A01G016200 chr3D 90.476 168 15 1 793 959 272098431 272098598 1.660000e-53 220.0
51 TraesCS7A01G016200 chr2D 90.588 170 15 1 794 962 425287099 425286930 1.290000e-54 224.0
52 TraesCS7A01G016200 chr2D 85.572 201 24 5 787 983 498778083 498778282 4.650000e-49 206.0
53 TraesCS7A01G016200 chr2D 85.475 179 26 0 3088 3266 179650777 179650599 1.690000e-43 187.0
54 TraesCS7A01G016200 chr5B 90.909 165 14 1 796 959 575061322 575061158 1.660000e-53 220.0
55 TraesCS7A01G016200 chr2B 89.535 172 17 1 789 959 93694752 93694581 2.150000e-52 217.0
56 TraesCS7A01G016200 chr2B 78.698 338 60 9 2948 3276 277324078 277324412 7.730000e-52 215.0
57 TraesCS7A01G016200 chr2B 89.759 166 15 2 795 959 379712792 379712628 1.000000e-50 211.0
58 TraesCS7A01G016200 chr3A 78.417 139 26 4 2942 3078 704517925 704517789 1.760000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G016200 chr7A 6881702 6885258 3556 False 2254.400000 6569 97.701333 1 3557 3 chr7A.!!$F1 3556
1 TraesCS7A01G016200 chr4A 735946132 735948058 1926 True 2246.000000 2246 87.938000 1649 3557 1 chr4A.!!$R1 1908
2 TraesCS7A01G016200 chr4A 736317172 736319771 2599 False 1576.500000 2811 90.392000 957 3554 2 chr4A.!!$F1 2597
3 TraesCS7A01G016200 chr4A 736934581 736937473 2892 True 1283.333333 3208 90.673667 546 3557 3 chr4A.!!$R5 3011
4 TraesCS7A01G016200 chr4A 735156202 735158125 1923 True 1216.500000 2080 90.330500 1649 3557 2 chr4A.!!$R3 1908
5 TraesCS7A01G016200 chr4A 735063451 735066411 2960 True 946.000000 2266 90.431750 546 3557 4 chr4A.!!$R2 3011
6 TraesCS7A01G016200 chr4A 735866129 735870056 3927 True 874.500000 2551 91.086000 546 3553 4 chr4A.!!$R4 3007
7 TraesCS7A01G016200 chr7D 5425204 5428060 2856 False 986.250000 3029 91.689000 546 3554 4 chr7D.!!$F1 3008
8 TraesCS7A01G016200 chrUn 89192383 89193909 1526 False 1365.000000 1365 83.009000 1032 2555 1 chrUn.!!$F1 1523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.038744 CTCCCAATGCTCCACCTTGT 59.961 55.0 0.0 0.0 0.00 3.16 F
240 241 0.040204 CCCCAGGAAGAACCAATGCT 59.960 55.0 0.0 0.0 42.04 3.79 F
2063 3272 0.102844 CACAAAGCAACCACCACCAG 59.897 55.0 0.0 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2063 3272 0.029834 GATCATCATGTGGTTGCCGC 59.970 55.0 0.00 0.00 34.12 6.53 R
2194 3406 1.884075 TTGTGACCGCTCGGCAGTAT 61.884 55.0 8.41 0.00 39.32 2.12 R
3041 4275 1.097547 CACCGCAGAGGGCCTTAATG 61.098 60.0 7.89 8.81 46.96 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.125512 GGTGCAGCCTGTCTACGG 60.126 66.667 4.03 0.00 0.00 4.02
23 24 2.125512 GTGCAGCCTGTCTACGGG 60.126 66.667 3.43 3.43 45.30 5.28
24 25 3.390521 TGCAGCCTGTCTACGGGG 61.391 66.667 9.97 0.00 42.72 5.73
25 26 4.840005 GCAGCCTGTCTACGGGGC 62.840 72.222 9.97 9.06 45.57 5.80
28 29 4.162690 GCCTGTCTACGGGGCTGG 62.163 72.222 9.97 4.35 42.72 4.85
29 30 2.683933 CCTGTCTACGGGGCTGGT 60.684 66.667 0.00 0.00 38.76 4.00
30 31 2.579201 CTGTCTACGGGGCTGGTG 59.421 66.667 0.00 0.00 0.00 4.17
31 32 3.665675 CTGTCTACGGGGCTGGTGC 62.666 68.421 0.00 0.00 38.76 5.01
32 33 3.391382 GTCTACGGGGCTGGTGCT 61.391 66.667 0.00 0.00 39.59 4.40
33 34 3.390521 TCTACGGGGCTGGTGCTG 61.391 66.667 0.00 0.00 39.59 4.41
34 35 3.390521 CTACGGGGCTGGTGCTGA 61.391 66.667 0.00 0.00 39.59 4.26
35 36 3.665675 CTACGGGGCTGGTGCTGAC 62.666 68.421 0.00 0.00 39.59 3.51
37 38 4.415150 CGGGGCTGGTGCTGACAT 62.415 66.667 0.00 0.00 39.59 3.06
38 39 2.753043 GGGGCTGGTGCTGACATG 60.753 66.667 0.00 0.00 39.59 3.21
39 40 2.753043 GGGCTGGTGCTGACATGG 60.753 66.667 0.00 0.00 39.59 3.66
40 41 3.446570 GGCTGGTGCTGACATGGC 61.447 66.667 0.00 0.00 39.59 4.40
41 42 2.674033 GCTGGTGCTGACATGGCA 60.674 61.111 0.00 0.00 37.36 4.92
42 43 2.270257 GCTGGTGCTGACATGGCAA 61.270 57.895 1.11 0.00 41.54 4.52
43 44 1.808531 GCTGGTGCTGACATGGCAAA 61.809 55.000 1.11 0.00 41.54 3.68
44 45 0.892755 CTGGTGCTGACATGGCAAAT 59.107 50.000 1.11 0.00 41.54 2.32
45 46 0.604073 TGGTGCTGACATGGCAAATG 59.396 50.000 1.11 0.00 41.54 2.32
46 47 0.108520 GGTGCTGACATGGCAAATGG 60.109 55.000 1.11 0.00 41.54 3.16
47 48 0.604578 GTGCTGACATGGCAAATGGT 59.395 50.000 1.11 0.00 41.54 3.55
48 49 1.001181 GTGCTGACATGGCAAATGGTT 59.999 47.619 1.11 0.00 41.54 3.67
49 50 2.230992 GTGCTGACATGGCAAATGGTTA 59.769 45.455 1.11 0.00 41.54 2.85
50 51 3.098377 TGCTGACATGGCAAATGGTTAT 58.902 40.909 1.11 0.00 36.71 1.89
51 52 3.514706 TGCTGACATGGCAAATGGTTATT 59.485 39.130 1.11 0.00 36.71 1.40
52 53 3.866910 GCTGACATGGCAAATGGTTATTG 59.133 43.478 1.11 0.00 0.00 1.90
53 54 4.435425 CTGACATGGCAAATGGTTATTGG 58.565 43.478 1.11 0.00 0.00 3.16
54 55 3.837146 TGACATGGCAAATGGTTATTGGT 59.163 39.130 0.00 0.00 0.00 3.67
55 56 4.285517 TGACATGGCAAATGGTTATTGGTT 59.714 37.500 0.00 0.00 0.00 3.67
56 57 5.221803 TGACATGGCAAATGGTTATTGGTTT 60.222 36.000 0.00 0.00 0.00 3.27
57 58 6.014242 TGACATGGCAAATGGTTATTGGTTTA 60.014 34.615 0.00 0.00 0.00 2.01
58 59 6.773638 ACATGGCAAATGGTTATTGGTTTAA 58.226 32.000 0.00 0.00 0.00 1.52
59 60 6.878389 ACATGGCAAATGGTTATTGGTTTAAG 59.122 34.615 0.00 0.00 0.00 1.85
60 61 5.799213 TGGCAAATGGTTATTGGTTTAAGG 58.201 37.500 0.00 0.00 0.00 2.69
61 62 5.182487 GGCAAATGGTTATTGGTTTAAGGG 58.818 41.667 0.00 0.00 0.00 3.95
62 63 5.182487 GCAAATGGTTATTGGTTTAAGGGG 58.818 41.667 0.00 0.00 0.00 4.79
63 64 5.739959 CAAATGGTTATTGGTTTAAGGGGG 58.260 41.667 0.00 0.00 0.00 5.40
64 65 4.976870 ATGGTTATTGGTTTAAGGGGGA 57.023 40.909 0.00 0.00 0.00 4.81
65 66 4.976870 TGGTTATTGGTTTAAGGGGGAT 57.023 40.909 0.00 0.00 0.00 3.85
66 67 6.615677 ATGGTTATTGGTTTAAGGGGGATA 57.384 37.500 0.00 0.00 0.00 2.59
67 68 5.768752 TGGTTATTGGTTTAAGGGGGATAC 58.231 41.667 0.00 0.00 0.00 2.24
68 69 4.823442 GGTTATTGGTTTAAGGGGGATACG 59.177 45.833 0.00 0.00 37.60 3.06
78 79 3.626924 GGGATACGCGGGCTCCAT 61.627 66.667 20.67 0.00 37.60 3.41
79 80 2.048127 GGATACGCGGGCTCCATC 60.048 66.667 12.47 2.91 0.00 3.51
80 81 2.048127 GATACGCGGGCTCCATCC 60.048 66.667 12.47 0.00 0.00 3.51
81 82 2.842462 ATACGCGGGCTCCATCCA 60.842 61.111 12.47 0.00 0.00 3.41
82 83 3.165160 ATACGCGGGCTCCATCCAC 62.165 63.158 12.47 0.00 0.00 4.02
85 86 4.864334 GCGGGCTCCATCCACCTG 62.864 72.222 0.00 0.00 0.00 4.00
86 87 3.083349 CGGGCTCCATCCACCTGA 61.083 66.667 0.00 0.00 30.92 3.86
87 88 2.669133 CGGGCTCCATCCACCTGAA 61.669 63.158 0.00 0.00 30.92 3.02
88 89 1.691219 GGGCTCCATCCACCTGAAA 59.309 57.895 0.00 0.00 0.00 2.69
89 90 0.259938 GGGCTCCATCCACCTGAAAT 59.740 55.000 0.00 0.00 0.00 2.17
90 91 1.685148 GGCTCCATCCACCTGAAATC 58.315 55.000 0.00 0.00 0.00 2.17
91 92 1.064463 GGCTCCATCCACCTGAAATCA 60.064 52.381 0.00 0.00 0.00 2.57
92 93 2.621407 GGCTCCATCCACCTGAAATCAA 60.621 50.000 0.00 0.00 0.00 2.57
93 94 2.686915 GCTCCATCCACCTGAAATCAAG 59.313 50.000 0.00 0.00 0.00 3.02
94 95 3.285484 CTCCATCCACCTGAAATCAAGG 58.715 50.000 0.00 0.00 0.00 3.61
95 96 2.025037 TCCATCCACCTGAAATCAAGGG 60.025 50.000 0.00 0.00 0.00 3.95
96 97 2.381911 CATCCACCTGAAATCAAGGGG 58.618 52.381 0.00 0.00 0.00 4.79
97 98 3.288099 CCACCTGAAATCAAGGGGG 57.712 57.895 0.00 0.00 40.27 5.40
122 123 3.028850 GGGGGTGAAAAGTATTAAGGCC 58.971 50.000 0.00 0.00 0.00 5.19
123 124 3.028850 GGGGTGAAAAGTATTAAGGCCC 58.971 50.000 0.00 0.00 0.00 5.80
124 125 3.028850 GGGTGAAAAGTATTAAGGCCCC 58.971 50.000 0.00 0.00 0.00 5.80
125 126 3.309629 GGGTGAAAAGTATTAAGGCCCCT 60.310 47.826 0.00 0.00 0.00 4.79
126 127 3.952323 GGTGAAAAGTATTAAGGCCCCTC 59.048 47.826 0.00 0.00 0.00 4.30
127 128 3.952323 GTGAAAAGTATTAAGGCCCCTCC 59.048 47.826 0.00 0.00 0.00 4.30
128 129 3.053170 TGAAAAGTATTAAGGCCCCTCCC 60.053 47.826 0.00 0.00 34.51 4.30
129 130 2.296943 AAGTATTAAGGCCCCTCCCA 57.703 50.000 0.00 0.00 34.51 4.37
130 131 2.296943 AGTATTAAGGCCCCTCCCAA 57.703 50.000 0.00 0.00 34.51 4.12
131 132 2.801935 AGTATTAAGGCCCCTCCCAAT 58.198 47.619 0.00 0.00 34.51 3.16
132 133 2.447047 AGTATTAAGGCCCCTCCCAATG 59.553 50.000 0.00 0.00 34.51 2.82
133 134 0.105504 ATTAAGGCCCCTCCCAATGC 60.106 55.000 0.00 0.00 34.51 3.56
134 135 1.221213 TTAAGGCCCCTCCCAATGCT 61.221 55.000 0.00 0.00 34.51 3.79
135 136 1.645402 TAAGGCCCCTCCCAATGCTC 61.645 60.000 0.00 0.00 34.51 4.26
136 137 4.529731 GGCCCCTCCCAATGCTCC 62.530 72.222 0.00 0.00 0.00 4.70
137 138 3.743017 GCCCCTCCCAATGCTCCA 61.743 66.667 0.00 0.00 0.00 3.86
138 139 2.276740 CCCCTCCCAATGCTCCAC 59.723 66.667 0.00 0.00 0.00 4.02
139 140 2.276740 CCCTCCCAATGCTCCACC 59.723 66.667 0.00 0.00 0.00 4.61
140 141 2.311854 CCCTCCCAATGCTCCACCT 61.312 63.158 0.00 0.00 0.00 4.00
141 142 1.693640 CCTCCCAATGCTCCACCTT 59.306 57.895 0.00 0.00 0.00 3.50
142 143 0.682209 CCTCCCAATGCTCCACCTTG 60.682 60.000 0.00 0.00 0.00 3.61
143 144 0.038744 CTCCCAATGCTCCACCTTGT 59.961 55.000 0.00 0.00 0.00 3.16
144 145 1.281867 CTCCCAATGCTCCACCTTGTA 59.718 52.381 0.00 0.00 0.00 2.41
145 146 1.922447 TCCCAATGCTCCACCTTGTAT 59.078 47.619 0.00 0.00 0.00 2.29
146 147 3.119319 TCCCAATGCTCCACCTTGTATA 58.881 45.455 0.00 0.00 0.00 1.47
147 148 3.721575 TCCCAATGCTCCACCTTGTATAT 59.278 43.478 0.00 0.00 0.00 0.86
148 149 3.822735 CCCAATGCTCCACCTTGTATATG 59.177 47.826 0.00 0.00 0.00 1.78
149 150 4.464008 CCAATGCTCCACCTTGTATATGT 58.536 43.478 0.00 0.00 0.00 2.29
150 151 4.276678 CCAATGCTCCACCTTGTATATGTG 59.723 45.833 0.00 0.00 0.00 3.21
151 152 2.917933 TGCTCCACCTTGTATATGTGC 58.082 47.619 0.00 0.00 0.00 4.57
152 153 2.505407 TGCTCCACCTTGTATATGTGCT 59.495 45.455 0.00 0.00 0.00 4.40
153 154 3.709141 TGCTCCACCTTGTATATGTGCTA 59.291 43.478 0.00 0.00 0.00 3.49
154 155 4.163268 TGCTCCACCTTGTATATGTGCTAA 59.837 41.667 0.00 0.00 0.00 3.09
155 156 4.752101 GCTCCACCTTGTATATGTGCTAAG 59.248 45.833 0.00 0.00 0.00 2.18
156 157 4.703897 TCCACCTTGTATATGTGCTAAGC 58.296 43.478 0.00 0.00 0.00 3.09
157 158 3.815401 CCACCTTGTATATGTGCTAAGCC 59.185 47.826 0.00 0.00 0.00 4.35
158 159 4.444876 CCACCTTGTATATGTGCTAAGCCT 60.445 45.833 0.00 0.00 0.00 4.58
159 160 5.126067 CACCTTGTATATGTGCTAAGCCTT 58.874 41.667 0.00 0.00 0.00 4.35
160 161 5.590259 CACCTTGTATATGTGCTAAGCCTTT 59.410 40.000 0.00 0.00 0.00 3.11
161 162 5.823045 ACCTTGTATATGTGCTAAGCCTTTC 59.177 40.000 0.00 0.00 0.00 2.62
162 163 5.822519 CCTTGTATATGTGCTAAGCCTTTCA 59.177 40.000 0.00 0.00 0.00 2.69
163 164 6.488006 CCTTGTATATGTGCTAAGCCTTTCAT 59.512 38.462 0.00 0.00 0.00 2.57
164 165 6.866010 TGTATATGTGCTAAGCCTTTCATG 57.134 37.500 0.00 0.00 0.00 3.07
165 166 6.356556 TGTATATGTGCTAAGCCTTTCATGT 58.643 36.000 0.00 0.00 0.00 3.21
166 167 7.505258 TGTATATGTGCTAAGCCTTTCATGTA 58.495 34.615 0.00 0.00 0.00 2.29
167 168 7.657354 TGTATATGTGCTAAGCCTTTCATGTAG 59.343 37.037 0.00 0.00 0.00 2.74
168 169 3.609853 TGTGCTAAGCCTTTCATGTAGG 58.390 45.455 10.97 10.97 35.80 3.18
201 202 9.905713 ATCTAATGTGGCAAGTTATTTAAGAGA 57.094 29.630 0.00 0.00 0.00 3.10
202 203 9.733556 TCTAATGTGGCAAGTTATTTAAGAGAA 57.266 29.630 0.00 0.00 0.00 2.87
203 204 9.994432 CTAATGTGGCAAGTTATTTAAGAGAAG 57.006 33.333 0.00 0.00 0.00 2.85
204 205 8.635765 AATGTGGCAAGTTATTTAAGAGAAGA 57.364 30.769 0.00 0.00 0.00 2.87
205 206 7.672983 TGTGGCAAGTTATTTAAGAGAAGAG 57.327 36.000 0.00 0.00 0.00 2.85
206 207 7.450074 TGTGGCAAGTTATTTAAGAGAAGAGA 58.550 34.615 0.00 0.00 0.00 3.10
207 208 7.604164 TGTGGCAAGTTATTTAAGAGAAGAGAG 59.396 37.037 0.00 0.00 0.00 3.20
208 209 7.819900 GTGGCAAGTTATTTAAGAGAAGAGAGA 59.180 37.037 0.00 0.00 0.00 3.10
209 210 8.543774 TGGCAAGTTATTTAAGAGAAGAGAGAT 58.456 33.333 0.00 0.00 0.00 2.75
210 211 8.825745 GGCAAGTTATTTAAGAGAAGAGAGATG 58.174 37.037 0.00 0.00 0.00 2.90
211 212 8.825745 GCAAGTTATTTAAGAGAAGAGAGATGG 58.174 37.037 0.00 0.00 0.00 3.51
218 219 8.830915 TTTAAGAGAAGAGAGATGGATGTAGT 57.169 34.615 0.00 0.00 0.00 2.73
219 220 6.713762 AAGAGAAGAGAGATGGATGTAGTG 57.286 41.667 0.00 0.00 0.00 2.74
220 221 6.012337 AGAGAAGAGAGATGGATGTAGTGA 57.988 41.667 0.00 0.00 0.00 3.41
221 222 5.827797 AGAGAAGAGAGATGGATGTAGTGAC 59.172 44.000 0.00 0.00 0.00 3.67
222 223 4.892934 AGAAGAGAGATGGATGTAGTGACC 59.107 45.833 0.00 0.00 0.00 4.02
223 224 3.571590 AGAGAGATGGATGTAGTGACCC 58.428 50.000 0.00 0.00 0.00 4.46
224 225 2.630580 GAGAGATGGATGTAGTGACCCC 59.369 54.545 0.00 0.00 0.00 4.95
225 226 2.023015 AGAGATGGATGTAGTGACCCCA 60.023 50.000 0.00 0.00 33.48 4.96
226 227 2.366916 GAGATGGATGTAGTGACCCCAG 59.633 54.545 0.00 0.00 32.76 4.45
227 228 1.417890 GATGGATGTAGTGACCCCAGG 59.582 57.143 0.00 0.00 32.76 4.45
228 229 0.415830 TGGATGTAGTGACCCCAGGA 59.584 55.000 0.00 0.00 0.00 3.86
229 230 1.203376 TGGATGTAGTGACCCCAGGAA 60.203 52.381 0.00 0.00 0.00 3.36
230 231 1.486726 GGATGTAGTGACCCCAGGAAG 59.513 57.143 0.00 0.00 0.00 3.46
231 232 2.467880 GATGTAGTGACCCCAGGAAGA 58.532 52.381 0.00 0.00 0.00 2.87
232 233 2.409064 TGTAGTGACCCCAGGAAGAA 57.591 50.000 0.00 0.00 0.00 2.52
233 234 1.975680 TGTAGTGACCCCAGGAAGAAC 59.024 52.381 0.00 0.00 0.00 3.01
234 235 1.278413 GTAGTGACCCCAGGAAGAACC 59.722 57.143 0.00 0.00 39.35 3.62
235 236 0.401395 AGTGACCCCAGGAAGAACCA 60.401 55.000 0.00 0.00 42.04 3.67
236 237 0.476771 GTGACCCCAGGAAGAACCAA 59.523 55.000 0.00 0.00 42.04 3.67
237 238 1.075536 GTGACCCCAGGAAGAACCAAT 59.924 52.381 0.00 0.00 42.04 3.16
238 239 1.075374 TGACCCCAGGAAGAACCAATG 59.925 52.381 0.00 0.00 42.04 2.82
239 240 0.251787 ACCCCAGGAAGAACCAATGC 60.252 55.000 0.00 0.00 42.04 3.56
240 241 0.040204 CCCCAGGAAGAACCAATGCT 59.960 55.000 0.00 0.00 42.04 3.79
241 242 1.284785 CCCCAGGAAGAACCAATGCTA 59.715 52.381 0.00 0.00 42.04 3.49
242 243 2.291540 CCCCAGGAAGAACCAATGCTAA 60.292 50.000 0.00 0.00 42.04 3.09
243 244 3.430453 CCCAGGAAGAACCAATGCTAAA 58.570 45.455 0.00 0.00 42.04 1.85
244 245 3.193479 CCCAGGAAGAACCAATGCTAAAC 59.807 47.826 0.00 0.00 42.04 2.01
245 246 3.119849 CCAGGAAGAACCAATGCTAAACG 60.120 47.826 0.00 0.00 42.04 3.60
246 247 2.488153 AGGAAGAACCAATGCTAAACGC 59.512 45.455 0.00 0.00 42.04 4.84
247 248 2.505866 GAAGAACCAATGCTAAACGCG 58.494 47.619 3.53 3.53 43.27 6.01
248 249 1.519408 AGAACCAATGCTAAACGCGT 58.481 45.000 5.58 5.58 43.27 6.01
249 250 1.196808 AGAACCAATGCTAAACGCGTG 59.803 47.619 14.98 0.24 43.27 5.34
250 251 1.195900 GAACCAATGCTAAACGCGTGA 59.804 47.619 14.98 2.54 43.27 4.35
251 252 1.231221 ACCAATGCTAAACGCGTGAA 58.769 45.000 14.98 2.39 43.27 3.18
252 253 1.069500 ACCAATGCTAAACGCGTGAAC 60.069 47.619 14.98 3.35 43.27 3.18
253 254 1.602191 CAATGCTAAACGCGTGAACC 58.398 50.000 14.98 2.52 43.27 3.62
254 255 1.196808 CAATGCTAAACGCGTGAACCT 59.803 47.619 14.98 0.00 43.27 3.50
255 256 2.373540 ATGCTAAACGCGTGAACCTA 57.626 45.000 14.98 0.00 43.27 3.08
256 257 1.705256 TGCTAAACGCGTGAACCTAG 58.295 50.000 14.98 10.10 43.27 3.02
257 258 0.997196 GCTAAACGCGTGAACCTAGG 59.003 55.000 14.98 7.41 0.00 3.02
258 259 0.997196 CTAAACGCGTGAACCTAGGC 59.003 55.000 14.98 0.00 0.00 3.93
259 260 0.317799 TAAACGCGTGAACCTAGGCA 59.682 50.000 14.98 0.00 0.00 4.75
260 261 0.533308 AAACGCGTGAACCTAGGCAA 60.533 50.000 14.98 0.00 0.00 4.52
261 262 0.533308 AACGCGTGAACCTAGGCAAA 60.533 50.000 14.98 0.00 0.00 3.68
262 263 0.533308 ACGCGTGAACCTAGGCAAAA 60.533 50.000 12.93 0.00 0.00 2.44
263 264 0.110373 CGCGTGAACCTAGGCAAAAC 60.110 55.000 9.30 1.41 0.00 2.43
264 265 0.948678 GCGTGAACCTAGGCAAAACA 59.051 50.000 9.30 0.00 0.00 2.83
265 266 1.539827 GCGTGAACCTAGGCAAAACAT 59.460 47.619 9.30 0.00 0.00 2.71
266 267 2.030274 GCGTGAACCTAGGCAAAACATT 60.030 45.455 9.30 0.00 0.00 2.71
267 268 3.552068 GCGTGAACCTAGGCAAAACATTT 60.552 43.478 9.30 0.00 0.00 2.32
268 269 4.320641 GCGTGAACCTAGGCAAAACATTTA 60.321 41.667 9.30 0.00 0.00 1.40
269 270 5.764131 CGTGAACCTAGGCAAAACATTTAA 58.236 37.500 9.30 0.00 0.00 1.52
270 271 6.210078 CGTGAACCTAGGCAAAACATTTAAA 58.790 36.000 9.30 0.00 0.00 1.52
271 272 6.697892 CGTGAACCTAGGCAAAACATTTAAAA 59.302 34.615 9.30 0.00 0.00 1.52
272 273 7.096230 CGTGAACCTAGGCAAAACATTTAAAAG 60.096 37.037 9.30 0.00 0.00 2.27
273 274 7.923878 GTGAACCTAGGCAAAACATTTAAAAGA 59.076 33.333 9.30 0.00 0.00 2.52
274 275 8.478877 TGAACCTAGGCAAAACATTTAAAAGAA 58.521 29.630 9.30 0.00 0.00 2.52
275 276 8.887036 AACCTAGGCAAAACATTTAAAAGAAG 57.113 30.769 9.30 0.00 0.00 2.85
276 277 8.245195 ACCTAGGCAAAACATTTAAAAGAAGA 57.755 30.769 9.30 0.00 0.00 2.87
277 278 8.700973 ACCTAGGCAAAACATTTAAAAGAAGAA 58.299 29.630 9.30 0.00 0.00 2.52
278 279 9.541143 CCTAGGCAAAACATTTAAAAGAAGAAA 57.459 29.630 0.00 0.00 0.00 2.52
280 281 7.919690 AGGCAAAACATTTAAAAGAAGAAAGC 58.080 30.769 0.00 0.00 0.00 3.51
281 282 7.012327 AGGCAAAACATTTAAAAGAAGAAAGCC 59.988 33.333 0.00 0.00 0.00 4.35
282 283 7.132213 GCAAAACATTTAAAAGAAGAAAGCCC 58.868 34.615 0.00 0.00 0.00 5.19
283 284 7.201688 GCAAAACATTTAAAAGAAGAAAGCCCA 60.202 33.333 0.00 0.00 0.00 5.36
284 285 8.839343 CAAAACATTTAAAAGAAGAAAGCCCAT 58.161 29.630 0.00 0.00 0.00 4.00
285 286 8.607441 AAACATTTAAAAGAAGAAAGCCCATC 57.393 30.769 0.00 0.00 0.00 3.51
286 287 7.301868 ACATTTAAAAGAAGAAAGCCCATCA 57.698 32.000 0.00 0.00 0.00 3.07
287 288 7.734942 ACATTTAAAAGAAGAAAGCCCATCAA 58.265 30.769 0.00 0.00 0.00 2.57
288 289 8.377799 ACATTTAAAAGAAGAAAGCCCATCAAT 58.622 29.630 0.00 0.00 0.00 2.57
289 290 9.874205 CATTTAAAAGAAGAAAGCCCATCAATA 57.126 29.630 0.00 0.00 0.00 1.90
290 291 9.875691 ATTTAAAAGAAGAAAGCCCATCAATAC 57.124 29.630 0.00 0.00 0.00 1.89
291 292 6.916360 AAAAGAAGAAAGCCCATCAATACA 57.084 33.333 0.00 0.00 0.00 2.29
292 293 7.486407 AAAAGAAGAAAGCCCATCAATACAT 57.514 32.000 0.00 0.00 0.00 2.29
293 294 6.461110 AAGAAGAAAGCCCATCAATACATG 57.539 37.500 0.00 0.00 0.00 3.21
294 295 5.759059 AGAAGAAAGCCCATCAATACATGA 58.241 37.500 0.00 0.00 43.67 3.07
295 296 6.189859 AGAAGAAAGCCCATCAATACATGAA 58.810 36.000 0.00 0.00 42.54 2.57
296 297 6.320672 AGAAGAAAGCCCATCAATACATGAAG 59.679 38.462 0.00 0.00 42.54 3.02
297 298 5.759059 AGAAAGCCCATCAATACATGAAGA 58.241 37.500 0.00 0.00 42.54 2.87
298 299 5.826737 AGAAAGCCCATCAATACATGAAGAG 59.173 40.000 0.00 0.00 42.54 2.85
299 300 3.484407 AGCCCATCAATACATGAAGAGC 58.516 45.455 0.00 0.00 42.54 4.09
300 301 3.137913 AGCCCATCAATACATGAAGAGCT 59.862 43.478 0.00 0.00 42.54 4.09
301 302 3.887716 GCCCATCAATACATGAAGAGCTT 59.112 43.478 0.00 0.00 42.54 3.74
302 303 4.340381 GCCCATCAATACATGAAGAGCTTT 59.660 41.667 0.00 0.00 42.54 3.51
303 304 5.532406 GCCCATCAATACATGAAGAGCTTTA 59.468 40.000 0.00 0.00 42.54 1.85
304 305 6.293845 GCCCATCAATACATGAAGAGCTTTAG 60.294 42.308 0.00 0.00 42.54 1.85
305 306 6.769822 CCCATCAATACATGAAGAGCTTTAGT 59.230 38.462 0.00 0.00 42.54 2.24
306 307 7.284034 CCCATCAATACATGAAGAGCTTTAGTT 59.716 37.037 0.00 0.00 42.54 2.24
307 308 8.127327 CCATCAATACATGAAGAGCTTTAGTTG 58.873 37.037 0.00 0.00 42.54 3.16
308 309 7.076842 TCAATACATGAAGAGCTTTAGTTGC 57.923 36.000 0.00 0.00 34.30 4.17
309 310 6.881065 TCAATACATGAAGAGCTTTAGTTGCT 59.119 34.615 0.00 0.00 38.15 3.91
310 311 8.040727 TCAATACATGAAGAGCTTTAGTTGCTA 58.959 33.333 0.00 0.00 36.57 3.49
311 312 8.668353 CAATACATGAAGAGCTTTAGTTGCTAA 58.332 33.333 0.00 0.00 41.30 3.09
312 313 8.792830 ATACATGAAGAGCTTTAGTTGCTAAA 57.207 30.769 0.00 2.01 41.30 1.85
313 314 7.693969 ACATGAAGAGCTTTAGTTGCTAAAT 57.306 32.000 0.00 0.00 41.30 1.40
314 315 7.756558 ACATGAAGAGCTTTAGTTGCTAAATC 58.243 34.615 0.00 0.00 41.30 2.17
315 316 7.391554 ACATGAAGAGCTTTAGTTGCTAAATCA 59.608 33.333 0.00 3.92 41.30 2.57
316 317 7.928307 TGAAGAGCTTTAGTTGCTAAATCAT 57.072 32.000 2.34 0.00 41.30 2.45
317 318 8.340618 TGAAGAGCTTTAGTTGCTAAATCATT 57.659 30.769 2.34 0.00 41.30 2.57
318 319 9.448438 TGAAGAGCTTTAGTTGCTAAATCATTA 57.552 29.630 2.34 0.00 41.30 1.90
354 355 4.162040 AGCAATCATAAGCTAAGCACCT 57.838 40.909 0.00 0.00 39.78 4.00
355 356 5.296151 AGCAATCATAAGCTAAGCACCTA 57.704 39.130 0.00 0.00 39.78 3.08
356 357 5.874093 AGCAATCATAAGCTAAGCACCTAT 58.126 37.500 0.00 0.00 39.78 2.57
357 358 5.704515 AGCAATCATAAGCTAAGCACCTATG 59.295 40.000 0.00 0.00 39.78 2.23
358 359 7.736069 AGCAATCATAAGCTAAGCACCTATGC 61.736 42.308 0.00 0.00 45.52 3.14
376 377 6.777526 CTATGCATTAGGAAGTAGAGTTGC 57.222 41.667 3.54 0.00 0.00 4.17
377 378 4.826274 TGCATTAGGAAGTAGAGTTGCT 57.174 40.909 0.00 0.00 32.20 3.91
378 379 5.932619 TGCATTAGGAAGTAGAGTTGCTA 57.067 39.130 0.00 0.00 29.82 3.49
379 380 6.294361 TGCATTAGGAAGTAGAGTTGCTAA 57.706 37.500 11.90 11.90 42.41 3.09
380 381 6.341316 TGCATTAGGAAGTAGAGTTGCTAAG 58.659 40.000 14.09 8.99 41.77 2.18
381 382 5.235401 GCATTAGGAAGTAGAGTTGCTAAGC 59.765 44.000 14.09 13.14 41.77 3.09
382 383 6.578023 CATTAGGAAGTAGAGTTGCTAAGCT 58.422 40.000 14.09 0.00 41.77 3.74
383 384 7.684670 GCATTAGGAAGTAGAGTTGCTAAGCTA 60.685 40.741 14.09 0.00 41.77 3.32
384 385 7.899648 TTAGGAAGTAGAGTTGCTAAGCTAT 57.100 36.000 6.90 0.00 35.96 2.97
385 386 6.800072 AGGAAGTAGAGTTGCTAAGCTATT 57.200 37.500 0.00 0.00 0.00 1.73
386 387 7.189079 AGGAAGTAGAGTTGCTAAGCTATTT 57.811 36.000 0.00 0.00 0.00 1.40
387 388 8.307582 AGGAAGTAGAGTTGCTAAGCTATTTA 57.692 34.615 0.00 0.00 0.00 1.40
388 389 8.759782 AGGAAGTAGAGTTGCTAAGCTATTTAA 58.240 33.333 0.00 0.00 0.00 1.52
389 390 9.549078 GGAAGTAGAGTTGCTAAGCTATTTAAT 57.451 33.333 0.00 0.00 0.00 1.40
391 392 9.892130 AAGTAGAGTTGCTAAGCTATTTAATGT 57.108 29.630 0.00 0.00 0.00 2.71
392 393 9.319143 AGTAGAGTTGCTAAGCTATTTAATGTG 57.681 33.333 0.00 0.00 0.00 3.21
393 394 7.020914 AGAGTTGCTAAGCTATTTAATGTGC 57.979 36.000 0.00 0.00 0.00 4.57
394 395 6.825721 AGAGTTGCTAAGCTATTTAATGTGCT 59.174 34.615 0.00 2.44 37.37 4.40
395 396 7.337942 AGAGTTGCTAAGCTATTTAATGTGCTT 59.662 33.333 18.26 18.26 45.94 3.91
396 397 8.506168 AGTTGCTAAGCTATTTAATGTGCTTA 57.494 30.769 18.45 18.45 44.08 3.09
403 404 8.664211 AAGCTATTTAATGTGCTTAGTACCTC 57.336 34.615 14.70 0.00 42.94 3.85
404 405 7.792032 AGCTATTTAATGTGCTTAGTACCTCA 58.208 34.615 0.00 0.00 30.96 3.86
405 406 8.432805 AGCTATTTAATGTGCTTAGTACCTCAT 58.567 33.333 0.00 0.00 30.96 2.90
406 407 8.713271 GCTATTTAATGTGCTTAGTACCTCATC 58.287 37.037 0.00 0.00 0.00 2.92
407 408 9.988815 CTATTTAATGTGCTTAGTACCTCATCT 57.011 33.333 0.00 0.00 0.00 2.90
410 411 9.817809 TTTAATGTGCTTAGTACCTCATCTAAG 57.182 33.333 0.00 7.35 43.20 2.18
416 417 6.656632 CTTAGTACCTCATCTAAGCATCCA 57.343 41.667 0.00 0.00 37.42 3.41
417 418 7.238486 CTTAGTACCTCATCTAAGCATCCAT 57.762 40.000 0.00 0.00 37.42 3.41
418 419 5.480642 AGTACCTCATCTAAGCATCCATG 57.519 43.478 0.00 0.00 0.00 3.66
444 445 3.208915 GCAGCAGCCTAAAGAAAAGAC 57.791 47.619 0.00 0.00 33.58 3.01
445 446 2.095008 GCAGCAGCCTAAAGAAAAGACC 60.095 50.000 0.00 0.00 33.58 3.85
446 447 3.416156 CAGCAGCCTAAAGAAAAGACCT 58.584 45.455 0.00 0.00 0.00 3.85
447 448 3.190118 CAGCAGCCTAAAGAAAAGACCTG 59.810 47.826 0.00 0.00 0.00 4.00
448 449 3.149981 GCAGCCTAAAGAAAAGACCTGT 58.850 45.455 0.00 0.00 0.00 4.00
449 450 4.041691 AGCAGCCTAAAGAAAAGACCTGTA 59.958 41.667 0.00 0.00 0.00 2.74
450 451 4.760204 GCAGCCTAAAGAAAAGACCTGTAA 59.240 41.667 0.00 0.00 0.00 2.41
451 452 5.416013 GCAGCCTAAAGAAAAGACCTGTAAT 59.584 40.000 0.00 0.00 0.00 1.89
452 453 6.403746 GCAGCCTAAAGAAAAGACCTGTAATC 60.404 42.308 0.00 0.00 0.00 1.75
453 454 6.655003 CAGCCTAAAGAAAAGACCTGTAATCA 59.345 38.462 0.00 0.00 0.00 2.57
454 455 6.881602 AGCCTAAAGAAAAGACCTGTAATCAG 59.118 38.462 0.00 0.00 41.01 2.90
455 456 6.403746 GCCTAAAGAAAAGACCTGTAATCAGC 60.404 42.308 0.00 0.00 40.09 4.26
456 457 5.966742 AAAGAAAAGACCTGTAATCAGCC 57.033 39.130 0.00 0.00 40.09 4.85
457 458 3.956744 AGAAAAGACCTGTAATCAGCCC 58.043 45.455 0.00 0.00 40.09 5.19
458 459 2.403252 AAAGACCTGTAATCAGCCCG 57.597 50.000 0.00 0.00 40.09 6.13
459 460 1.276622 AAGACCTGTAATCAGCCCGT 58.723 50.000 0.00 0.00 40.09 5.28
460 461 2.154567 AGACCTGTAATCAGCCCGTA 57.845 50.000 0.00 0.00 40.09 4.02
461 462 2.463752 AGACCTGTAATCAGCCCGTAA 58.536 47.619 0.00 0.00 40.09 3.18
462 463 3.039011 AGACCTGTAATCAGCCCGTAAT 58.961 45.455 0.00 0.00 40.09 1.89
463 464 3.131396 GACCTGTAATCAGCCCGTAATG 58.869 50.000 0.00 0.00 40.09 1.90
464 465 2.158813 ACCTGTAATCAGCCCGTAATGG 60.159 50.000 0.00 0.00 40.09 3.16
473 474 2.888534 CCGTAATGGGTCCGTGCG 60.889 66.667 0.00 0.00 0.00 5.34
474 475 2.125832 CGTAATGGGTCCGTGCGT 60.126 61.111 0.00 0.00 0.00 5.24
475 476 1.738830 CGTAATGGGTCCGTGCGTT 60.739 57.895 0.00 0.00 0.00 4.84
476 477 1.293267 CGTAATGGGTCCGTGCGTTT 61.293 55.000 0.00 0.00 0.00 3.60
477 478 1.724429 GTAATGGGTCCGTGCGTTTA 58.276 50.000 0.00 0.00 0.00 2.01
478 479 1.662122 GTAATGGGTCCGTGCGTTTAG 59.338 52.381 0.00 0.00 0.00 1.85
503 504 9.353999 AGCATTTTTGATAAATTAACGAAGACC 57.646 29.630 0.00 0.00 0.00 3.85
504 505 8.592155 GCATTTTTGATAAATTAACGAAGACCC 58.408 33.333 0.00 0.00 0.00 4.46
505 506 9.632807 CATTTTTGATAAATTAACGAAGACCCA 57.367 29.630 0.00 0.00 0.00 4.51
511 512 9.839817 TGATAAATTAACGAAGACCCATAATCA 57.160 29.630 0.00 0.00 0.00 2.57
513 514 6.619801 AATTAACGAAGACCCATAATCAGC 57.380 37.500 0.00 0.00 0.00 4.26
514 515 2.622064 ACGAAGACCCATAATCAGCC 57.378 50.000 0.00 0.00 0.00 4.85
515 516 1.141053 ACGAAGACCCATAATCAGCCC 59.859 52.381 0.00 0.00 0.00 5.19
516 517 1.873903 CGAAGACCCATAATCAGCCCG 60.874 57.143 0.00 0.00 0.00 6.13
517 518 1.141053 GAAGACCCATAATCAGCCCGT 59.859 52.381 0.00 0.00 0.00 5.28
518 519 2.097110 AGACCCATAATCAGCCCGTA 57.903 50.000 0.00 0.00 0.00 4.02
519 520 2.404559 AGACCCATAATCAGCCCGTAA 58.595 47.619 0.00 0.00 0.00 3.18
520 521 2.979678 AGACCCATAATCAGCCCGTAAT 59.020 45.455 0.00 0.00 0.00 1.89
521 522 3.074412 GACCCATAATCAGCCCGTAATG 58.926 50.000 0.00 0.00 0.00 1.90
522 523 2.224769 ACCCATAATCAGCCCGTAATGG 60.225 50.000 0.00 0.00 34.85 3.16
531 532 2.888534 CCGTAATGGGTCCGTGCG 60.889 66.667 0.00 0.00 0.00 5.34
532 533 2.125832 CGTAATGGGTCCGTGCGT 60.126 61.111 0.00 0.00 0.00 5.24
533 534 1.738830 CGTAATGGGTCCGTGCGTT 60.739 57.895 0.00 0.00 0.00 4.84
534 535 1.293267 CGTAATGGGTCCGTGCGTTT 61.293 55.000 0.00 0.00 0.00 3.60
535 536 1.724429 GTAATGGGTCCGTGCGTTTA 58.276 50.000 0.00 0.00 0.00 2.01
536 537 1.662122 GTAATGGGTCCGTGCGTTTAG 59.338 52.381 0.00 0.00 0.00 1.85
582 583 1.143401 GTACGGTTAGGGAGCTGGC 59.857 63.158 0.00 0.00 0.00 4.85
583 584 2.420568 TACGGTTAGGGAGCTGGCG 61.421 63.158 0.00 0.00 0.00 5.69
625 626 2.888414 TCGATATACACGCCCATGAAGA 59.112 45.455 0.00 0.00 0.00 2.87
643 644 4.521639 TGAAGAACGTACACACCAGACTAT 59.478 41.667 0.00 0.00 0.00 2.12
645 646 4.806330 AGAACGTACACACCAGACTATTG 58.194 43.478 0.00 0.00 0.00 1.90
661 662 3.581332 ACTATTGGAAAAGGACAGGACGA 59.419 43.478 0.00 0.00 0.00 4.20
723 728 1.475280 CATGTTCCTTCCGACGACCTA 59.525 52.381 0.00 0.00 0.00 3.08
776 876 5.528690 ACAGGTACTATATTGCATGCACAAG 59.471 40.000 22.58 16.81 36.02 3.16
819 919 9.595823 TCTACTCCCTTCGTTCTTAAATATTTG 57.404 33.333 11.05 0.00 0.00 2.32
820 920 9.379791 CTACTCCCTTCGTTCTTAAATATTTGT 57.620 33.333 11.05 0.00 0.00 2.83
821 921 8.265165 ACTCCCTTCGTTCTTAAATATTTGTC 57.735 34.615 11.05 0.00 0.00 3.18
822 922 8.101419 ACTCCCTTCGTTCTTAAATATTTGTCT 58.899 33.333 11.05 0.00 0.00 3.41
823 923 8.857694 TCCCTTCGTTCTTAAATATTTGTCTT 57.142 30.769 11.05 0.00 0.00 3.01
824 924 9.292195 TCCCTTCGTTCTTAAATATTTGTCTTT 57.708 29.630 11.05 0.00 0.00 2.52
825 925 9.556030 CCCTTCGTTCTTAAATATTTGTCTTTC 57.444 33.333 11.05 0.00 0.00 2.62
868 968 9.863845 TGACTACATACGAAATAAAATGAGTGA 57.136 29.630 0.00 0.00 0.00 3.41
912 1012 9.923143 TGTTTATATACATCTGTATGTGGTAGC 57.077 33.333 12.10 0.00 45.99 3.58
913 1013 9.367444 GTTTATATACATCTGTATGTGGTAGCC 57.633 37.037 12.10 0.00 45.99 3.93
914 1014 4.891992 ATACATCTGTATGTGGTAGCCC 57.108 45.455 2.10 0.00 45.99 5.19
915 1015 2.477245 ACATCTGTATGTGGTAGCCCA 58.523 47.619 0.00 0.00 44.79 5.36
916 1016 3.048600 ACATCTGTATGTGGTAGCCCAT 58.951 45.455 0.00 0.00 44.79 4.00
917 1017 3.459598 ACATCTGTATGTGGTAGCCCATT 59.540 43.478 0.00 0.00 44.79 3.16
918 1018 4.079787 ACATCTGTATGTGGTAGCCCATTT 60.080 41.667 0.00 0.00 44.79 2.32
919 1019 3.884895 TCTGTATGTGGTAGCCCATTTG 58.115 45.455 0.00 0.00 44.35 2.32
920 1020 3.521531 TCTGTATGTGGTAGCCCATTTGA 59.478 43.478 0.00 0.00 44.35 2.69
921 1021 4.018870 TCTGTATGTGGTAGCCCATTTGAA 60.019 41.667 0.00 0.00 44.35 2.69
922 1022 4.667573 TGTATGTGGTAGCCCATTTGAAA 58.332 39.130 0.00 0.00 44.35 2.69
923 1023 5.268387 TGTATGTGGTAGCCCATTTGAAAT 58.732 37.500 0.00 0.00 44.35 2.17
924 1024 5.359576 TGTATGTGGTAGCCCATTTGAAATC 59.640 40.000 0.00 0.00 44.35 2.17
925 1025 4.046286 TGTGGTAGCCCATTTGAAATCT 57.954 40.909 0.00 0.00 44.35 2.40
926 1026 4.016444 TGTGGTAGCCCATTTGAAATCTC 58.984 43.478 0.00 0.00 44.35 2.75
927 1027 4.263905 TGTGGTAGCCCATTTGAAATCTCT 60.264 41.667 0.00 0.00 44.35 3.10
928 1028 5.045213 TGTGGTAGCCCATTTGAAATCTCTA 60.045 40.000 0.00 0.00 44.35 2.43
929 1029 5.885912 GTGGTAGCCCATTTGAAATCTCTAA 59.114 40.000 0.00 0.00 44.35 2.10
930 1030 6.377146 GTGGTAGCCCATTTGAAATCTCTAAA 59.623 38.462 0.00 0.00 44.35 1.85
931 1031 6.951198 TGGTAGCCCATTTGAAATCTCTAAAA 59.049 34.615 0.00 0.00 35.17 1.52
932 1032 7.122650 TGGTAGCCCATTTGAAATCTCTAAAAG 59.877 37.037 0.00 0.00 35.17 2.27
933 1033 7.339466 GGTAGCCCATTTGAAATCTCTAAAAGA 59.661 37.037 0.00 0.00 38.72 2.52
934 1034 7.163001 AGCCCATTTGAAATCTCTAAAAGAC 57.837 36.000 0.00 0.00 36.65 3.01
935 1035 6.721208 AGCCCATTTGAAATCTCTAAAAGACA 59.279 34.615 0.00 0.00 36.65 3.41
936 1036 7.233348 AGCCCATTTGAAATCTCTAAAAGACAA 59.767 33.333 0.00 0.00 36.65 3.18
937 1037 8.037166 GCCCATTTGAAATCTCTAAAAGACAAT 58.963 33.333 0.00 0.00 36.65 2.71
938 1038 9.933723 CCCATTTGAAATCTCTAAAAGACAATT 57.066 29.630 0.00 0.00 36.65 2.32
951 1051 9.947433 TCTAAAAGACAATTATTTAGGAACGGA 57.053 29.630 0.00 0.00 37.29 4.69
953 1053 7.625828 AAAGACAATTATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
954 1054 5.681639 AGACAATTATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
955 1055 5.427481 AGACAATTATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
966 1066 3.632145 GGAACGGAGGGAGTACGTAATTA 59.368 47.826 0.00 0.00 40.31 1.40
977 1077 7.226720 AGGGAGTACGTAATTATCAAGCATTTG 59.773 37.037 0.00 0.00 35.57 2.32
1120 1229 0.951040 GACTGTCCCAACGCTTCCAG 60.951 60.000 0.00 0.00 0.00 3.86
1192 2389 1.279271 GCTTCCATGACTACACCACCT 59.721 52.381 0.00 0.00 0.00 4.00
1197 2394 2.355108 CCATGACTACACCACCTCCTTG 60.355 54.545 0.00 0.00 0.00 3.61
1264 2470 0.318699 CTTCTTCGTCACCTGCGACA 60.319 55.000 0.00 0.00 38.14 4.35
1293 2499 1.874019 CCGCCACATCTTCGTCTCG 60.874 63.158 0.00 0.00 0.00 4.04
1429 2635 1.593787 CTCATGTCGAGCCCACAGT 59.406 57.895 0.00 0.00 34.18 3.55
1513 2722 1.826024 CGCATGGAGAGCCTAACCT 59.174 57.895 0.00 0.00 34.31 3.50
1518 2727 0.895530 TGGAGAGCCTAACCTCGTTG 59.104 55.000 0.00 0.00 36.95 4.10
1575 2784 1.375523 GACGGCCATGTCGGTCTTT 60.376 57.895 2.24 0.00 37.17 2.52
1629 2838 1.681780 CCACCTGTAATTGTGCCGGAT 60.682 52.381 5.05 0.00 0.00 4.18
1660 2869 2.420547 GCTGTCATGGATGTAGGCTTCA 60.421 50.000 0.00 0.00 0.00 3.02
1678 2887 0.752743 CATCCGGAACATGGTGCCAT 60.753 55.000 9.01 0.00 37.08 4.40
1686 2895 2.519771 ACATGGTGCCATCATCTTGT 57.480 45.000 0.00 0.00 37.02 3.16
1702 2911 6.064060 TCATCTTGTTGGAAGTTGATGAAGT 58.936 36.000 0.00 0.00 37.80 3.01
1719 2928 1.734163 AGTGTCTAAAAATCGGCCCG 58.266 50.000 0.00 0.00 0.00 6.13
1754 2963 2.358615 AGCGCAATCGGAACTGCA 60.359 55.556 11.47 0.00 38.52 4.41
1766 2975 1.197721 GGAACTGCACCGATTTGTCAG 59.802 52.381 0.00 0.00 0.00 3.51
1777 2986 4.403752 ACCGATTTGTCAGAGAGATGATGA 59.596 41.667 0.00 0.00 0.00 2.92
1782 2991 7.043258 CGATTTGTCAGAGAGATGATGAAGAAG 60.043 40.741 0.00 0.00 0.00 2.85
1783 2992 6.602410 TTGTCAGAGAGATGATGAAGAAGT 57.398 37.500 0.00 0.00 0.00 3.01
1799 3008 1.536943 AAGTGGAGAGACGGACCAGC 61.537 60.000 0.00 0.00 34.21 4.85
1802 3011 2.680352 GAGAGACGGACCAGCCCA 60.680 66.667 0.00 0.00 0.00 5.36
1803 3012 2.997897 AGAGACGGACCAGCCCAC 60.998 66.667 0.00 0.00 0.00 4.61
1804 3013 3.311110 GAGACGGACCAGCCCACA 61.311 66.667 0.00 0.00 0.00 4.17
1805 3014 2.607750 AGACGGACCAGCCCACAT 60.608 61.111 0.00 0.00 0.00 3.21
1806 3015 2.436646 GACGGACCAGCCCACATG 60.437 66.667 0.00 0.00 0.00 3.21
1807 3016 3.976701 GACGGACCAGCCCACATGG 62.977 68.421 0.00 0.00 43.87 3.66
1816 3025 1.143481 CAGCCCACATGGACATGGATA 59.857 52.381 15.94 0.00 42.91 2.59
1827 3036 5.378230 TGGACATGGATAAAGAGCAAGAT 57.622 39.130 0.00 0.00 0.00 2.40
1832 3041 8.686334 GGACATGGATAAAGAGCAAGATAAAAA 58.314 33.333 0.00 0.00 0.00 1.94
1877 3086 5.186021 CCTACATCCATGACCCAGAGTATAC 59.814 48.000 0.00 0.00 0.00 1.47
1878 3087 3.904339 ACATCCATGACCCAGAGTATACC 59.096 47.826 0.00 0.00 0.00 2.73
1914 3123 1.209128 CTAATGCCTTCCTGTACGCG 58.791 55.000 3.53 3.53 0.00 6.01
1926 3135 0.108992 TGTACGCGACCCTGATCAAC 60.109 55.000 15.93 0.00 0.00 3.18
1998 3207 2.746279 ACAACCTCATCAAACACCCA 57.254 45.000 0.00 0.00 0.00 4.51
2063 3272 0.102844 CACAAAGCAACCACCACCAG 59.897 55.000 0.00 0.00 0.00 4.00
2077 3289 2.672651 CCAGCGGCAACCACATGA 60.673 61.111 0.00 0.00 0.00 3.07
2222 3434 1.034838 AGCGGTCACAAGGTGCAAAA 61.035 50.000 0.00 0.00 32.98 2.44
2491 3703 2.289257 GGGTACGTTGTAGAGCCAAAGT 60.289 50.000 0.00 0.00 39.70 2.66
2577 3789 2.666272 TGACAATACCAACCCAGCAA 57.334 45.000 0.00 0.00 0.00 3.91
2590 3802 5.451798 CCAACCCAGCAATACCATGTAATTC 60.452 44.000 0.00 0.00 0.00 2.17
2672 3888 6.673796 GCATGGGTACACGTAATGTAAAGTTC 60.674 42.308 0.00 0.00 45.51 3.01
2705 3921 4.975147 TCTGGATATCCCCACAATGTAAGT 59.025 41.667 19.34 0.00 34.29 2.24
2768 3995 8.642908 TGTACTAAAAATGATCCATCGTACTG 57.357 34.615 0.00 0.00 0.00 2.74
2781 4009 6.566141 TCCATCGTACTGAAAAACATCGATA 58.434 36.000 0.00 0.00 36.18 2.92
2785 4013 9.147364 CATCGTACTGAAAAACATCGATATTTG 57.853 33.333 1.75 0.00 36.18 2.32
2812 4040 6.148811 ACTTCATTCCACATTACGTTTGTAGG 59.851 38.462 0.00 3.71 0.00 3.18
2823 4051 2.542595 ACGTTTGTAGGAAAGTGCTTCG 59.457 45.455 0.00 0.00 34.56 3.79
2842 4070 5.687285 GCTTCGCCATCTATAAAACCAAATG 59.313 40.000 0.00 0.00 0.00 2.32
2937 4170 8.081633 TCAATTTGGTTGTTGTAGAAGCTATTG 58.918 33.333 0.00 0.00 38.95 1.90
2945 4178 5.696270 TGTTGTAGAAGCTATTGTGTCTGTG 59.304 40.000 0.00 0.00 0.00 3.66
2946 4179 5.722021 TGTAGAAGCTATTGTGTCTGTGA 57.278 39.130 0.00 0.00 0.00 3.58
3023 4257 2.104331 CGGCGCGGTTGAGAGTAT 59.896 61.111 8.83 0.00 0.00 2.12
3041 4275 8.144478 TGAGAGTATGCTCAAGGATTTATACAC 58.856 37.037 13.64 0.00 44.00 2.90
3042 4276 8.023021 AGAGTATGCTCAAGGATTTATACACA 57.977 34.615 13.64 0.00 44.00 3.72
3081 4316 5.163437 GGTGGAAGTAATACCCTACTCTGTG 60.163 48.000 0.00 0.00 30.67 3.66
3136 4372 1.478654 GGAAGTTCAACCTTCAGCCCA 60.479 52.381 5.01 0.00 42.14 5.36
3234 4470 1.663702 GGTGTGTCCGACTGTTCCG 60.664 63.158 0.00 0.00 0.00 4.30
3237 4473 1.663702 GTGTCCGACTGTTCCGTGG 60.664 63.158 0.00 0.00 0.00 4.94
3283 4523 9.295825 CCATATTTAACTGGGTTATATTGCTGA 57.704 33.333 0.00 0.00 0.00 4.26
3335 4648 1.746470 TCATCTTCGTCCGAGTGCTA 58.254 50.000 0.00 0.00 0.00 3.49
3341 4654 2.105006 TCGTCCGAGTGCTAGTACTT 57.895 50.000 15.09 0.00 0.00 2.24
3348 4661 3.688185 CCGAGTGCTAGTACTTGACAGTA 59.312 47.826 25.20 0.00 34.59 2.74
3380 4693 0.672711 GTCCGACTGTTGGGGCTTAC 60.673 60.000 14.08 0.91 0.00 2.34
3450 4763 1.194121 GCCCATTGCCTTTTGGACCT 61.194 55.000 0.00 0.00 44.07 3.85
3497 4810 4.666512 GATGGGCCATTCATATACTTGGT 58.333 43.478 22.20 0.00 0.00 3.67
3554 4867 1.516386 TCGGTCGAGATTTCGCTGC 60.516 57.895 0.00 0.00 46.28 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.125512 CCGTAGACAGGCTGCACC 60.126 66.667 15.89 4.12 39.61 5.01
6 7 2.125512 CCCGTAGACAGGCTGCAC 60.126 66.667 15.89 9.33 0.00 4.57
7 8 3.390521 CCCCGTAGACAGGCTGCA 61.391 66.667 15.89 0.00 0.00 4.41
8 9 4.840005 GCCCCGTAGACAGGCTGC 62.840 72.222 15.89 7.65 43.62 5.25
12 13 2.683933 ACCAGCCCCGTAGACAGG 60.684 66.667 0.00 0.00 0.00 4.00
13 14 2.579201 CACCAGCCCCGTAGACAG 59.421 66.667 0.00 0.00 0.00 3.51
14 15 3.702048 GCACCAGCCCCGTAGACA 61.702 66.667 0.00 0.00 33.58 3.41
15 16 3.391382 AGCACCAGCCCCGTAGAC 61.391 66.667 0.00 0.00 43.56 2.59
16 17 3.390521 CAGCACCAGCCCCGTAGA 61.391 66.667 0.00 0.00 43.56 2.59
17 18 3.390521 TCAGCACCAGCCCCGTAG 61.391 66.667 0.00 0.00 43.56 3.51
18 19 3.702048 GTCAGCACCAGCCCCGTA 61.702 66.667 0.00 0.00 43.56 4.02
20 21 4.415150 ATGTCAGCACCAGCCCCG 62.415 66.667 0.00 0.00 43.56 5.73
21 22 2.753043 CATGTCAGCACCAGCCCC 60.753 66.667 0.00 0.00 43.56 5.80
22 23 2.753043 CCATGTCAGCACCAGCCC 60.753 66.667 0.00 0.00 43.56 5.19
23 24 3.446570 GCCATGTCAGCACCAGCC 61.447 66.667 0.00 0.00 43.56 4.85
24 25 1.808531 TTTGCCATGTCAGCACCAGC 61.809 55.000 0.00 0.00 40.69 4.85
25 26 0.892755 ATTTGCCATGTCAGCACCAG 59.107 50.000 0.00 0.00 40.69 4.00
26 27 0.604073 CATTTGCCATGTCAGCACCA 59.396 50.000 0.00 0.00 40.69 4.17
27 28 0.108520 CCATTTGCCATGTCAGCACC 60.109 55.000 0.00 0.00 40.69 5.01
28 29 0.604578 ACCATTTGCCATGTCAGCAC 59.395 50.000 0.00 0.00 40.69 4.40
29 30 1.340088 AACCATTTGCCATGTCAGCA 58.660 45.000 0.00 0.00 38.81 4.41
30 31 3.806625 ATAACCATTTGCCATGTCAGC 57.193 42.857 0.00 0.00 0.00 4.26
31 32 4.081531 ACCAATAACCATTTGCCATGTCAG 60.082 41.667 0.00 0.00 0.00 3.51
32 33 3.837146 ACCAATAACCATTTGCCATGTCA 59.163 39.130 0.00 0.00 0.00 3.58
33 34 4.470334 ACCAATAACCATTTGCCATGTC 57.530 40.909 0.00 0.00 0.00 3.06
34 35 4.906747 AACCAATAACCATTTGCCATGT 57.093 36.364 0.00 0.00 0.00 3.21
35 36 6.315891 CCTTAAACCAATAACCATTTGCCATG 59.684 38.462 0.00 0.00 0.00 3.66
36 37 6.413892 CCTTAAACCAATAACCATTTGCCAT 58.586 36.000 0.00 0.00 0.00 4.40
37 38 5.280215 CCCTTAAACCAATAACCATTTGCCA 60.280 40.000 0.00 0.00 0.00 4.92
38 39 5.182487 CCCTTAAACCAATAACCATTTGCC 58.818 41.667 0.00 0.00 0.00 4.52
39 40 5.182487 CCCCTTAAACCAATAACCATTTGC 58.818 41.667 0.00 0.00 0.00 3.68
40 41 5.485708 TCCCCCTTAAACCAATAACCATTTG 59.514 40.000 0.00 0.00 0.00 2.32
41 42 5.666738 TCCCCCTTAAACCAATAACCATTT 58.333 37.500 0.00 0.00 0.00 2.32
42 43 5.292550 TCCCCCTTAAACCAATAACCATT 57.707 39.130 0.00 0.00 0.00 3.16
43 44 4.976870 TCCCCCTTAAACCAATAACCAT 57.023 40.909 0.00 0.00 0.00 3.55
44 45 4.976870 ATCCCCCTTAAACCAATAACCA 57.023 40.909 0.00 0.00 0.00 3.67
45 46 4.823442 CGTATCCCCCTTAAACCAATAACC 59.177 45.833 0.00 0.00 0.00 2.85
46 47 4.276678 GCGTATCCCCCTTAAACCAATAAC 59.723 45.833 0.00 0.00 0.00 1.89
47 48 4.463070 GCGTATCCCCCTTAAACCAATAA 58.537 43.478 0.00 0.00 0.00 1.40
48 49 3.494749 CGCGTATCCCCCTTAAACCAATA 60.495 47.826 0.00 0.00 0.00 1.90
49 50 2.747135 CGCGTATCCCCCTTAAACCAAT 60.747 50.000 0.00 0.00 0.00 3.16
50 51 1.407162 CGCGTATCCCCCTTAAACCAA 60.407 52.381 0.00 0.00 0.00 3.67
51 52 0.178533 CGCGTATCCCCCTTAAACCA 59.821 55.000 0.00 0.00 0.00 3.67
52 53 0.533531 CCGCGTATCCCCCTTAAACC 60.534 60.000 4.92 0.00 0.00 3.27
53 54 0.533531 CCCGCGTATCCCCCTTAAAC 60.534 60.000 4.92 0.00 0.00 2.01
54 55 1.831527 CCCGCGTATCCCCCTTAAA 59.168 57.895 4.92 0.00 0.00 1.52
55 56 2.810410 GCCCGCGTATCCCCCTTAA 61.810 63.158 4.92 0.00 0.00 1.85
56 57 3.236233 GCCCGCGTATCCCCCTTA 61.236 66.667 4.92 0.00 0.00 2.69
61 62 3.591254 GATGGAGCCCGCGTATCCC 62.591 68.421 16.12 8.13 31.73 3.85
62 63 2.048127 GATGGAGCCCGCGTATCC 60.048 66.667 4.92 9.98 0.00 2.59
63 64 2.048127 GGATGGAGCCCGCGTATC 60.048 66.667 4.92 0.00 0.00 2.24
64 65 2.842462 TGGATGGAGCCCGCGTAT 60.842 61.111 4.92 0.00 0.00 3.06
65 66 3.845259 GTGGATGGAGCCCGCGTA 61.845 66.667 4.92 0.00 0.00 4.42
68 69 4.864334 CAGGTGGATGGAGCCCGC 62.864 72.222 0.00 0.00 0.00 6.13
69 70 2.196997 TTTCAGGTGGATGGAGCCCG 62.197 60.000 0.00 0.00 0.00 6.13
70 71 0.259938 ATTTCAGGTGGATGGAGCCC 59.740 55.000 0.00 0.00 0.00 5.19
71 72 1.064463 TGATTTCAGGTGGATGGAGCC 60.064 52.381 0.00 0.00 0.00 4.70
72 73 2.425143 TGATTTCAGGTGGATGGAGC 57.575 50.000 0.00 0.00 0.00 4.70
73 74 3.285484 CCTTGATTTCAGGTGGATGGAG 58.715 50.000 0.00 0.00 0.00 3.86
74 75 2.025037 CCCTTGATTTCAGGTGGATGGA 60.025 50.000 0.00 0.00 0.00 3.41
75 76 2.381911 CCCTTGATTTCAGGTGGATGG 58.618 52.381 0.00 0.00 0.00 3.51
76 77 2.381911 CCCCTTGATTTCAGGTGGATG 58.618 52.381 0.00 0.00 0.00 3.51
77 78 1.288932 CCCCCTTGATTTCAGGTGGAT 59.711 52.381 0.00 0.00 0.00 3.41
78 79 0.704076 CCCCCTTGATTTCAGGTGGA 59.296 55.000 0.00 0.00 0.00 4.02
79 80 3.288099 CCCCCTTGATTTCAGGTGG 57.712 57.895 0.00 0.00 0.00 4.61
101 102 3.028850 GGCCTTAATACTTTTCACCCCC 58.971 50.000 0.00 0.00 0.00 5.40
102 103 3.028850 GGGCCTTAATACTTTTCACCCC 58.971 50.000 0.84 0.00 0.00 4.95
103 104 3.028850 GGGGCCTTAATACTTTTCACCC 58.971 50.000 0.84 0.00 0.00 4.61
104 105 3.952323 GAGGGGCCTTAATACTTTTCACC 59.048 47.826 0.84 0.00 0.00 4.02
105 106 3.952323 GGAGGGGCCTTAATACTTTTCAC 59.048 47.826 0.84 0.00 0.00 3.18
106 107 3.053170 GGGAGGGGCCTTAATACTTTTCA 60.053 47.826 0.84 0.00 36.66 2.69
107 108 3.053170 TGGGAGGGGCCTTAATACTTTTC 60.053 47.826 0.84 0.00 36.66 2.29
108 109 2.930405 TGGGAGGGGCCTTAATACTTTT 59.070 45.455 0.84 0.00 36.66 2.27
109 110 2.580232 TGGGAGGGGCCTTAATACTTT 58.420 47.619 0.84 0.00 36.66 2.66
110 111 2.296943 TGGGAGGGGCCTTAATACTT 57.703 50.000 0.84 0.00 36.66 2.24
111 112 2.296943 TTGGGAGGGGCCTTAATACT 57.703 50.000 0.84 0.00 36.66 2.12
112 113 2.876581 CATTGGGAGGGGCCTTAATAC 58.123 52.381 0.84 0.00 36.66 1.89
113 114 1.146982 GCATTGGGAGGGGCCTTAATA 59.853 52.381 0.84 0.00 36.66 0.98
114 115 0.105504 GCATTGGGAGGGGCCTTAAT 60.106 55.000 0.84 0.00 36.66 1.40
115 116 1.221213 AGCATTGGGAGGGGCCTTAA 61.221 55.000 0.84 0.00 36.66 1.85
116 117 1.622442 AGCATTGGGAGGGGCCTTA 60.622 57.895 0.84 0.00 36.66 2.69
117 118 2.948924 AGCATTGGGAGGGGCCTT 60.949 61.111 0.84 0.00 36.66 4.35
118 119 3.424105 GAGCATTGGGAGGGGCCT 61.424 66.667 0.84 0.00 36.66 5.19
119 120 4.529731 GGAGCATTGGGAGGGGCC 62.530 72.222 0.00 0.00 0.00 5.80
120 121 3.743017 TGGAGCATTGGGAGGGGC 61.743 66.667 0.00 0.00 0.00 5.80
121 122 2.276740 GTGGAGCATTGGGAGGGG 59.723 66.667 0.00 0.00 0.00 4.79
122 123 1.867595 AAGGTGGAGCATTGGGAGGG 61.868 60.000 0.00 0.00 0.00 4.30
123 124 0.682209 CAAGGTGGAGCATTGGGAGG 60.682 60.000 0.00 0.00 35.45 4.30
124 125 0.038744 ACAAGGTGGAGCATTGGGAG 59.961 55.000 0.00 0.00 42.57 4.30
125 126 1.367346 TACAAGGTGGAGCATTGGGA 58.633 50.000 0.00 0.00 42.57 4.37
126 127 2.442236 ATACAAGGTGGAGCATTGGG 57.558 50.000 0.00 0.00 42.57 4.12
127 128 4.276678 CACATATACAAGGTGGAGCATTGG 59.723 45.833 0.00 0.00 42.57 3.16
128 129 4.261322 GCACATATACAAGGTGGAGCATTG 60.261 45.833 0.00 0.00 43.74 2.82
129 130 3.885297 GCACATATACAAGGTGGAGCATT 59.115 43.478 0.00 0.00 33.25 3.56
130 131 3.137176 AGCACATATACAAGGTGGAGCAT 59.863 43.478 0.00 0.00 33.25 3.79
131 132 2.505407 AGCACATATACAAGGTGGAGCA 59.495 45.455 0.00 0.00 33.25 4.26
132 133 3.199880 AGCACATATACAAGGTGGAGC 57.800 47.619 0.00 0.00 33.25 4.70
133 134 4.752101 GCTTAGCACATATACAAGGTGGAG 59.248 45.833 0.00 0.00 33.25 3.86
134 135 4.444306 GGCTTAGCACATATACAAGGTGGA 60.444 45.833 6.53 0.00 33.25 4.02
135 136 3.815401 GGCTTAGCACATATACAAGGTGG 59.185 47.826 6.53 0.00 33.25 4.61
136 137 4.708177 AGGCTTAGCACATATACAAGGTG 58.292 43.478 6.53 0.00 35.68 4.00
137 138 5.373812 AAGGCTTAGCACATATACAAGGT 57.626 39.130 6.53 0.00 0.00 3.50
138 139 5.822519 TGAAAGGCTTAGCACATATACAAGG 59.177 40.000 6.53 0.00 0.00 3.61
139 140 6.925610 TGAAAGGCTTAGCACATATACAAG 57.074 37.500 6.53 0.00 0.00 3.16
140 141 6.828273 ACATGAAAGGCTTAGCACATATACAA 59.172 34.615 6.53 0.00 0.00 2.41
141 142 6.356556 ACATGAAAGGCTTAGCACATATACA 58.643 36.000 6.53 0.00 0.00 2.29
142 143 6.867662 ACATGAAAGGCTTAGCACATATAC 57.132 37.500 6.53 0.00 0.00 1.47
143 144 7.161404 CCTACATGAAAGGCTTAGCACATATA 58.839 38.462 6.53 0.00 0.00 0.86
144 145 6.000219 CCTACATGAAAGGCTTAGCACATAT 59.000 40.000 6.53 0.00 0.00 1.78
145 146 5.368145 CCTACATGAAAGGCTTAGCACATA 58.632 41.667 6.53 0.00 0.00 2.29
146 147 4.202441 CCTACATGAAAGGCTTAGCACAT 58.798 43.478 6.53 3.31 0.00 3.21
147 148 3.609853 CCTACATGAAAGGCTTAGCACA 58.390 45.455 6.53 0.89 0.00 4.57
175 176 9.905713 TCTCTTAAATAACTTGCCACATTAGAT 57.094 29.630 0.00 0.00 0.00 1.98
176 177 9.733556 TTCTCTTAAATAACTTGCCACATTAGA 57.266 29.630 0.00 0.00 0.00 2.10
177 178 9.994432 CTTCTCTTAAATAACTTGCCACATTAG 57.006 33.333 0.00 0.00 0.00 1.73
178 179 9.733556 TCTTCTCTTAAATAACTTGCCACATTA 57.266 29.630 0.00 0.00 0.00 1.90
179 180 8.635765 TCTTCTCTTAAATAACTTGCCACATT 57.364 30.769 0.00 0.00 0.00 2.71
180 181 8.103305 TCTCTTCTCTTAAATAACTTGCCACAT 58.897 33.333 0.00 0.00 0.00 3.21
181 182 7.450074 TCTCTTCTCTTAAATAACTTGCCACA 58.550 34.615 0.00 0.00 0.00 4.17
182 183 7.819900 TCTCTCTTCTCTTAAATAACTTGCCAC 59.180 37.037 0.00 0.00 0.00 5.01
183 184 7.907389 TCTCTCTTCTCTTAAATAACTTGCCA 58.093 34.615 0.00 0.00 0.00 4.92
184 185 8.825745 CATCTCTCTTCTCTTAAATAACTTGCC 58.174 37.037 0.00 0.00 0.00 4.52
185 186 8.825745 CCATCTCTCTTCTCTTAAATAACTTGC 58.174 37.037 0.00 0.00 0.00 4.01
192 193 9.432982 ACTACATCCATCTCTCTTCTCTTAAAT 57.567 33.333 0.00 0.00 0.00 1.40
193 194 8.690884 CACTACATCCATCTCTCTTCTCTTAAA 58.309 37.037 0.00 0.00 0.00 1.52
194 195 8.055790 TCACTACATCCATCTCTCTTCTCTTAA 58.944 37.037 0.00 0.00 0.00 1.85
195 196 7.500892 GTCACTACATCCATCTCTCTTCTCTTA 59.499 40.741 0.00 0.00 0.00 2.10
196 197 6.321181 GTCACTACATCCATCTCTCTTCTCTT 59.679 42.308 0.00 0.00 0.00 2.85
197 198 5.827797 GTCACTACATCCATCTCTCTTCTCT 59.172 44.000 0.00 0.00 0.00 3.10
198 199 5.009610 GGTCACTACATCCATCTCTCTTCTC 59.990 48.000 0.00 0.00 0.00 2.87
199 200 4.892934 GGTCACTACATCCATCTCTCTTCT 59.107 45.833 0.00 0.00 0.00 2.85
200 201 4.038642 GGGTCACTACATCCATCTCTCTTC 59.961 50.000 0.00 0.00 0.00 2.87
201 202 3.964031 GGGTCACTACATCCATCTCTCTT 59.036 47.826 0.00 0.00 0.00 2.85
202 203 3.571590 GGGTCACTACATCCATCTCTCT 58.428 50.000 0.00 0.00 0.00 3.10
203 204 2.630580 GGGGTCACTACATCCATCTCTC 59.369 54.545 0.00 0.00 0.00 3.20
204 205 2.023015 TGGGGTCACTACATCCATCTCT 60.023 50.000 0.00 0.00 0.00 3.10
205 206 2.366916 CTGGGGTCACTACATCCATCTC 59.633 54.545 0.00 0.00 32.40 2.75
206 207 2.402564 CTGGGGTCACTACATCCATCT 58.597 52.381 0.00 0.00 32.40 2.90
207 208 1.417890 CCTGGGGTCACTACATCCATC 59.582 57.143 0.00 0.00 32.40 3.51
208 209 1.009552 TCCTGGGGTCACTACATCCAT 59.990 52.381 0.00 0.00 32.40 3.41
209 210 0.415830 TCCTGGGGTCACTACATCCA 59.584 55.000 0.00 0.00 0.00 3.41
210 211 1.486726 CTTCCTGGGGTCACTACATCC 59.513 57.143 0.00 0.00 0.00 3.51
211 212 2.467880 TCTTCCTGGGGTCACTACATC 58.532 52.381 0.00 0.00 0.00 3.06
212 213 2.572104 GTTCTTCCTGGGGTCACTACAT 59.428 50.000 0.00 0.00 0.00 2.29
213 214 1.975680 GTTCTTCCTGGGGTCACTACA 59.024 52.381 0.00 0.00 0.00 2.74
214 215 1.278413 GGTTCTTCCTGGGGTCACTAC 59.722 57.143 0.00 0.00 0.00 2.73
215 216 1.132657 TGGTTCTTCCTGGGGTCACTA 60.133 52.381 0.00 0.00 37.07 2.74
216 217 0.401395 TGGTTCTTCCTGGGGTCACT 60.401 55.000 0.00 0.00 37.07 3.41
217 218 0.476771 TTGGTTCTTCCTGGGGTCAC 59.523 55.000 0.00 0.00 37.07 3.67
218 219 1.075374 CATTGGTTCTTCCTGGGGTCA 59.925 52.381 0.00 0.00 37.07 4.02
219 220 1.839424 CATTGGTTCTTCCTGGGGTC 58.161 55.000 0.00 0.00 37.07 4.46
220 221 0.251787 GCATTGGTTCTTCCTGGGGT 60.252 55.000 0.00 0.00 37.07 4.95
221 222 0.040204 AGCATTGGTTCTTCCTGGGG 59.960 55.000 0.00 0.00 37.07 4.96
222 223 2.806945 TAGCATTGGTTCTTCCTGGG 57.193 50.000 0.00 0.00 37.07 4.45
223 224 3.119849 CGTTTAGCATTGGTTCTTCCTGG 60.120 47.826 0.00 0.00 37.07 4.45
224 225 4.083581 CGTTTAGCATTGGTTCTTCCTG 57.916 45.455 0.00 0.00 37.07 3.86
238 239 0.997196 CCTAGGTTCACGCGTTTAGC 59.003 55.000 10.22 10.47 43.95 3.09
239 240 0.997196 GCCTAGGTTCACGCGTTTAG 59.003 55.000 10.22 6.76 0.00 1.85
240 241 0.317799 TGCCTAGGTTCACGCGTTTA 59.682 50.000 10.22 0.00 0.00 2.01
241 242 0.533308 TTGCCTAGGTTCACGCGTTT 60.533 50.000 10.22 0.00 0.00 3.60
242 243 0.533308 TTTGCCTAGGTTCACGCGTT 60.533 50.000 10.22 0.00 0.00 4.84
243 244 0.533308 TTTTGCCTAGGTTCACGCGT 60.533 50.000 5.58 5.58 0.00 6.01
244 245 0.110373 GTTTTGCCTAGGTTCACGCG 60.110 55.000 11.31 3.53 0.00 6.01
245 246 0.948678 TGTTTTGCCTAGGTTCACGC 59.051 50.000 11.31 0.00 0.00 5.34
246 247 3.915437 AATGTTTTGCCTAGGTTCACG 57.085 42.857 11.31 0.00 0.00 4.35
247 248 7.923878 TCTTTTAAATGTTTTGCCTAGGTTCAC 59.076 33.333 11.31 3.25 0.00 3.18
248 249 8.012957 TCTTTTAAATGTTTTGCCTAGGTTCA 57.987 30.769 11.31 0.00 0.00 3.18
249 250 8.880878 TTCTTTTAAATGTTTTGCCTAGGTTC 57.119 30.769 11.31 0.00 0.00 3.62
250 251 8.700973 TCTTCTTTTAAATGTTTTGCCTAGGTT 58.299 29.630 11.31 0.00 0.00 3.50
251 252 8.245195 TCTTCTTTTAAATGTTTTGCCTAGGT 57.755 30.769 11.31 0.00 0.00 3.08
252 253 9.541143 TTTCTTCTTTTAAATGTTTTGCCTAGG 57.459 29.630 3.67 3.67 0.00 3.02
254 255 9.040939 GCTTTCTTCTTTTAAATGTTTTGCCTA 57.959 29.630 1.46 0.00 0.00 3.93
255 256 7.012327 GGCTTTCTTCTTTTAAATGTTTTGCCT 59.988 33.333 0.00 0.00 0.00 4.75
256 257 7.132213 GGCTTTCTTCTTTTAAATGTTTTGCC 58.868 34.615 1.46 0.00 0.00 4.52
257 258 7.132213 GGGCTTTCTTCTTTTAAATGTTTTGC 58.868 34.615 1.46 0.00 0.00 3.68
258 259 8.207521 TGGGCTTTCTTCTTTTAAATGTTTTG 57.792 30.769 1.46 0.00 0.00 2.44
259 260 8.978874 ATGGGCTTTCTTCTTTTAAATGTTTT 57.021 26.923 1.46 0.00 0.00 2.43
260 261 8.210265 TGATGGGCTTTCTTCTTTTAAATGTTT 58.790 29.630 1.46 0.00 0.00 2.83
261 262 7.734942 TGATGGGCTTTCTTCTTTTAAATGTT 58.265 30.769 1.46 0.00 0.00 2.71
262 263 7.301868 TGATGGGCTTTCTTCTTTTAAATGT 57.698 32.000 1.46 0.00 0.00 2.71
263 264 8.782339 ATTGATGGGCTTTCTTCTTTTAAATG 57.218 30.769 0.00 0.00 0.00 2.32
264 265 9.875691 GTATTGATGGGCTTTCTTCTTTTAAAT 57.124 29.630 0.00 0.00 0.00 1.40
265 266 8.865090 TGTATTGATGGGCTTTCTTCTTTTAAA 58.135 29.630 0.00 0.00 0.00 1.52
266 267 8.415950 TGTATTGATGGGCTTTCTTCTTTTAA 57.584 30.769 0.00 0.00 0.00 1.52
267 268 8.469200 CATGTATTGATGGGCTTTCTTCTTTTA 58.531 33.333 0.00 0.00 0.00 1.52
268 269 6.916360 TGTATTGATGGGCTTTCTTCTTTT 57.084 33.333 0.00 0.00 0.00 2.27
269 270 6.664816 TCATGTATTGATGGGCTTTCTTCTTT 59.335 34.615 0.00 0.00 0.00 2.52
270 271 6.189859 TCATGTATTGATGGGCTTTCTTCTT 58.810 36.000 0.00 0.00 0.00 2.52
271 272 5.759059 TCATGTATTGATGGGCTTTCTTCT 58.241 37.500 0.00 0.00 0.00 2.85
272 273 6.319658 TCTTCATGTATTGATGGGCTTTCTTC 59.680 38.462 0.00 0.00 33.34 2.87
273 274 6.189859 TCTTCATGTATTGATGGGCTTTCTT 58.810 36.000 0.00 0.00 33.34 2.52
274 275 5.759059 TCTTCATGTATTGATGGGCTTTCT 58.241 37.500 0.00 0.00 33.34 2.52
275 276 6.069684 CTCTTCATGTATTGATGGGCTTTC 57.930 41.667 0.00 0.00 33.34 2.62
279 280 3.911661 GCTCTTCATGTATTGATGGGC 57.088 47.619 0.00 0.00 45.47 5.36
280 281 6.769822 ACTAAAGCTCTTCATGTATTGATGGG 59.230 38.462 0.00 0.00 33.98 4.00
281 282 7.798596 ACTAAAGCTCTTCATGTATTGATGG 57.201 36.000 0.00 0.00 33.34 3.51
282 283 7.642978 GCAACTAAAGCTCTTCATGTATTGATG 59.357 37.037 0.00 0.00 33.34 3.07
283 284 7.555554 AGCAACTAAAGCTCTTCATGTATTGAT 59.444 33.333 0.00 0.00 38.01 2.57
284 285 6.881065 AGCAACTAAAGCTCTTCATGTATTGA 59.119 34.615 0.00 0.00 38.01 2.57
285 286 7.081526 AGCAACTAAAGCTCTTCATGTATTG 57.918 36.000 0.00 0.00 38.01 1.90
286 287 8.792830 TTAGCAACTAAAGCTCTTCATGTATT 57.207 30.769 0.00 0.00 42.32 1.89
287 288 8.792830 TTTAGCAACTAAAGCTCTTCATGTAT 57.207 30.769 0.00 0.00 42.32 2.29
288 289 8.792830 ATTTAGCAACTAAAGCTCTTCATGTA 57.207 30.769 6.04 0.00 42.32 2.29
289 290 7.391554 TGATTTAGCAACTAAAGCTCTTCATGT 59.608 33.333 14.32 0.00 41.23 3.21
290 291 7.755591 TGATTTAGCAACTAAAGCTCTTCATG 58.244 34.615 14.32 0.00 41.23 3.07
291 292 7.928307 TGATTTAGCAACTAAAGCTCTTCAT 57.072 32.000 14.32 0.00 41.23 2.57
292 293 7.928307 ATGATTTAGCAACTAAAGCTCTTCA 57.072 32.000 14.32 8.95 41.23 3.02
319 320 8.348507 GCTTATGATTGCTAAGCTTACTTCATT 58.651 33.333 15.38 6.78 44.88 2.57
320 321 7.869800 GCTTATGATTGCTAAGCTTACTTCAT 58.130 34.615 0.86 10.50 44.88 2.57
321 322 7.251704 GCTTATGATTGCTAAGCTTACTTCA 57.748 36.000 0.86 4.02 44.88 3.02
331 332 5.684704 AGGTGCTTAGCTTATGATTGCTAA 58.315 37.500 5.60 10.54 45.78 3.09
332 333 5.296151 AGGTGCTTAGCTTATGATTGCTA 57.704 39.130 5.60 0.00 40.35 3.49
333 334 4.162040 AGGTGCTTAGCTTATGATTGCT 57.838 40.909 5.60 0.00 42.67 3.91
334 335 5.936054 CATAGGTGCTTAGCTTATGATTGC 58.064 41.667 5.60 0.00 0.00 3.56
353 354 6.520272 AGCAACTCTACTTCCTAATGCATAG 58.480 40.000 0.00 0.00 35.11 2.23
354 355 6.485830 AGCAACTCTACTTCCTAATGCATA 57.514 37.500 0.00 0.00 35.11 3.14
355 356 5.365021 AGCAACTCTACTTCCTAATGCAT 57.635 39.130 0.00 0.00 35.11 3.96
356 357 4.826274 AGCAACTCTACTTCCTAATGCA 57.174 40.909 0.00 0.00 35.11 3.96
357 358 5.235401 GCTTAGCAACTCTACTTCCTAATGC 59.765 44.000 0.00 0.00 0.00 3.56
358 359 6.578023 AGCTTAGCAACTCTACTTCCTAATG 58.422 40.000 7.07 0.00 0.00 1.90
359 360 6.800072 AGCTTAGCAACTCTACTTCCTAAT 57.200 37.500 7.07 0.00 0.00 1.73
360 361 7.899648 ATAGCTTAGCAACTCTACTTCCTAA 57.100 36.000 7.07 0.00 0.00 2.69
361 362 7.899648 AATAGCTTAGCAACTCTACTTCCTA 57.100 36.000 7.07 0.00 0.00 2.94
362 363 6.800072 AATAGCTTAGCAACTCTACTTCCT 57.200 37.500 7.07 0.00 0.00 3.36
363 364 8.943909 TTAAATAGCTTAGCAACTCTACTTCC 57.056 34.615 7.07 0.00 0.00 3.46
365 366 9.892130 ACATTAAATAGCTTAGCAACTCTACTT 57.108 29.630 7.07 0.00 0.00 2.24
366 367 9.319143 CACATTAAATAGCTTAGCAACTCTACT 57.681 33.333 7.07 0.00 0.00 2.57
367 368 8.064814 GCACATTAAATAGCTTAGCAACTCTAC 58.935 37.037 7.07 0.00 0.00 2.59
368 369 7.987458 AGCACATTAAATAGCTTAGCAACTCTA 59.013 33.333 7.07 0.00 32.52 2.43
369 370 6.825721 AGCACATTAAATAGCTTAGCAACTCT 59.174 34.615 7.07 0.00 32.52 3.24
370 371 7.020914 AGCACATTAAATAGCTTAGCAACTC 57.979 36.000 7.07 0.00 32.52 3.01
371 372 7.396540 AAGCACATTAAATAGCTTAGCAACT 57.603 32.000 7.07 0.00 44.73 3.16
377 378 9.760077 GAGGTACTAAGCACATTAAATAGCTTA 57.240 33.333 14.27 14.27 45.62 3.09
379 380 7.792032 TGAGGTACTAAGCACATTAAATAGCT 58.208 34.615 0.00 0.00 41.55 3.32
380 381 8.608844 ATGAGGTACTAAGCACATTAAATAGC 57.391 34.615 0.00 0.00 41.55 2.97
381 382 9.988815 AGATGAGGTACTAAGCACATTAAATAG 57.011 33.333 0.00 0.00 41.55 1.73
384 385 9.817809 CTTAGATGAGGTACTAAGCACATTAAA 57.182 33.333 0.00 0.00 41.55 1.52
393 394 6.656632 TGGATGCTTAGATGAGGTACTAAG 57.343 41.667 0.00 0.00 41.55 2.18
394 395 6.997655 CATGGATGCTTAGATGAGGTACTAA 58.002 40.000 0.00 0.00 41.55 2.24
395 396 6.596309 CATGGATGCTTAGATGAGGTACTA 57.404 41.667 0.00 0.00 41.55 1.82
424 425 2.095008 GGTCTTTTCTTTAGGCTGCTGC 60.095 50.000 7.10 7.10 38.76 5.25
425 426 3.190118 CAGGTCTTTTCTTTAGGCTGCTG 59.810 47.826 0.00 0.00 0.00 4.41
426 427 3.181439 ACAGGTCTTTTCTTTAGGCTGCT 60.181 43.478 0.00 0.00 0.00 4.24
427 428 3.149981 ACAGGTCTTTTCTTTAGGCTGC 58.850 45.455 0.00 0.00 0.00 5.25
428 429 6.655003 TGATTACAGGTCTTTTCTTTAGGCTG 59.345 38.462 0.00 0.00 0.00 4.85
429 430 6.779860 TGATTACAGGTCTTTTCTTTAGGCT 58.220 36.000 0.00 0.00 0.00 4.58
430 431 6.403746 GCTGATTACAGGTCTTTTCTTTAGGC 60.404 42.308 0.00 0.00 43.62 3.93
431 432 6.094186 GGCTGATTACAGGTCTTTTCTTTAGG 59.906 42.308 0.00 0.00 43.62 2.69
432 433 6.094186 GGGCTGATTACAGGTCTTTTCTTTAG 59.906 42.308 0.00 0.00 43.62 1.85
433 434 5.944007 GGGCTGATTACAGGTCTTTTCTTTA 59.056 40.000 0.00 0.00 43.62 1.85
434 435 4.767409 GGGCTGATTACAGGTCTTTTCTTT 59.233 41.667 0.00 0.00 43.62 2.52
435 436 4.336280 GGGCTGATTACAGGTCTTTTCTT 58.664 43.478 0.00 0.00 43.62 2.52
436 437 3.619979 CGGGCTGATTACAGGTCTTTTCT 60.620 47.826 0.00 0.00 43.62 2.52
437 438 2.678336 CGGGCTGATTACAGGTCTTTTC 59.322 50.000 0.00 0.00 43.62 2.29
438 439 2.039879 ACGGGCTGATTACAGGTCTTTT 59.960 45.455 0.00 0.00 43.62 2.27
439 440 1.628846 ACGGGCTGATTACAGGTCTTT 59.371 47.619 0.00 0.00 43.62 2.52
440 441 1.276622 ACGGGCTGATTACAGGTCTT 58.723 50.000 0.00 0.00 43.62 3.01
441 442 2.154567 TACGGGCTGATTACAGGTCT 57.845 50.000 0.00 0.00 43.62 3.85
442 443 2.973694 TTACGGGCTGATTACAGGTC 57.026 50.000 0.00 0.00 43.62 3.85
443 444 2.158813 CCATTACGGGCTGATTACAGGT 60.159 50.000 0.00 0.00 43.62 4.00
444 445 2.494059 CCATTACGGGCTGATTACAGG 58.506 52.381 0.00 0.00 43.62 4.00
456 457 2.888534 CGCACGGACCCATTACGG 60.889 66.667 0.00 0.00 0.00 4.02
457 458 1.293267 AAACGCACGGACCCATTACG 61.293 55.000 0.00 0.00 0.00 3.18
458 459 1.662122 CTAAACGCACGGACCCATTAC 59.338 52.381 0.00 0.00 0.00 1.89
459 460 2.008045 GCTAAACGCACGGACCCATTA 61.008 52.381 0.00 0.00 38.92 1.90
460 461 1.303091 GCTAAACGCACGGACCCATT 61.303 55.000 0.00 0.00 38.92 3.16
461 462 1.743995 GCTAAACGCACGGACCCAT 60.744 57.895 0.00 0.00 38.92 4.00
462 463 2.357760 GCTAAACGCACGGACCCA 60.358 61.111 0.00 0.00 38.92 4.51
463 464 2.357760 TGCTAAACGCACGGACCC 60.358 61.111 0.00 0.00 45.47 4.46
471 472 9.391794 CGTTAATTTATCAAAAATGCTAAACGC 57.608 29.630 0.00 0.00 39.77 4.84
477 478 9.353999 GGTCTTCGTTAATTTATCAAAAATGCT 57.646 29.630 0.00 0.00 0.00 3.79
478 479 8.592155 GGGTCTTCGTTAATTTATCAAAAATGC 58.408 33.333 0.00 0.00 0.00 3.56
479 480 9.632807 TGGGTCTTCGTTAATTTATCAAAAATG 57.367 29.630 0.00 0.00 0.00 2.32
485 486 9.839817 TGATTATGGGTCTTCGTTAATTTATCA 57.160 29.630 0.00 0.00 0.00 2.15
487 488 8.784043 GCTGATTATGGGTCTTCGTTAATTTAT 58.216 33.333 0.00 0.00 0.00 1.40
488 489 7.227910 GGCTGATTATGGGTCTTCGTTAATTTA 59.772 37.037 0.00 0.00 0.00 1.40
489 490 6.039382 GGCTGATTATGGGTCTTCGTTAATTT 59.961 38.462 0.00 0.00 0.00 1.82
490 491 5.531287 GGCTGATTATGGGTCTTCGTTAATT 59.469 40.000 0.00 0.00 0.00 1.40
491 492 5.063880 GGCTGATTATGGGTCTTCGTTAAT 58.936 41.667 0.00 0.00 0.00 1.40
492 493 4.448210 GGCTGATTATGGGTCTTCGTTAA 58.552 43.478 0.00 0.00 0.00 2.01
493 494 3.181458 GGGCTGATTATGGGTCTTCGTTA 60.181 47.826 0.00 0.00 0.00 3.18
494 495 2.421529 GGGCTGATTATGGGTCTTCGTT 60.422 50.000 0.00 0.00 0.00 3.85
495 496 1.141053 GGGCTGATTATGGGTCTTCGT 59.859 52.381 0.00 0.00 0.00 3.85
496 497 1.873903 CGGGCTGATTATGGGTCTTCG 60.874 57.143 0.00 0.00 0.00 3.79
497 498 1.141053 ACGGGCTGATTATGGGTCTTC 59.859 52.381 0.00 0.00 0.00 2.87
498 499 1.213296 ACGGGCTGATTATGGGTCTT 58.787 50.000 0.00 0.00 0.00 3.01
499 500 2.097110 TACGGGCTGATTATGGGTCT 57.903 50.000 0.00 0.00 0.00 3.85
500 501 2.922740 TTACGGGCTGATTATGGGTC 57.077 50.000 0.00 0.00 0.00 4.46
501 502 2.224769 CCATTACGGGCTGATTATGGGT 60.225 50.000 0.00 0.00 31.15 4.51
502 503 2.436417 CCATTACGGGCTGATTATGGG 58.564 52.381 0.00 0.00 31.15 4.00
514 515 2.888534 CGCACGGACCCATTACGG 60.889 66.667 0.00 0.00 0.00 4.02
515 516 1.293267 AAACGCACGGACCCATTACG 61.293 55.000 0.00 0.00 0.00 3.18
516 517 1.662122 CTAAACGCACGGACCCATTAC 59.338 52.381 0.00 0.00 0.00 1.89
517 518 2.008045 GCTAAACGCACGGACCCATTA 61.008 52.381 0.00 0.00 38.92 1.90
518 519 1.303091 GCTAAACGCACGGACCCATT 61.303 55.000 0.00 0.00 38.92 3.16
519 520 1.743995 GCTAAACGCACGGACCCAT 60.744 57.895 0.00 0.00 38.92 4.00
520 521 2.357760 GCTAAACGCACGGACCCA 60.358 61.111 0.00 0.00 38.92 4.51
521 522 2.357760 TGCTAAACGCACGGACCC 60.358 61.111 0.00 0.00 45.47 4.46
529 530 9.391794 CGTTAATTTATCAAAAATGCTAAACGC 57.608 29.630 0.00 0.00 39.77 4.84
534 535 8.865001 GCCAACGTTAATTTATCAAAAATGCTA 58.135 29.630 0.00 0.00 0.00 3.49
535 536 7.386299 TGCCAACGTTAATTTATCAAAAATGCT 59.614 29.630 0.00 0.00 0.00 3.79
536 537 7.477112 GTGCCAACGTTAATTTATCAAAAATGC 59.523 33.333 0.00 0.00 0.00 3.56
537 538 7.682055 CGTGCCAACGTTAATTTATCAAAAATG 59.318 33.333 0.00 0.00 44.93 2.32
538 539 7.725142 CGTGCCAACGTTAATTTATCAAAAAT 58.275 30.769 0.00 0.00 44.93 1.82
539 540 7.095024 CGTGCCAACGTTAATTTATCAAAAA 57.905 32.000 0.00 0.00 44.93 1.94
540 541 6.677027 CGTGCCAACGTTAATTTATCAAAA 57.323 33.333 0.00 0.00 44.93 2.44
582 583 1.466167 CATTCAGCCAACTCTCAACCG 59.534 52.381 0.00 0.00 0.00 4.44
583 584 1.815003 CCATTCAGCCAACTCTCAACC 59.185 52.381 0.00 0.00 0.00 3.77
625 626 3.575256 TCCAATAGTCTGGTGTGTACGTT 59.425 43.478 0.00 0.00 37.74 3.99
643 644 1.487142 TGTCGTCCTGTCCTTTTCCAA 59.513 47.619 0.00 0.00 0.00 3.53
645 646 1.070289 ACTGTCGTCCTGTCCTTTTCC 59.930 52.381 0.00 0.00 0.00 3.13
661 662 1.623542 GGGCCGGGATCACTAACTGT 61.624 60.000 2.18 0.00 0.00 3.55
701 706 1.134788 GGTCGTCGGAAGGAACATGAT 60.135 52.381 0.00 0.00 0.00 2.45
723 728 9.965902 CAGGAAGGCCTTATAGATTATTAATGT 57.034 33.333 20.54 0.00 43.90 2.71
793 893 9.595823 CAAATATTTAAGAACGAAGGGAGTAGA 57.404 33.333 0.00 0.00 0.00 2.59
795 895 9.374838 GACAAATATTTAAGAACGAAGGGAGTA 57.625 33.333 0.00 0.00 0.00 2.59
796 896 8.101419 AGACAAATATTTAAGAACGAAGGGAGT 58.899 33.333 0.00 0.00 0.00 3.85
798 898 8.857694 AAGACAAATATTTAAGAACGAAGGGA 57.142 30.769 0.00 0.00 0.00 4.20
799 899 9.556030 GAAAGACAAATATTTAAGAACGAAGGG 57.444 33.333 0.00 0.00 0.00 3.95
842 942 9.863845 TCACTCATTTTATTTCGTATGTAGTCA 57.136 29.630 0.00 0.00 0.00 3.41
886 986 9.923143 GCTACCACATACAGATGTATATAAACA 57.077 33.333 5.21 0.00 44.82 2.83
887 987 9.367444 GGCTACCACATACAGATGTATATAAAC 57.633 37.037 5.21 0.00 44.82 2.01
888 988 8.537016 GGGCTACCACATACAGATGTATATAAA 58.463 37.037 5.21 0.00 44.82 1.40
889 989 7.676468 TGGGCTACCACATACAGATGTATATAA 59.324 37.037 5.21 0.00 44.82 0.98
890 990 7.186268 TGGGCTACCACATACAGATGTATATA 58.814 38.462 5.21 0.00 44.82 0.86
891 991 6.022958 TGGGCTACCACATACAGATGTATAT 58.977 40.000 5.21 0.00 44.82 0.86
892 992 5.399113 TGGGCTACCACATACAGATGTATA 58.601 41.667 5.21 0.00 44.82 1.47
893 993 4.231273 TGGGCTACCACATACAGATGTAT 58.769 43.478 0.00 0.00 44.82 2.29
894 994 3.648739 TGGGCTACCACATACAGATGTA 58.351 45.455 0.00 0.00 44.82 2.29
907 1007 7.339466 TCTTTTAGAGATTTCAAATGGGCTACC 59.661 37.037 0.00 0.00 37.24 3.18
908 1008 8.184848 GTCTTTTAGAGATTTCAAATGGGCTAC 58.815 37.037 0.00 0.00 36.61 3.58
909 1009 7.888021 TGTCTTTTAGAGATTTCAAATGGGCTA 59.112 33.333 0.00 0.00 36.61 3.93
910 1010 6.721208 TGTCTTTTAGAGATTTCAAATGGGCT 59.279 34.615 0.00 0.00 36.61 5.19
911 1011 6.924111 TGTCTTTTAGAGATTTCAAATGGGC 58.076 36.000 0.00 0.00 36.61 5.36
912 1012 9.933723 AATTGTCTTTTAGAGATTTCAAATGGG 57.066 29.630 0.00 0.00 36.61 4.00
925 1025 9.947433 TCCGTTCCTAAATAATTGTCTTTTAGA 57.053 29.630 10.87 0.00 35.79 2.10
927 1027 9.169592 CCTCCGTTCCTAAATAATTGTCTTTTA 57.830 33.333 0.00 0.00 0.00 1.52
928 1028 7.122204 CCCTCCGTTCCTAAATAATTGTCTTTT 59.878 37.037 0.00 0.00 0.00 2.27
929 1029 6.602009 CCCTCCGTTCCTAAATAATTGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
930 1030 6.069847 TCCCTCCGTTCCTAAATAATTGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
931 1031 5.427481 TCCCTCCGTTCCTAAATAATTGTCT 59.573 40.000 0.00 0.00 0.00 3.41
932 1032 5.677567 TCCCTCCGTTCCTAAATAATTGTC 58.322 41.667 0.00 0.00 0.00 3.18
933 1033 5.191124 ACTCCCTCCGTTCCTAAATAATTGT 59.809 40.000 0.00 0.00 0.00 2.71
934 1034 5.681639 ACTCCCTCCGTTCCTAAATAATTG 58.318 41.667 0.00 0.00 0.00 2.32
935 1035 5.970501 ACTCCCTCCGTTCCTAAATAATT 57.029 39.130 0.00 0.00 0.00 1.40
936 1036 5.010415 CGTACTCCCTCCGTTCCTAAATAAT 59.990 44.000 0.00 0.00 0.00 1.28
937 1037 4.339247 CGTACTCCCTCCGTTCCTAAATAA 59.661 45.833 0.00 0.00 0.00 1.40
938 1038 3.885297 CGTACTCCCTCCGTTCCTAAATA 59.115 47.826 0.00 0.00 0.00 1.40
939 1039 2.692041 CGTACTCCCTCCGTTCCTAAAT 59.308 50.000 0.00 0.00 0.00 1.40
940 1040 2.094675 CGTACTCCCTCCGTTCCTAAA 58.905 52.381 0.00 0.00 0.00 1.85
941 1041 1.004745 ACGTACTCCCTCCGTTCCTAA 59.995 52.381 0.00 0.00 0.00 2.69
942 1042 0.620556 ACGTACTCCCTCCGTTCCTA 59.379 55.000 0.00 0.00 0.00 2.94
943 1043 0.620556 TACGTACTCCCTCCGTTCCT 59.379 55.000 0.00 0.00 36.12 3.36
944 1044 1.463674 TTACGTACTCCCTCCGTTCC 58.536 55.000 0.00 0.00 36.12 3.62
945 1045 3.790152 AATTACGTACTCCCTCCGTTC 57.210 47.619 0.00 0.00 36.12 3.95
946 1046 4.889409 TGATAATTACGTACTCCCTCCGTT 59.111 41.667 0.00 0.00 36.12 4.44
947 1047 4.464008 TGATAATTACGTACTCCCTCCGT 58.536 43.478 0.00 0.00 38.53 4.69
948 1048 5.443185 TTGATAATTACGTACTCCCTCCG 57.557 43.478 0.00 0.00 0.00 4.63
949 1049 5.221382 TGCTTGATAATTACGTACTCCCTCC 60.221 44.000 0.00 0.00 0.00 4.30
950 1050 5.839621 TGCTTGATAATTACGTACTCCCTC 58.160 41.667 0.00 0.00 0.00 4.30
951 1051 5.864418 TGCTTGATAATTACGTACTCCCT 57.136 39.130 0.00 0.00 0.00 4.20
952 1052 7.012044 ACAAATGCTTGATAATTACGTACTCCC 59.988 37.037 0.00 0.00 36.33 4.30
953 1053 7.916552 ACAAATGCTTGATAATTACGTACTCC 58.083 34.615 0.00 0.00 36.33 3.85
954 1054 8.600625 TGACAAATGCTTGATAATTACGTACTC 58.399 33.333 0.00 0.00 36.33 2.59
955 1055 8.487313 TGACAAATGCTTGATAATTACGTACT 57.513 30.769 0.00 0.00 36.33 2.73
966 1066 5.416639 TGCTACTCAATGACAAATGCTTGAT 59.583 36.000 0.00 0.00 36.33 2.57
977 1077 7.115378 CCATTGTTTTTCTTGCTACTCAATGAC 59.885 37.037 13.62 0.00 41.52 3.06
1207 2404 3.188786 CACGAAGCTACTGCCGGC 61.189 66.667 22.73 22.73 40.80 6.13
1293 2499 4.021456 CCCTTGGGGTAATTTGTGAAGTTC 60.021 45.833 0.00 0.00 38.25 3.01
1449 2655 2.125147 AGCTTATCGCGGCAGCAA 60.125 55.556 21.70 0.00 45.49 3.91
1513 2722 1.138859 CAGGTCCTGCATATCCAACGA 59.861 52.381 5.79 0.00 0.00 3.85
1518 2727 3.118038 TGGTAAACAGGTCCTGCATATCC 60.118 47.826 19.40 14.54 34.37 2.59
1629 2838 2.876581 CATGACAGCTTCCATGGCA 58.123 52.632 6.96 0.00 40.74 4.92
1660 2869 0.466189 GATGGCACCATGTTCCGGAT 60.466 55.000 4.15 0.00 36.70 4.18
1678 2887 6.016860 CACTTCATCAACTTCCAACAAGATGA 60.017 38.462 0.00 0.00 39.81 2.92
1686 2895 7.873719 TTTTAGACACTTCATCAACTTCCAA 57.126 32.000 0.00 0.00 0.00 3.53
1702 2911 0.614294 TCCGGGCCGATTTTTAGACA 59.386 50.000 30.79 0.00 0.00 3.41
1749 2958 1.344438 TCTCTGACAAATCGGTGCAGT 59.656 47.619 0.00 0.00 32.47 4.40
1754 2963 4.403752 TCATCATCTCTCTGACAAATCGGT 59.596 41.667 0.00 0.00 32.47 4.69
1766 2975 5.593909 TCTCTCCACTTCTTCATCATCTCTC 59.406 44.000 0.00 0.00 0.00 3.20
1777 2986 1.258676 GGTCCGTCTCTCCACTTCTT 58.741 55.000 0.00 0.00 0.00 2.52
1782 2991 2.574399 GCTGGTCCGTCTCTCCAC 59.426 66.667 0.00 0.00 0.00 4.02
1783 2992 2.680352 GGCTGGTCCGTCTCTCCA 60.680 66.667 0.00 0.00 0.00 3.86
1799 3008 4.139786 CTCTTTATCCATGTCCATGTGGG 58.860 47.826 6.53 0.00 37.11 4.61
1802 3011 4.508551 TGCTCTTTATCCATGTCCATGT 57.491 40.909 6.53 0.00 37.11 3.21
1803 3012 5.128205 TCTTGCTCTTTATCCATGTCCATG 58.872 41.667 0.14 0.14 38.51 3.66
1804 3013 5.378230 TCTTGCTCTTTATCCATGTCCAT 57.622 39.130 0.00 0.00 0.00 3.41
1805 3014 4.842531 TCTTGCTCTTTATCCATGTCCA 57.157 40.909 0.00 0.00 0.00 4.02
1806 3015 7.807977 TTTATCTTGCTCTTTATCCATGTCC 57.192 36.000 0.00 0.00 0.00 4.02
1807 3016 9.727627 CTTTTTATCTTGCTCTTTATCCATGTC 57.272 33.333 0.00 0.00 0.00 3.06
1816 3025 8.691661 TGTACCTTCTTTTTATCTTGCTCTTT 57.308 30.769 0.00 0.00 0.00 2.52
1832 3041 7.996644 TGTAGGAAGAAACAATTTGTACCTTCT 59.003 33.333 25.94 18.76 38.18 2.85
1836 3045 7.175990 TGGATGTAGGAAGAAACAATTTGTACC 59.824 37.037 1.76 2.72 0.00 3.34
1840 3049 7.756722 GTCATGGATGTAGGAAGAAACAATTTG 59.243 37.037 0.00 0.00 0.00 2.32
1878 3087 0.039256 TAGGTTTTCCGTGGTCGTCG 60.039 55.000 0.00 0.00 46.35 5.12
1914 3123 4.142600 GCAAACATGTAGTTGATCAGGGTC 60.143 45.833 13.30 0.00 41.19 4.46
1926 3135 0.168788 CACGCCCAGCAAACATGTAG 59.831 55.000 0.00 0.00 0.00 2.74
2059 3268 2.769652 ATCATGTGGTTGCCGCTGGT 62.770 55.000 0.00 0.00 34.70 4.00
2063 3272 0.029834 GATCATCATGTGGTTGCCGC 59.970 55.000 0.00 0.00 34.12 6.53
2077 3289 3.134442 GTCTCCTCTGGCTCAAAGATCAT 59.866 47.826 0.00 0.00 0.00 2.45
2194 3406 1.884075 TTGTGACCGCTCGGCAGTAT 61.884 55.000 8.41 0.00 39.32 2.12
2451 3663 2.501316 CCCTCCCACCATTTCAAAATCC 59.499 50.000 0.00 0.00 0.00 3.01
2491 3703 4.276058 TCATCTTGAGCACAACTGATGA 57.724 40.909 18.43 18.43 41.23 2.92
2577 3789 7.727181 AGAAGCTTAGACGAATTACATGGTAT 58.273 34.615 0.00 0.00 0.00 2.73
2672 3888 6.726299 TGTGGGGATATCCAGAAATACTCTAG 59.274 42.308 23.27 0.00 37.50 2.43
2754 3981 5.290885 CGATGTTTTTCAGTACGATGGATCA 59.709 40.000 0.00 0.00 0.00 2.92
2768 3995 7.795431 TGAAGTGCAAATATCGATGTTTTTC 57.205 32.000 16.44 16.53 0.00 2.29
2781 4009 5.048083 ACGTAATGTGGAATGAAGTGCAAAT 60.048 36.000 0.00 0.00 0.00 2.32
2785 4013 4.419522 AACGTAATGTGGAATGAAGTGC 57.580 40.909 0.00 0.00 0.00 4.40
2823 4051 8.682710 TGTAACTCATTTGGTTTTATAGATGGC 58.317 33.333 0.00 0.00 0.00 4.40
2937 4170 7.928167 TGTCAAGATTATATCCATCACAGACAC 59.072 37.037 0.00 0.00 30.05 3.67
2958 4191 5.476950 TCCTACCCTCCTAGTATTGTCAA 57.523 43.478 0.00 0.00 0.00 3.18
2972 4205 2.868964 TGCCTCTACATTCCTACCCT 57.131 50.000 0.00 0.00 0.00 4.34
3023 4257 7.013274 GCCTTAATGTGTATAAATCCTTGAGCA 59.987 37.037 0.00 0.00 0.00 4.26
3041 4275 1.097547 CACCGCAGAGGGCCTTAATG 61.098 60.000 7.89 8.81 46.96 1.90
3042 4276 1.224592 CACCGCAGAGGGCCTTAAT 59.775 57.895 7.89 0.00 46.96 1.40
3063 4298 3.705072 GCACCACAGAGTAGGGTATTACT 59.295 47.826 0.00 0.00 36.61 2.24
3081 4316 1.135333 ACGCTAAGAGCTAAGAGCACC 59.865 52.381 12.27 0.00 45.56 5.01
3136 4372 2.552093 TAAGCTAGGAGTGAAGCCCT 57.448 50.000 0.00 0.00 39.64 5.19
3144 4380 4.396790 GCGCACTCTATATAAGCTAGGAGT 59.603 45.833 0.30 0.00 0.00 3.85
3234 4470 5.796350 CAGTTACCAGTAGTAAATGCCAC 57.204 43.478 0.00 0.00 46.45 5.01
3305 4595 3.070302 GGACGAAGATGAAGGGAGCTATT 59.930 47.826 0.00 0.00 0.00 1.73
3335 4648 2.494073 GCTCAGCCTACTGTCAAGTACT 59.506 50.000 0.00 0.00 44.77 2.73
3450 4763 9.569122 TCGGAGGTCGATGATCATATAATATAA 57.431 33.333 8.54 0.00 43.74 0.98
3467 4780 2.996168 GAATGGCCCATCGGAGGTCG 62.996 65.000 0.00 0.00 40.90 4.79
3469 4782 1.355718 ATGAATGGCCCATCGGAGGT 61.356 55.000 0.00 0.00 0.00 3.85
3497 4810 6.016276 GTCGAGTTTATAAATACGGGGTAGGA 60.016 42.308 19.15 4.05 0.00 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.