Multiple sequence alignment - TraesCS7A01G014500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G014500 chr7A 100.000 3071 0 0 1 3071 6490445 6487375 0.000000e+00 5672.0
1 TraesCS7A01G014500 chr7A 100.000 30 0 0 2264 2293 409815459 409815488 4.280000e-04 56.5
2 TraesCS7A01G014500 chr5A 97.244 1524 17 6 711 2234 590559748 590561246 0.000000e+00 2558.0
3 TraesCS7A01G014500 chr5A 95.091 1487 44 5 749 2234 341872165 341870707 0.000000e+00 2314.0
4 TraesCS7A01G014500 chr5A 96.595 793 26 1 2280 3071 12029756 12030548 0.000000e+00 1314.0
5 TraesCS7A01G014500 chr5A 80.556 432 66 12 1658 2083 552841548 552841967 1.780000e-82 316.0
6 TraesCS7A01G014500 chr5A 78.019 323 58 8 1802 2123 611014171 611013861 1.120000e-44 191.0
7 TraesCS7A01G014500 chr6A 97.669 815 17 2 2256 3069 181015690 181016503 0.000000e+00 1399.0
8 TraesCS7A01G014500 chr6A 97.073 820 19 2 2256 3071 41989547 41988729 0.000000e+00 1376.0
9 TraesCS7A01G014500 chr6A 96.679 813 26 1 2260 3071 30261385 30262197 0.000000e+00 1351.0
10 TraesCS7A01G014500 chr6A 93.888 818 42 6 2259 3069 19887239 19886423 0.000000e+00 1227.0
11 TraesCS7A01G014500 chr2D 94.680 827 38 5 2247 3069 587202432 587201608 0.000000e+00 1279.0
12 TraesCS7A01G014500 chr6D 94.762 821 38 3 2252 3069 438803606 438804424 0.000000e+00 1273.0
13 TraesCS7A01G014500 chr4B 93.651 819 46 4 2258 3071 339484285 339483468 0.000000e+00 1219.0
14 TraesCS7A01G014500 chr7B 93.854 781 43 4 2294 3071 66816399 66815621 0.000000e+00 1171.0
15 TraesCS7A01G014500 chr7B 100.000 469 0 0 1486 1954 703296639 703296171 0.000000e+00 867.0
16 TraesCS7A01G014500 chr7B 94.488 381 12 1 1854 2234 703295484 703295113 2.050000e-161 579.0
17 TraesCS7A01G014500 chr7B 98.951 286 3 0 1572 1857 703296160 703295875 2.110000e-141 512.0
18 TraesCS7A01G014500 chr7B 83.026 542 77 10 1585 2123 614303400 614302871 7.700000e-131 477.0
19 TraesCS7A01G014500 chr7D 93.143 350 9 3 309 644 6577307 6576959 1.640000e-137 499.0
20 TraesCS7A01G014500 chr7D 88.696 230 11 3 309 523 597114996 597114767 1.820000e-67 267.0
21 TraesCS7A01G014500 chr7D 95.402 87 2 2 521 605 597111029 597110943 1.490000e-28 137.0
22 TraesCS7A01G014500 chr3B 83.210 542 76 10 1585 2123 66886021 66885492 1.660000e-132 483.0
23 TraesCS7A01G014500 chr3B 82.657 542 79 9 1585 2123 11645390 11644861 1.670000e-127 466.0
24 TraesCS7A01G014500 chr4D 80.851 517 88 11 881 1390 50980319 50980831 2.220000e-106 396.0
25 TraesCS7A01G014500 chr4D 79.016 305 62 2 1584 1887 50980932 50981235 1.120000e-49 207.0
26 TraesCS7A01G014500 chr3D 79.919 493 86 8 1591 2081 1699796 1699315 1.750000e-92 350.0
27 TraesCS7A01G014500 chr3D 83.665 251 31 5 1833 2083 22974358 22974598 8.570000e-56 228.0
28 TraesCS7A01G014500 chr2B 81.662 349 53 5 1717 2063 116330068 116329729 2.330000e-71 279.0
29 TraesCS7A01G014500 chr2B 86.726 113 12 2 2125 2234 29127568 29127680 4.160000e-24 122.0
30 TraesCS7A01G014500 chr2B 86.207 116 13 2 2123 2235 635064203 635064088 4.160000e-24 122.0
31 TraesCS7A01G014500 chr2B 85.586 111 13 2 2128 2235 737852369 737852259 2.500000e-21 113.0
32 TraesCS7A01G014500 chr2B 84.211 114 15 2 2125 2235 642830890 642831003 1.160000e-19 108.0
33 TraesCS7A01G014500 chr6B 86.250 240 32 1 1585 1823 56014820 56015059 3.040000e-65 259.0
34 TraesCS7A01G014500 chr1B 80.782 307 44 8 1763 2067 145158417 145158710 3.080000e-55 226.0
35 TraesCS7A01G014500 chr1B 87.324 71 6 2 2123 2190 145162664 145162734 9.130000e-11 78.7
36 TraesCS7A01G014500 chr1A 87.069 116 12 2 2123 2235 42499690 42499575 8.940000e-26 128.0
37 TraesCS7A01G014500 chr4A 88.095 84 6 3 92 175 737435188 737435267 2.520000e-16 97.1
38 TraesCS7A01G014500 chr4A 86.885 61 6 2 297 356 374690359 374690300 1.980000e-07 67.6
39 TraesCS7A01G014500 chr4A 90.000 50 4 1 307 356 374715411 374715459 2.560000e-06 63.9
40 TraesCS7A01G014500 chr5B 94.737 38 0 1 321 356 100777032 100777069 1.190000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G014500 chr7A 6487375 6490445 3070 True 5672.000000 5672 100.0000 1 3071 1 chr7A.!!$R1 3070
1 TraesCS7A01G014500 chr5A 590559748 590561246 1498 False 2558.000000 2558 97.2440 711 2234 1 chr5A.!!$F3 1523
2 TraesCS7A01G014500 chr5A 341870707 341872165 1458 True 2314.000000 2314 95.0910 749 2234 1 chr5A.!!$R1 1485
3 TraesCS7A01G014500 chr5A 12029756 12030548 792 False 1314.000000 1314 96.5950 2280 3071 1 chr5A.!!$F1 791
4 TraesCS7A01G014500 chr6A 181015690 181016503 813 False 1399.000000 1399 97.6690 2256 3069 1 chr6A.!!$F2 813
5 TraesCS7A01G014500 chr6A 41988729 41989547 818 True 1376.000000 1376 97.0730 2256 3071 1 chr6A.!!$R2 815
6 TraesCS7A01G014500 chr6A 30261385 30262197 812 False 1351.000000 1351 96.6790 2260 3071 1 chr6A.!!$F1 811
7 TraesCS7A01G014500 chr6A 19886423 19887239 816 True 1227.000000 1227 93.8880 2259 3069 1 chr6A.!!$R1 810
8 TraesCS7A01G014500 chr2D 587201608 587202432 824 True 1279.000000 1279 94.6800 2247 3069 1 chr2D.!!$R1 822
9 TraesCS7A01G014500 chr6D 438803606 438804424 818 False 1273.000000 1273 94.7620 2252 3069 1 chr6D.!!$F1 817
10 TraesCS7A01G014500 chr4B 339483468 339484285 817 True 1219.000000 1219 93.6510 2258 3071 1 chr4B.!!$R1 813
11 TraesCS7A01G014500 chr7B 66815621 66816399 778 True 1171.000000 1171 93.8540 2294 3071 1 chr7B.!!$R1 777
12 TraesCS7A01G014500 chr7B 703295113 703296639 1526 True 652.666667 867 97.8130 1486 2234 3 chr7B.!!$R3 748
13 TraesCS7A01G014500 chr7B 614302871 614303400 529 True 477.000000 477 83.0260 1585 2123 1 chr7B.!!$R2 538
14 TraesCS7A01G014500 chr7D 597110943 597114996 4053 True 202.000000 267 92.0490 309 605 2 chr7D.!!$R2 296
15 TraesCS7A01G014500 chr3B 66885492 66886021 529 True 483.000000 483 83.2100 1585 2123 1 chr3B.!!$R2 538
16 TraesCS7A01G014500 chr3B 11644861 11645390 529 True 466.000000 466 82.6570 1585 2123 1 chr3B.!!$R1 538
17 TraesCS7A01G014500 chr4D 50980319 50981235 916 False 301.500000 396 79.9335 881 1887 2 chr4D.!!$F1 1006

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
273 274 0.030603 GAGGAAGGGATGGAGGGAGT 60.031 60.0 0.00 0.0 0.00 3.85 F
661 4418 0.317103 CAACGGCGATAGAGAGGACG 60.317 60.0 16.62 0.0 39.76 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1330 5091 0.391263 GCCCGACGGTCATCTTTTCT 60.391 55.0 13.94 0.0 0.00 2.52 R
2241 6803 0.984995 GGGGAGAAGGCGCCTAATAT 59.015 55.0 33.07 15.2 37.84 1.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.358707 CTGCTGCACATCTTCAAACAA 57.641 42.857 0.00 0.00 0.00 2.83
21 22 3.909430 CTGCTGCACATCTTCAAACAAT 58.091 40.909 0.00 0.00 0.00 2.71
22 23 5.050644 CTGCTGCACATCTTCAAACAATA 57.949 39.130 0.00 0.00 0.00 1.90
23 24 5.450592 TGCTGCACATCTTCAAACAATAA 57.549 34.783 0.00 0.00 0.00 1.40
24 25 5.463286 TGCTGCACATCTTCAAACAATAAG 58.537 37.500 0.00 0.00 0.00 1.73
25 26 5.241285 TGCTGCACATCTTCAAACAATAAGA 59.759 36.000 0.00 0.00 36.24 2.10
26 27 6.151691 GCTGCACATCTTCAAACAATAAGAA 58.848 36.000 0.00 0.00 35.47 2.52
27 28 6.810182 GCTGCACATCTTCAAACAATAAGAAT 59.190 34.615 0.00 0.00 35.47 2.40
28 29 7.201410 GCTGCACATCTTCAAACAATAAGAATG 60.201 37.037 0.00 0.00 35.47 2.67
29 30 7.092079 TGCACATCTTCAAACAATAAGAATGG 58.908 34.615 0.00 0.00 35.47 3.16
30 31 7.092716 GCACATCTTCAAACAATAAGAATGGT 58.907 34.615 0.00 0.00 35.47 3.55
31 32 8.243426 GCACATCTTCAAACAATAAGAATGGTA 58.757 33.333 0.00 0.00 35.47 3.25
62 63 8.774586 ACAATACTAAATCGATTTACCAGATGC 58.225 33.333 23.43 0.00 0.00 3.91
63 64 7.907214 ATACTAAATCGATTTACCAGATGCC 57.093 36.000 23.43 0.00 0.00 4.40
64 65 5.930135 ACTAAATCGATTTACCAGATGCCT 58.070 37.500 23.43 1.56 0.00 4.75
65 66 5.760253 ACTAAATCGATTTACCAGATGCCTG 59.240 40.000 23.43 13.52 40.09 4.85
75 76 2.953466 CAGATGCCTGGTTTTGATGG 57.047 50.000 0.00 0.00 36.77 3.51
76 77 2.173519 CAGATGCCTGGTTTTGATGGT 58.826 47.619 0.00 0.00 36.77 3.55
77 78 2.094390 CAGATGCCTGGTTTTGATGGTG 60.094 50.000 0.00 0.00 36.77 4.17
78 79 1.895131 GATGCCTGGTTTTGATGGTGT 59.105 47.619 0.00 0.00 0.00 4.16
79 80 1.786937 TGCCTGGTTTTGATGGTGTT 58.213 45.000 0.00 0.00 0.00 3.32
80 81 2.950781 TGCCTGGTTTTGATGGTGTTA 58.049 42.857 0.00 0.00 0.00 2.41
81 82 3.300388 TGCCTGGTTTTGATGGTGTTAA 58.700 40.909 0.00 0.00 0.00 2.01
82 83 3.900601 TGCCTGGTTTTGATGGTGTTAAT 59.099 39.130 0.00 0.00 0.00 1.40
83 84 4.021544 TGCCTGGTTTTGATGGTGTTAATC 60.022 41.667 0.00 0.00 0.00 1.75
84 85 4.021544 GCCTGGTTTTGATGGTGTTAATCA 60.022 41.667 0.00 0.00 32.24 2.57
85 86 5.469479 CCTGGTTTTGATGGTGTTAATCAC 58.531 41.667 0.00 1.05 45.47 3.06
99 100 6.905428 GTGTTAATCACGTCGACACTATTAC 58.095 40.000 17.16 5.61 38.02 1.89
100 101 6.744537 GTGTTAATCACGTCGACACTATTACT 59.255 38.462 17.16 0.00 38.02 2.24
101 102 6.744082 TGTTAATCACGTCGACACTATTACTG 59.256 38.462 17.16 0.00 0.00 2.74
102 103 3.752412 TCACGTCGACACTATTACTGG 57.248 47.619 17.16 0.00 0.00 4.00
103 104 3.337358 TCACGTCGACACTATTACTGGA 58.663 45.455 17.16 0.00 0.00 3.86
104 105 3.752747 TCACGTCGACACTATTACTGGAA 59.247 43.478 17.16 0.00 0.00 3.53
105 106 4.216042 TCACGTCGACACTATTACTGGAAA 59.784 41.667 17.16 0.00 0.00 3.13
106 107 5.100259 CACGTCGACACTATTACTGGAAAT 58.900 41.667 17.16 0.00 0.00 2.17
107 108 5.004440 CACGTCGACACTATTACTGGAAATG 59.996 44.000 17.16 0.00 0.00 2.32
108 109 5.106038 ACGTCGACACTATTACTGGAAATGA 60.106 40.000 17.16 0.00 0.00 2.57
109 110 5.977725 CGTCGACACTATTACTGGAAATGAT 59.022 40.000 17.16 0.00 0.00 2.45
110 111 6.475727 CGTCGACACTATTACTGGAAATGATT 59.524 38.462 17.16 0.00 0.00 2.57
111 112 7.646526 CGTCGACACTATTACTGGAAATGATTA 59.353 37.037 17.16 0.00 0.00 1.75
112 113 9.477484 GTCGACACTATTACTGGAAATGATTAT 57.523 33.333 11.55 0.00 0.00 1.28
138 139 9.511272 TTCCTTTTTATTAAGTCAAGGGTCTAC 57.489 33.333 9.54 0.00 35.61 2.59
139 140 8.887393 TCCTTTTTATTAAGTCAAGGGTCTACT 58.113 33.333 9.54 0.00 35.61 2.57
140 141 9.163899 CCTTTTTATTAAGTCAAGGGTCTACTC 57.836 37.037 0.00 0.00 31.85 2.59
141 142 9.163899 CTTTTTATTAAGTCAAGGGTCTACTCC 57.836 37.037 0.00 0.00 0.00 3.85
142 143 7.801893 TTTATTAAGTCAAGGGTCTACTCCA 57.198 36.000 0.00 0.00 0.00 3.86
143 144 5.941555 ATTAAGTCAAGGGTCTACTCCAG 57.058 43.478 0.00 0.00 0.00 3.86
144 145 1.562783 AGTCAAGGGTCTACTCCAGC 58.437 55.000 0.00 0.00 0.00 4.85
145 146 1.077993 AGTCAAGGGTCTACTCCAGCT 59.922 52.381 0.00 0.00 0.00 4.24
146 147 1.903183 GTCAAGGGTCTACTCCAGCTT 59.097 52.381 0.00 0.00 0.00 3.74
147 148 2.093921 GTCAAGGGTCTACTCCAGCTTC 60.094 54.545 0.00 0.00 0.00 3.86
148 149 1.902508 CAAGGGTCTACTCCAGCTTCA 59.097 52.381 0.00 0.00 0.00 3.02
149 150 2.503356 CAAGGGTCTACTCCAGCTTCAT 59.497 50.000 0.00 0.00 0.00 2.57
150 151 2.393646 AGGGTCTACTCCAGCTTCATC 58.606 52.381 0.00 0.00 0.00 2.92
151 152 1.414550 GGGTCTACTCCAGCTTCATCC 59.585 57.143 0.00 0.00 0.00 3.51
152 153 2.111384 GGTCTACTCCAGCTTCATCCA 58.889 52.381 0.00 0.00 0.00 3.41
153 154 2.159028 GGTCTACTCCAGCTTCATCCAC 60.159 54.545 0.00 0.00 0.00 4.02
154 155 2.763448 GTCTACTCCAGCTTCATCCACT 59.237 50.000 0.00 0.00 0.00 4.00
155 156 3.954904 GTCTACTCCAGCTTCATCCACTA 59.045 47.826 0.00 0.00 0.00 2.74
156 157 3.954904 TCTACTCCAGCTTCATCCACTAC 59.045 47.826 0.00 0.00 0.00 2.73
157 158 1.834263 ACTCCAGCTTCATCCACTACC 59.166 52.381 0.00 0.00 0.00 3.18
158 159 1.833630 CTCCAGCTTCATCCACTACCA 59.166 52.381 0.00 0.00 0.00 3.25
159 160 2.237143 CTCCAGCTTCATCCACTACCAA 59.763 50.000 0.00 0.00 0.00 3.67
160 161 2.642311 TCCAGCTTCATCCACTACCAAA 59.358 45.455 0.00 0.00 0.00 3.28
161 162 3.073798 TCCAGCTTCATCCACTACCAAAA 59.926 43.478 0.00 0.00 0.00 2.44
162 163 4.019174 CCAGCTTCATCCACTACCAAAAT 58.981 43.478 0.00 0.00 0.00 1.82
163 164 4.463891 CCAGCTTCATCCACTACCAAAATT 59.536 41.667 0.00 0.00 0.00 1.82
164 165 5.047092 CCAGCTTCATCCACTACCAAAATTT 60.047 40.000 0.00 0.00 0.00 1.82
165 166 6.152661 CCAGCTTCATCCACTACCAAAATTTA 59.847 38.462 0.00 0.00 0.00 1.40
166 167 7.309744 CCAGCTTCATCCACTACCAAAATTTAA 60.310 37.037 0.00 0.00 0.00 1.52
167 168 7.756722 CAGCTTCATCCACTACCAAAATTTAAG 59.243 37.037 0.00 0.00 0.00 1.85
168 169 7.669722 AGCTTCATCCACTACCAAAATTTAAGA 59.330 33.333 0.00 0.00 0.00 2.10
169 170 7.970614 GCTTCATCCACTACCAAAATTTAAGAG 59.029 37.037 0.00 0.00 0.00 2.85
170 171 8.934023 TTCATCCACTACCAAAATTTAAGAGT 57.066 30.769 0.00 0.00 0.00 3.24
171 172 8.934023 TCATCCACTACCAAAATTTAAGAGTT 57.066 30.769 0.00 0.00 0.00 3.01
172 173 9.362151 TCATCCACTACCAAAATTTAAGAGTTT 57.638 29.630 0.00 0.00 0.00 2.66
173 174 9.981114 CATCCACTACCAAAATTTAAGAGTTTT 57.019 29.630 0.00 0.00 0.00 2.43
196 197 4.989279 TTACTCTACCGACATACCAACC 57.011 45.455 0.00 0.00 0.00 3.77
197 198 3.097342 ACTCTACCGACATACCAACCT 57.903 47.619 0.00 0.00 0.00 3.50
198 199 4.240881 ACTCTACCGACATACCAACCTA 57.759 45.455 0.00 0.00 0.00 3.08
199 200 4.603131 ACTCTACCGACATACCAACCTAA 58.397 43.478 0.00 0.00 0.00 2.69
200 201 4.643784 ACTCTACCGACATACCAACCTAAG 59.356 45.833 0.00 0.00 0.00 2.18
201 202 2.685850 ACCGACATACCAACCTAAGC 57.314 50.000 0.00 0.00 0.00 3.09
202 203 1.903860 ACCGACATACCAACCTAAGCA 59.096 47.619 0.00 0.00 0.00 3.91
203 204 2.303600 ACCGACATACCAACCTAAGCAA 59.696 45.455 0.00 0.00 0.00 3.91
204 205 3.054655 ACCGACATACCAACCTAAGCAAT 60.055 43.478 0.00 0.00 0.00 3.56
205 206 3.945285 CCGACATACCAACCTAAGCAATT 59.055 43.478 0.00 0.00 0.00 2.32
206 207 4.398044 CCGACATACCAACCTAAGCAATTT 59.602 41.667 0.00 0.00 0.00 1.82
207 208 5.587043 CCGACATACCAACCTAAGCAATTTA 59.413 40.000 0.00 0.00 0.00 1.40
208 209 6.094325 CCGACATACCAACCTAAGCAATTTAA 59.906 38.462 0.00 0.00 0.00 1.52
209 210 7.186804 CGACATACCAACCTAAGCAATTTAAG 58.813 38.462 0.00 0.00 0.00 1.85
210 211 7.065324 CGACATACCAACCTAAGCAATTTAAGA 59.935 37.037 0.00 0.00 0.00 2.10
211 212 8.281212 ACATACCAACCTAAGCAATTTAAGAG 57.719 34.615 0.00 0.00 0.00 2.85
212 213 7.339466 ACATACCAACCTAAGCAATTTAAGAGG 59.661 37.037 0.00 0.00 0.00 3.69
213 214 5.641155 ACCAACCTAAGCAATTTAAGAGGT 58.359 37.500 0.00 0.00 0.00 3.85
214 215 6.075315 ACCAACCTAAGCAATTTAAGAGGTT 58.925 36.000 5.99 5.99 38.74 3.50
215 216 6.553476 ACCAACCTAAGCAATTTAAGAGGTTT 59.447 34.615 8.29 0.00 36.41 3.27
216 217 7.726738 ACCAACCTAAGCAATTTAAGAGGTTTA 59.273 33.333 8.29 0.00 36.41 2.01
217 218 8.749354 CCAACCTAAGCAATTTAAGAGGTTTAT 58.251 33.333 8.29 0.00 36.41 1.40
269 270 6.710499 ATTTATAAGAGGAAGGGATGGAGG 57.290 41.667 0.00 0.00 0.00 4.30
270 271 2.496679 TAAGAGGAAGGGATGGAGGG 57.503 55.000 0.00 0.00 0.00 4.30
271 272 0.725133 AAGAGGAAGGGATGGAGGGA 59.275 55.000 0.00 0.00 0.00 4.20
272 273 0.267356 AGAGGAAGGGATGGAGGGAG 59.733 60.000 0.00 0.00 0.00 4.30
273 274 0.030603 GAGGAAGGGATGGAGGGAGT 60.031 60.000 0.00 0.00 0.00 3.85
274 275 0.423544 AGGAAGGGATGGAGGGAGTT 59.576 55.000 0.00 0.00 0.00 3.01
275 276 0.548510 GGAAGGGATGGAGGGAGTTG 59.451 60.000 0.00 0.00 0.00 3.16
276 277 0.548510 GAAGGGATGGAGGGAGTTGG 59.451 60.000 0.00 0.00 0.00 3.77
277 278 0.921256 AAGGGATGGAGGGAGTTGGG 60.921 60.000 0.00 0.00 0.00 4.12
278 279 2.386935 GGGATGGAGGGAGTTGGGG 61.387 68.421 0.00 0.00 0.00 4.96
279 280 2.597903 GATGGAGGGAGTTGGGGC 59.402 66.667 0.00 0.00 0.00 5.80
280 281 3.406595 GATGGAGGGAGTTGGGGCG 62.407 68.421 0.00 0.00 0.00 6.13
281 282 4.974438 TGGAGGGAGTTGGGGCGT 62.974 66.667 0.00 0.00 0.00 5.68
282 283 2.686106 GGAGGGAGTTGGGGCGTA 60.686 66.667 0.00 0.00 0.00 4.42
283 284 2.582978 GAGGGAGTTGGGGCGTAC 59.417 66.667 0.00 0.00 0.00 3.67
284 285 3.007323 AGGGAGTTGGGGCGTACC 61.007 66.667 0.00 0.00 39.11 3.34
285 286 3.324108 GGGAGTTGGGGCGTACCA 61.324 66.667 0.83 0.00 42.91 3.25
291 292 3.554962 TTGGGGCGTACCAATGTAC 57.445 52.632 8.58 0.00 45.19 2.90
292 293 0.691332 TTGGGGCGTACCAATGTACA 59.309 50.000 8.58 0.00 46.33 2.90
293 294 0.691332 TGGGGCGTACCAATGTACAA 59.309 50.000 0.00 0.00 46.33 2.41
294 295 1.282447 TGGGGCGTACCAATGTACAAT 59.718 47.619 0.00 0.00 46.33 2.71
295 296 1.944709 GGGGCGTACCAATGTACAATC 59.055 52.381 0.00 0.00 46.33 2.67
296 297 1.944709 GGGCGTACCAATGTACAATCC 59.055 52.381 0.00 0.00 46.33 3.01
297 298 1.944709 GGCGTACCAATGTACAATCCC 59.055 52.381 0.00 0.00 46.33 3.85
298 299 1.944709 GCGTACCAATGTACAATCCCC 59.055 52.381 0.00 0.00 46.33 4.81
299 300 2.681390 GCGTACCAATGTACAATCCCCA 60.681 50.000 0.00 0.00 46.33 4.96
300 301 3.611970 CGTACCAATGTACAATCCCCAA 58.388 45.455 0.00 0.00 46.33 4.12
301 302 3.375922 CGTACCAATGTACAATCCCCAAC 59.624 47.826 0.00 0.00 46.33 3.77
302 303 3.825908 ACCAATGTACAATCCCCAACT 57.174 42.857 0.00 0.00 0.00 3.16
303 304 3.697166 ACCAATGTACAATCCCCAACTC 58.303 45.455 0.00 0.00 0.00 3.01
304 305 3.333680 ACCAATGTACAATCCCCAACTCT 59.666 43.478 0.00 0.00 0.00 3.24
305 306 3.947834 CCAATGTACAATCCCCAACTCTC 59.052 47.826 0.00 0.00 0.00 3.20
306 307 3.933861 ATGTACAATCCCCAACTCTCC 57.066 47.619 0.00 0.00 0.00 3.71
307 308 2.915869 TGTACAATCCCCAACTCTCCT 58.084 47.619 0.00 0.00 0.00 3.69
308 309 3.256704 TGTACAATCCCCAACTCTCCTT 58.743 45.455 0.00 0.00 0.00 3.36
309 310 3.655777 TGTACAATCCCCAACTCTCCTTT 59.344 43.478 0.00 0.00 0.00 3.11
310 311 4.847512 TGTACAATCCCCAACTCTCCTTTA 59.152 41.667 0.00 0.00 0.00 1.85
311 312 5.311121 TGTACAATCCCCAACTCTCCTTTAA 59.689 40.000 0.00 0.00 0.00 1.52
312 313 5.536497 ACAATCCCCAACTCTCCTTTAAT 57.464 39.130 0.00 0.00 0.00 1.40
313 314 6.652205 ACAATCCCCAACTCTCCTTTAATA 57.348 37.500 0.00 0.00 0.00 0.98
314 315 6.424032 ACAATCCCCAACTCTCCTTTAATAC 58.576 40.000 0.00 0.00 0.00 1.89
315 316 6.217693 ACAATCCCCAACTCTCCTTTAATACT 59.782 38.462 0.00 0.00 0.00 2.12
316 317 6.910259 ATCCCCAACTCTCCTTTAATACTT 57.090 37.500 0.00 0.00 0.00 2.24
374 375 6.146760 ACAAATATCCTCACATCCTCCTACT 58.853 40.000 0.00 0.00 0.00 2.57
389 390 5.485353 TCCTCCTACTCAAAGAACACATCAT 59.515 40.000 0.00 0.00 0.00 2.45
390 391 5.583854 CCTCCTACTCAAAGAACACATCATG 59.416 44.000 0.00 0.00 0.00 3.07
427 428 8.519526 GGATCAATTTTTGTAGATGTGGTACAA 58.480 33.333 0.00 0.00 44.16 2.41
493 508 6.096036 GCTTTTTCTCTTTTAGAATGAGCCC 58.904 40.000 9.79 0.00 43.75 5.19
533 4288 5.289595 TCACACGGATGTTGCTTATATCTC 58.710 41.667 0.00 0.00 36.72 2.75
544 4299 5.001833 TGCTTATATCTCCAATTGCCCAT 57.998 39.130 0.00 0.00 0.00 4.00
556 4311 2.363306 TTGCCCATGAGTGAAGTGTT 57.637 45.000 0.00 0.00 0.00 3.32
605 4362 6.516739 TCATACTACTGAAGAAGTCCAGTG 57.483 41.667 0.00 0.00 42.88 3.66
606 4363 3.669251 ACTACTGAAGAAGTCCAGTGC 57.331 47.619 0.00 0.00 42.88 4.40
607 4364 2.965831 ACTACTGAAGAAGTCCAGTGCA 59.034 45.455 0.00 0.00 42.88 4.57
608 4365 3.388024 ACTACTGAAGAAGTCCAGTGCAA 59.612 43.478 0.00 0.00 42.88 4.08
609 4366 3.281727 ACTGAAGAAGTCCAGTGCAAA 57.718 42.857 0.00 0.00 41.59 3.68
610 4367 3.620488 ACTGAAGAAGTCCAGTGCAAAA 58.380 40.909 0.00 0.00 41.59 2.44
611 4368 4.016444 ACTGAAGAAGTCCAGTGCAAAAA 58.984 39.130 0.00 0.00 41.59 1.94
612 4369 4.142381 ACTGAAGAAGTCCAGTGCAAAAAC 60.142 41.667 0.00 0.00 41.59 2.43
613 4370 3.181501 TGAAGAAGTCCAGTGCAAAAACG 60.182 43.478 0.00 0.00 0.00 3.60
614 4371 2.365582 AGAAGTCCAGTGCAAAAACGT 58.634 42.857 0.00 0.00 0.00 3.99
615 4372 2.097466 AGAAGTCCAGTGCAAAAACGTG 59.903 45.455 0.00 0.00 0.00 4.49
616 4373 1.745232 AGTCCAGTGCAAAAACGTGA 58.255 45.000 0.00 0.00 0.00 4.35
617 4374 1.670811 AGTCCAGTGCAAAAACGTGAG 59.329 47.619 0.00 0.00 0.00 3.51
618 4375 1.668751 GTCCAGTGCAAAAACGTGAGA 59.331 47.619 0.00 0.00 0.00 3.27
619 4376 1.939934 TCCAGTGCAAAAACGTGAGAG 59.060 47.619 0.00 0.00 0.00 3.20
620 4377 1.002468 CCAGTGCAAAAACGTGAGAGG 60.002 52.381 0.00 0.00 0.00 3.69
621 4378 1.670811 CAGTGCAAAAACGTGAGAGGT 59.329 47.619 0.00 0.00 0.00 3.85
622 4379 1.670811 AGTGCAAAAACGTGAGAGGTG 59.329 47.619 0.00 0.00 0.00 4.00
623 4380 1.668751 GTGCAAAAACGTGAGAGGTGA 59.331 47.619 0.00 0.00 0.00 4.02
624 4381 2.096819 GTGCAAAAACGTGAGAGGTGAA 59.903 45.455 0.00 0.00 0.00 3.18
625 4382 2.096819 TGCAAAAACGTGAGAGGTGAAC 59.903 45.455 0.00 0.00 0.00 3.18
626 4383 2.354821 GCAAAAACGTGAGAGGTGAACT 59.645 45.455 0.00 0.00 0.00 3.01
627 4384 3.558418 GCAAAAACGTGAGAGGTGAACTA 59.442 43.478 0.00 0.00 0.00 2.24
628 4385 4.213482 GCAAAAACGTGAGAGGTGAACTAT 59.787 41.667 0.00 0.00 0.00 2.12
629 4386 5.407387 GCAAAAACGTGAGAGGTGAACTATA 59.593 40.000 0.00 0.00 0.00 1.31
630 4387 6.401153 GCAAAAACGTGAGAGGTGAACTATAG 60.401 42.308 0.00 0.00 0.00 1.31
631 4388 5.979288 AAACGTGAGAGGTGAACTATAGT 57.021 39.130 0.00 0.00 0.00 2.12
632 4389 7.458409 AAAACGTGAGAGGTGAACTATAGTA 57.542 36.000 5.65 0.00 0.00 1.82
633 4390 6.680874 AACGTGAGAGGTGAACTATAGTAG 57.319 41.667 5.65 0.00 0.00 2.57
634 4391 5.124645 ACGTGAGAGGTGAACTATAGTAGG 58.875 45.833 5.65 0.00 0.00 3.18
635 4392 4.515944 CGTGAGAGGTGAACTATAGTAGGG 59.484 50.000 5.65 0.00 0.00 3.53
636 4393 5.686913 CGTGAGAGGTGAACTATAGTAGGGA 60.687 48.000 5.65 0.00 0.00 4.20
637 4394 6.127793 GTGAGAGGTGAACTATAGTAGGGAA 58.872 44.000 5.65 0.00 0.00 3.97
638 4395 6.606395 GTGAGAGGTGAACTATAGTAGGGAAA 59.394 42.308 5.65 0.00 0.00 3.13
639 4396 7.123847 GTGAGAGGTGAACTATAGTAGGGAAAA 59.876 40.741 5.65 0.00 0.00 2.29
640 4397 7.844779 TGAGAGGTGAACTATAGTAGGGAAAAT 59.155 37.037 5.65 0.00 0.00 1.82
641 4398 8.625467 AGAGGTGAACTATAGTAGGGAAAATT 57.375 34.615 5.65 0.00 0.00 1.82
642 4399 8.706521 AGAGGTGAACTATAGTAGGGAAAATTC 58.293 37.037 5.65 0.00 0.00 2.17
643 4400 8.388656 AGGTGAACTATAGTAGGGAAAATTCA 57.611 34.615 5.65 0.00 0.00 2.57
644 4401 8.832735 AGGTGAACTATAGTAGGGAAAATTCAA 58.167 33.333 5.65 0.00 0.00 2.69
645 4402 8.890718 GGTGAACTATAGTAGGGAAAATTCAAC 58.109 37.037 5.65 1.88 0.00 3.18
646 4403 8.601476 GTGAACTATAGTAGGGAAAATTCAACG 58.399 37.037 5.65 0.00 0.00 4.10
647 4404 7.767198 TGAACTATAGTAGGGAAAATTCAACGG 59.233 37.037 5.65 0.00 0.00 4.44
648 4405 6.053650 ACTATAGTAGGGAAAATTCAACGGC 58.946 40.000 2.75 0.00 0.00 5.68
649 4406 2.081462 AGTAGGGAAAATTCAACGGCG 58.919 47.619 4.80 4.80 0.00 6.46
650 4407 2.078392 GTAGGGAAAATTCAACGGCGA 58.922 47.619 16.62 0.00 0.00 5.54
651 4408 1.834188 AGGGAAAATTCAACGGCGAT 58.166 45.000 16.62 0.00 0.00 4.58
652 4409 2.993937 AGGGAAAATTCAACGGCGATA 58.006 42.857 16.62 0.00 0.00 2.92
653 4410 2.943033 AGGGAAAATTCAACGGCGATAG 59.057 45.455 16.62 2.29 0.00 2.08
654 4411 2.940410 GGGAAAATTCAACGGCGATAGA 59.060 45.455 16.62 5.11 39.76 1.98
655 4412 3.002348 GGGAAAATTCAACGGCGATAGAG 59.998 47.826 16.62 0.00 39.76 2.43
656 4413 3.869246 GGAAAATTCAACGGCGATAGAGA 59.131 43.478 16.62 0.17 39.76 3.10
657 4414 4.025647 GGAAAATTCAACGGCGATAGAGAG 60.026 45.833 16.62 0.00 39.76 3.20
658 4415 2.802787 ATTCAACGGCGATAGAGAGG 57.197 50.000 16.62 0.00 39.76 3.69
659 4416 1.758936 TTCAACGGCGATAGAGAGGA 58.241 50.000 16.62 0.00 39.76 3.71
660 4417 1.022735 TCAACGGCGATAGAGAGGAC 58.977 55.000 16.62 0.00 39.76 3.85
661 4418 0.317103 CAACGGCGATAGAGAGGACG 60.317 60.000 16.62 0.00 39.76 4.79
662 4419 1.445716 AACGGCGATAGAGAGGACGG 61.446 60.000 16.62 0.00 39.76 4.79
663 4420 2.618219 CGGCGATAGAGAGGACGGG 61.618 68.421 0.00 0.00 39.76 5.28
664 4421 2.646143 GCGATAGAGAGGACGGGC 59.354 66.667 0.00 0.00 39.76 6.13
665 4422 2.947542 CGATAGAGAGGACGGGCG 59.052 66.667 0.00 0.00 39.76 6.13
666 4423 2.646143 GATAGAGAGGACGGGCGC 59.354 66.667 0.00 0.00 0.00 6.53
667 4424 3.256716 GATAGAGAGGACGGGCGCG 62.257 68.421 22.69 22.69 0.00 6.86
685 4442 2.126071 CGTGCTCCTGGTACGTGG 60.126 66.667 0.00 0.00 46.19 4.94
686 4443 2.632544 CGTGCTCCTGGTACGTGGA 61.633 63.158 0.00 0.00 46.19 4.02
687 4444 1.080025 GTGCTCCTGGTACGTGGAC 60.080 63.158 0.00 0.00 30.94 4.02
688 4445 2.280552 TGCTCCTGGTACGTGGACC 61.281 63.158 0.00 0.00 40.21 4.46
695 4452 2.234896 TGGTACGTGGACCAATAGGA 57.765 50.000 7.75 0.00 46.70 2.94
696 4453 1.826720 TGGTACGTGGACCAATAGGAC 59.173 52.381 7.75 0.00 46.70 3.85
697 4454 1.826720 GGTACGTGGACCAATAGGACA 59.173 52.381 0.00 0.00 39.51 4.02
698 4455 2.159142 GGTACGTGGACCAATAGGACAG 60.159 54.545 0.00 0.00 39.51 3.51
699 4456 0.902531 ACGTGGACCAATAGGACAGG 59.097 55.000 0.00 0.00 38.69 4.00
700 4457 1.191535 CGTGGACCAATAGGACAGGA 58.808 55.000 0.00 0.00 38.69 3.86
701 4458 1.134788 CGTGGACCAATAGGACAGGAC 60.135 57.143 0.00 0.00 38.69 3.85
702 4459 1.209747 GTGGACCAATAGGACAGGACC 59.790 57.143 0.00 0.00 38.69 4.46
703 4460 0.464452 GGACCAATAGGACAGGACCG 59.536 60.000 0.00 0.00 38.69 4.79
704 4461 1.481871 GACCAATAGGACAGGACCGA 58.518 55.000 0.00 0.00 38.69 4.69
705 4462 1.829222 GACCAATAGGACAGGACCGAA 59.171 52.381 0.00 0.00 38.69 4.30
706 4463 2.235402 GACCAATAGGACAGGACCGAAA 59.765 50.000 0.00 0.00 38.69 3.46
707 4464 2.027469 ACCAATAGGACAGGACCGAAAC 60.027 50.000 0.00 0.00 38.69 2.78
708 4465 2.027561 CCAATAGGACAGGACCGAAACA 60.028 50.000 0.00 0.00 36.89 2.83
709 4466 3.558321 CCAATAGGACAGGACCGAAACAA 60.558 47.826 0.00 0.00 36.89 2.83
1097 4856 4.558226 TCCTGTGGACGTACTTACTCTA 57.442 45.455 0.00 0.00 0.00 2.43
1330 5091 3.551863 GGCCGATTCACAACAATCAACAA 60.552 43.478 0.00 0.00 32.99 2.83
1346 5107 3.493129 TCAACAAGAAAAGATGACCGTCG 59.507 43.478 0.00 0.00 0.00 5.12
1942 6504 2.050934 GGGGAGGCGTACGACTTCT 61.051 63.158 28.19 14.00 30.74 2.85
1943 6505 0.749454 GGGGAGGCGTACGACTTCTA 60.749 60.000 28.19 0.00 30.74 2.10
1944 6506 1.316651 GGGAGGCGTACGACTTCTAT 58.683 55.000 28.19 4.11 30.74 1.98
1945 6507 2.498167 GGGAGGCGTACGACTTCTATA 58.502 52.381 28.19 0.00 30.74 1.31
1946 6508 2.880890 GGGAGGCGTACGACTTCTATAA 59.119 50.000 28.19 0.00 30.74 0.98
1947 6509 3.304324 GGGAGGCGTACGACTTCTATAAC 60.304 52.174 28.19 12.09 30.74 1.89
1948 6510 3.304324 GGAGGCGTACGACTTCTATAACC 60.304 52.174 27.20 16.08 30.74 2.85
1949 6511 3.549794 AGGCGTACGACTTCTATAACCT 58.450 45.455 20.37 7.91 0.00 3.50
1950 6512 4.708177 AGGCGTACGACTTCTATAACCTA 58.292 43.478 20.37 0.00 0.00 3.08
2171 6733 4.321452 CCCATGCACATATGAAGGCAATAC 60.321 45.833 19.54 0.00 40.02 1.89
2190 6752 6.470235 GCAATACATGAGGTTTCTTTTCGATG 59.530 38.462 0.00 0.00 0.00 3.84
2234 6796 4.959596 AGAGCGACGAACAAAGATAGTA 57.040 40.909 0.00 0.00 0.00 1.82
2235 6797 4.660105 AGAGCGACGAACAAAGATAGTAC 58.340 43.478 0.00 0.00 0.00 2.73
2236 6798 3.423571 AGCGACGAACAAAGATAGTACG 58.576 45.455 0.00 0.00 0.00 3.67
2237 6799 2.529090 GCGACGAACAAAGATAGTACGG 59.471 50.000 0.00 0.00 0.00 4.02
2238 6800 2.529090 CGACGAACAAAGATAGTACGGC 59.471 50.000 0.00 0.00 0.00 5.68
2239 6801 3.504863 GACGAACAAAGATAGTACGGCA 58.495 45.455 0.00 0.00 0.00 5.69
2240 6802 3.916761 ACGAACAAAGATAGTACGGCAA 58.083 40.909 0.00 0.00 0.00 4.52
2241 6803 4.309099 ACGAACAAAGATAGTACGGCAAA 58.691 39.130 0.00 0.00 0.00 3.68
2242 6804 4.933400 ACGAACAAAGATAGTACGGCAAAT 59.067 37.500 0.00 0.00 0.00 2.32
2243 6805 6.101332 ACGAACAAAGATAGTACGGCAAATA 58.899 36.000 0.00 0.00 0.00 1.40
2244 6806 6.759827 ACGAACAAAGATAGTACGGCAAATAT 59.240 34.615 0.00 0.00 0.00 1.28
2245 6807 7.279313 ACGAACAAAGATAGTACGGCAAATATT 59.721 33.333 0.00 0.00 0.00 1.28
2246 6808 8.757789 CGAACAAAGATAGTACGGCAAATATTA 58.242 33.333 0.00 0.00 0.00 0.98
2248 6810 8.603242 ACAAAGATAGTACGGCAAATATTAGG 57.397 34.615 0.00 0.00 0.00 2.69
2249 6811 7.172703 ACAAAGATAGTACGGCAAATATTAGGC 59.827 37.037 3.96 3.96 0.00 3.93
2254 6816 0.951558 CGGCAAATATTAGGCGCCTT 59.048 50.000 37.74 21.30 46.46 4.35
2522 7087 3.657038 TAGGCGCCTCCTCGGTCTT 62.657 63.158 36.73 7.63 43.20 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 8.774586 GCATCTGGTAAATCGATTTAGTATTGT 58.225 33.333 26.80 11.71 33.31 2.71
37 38 8.230486 GGCATCTGGTAAATCGATTTAGTATTG 58.770 37.037 26.80 20.39 33.31 1.90
38 39 8.157476 AGGCATCTGGTAAATCGATTTAGTATT 58.843 33.333 26.80 11.26 33.31 1.89
39 40 7.604164 CAGGCATCTGGTAAATCGATTTAGTAT 59.396 37.037 26.80 15.98 37.36 2.12
40 41 6.929049 CAGGCATCTGGTAAATCGATTTAGTA 59.071 38.462 26.80 18.25 37.36 1.82
41 42 5.760253 CAGGCATCTGGTAAATCGATTTAGT 59.240 40.000 26.80 8.32 37.36 2.24
42 43 6.233430 CAGGCATCTGGTAAATCGATTTAG 57.767 41.667 26.80 18.76 37.36 1.85
56 57 2.094390 CACCATCAAAACCAGGCATCTG 60.094 50.000 0.00 0.00 40.59 2.90
57 58 2.173519 CACCATCAAAACCAGGCATCT 58.826 47.619 0.00 0.00 0.00 2.90
58 59 1.895131 ACACCATCAAAACCAGGCATC 59.105 47.619 0.00 0.00 0.00 3.91
59 60 2.014010 ACACCATCAAAACCAGGCAT 57.986 45.000 0.00 0.00 0.00 4.40
60 61 1.786937 AACACCATCAAAACCAGGCA 58.213 45.000 0.00 0.00 0.00 4.75
61 62 4.021544 TGATTAACACCATCAAAACCAGGC 60.022 41.667 0.00 0.00 0.00 4.85
62 63 5.469479 GTGATTAACACCATCAAAACCAGG 58.531 41.667 0.00 0.00 43.05 4.45
63 64 5.153513 CGTGATTAACACCATCAAAACCAG 58.846 41.667 0.00 0.00 45.73 4.00
64 65 4.580995 ACGTGATTAACACCATCAAAACCA 59.419 37.500 0.00 0.00 45.73 3.67
65 66 5.116069 ACGTGATTAACACCATCAAAACC 57.884 39.130 0.00 0.00 45.73 3.27
66 67 4.843984 CGACGTGATTAACACCATCAAAAC 59.156 41.667 0.00 0.00 45.73 2.43
67 68 4.750598 TCGACGTGATTAACACCATCAAAA 59.249 37.500 0.00 0.00 45.73 2.44
68 69 4.150980 GTCGACGTGATTAACACCATCAAA 59.849 41.667 0.00 0.00 45.73 2.69
69 70 3.676172 GTCGACGTGATTAACACCATCAA 59.324 43.478 0.00 0.00 45.73 2.57
70 71 3.247442 GTCGACGTGATTAACACCATCA 58.753 45.455 0.00 0.00 45.73 3.07
71 72 3.060363 GTGTCGACGTGATTAACACCATC 59.940 47.826 11.62 0.00 45.73 3.51
72 73 2.991190 GTGTCGACGTGATTAACACCAT 59.009 45.455 11.62 0.00 45.73 3.55
73 74 2.034939 AGTGTCGACGTGATTAACACCA 59.965 45.455 11.62 0.00 45.73 4.17
74 75 2.669364 AGTGTCGACGTGATTAACACC 58.331 47.619 11.62 0.00 45.73 4.16
75 76 6.744537 AGTAATAGTGTCGACGTGATTAACAC 59.255 38.462 11.62 7.04 45.11 3.32
76 77 6.744082 CAGTAATAGTGTCGACGTGATTAACA 59.256 38.462 11.62 0.00 0.00 2.41
77 78 6.195983 CCAGTAATAGTGTCGACGTGATTAAC 59.804 42.308 11.62 1.19 0.00 2.01
78 79 6.093909 TCCAGTAATAGTGTCGACGTGATTAA 59.906 38.462 11.62 0.00 0.00 1.40
79 80 5.585844 TCCAGTAATAGTGTCGACGTGATTA 59.414 40.000 11.62 10.75 0.00 1.75
80 81 4.397103 TCCAGTAATAGTGTCGACGTGATT 59.603 41.667 11.62 11.70 0.00 2.57
81 82 3.943381 TCCAGTAATAGTGTCGACGTGAT 59.057 43.478 11.62 0.37 0.00 3.06
82 83 3.337358 TCCAGTAATAGTGTCGACGTGA 58.663 45.455 11.62 0.00 0.00 4.35
83 84 3.752412 TCCAGTAATAGTGTCGACGTG 57.248 47.619 11.62 0.00 0.00 4.49
84 85 4.771590 TTTCCAGTAATAGTGTCGACGT 57.228 40.909 11.62 3.06 0.00 4.34
85 86 5.337554 TCATTTCCAGTAATAGTGTCGACG 58.662 41.667 11.62 0.00 0.00 5.12
86 87 7.772332 AATCATTTCCAGTAATAGTGTCGAC 57.228 36.000 9.11 9.11 0.00 4.20
112 113 9.511272 GTAGACCCTTGACTTAATAAAAAGGAA 57.489 33.333 9.22 0.00 39.88 3.36
113 114 8.887393 AGTAGACCCTTGACTTAATAAAAAGGA 58.113 33.333 9.22 0.00 39.88 3.36
114 115 9.163899 GAGTAGACCCTTGACTTAATAAAAAGG 57.836 37.037 0.00 0.00 37.69 3.11
115 116 9.163899 GGAGTAGACCCTTGACTTAATAAAAAG 57.836 37.037 0.00 0.00 0.00 2.27
116 117 8.662255 TGGAGTAGACCCTTGACTTAATAAAAA 58.338 33.333 0.00 0.00 0.00 1.94
117 118 8.209802 TGGAGTAGACCCTTGACTTAATAAAA 57.790 34.615 0.00 0.00 0.00 1.52
118 119 7.580882 GCTGGAGTAGACCCTTGACTTAATAAA 60.581 40.741 0.00 0.00 0.00 1.40
119 120 6.127140 GCTGGAGTAGACCCTTGACTTAATAA 60.127 42.308 0.00 0.00 0.00 1.40
120 121 5.363005 GCTGGAGTAGACCCTTGACTTAATA 59.637 44.000 0.00 0.00 0.00 0.98
121 122 4.162509 GCTGGAGTAGACCCTTGACTTAAT 59.837 45.833 0.00 0.00 0.00 1.40
122 123 3.514309 GCTGGAGTAGACCCTTGACTTAA 59.486 47.826 0.00 0.00 0.00 1.85
123 124 3.097614 GCTGGAGTAGACCCTTGACTTA 58.902 50.000 0.00 0.00 0.00 2.24
124 125 1.903183 GCTGGAGTAGACCCTTGACTT 59.097 52.381 0.00 0.00 0.00 3.01
125 126 1.077993 AGCTGGAGTAGACCCTTGACT 59.922 52.381 0.00 0.00 0.00 3.41
126 127 1.562783 AGCTGGAGTAGACCCTTGAC 58.437 55.000 0.00 0.00 0.00 3.18
127 128 2.180276 GAAGCTGGAGTAGACCCTTGA 58.820 52.381 0.00 0.00 0.00 3.02
128 129 1.902508 TGAAGCTGGAGTAGACCCTTG 59.097 52.381 0.00 0.00 0.00 3.61
129 130 2.327325 TGAAGCTGGAGTAGACCCTT 57.673 50.000 0.00 0.00 0.00 3.95
130 131 2.393646 GATGAAGCTGGAGTAGACCCT 58.606 52.381 0.00 0.00 0.00 4.34
131 132 1.414550 GGATGAAGCTGGAGTAGACCC 59.585 57.143 0.00 0.00 0.00 4.46
132 133 2.111384 TGGATGAAGCTGGAGTAGACC 58.889 52.381 0.00 0.00 0.00 3.85
133 134 2.763448 AGTGGATGAAGCTGGAGTAGAC 59.237 50.000 0.00 0.00 0.00 2.59
134 135 3.107402 AGTGGATGAAGCTGGAGTAGA 57.893 47.619 0.00 0.00 0.00 2.59
135 136 3.068873 GGTAGTGGATGAAGCTGGAGTAG 59.931 52.174 0.00 0.00 0.00 2.57
136 137 3.031736 GGTAGTGGATGAAGCTGGAGTA 58.968 50.000 0.00 0.00 0.00 2.59
137 138 1.834263 GGTAGTGGATGAAGCTGGAGT 59.166 52.381 0.00 0.00 0.00 3.85
138 139 1.833630 TGGTAGTGGATGAAGCTGGAG 59.166 52.381 0.00 0.00 0.00 3.86
139 140 1.951209 TGGTAGTGGATGAAGCTGGA 58.049 50.000 0.00 0.00 0.00 3.86
140 141 2.787473 TTGGTAGTGGATGAAGCTGG 57.213 50.000 0.00 0.00 0.00 4.85
141 142 5.649782 AATTTTGGTAGTGGATGAAGCTG 57.350 39.130 0.00 0.00 0.00 4.24
142 143 7.669722 TCTTAAATTTTGGTAGTGGATGAAGCT 59.330 33.333 0.00 0.00 0.00 3.74
143 144 7.826690 TCTTAAATTTTGGTAGTGGATGAAGC 58.173 34.615 0.00 0.00 0.00 3.86
144 145 9.014297 ACTCTTAAATTTTGGTAGTGGATGAAG 57.986 33.333 0.00 0.00 0.00 3.02
145 146 8.934023 ACTCTTAAATTTTGGTAGTGGATGAA 57.066 30.769 0.00 0.00 0.00 2.57
146 147 8.934023 AACTCTTAAATTTTGGTAGTGGATGA 57.066 30.769 0.00 0.00 0.00 2.92
147 148 9.981114 AAAACTCTTAAATTTTGGTAGTGGATG 57.019 29.630 0.00 0.00 0.00 3.51
172 173 6.014327 AGGTTGGTATGTCGGTAGAGTAAAAA 60.014 38.462 0.00 0.00 0.00 1.94
173 174 5.481473 AGGTTGGTATGTCGGTAGAGTAAAA 59.519 40.000 0.00 0.00 0.00 1.52
174 175 5.018809 AGGTTGGTATGTCGGTAGAGTAAA 58.981 41.667 0.00 0.00 0.00 2.01
175 176 4.603131 AGGTTGGTATGTCGGTAGAGTAA 58.397 43.478 0.00 0.00 0.00 2.24
176 177 4.240881 AGGTTGGTATGTCGGTAGAGTA 57.759 45.455 0.00 0.00 0.00 2.59
177 178 3.097342 AGGTTGGTATGTCGGTAGAGT 57.903 47.619 0.00 0.00 0.00 3.24
178 179 4.499357 GCTTAGGTTGGTATGTCGGTAGAG 60.499 50.000 0.00 0.00 0.00 2.43
179 180 3.382546 GCTTAGGTTGGTATGTCGGTAGA 59.617 47.826 0.00 0.00 0.00 2.59
180 181 3.131577 TGCTTAGGTTGGTATGTCGGTAG 59.868 47.826 0.00 0.00 0.00 3.18
181 182 3.098377 TGCTTAGGTTGGTATGTCGGTA 58.902 45.455 0.00 0.00 0.00 4.02
182 183 1.903860 TGCTTAGGTTGGTATGTCGGT 59.096 47.619 0.00 0.00 0.00 4.69
183 184 2.684001 TGCTTAGGTTGGTATGTCGG 57.316 50.000 0.00 0.00 0.00 4.79
184 185 5.560966 AAATTGCTTAGGTTGGTATGTCG 57.439 39.130 0.00 0.00 0.00 4.35
185 186 8.276252 TCTTAAATTGCTTAGGTTGGTATGTC 57.724 34.615 0.00 0.00 0.00 3.06
186 187 7.339466 CCTCTTAAATTGCTTAGGTTGGTATGT 59.661 37.037 0.00 0.00 0.00 2.29
187 188 7.339466 ACCTCTTAAATTGCTTAGGTTGGTATG 59.661 37.037 0.00 0.00 33.59 2.39
188 189 7.410991 ACCTCTTAAATTGCTTAGGTTGGTAT 58.589 34.615 0.00 0.00 33.59 2.73
189 190 6.786122 ACCTCTTAAATTGCTTAGGTTGGTA 58.214 36.000 0.00 0.00 33.59 3.25
190 191 5.641155 ACCTCTTAAATTGCTTAGGTTGGT 58.359 37.500 0.00 0.00 33.59 3.67
191 192 6.590234 AACCTCTTAAATTGCTTAGGTTGG 57.410 37.500 12.35 0.00 43.77 3.77
243 244 8.669571 CCTCCATCCCTTCCTCTTATAAATTAA 58.330 37.037 0.00 0.00 0.00 1.40
244 245 7.239773 CCCTCCATCCCTTCCTCTTATAAATTA 59.760 40.741 0.00 0.00 0.00 1.40
245 246 6.046049 CCCTCCATCCCTTCCTCTTATAAATT 59.954 42.308 0.00 0.00 0.00 1.82
246 247 5.553557 CCCTCCATCCCTTCCTCTTATAAAT 59.446 44.000 0.00 0.00 0.00 1.40
247 248 4.913968 CCCTCCATCCCTTCCTCTTATAAA 59.086 45.833 0.00 0.00 0.00 1.40
248 249 4.174051 TCCCTCCATCCCTTCCTCTTATAA 59.826 45.833 0.00 0.00 0.00 0.98
249 250 3.738158 TCCCTCCATCCCTTCCTCTTATA 59.262 47.826 0.00 0.00 0.00 0.98
250 251 2.528813 TCCCTCCATCCCTTCCTCTTAT 59.471 50.000 0.00 0.00 0.00 1.73
251 252 1.944588 TCCCTCCATCCCTTCCTCTTA 59.055 52.381 0.00 0.00 0.00 2.10
252 253 0.725133 TCCCTCCATCCCTTCCTCTT 59.275 55.000 0.00 0.00 0.00 2.85
253 254 0.267356 CTCCCTCCATCCCTTCCTCT 59.733 60.000 0.00 0.00 0.00 3.69
254 255 0.030603 ACTCCCTCCATCCCTTCCTC 60.031 60.000 0.00 0.00 0.00 3.71
255 256 0.423544 AACTCCCTCCATCCCTTCCT 59.576 55.000 0.00 0.00 0.00 3.36
256 257 0.548510 CAACTCCCTCCATCCCTTCC 59.451 60.000 0.00 0.00 0.00 3.46
257 258 0.548510 CCAACTCCCTCCATCCCTTC 59.451 60.000 0.00 0.00 0.00 3.46
258 259 0.921256 CCCAACTCCCTCCATCCCTT 60.921 60.000 0.00 0.00 0.00 3.95
259 260 1.308216 CCCAACTCCCTCCATCCCT 60.308 63.158 0.00 0.00 0.00 4.20
260 261 2.386935 CCCCAACTCCCTCCATCCC 61.387 68.421 0.00 0.00 0.00 3.85
261 262 3.061905 GCCCCAACTCCCTCCATCC 62.062 68.421 0.00 0.00 0.00 3.51
262 263 2.597903 GCCCCAACTCCCTCCATC 59.402 66.667 0.00 0.00 0.00 3.51
263 264 2.833151 TACGCCCCAACTCCCTCCAT 62.833 60.000 0.00 0.00 0.00 3.41
264 265 3.549433 TACGCCCCAACTCCCTCCA 62.549 63.158 0.00 0.00 0.00 3.86
265 266 2.686106 TACGCCCCAACTCCCTCC 60.686 66.667 0.00 0.00 0.00 4.30
266 267 2.582978 GTACGCCCCAACTCCCTC 59.417 66.667 0.00 0.00 0.00 4.30
267 268 3.007323 GGTACGCCCCAACTCCCT 61.007 66.667 0.00 0.00 0.00 4.20
268 269 2.206182 ATTGGTACGCCCCAACTCCC 62.206 60.000 8.41 0.00 46.80 4.30
269 270 1.029947 CATTGGTACGCCCCAACTCC 61.030 60.000 8.41 0.00 46.80 3.85
270 271 0.322187 ACATTGGTACGCCCCAACTC 60.322 55.000 8.41 0.00 46.80 3.01
271 272 0.985760 TACATTGGTACGCCCCAACT 59.014 50.000 8.41 0.89 46.80 3.16
272 273 1.089112 GTACATTGGTACGCCCCAAC 58.911 55.000 8.41 0.00 46.80 3.77
281 282 4.538490 AGAGTTGGGGATTGTACATTGGTA 59.462 41.667 0.00 0.00 0.00 3.25
282 283 3.333680 AGAGTTGGGGATTGTACATTGGT 59.666 43.478 0.00 0.00 0.00 3.67
283 284 3.947834 GAGAGTTGGGGATTGTACATTGG 59.052 47.826 0.00 0.00 0.00 3.16
284 285 3.947834 GGAGAGTTGGGGATTGTACATTG 59.052 47.826 0.00 0.00 0.00 2.82
285 286 3.852578 AGGAGAGTTGGGGATTGTACATT 59.147 43.478 0.00 0.00 0.00 2.71
286 287 3.464828 AGGAGAGTTGGGGATTGTACAT 58.535 45.455 0.00 0.00 0.00 2.29
287 288 2.915869 AGGAGAGTTGGGGATTGTACA 58.084 47.619 0.00 0.00 0.00 2.90
288 289 4.302559 AAAGGAGAGTTGGGGATTGTAC 57.697 45.455 0.00 0.00 0.00 2.90
289 290 6.652205 ATTAAAGGAGAGTTGGGGATTGTA 57.348 37.500 0.00 0.00 0.00 2.41
290 291 5.536497 ATTAAAGGAGAGTTGGGGATTGT 57.464 39.130 0.00 0.00 0.00 2.71
291 292 6.663734 AGTATTAAAGGAGAGTTGGGGATTG 58.336 40.000 0.00 0.00 0.00 2.67
292 293 6.910259 AGTATTAAAGGAGAGTTGGGGATT 57.090 37.500 0.00 0.00 0.00 3.01
293 294 6.910259 AAGTATTAAAGGAGAGTTGGGGAT 57.090 37.500 0.00 0.00 0.00 3.85
294 295 6.964086 AGTAAGTATTAAAGGAGAGTTGGGGA 59.036 38.462 0.00 0.00 28.70 4.81
295 296 7.196637 AGTAAGTATTAAAGGAGAGTTGGGG 57.803 40.000 0.00 0.00 28.70 4.96
296 297 7.927092 GCTAGTAAGTATTAAAGGAGAGTTGGG 59.073 40.741 0.00 0.00 28.70 4.12
297 298 8.475639 TGCTAGTAAGTATTAAAGGAGAGTTGG 58.524 37.037 0.00 0.00 28.70 3.77
298 299 9.871238 TTGCTAGTAAGTATTAAAGGAGAGTTG 57.129 33.333 0.00 0.00 28.70 3.16
301 302 9.535878 CCTTTGCTAGTAAGTATTAAAGGAGAG 57.464 37.037 0.00 0.00 43.18 3.20
302 303 9.043548 ACCTTTGCTAGTAAGTATTAAAGGAGA 57.956 33.333 16.96 0.00 43.18 3.71
303 304 9.099454 CACCTTTGCTAGTAAGTATTAAAGGAG 57.901 37.037 16.96 7.62 43.18 3.69
304 305 7.551617 GCACCTTTGCTAGTAAGTATTAAAGGA 59.448 37.037 16.96 0.00 46.17 3.36
305 306 7.694886 GCACCTTTGCTAGTAAGTATTAAAGG 58.305 38.462 0.00 0.00 46.17 3.11
374 375 5.456548 ACATTGCATGATGTGTTCTTTGA 57.543 34.783 3.20 0.00 38.75 2.69
443 444 1.354040 CTTGCGCACTCGAGAAATCT 58.646 50.000 21.68 0.00 38.10 2.40
450 451 4.639171 TGTCGCTTGCGCACTCGA 62.639 61.111 23.76 23.76 38.10 4.04
451 452 4.415501 GTGTCGCTTGCGCACTCG 62.416 66.667 23.87 17.24 35.30 4.18
493 508 4.730042 CGTGTGAACTCAAATTTCTGTGTG 59.270 41.667 0.00 0.00 0.00 3.82
533 4288 2.094390 CACTTCACTCATGGGCAATTGG 60.094 50.000 7.72 0.00 0.00 3.16
544 4299 1.871039 GCCGCTTAAACACTTCACTCA 59.129 47.619 0.00 0.00 0.00 3.41
556 4311 2.542597 ACGATACGATTTGCCGCTTAA 58.457 42.857 0.00 0.00 0.00 1.85
605 4362 2.354821 AGTTCACCTCTCACGTTTTTGC 59.645 45.455 0.00 0.00 0.00 3.68
606 4363 5.924475 ATAGTTCACCTCTCACGTTTTTG 57.076 39.130 0.00 0.00 0.00 2.44
607 4364 6.756221 ACTATAGTTCACCTCTCACGTTTTT 58.244 36.000 0.00 0.00 0.00 1.94
608 4365 6.342338 ACTATAGTTCACCTCTCACGTTTT 57.658 37.500 0.00 0.00 0.00 2.43
609 4366 5.979288 ACTATAGTTCACCTCTCACGTTT 57.021 39.130 0.00 0.00 0.00 3.60
610 4367 5.589452 CCTACTATAGTTCACCTCTCACGTT 59.411 44.000 11.40 0.00 0.00 3.99
611 4368 5.124645 CCTACTATAGTTCACCTCTCACGT 58.875 45.833 11.40 0.00 0.00 4.49
612 4369 4.515944 CCCTACTATAGTTCACCTCTCACG 59.484 50.000 11.40 0.00 0.00 4.35
613 4370 5.692928 TCCCTACTATAGTTCACCTCTCAC 58.307 45.833 11.40 0.00 0.00 3.51
614 4371 5.988865 TCCCTACTATAGTTCACCTCTCA 57.011 43.478 11.40 0.00 0.00 3.27
615 4372 7.657023 TTTTCCCTACTATAGTTCACCTCTC 57.343 40.000 11.40 0.00 0.00 3.20
616 4373 8.625467 AATTTTCCCTACTATAGTTCACCTCT 57.375 34.615 11.40 0.00 0.00 3.69
617 4374 8.483758 TGAATTTTCCCTACTATAGTTCACCTC 58.516 37.037 11.40 0.00 0.00 3.85
618 4375 8.388656 TGAATTTTCCCTACTATAGTTCACCT 57.611 34.615 11.40 0.00 0.00 4.00
619 4376 8.890718 GTTGAATTTTCCCTACTATAGTTCACC 58.109 37.037 11.40 0.00 0.00 4.02
620 4377 8.601476 CGTTGAATTTTCCCTACTATAGTTCAC 58.399 37.037 11.40 0.74 0.00 3.18
621 4378 7.767198 CCGTTGAATTTTCCCTACTATAGTTCA 59.233 37.037 11.40 2.40 0.00 3.18
622 4379 7.254692 GCCGTTGAATTTTCCCTACTATAGTTC 60.255 40.741 11.40 0.00 0.00 3.01
623 4380 6.541278 GCCGTTGAATTTTCCCTACTATAGTT 59.459 38.462 11.40 0.00 0.00 2.24
624 4381 6.053650 GCCGTTGAATTTTCCCTACTATAGT 58.946 40.000 10.87 10.87 0.00 2.12
625 4382 5.176958 CGCCGTTGAATTTTCCCTACTATAG 59.823 44.000 0.00 0.00 0.00 1.31
626 4383 5.051816 CGCCGTTGAATTTTCCCTACTATA 58.948 41.667 0.00 0.00 0.00 1.31
627 4384 3.875134 CGCCGTTGAATTTTCCCTACTAT 59.125 43.478 0.00 0.00 0.00 2.12
628 4385 3.055963 TCGCCGTTGAATTTTCCCTACTA 60.056 43.478 0.00 0.00 0.00 1.82
629 4386 2.081462 CGCCGTTGAATTTTCCCTACT 58.919 47.619 0.00 0.00 0.00 2.57
630 4387 2.078392 TCGCCGTTGAATTTTCCCTAC 58.922 47.619 0.00 0.00 0.00 3.18
631 4388 2.476126 TCGCCGTTGAATTTTCCCTA 57.524 45.000 0.00 0.00 0.00 3.53
632 4389 1.834188 ATCGCCGTTGAATTTTCCCT 58.166 45.000 0.00 0.00 0.00 4.20
633 4390 2.940410 TCTATCGCCGTTGAATTTTCCC 59.060 45.455 0.00 0.00 0.00 3.97
634 4391 3.869246 TCTCTATCGCCGTTGAATTTTCC 59.131 43.478 0.00 0.00 0.00 3.13
635 4392 4.025647 CCTCTCTATCGCCGTTGAATTTTC 60.026 45.833 0.00 0.00 0.00 2.29
636 4393 3.871594 CCTCTCTATCGCCGTTGAATTTT 59.128 43.478 0.00 0.00 0.00 1.82
637 4394 3.132289 TCCTCTCTATCGCCGTTGAATTT 59.868 43.478 0.00 0.00 0.00 1.82
638 4395 2.693591 TCCTCTCTATCGCCGTTGAATT 59.306 45.455 0.00 0.00 0.00 2.17
639 4396 2.034812 GTCCTCTCTATCGCCGTTGAAT 59.965 50.000 0.00 0.00 0.00 2.57
640 4397 1.404391 GTCCTCTCTATCGCCGTTGAA 59.596 52.381 0.00 0.00 0.00 2.69
641 4398 1.022735 GTCCTCTCTATCGCCGTTGA 58.977 55.000 0.00 0.00 0.00 3.18
642 4399 0.317103 CGTCCTCTCTATCGCCGTTG 60.317 60.000 0.00 0.00 0.00 4.10
643 4400 1.445716 CCGTCCTCTCTATCGCCGTT 61.446 60.000 0.00 0.00 0.00 4.44
644 4401 1.892862 CCGTCCTCTCTATCGCCGT 60.893 63.158 0.00 0.00 0.00 5.68
645 4402 2.618219 CCCGTCCTCTCTATCGCCG 61.618 68.421 0.00 0.00 0.00 6.46
646 4403 2.921797 GCCCGTCCTCTCTATCGCC 61.922 68.421 0.00 0.00 0.00 5.54
647 4404 2.646143 GCCCGTCCTCTCTATCGC 59.354 66.667 0.00 0.00 0.00 4.58
648 4405 2.947542 CGCCCGTCCTCTCTATCG 59.052 66.667 0.00 0.00 0.00 2.92
649 4406 2.646143 GCGCCCGTCCTCTCTATC 59.354 66.667 0.00 0.00 0.00 2.08
650 4407 3.288290 CGCGCCCGTCCTCTCTAT 61.288 66.667 0.00 0.00 0.00 1.98
666 4423 4.415332 ACGTACCAGGAGCACGCG 62.415 66.667 3.53 3.53 39.23 6.01
667 4424 2.809601 CACGTACCAGGAGCACGC 60.810 66.667 11.36 0.00 39.23 5.34
668 4425 2.126071 CCACGTACCAGGAGCACG 60.126 66.667 10.26 10.26 41.32 5.34
669 4426 1.080025 GTCCACGTACCAGGAGCAC 60.080 63.158 0.00 0.00 33.85 4.40
670 4427 3.373226 GTCCACGTACCAGGAGCA 58.627 61.111 0.00 0.00 33.85 4.26
671 4428 2.577593 GGTCCACGTACCAGGAGC 59.422 66.667 12.86 12.86 44.14 4.70
672 4429 4.107029 TGGTCCACGTACCAGGAG 57.893 61.111 6.08 0.00 44.68 3.69
677 4434 1.826720 TGTCCTATTGGTCCACGTACC 59.173 52.381 0.20 0.20 40.19 3.34
678 4435 2.159142 CCTGTCCTATTGGTCCACGTAC 60.159 54.545 0.00 0.00 34.23 3.67
679 4436 2.104967 CCTGTCCTATTGGTCCACGTA 58.895 52.381 0.00 0.00 34.23 3.57
680 4437 0.902531 CCTGTCCTATTGGTCCACGT 59.097 55.000 0.00 0.00 34.23 4.49
681 4438 1.134788 GTCCTGTCCTATTGGTCCACG 60.135 57.143 0.00 0.00 34.23 4.94
682 4439 1.209747 GGTCCTGTCCTATTGGTCCAC 59.790 57.143 0.00 0.00 34.23 4.02
683 4440 1.580059 GGTCCTGTCCTATTGGTCCA 58.420 55.000 0.00 0.00 34.23 4.02
684 4441 0.464452 CGGTCCTGTCCTATTGGTCC 59.536 60.000 0.00 0.00 34.23 4.46
685 4442 1.481871 TCGGTCCTGTCCTATTGGTC 58.518 55.000 0.00 0.00 34.23 4.02
686 4443 1.946984 TTCGGTCCTGTCCTATTGGT 58.053 50.000 0.00 0.00 34.23 3.67
687 4444 2.027561 TGTTTCGGTCCTGTCCTATTGG 60.028 50.000 0.00 0.00 0.00 3.16
688 4445 3.328382 TGTTTCGGTCCTGTCCTATTG 57.672 47.619 0.00 0.00 0.00 1.90
689 4446 4.261801 CATTGTTTCGGTCCTGTCCTATT 58.738 43.478 0.00 0.00 0.00 1.73
690 4447 3.370527 CCATTGTTTCGGTCCTGTCCTAT 60.371 47.826 0.00 0.00 0.00 2.57
691 4448 2.027561 CCATTGTTTCGGTCCTGTCCTA 60.028 50.000 0.00 0.00 0.00 2.94
692 4449 1.271379 CCATTGTTTCGGTCCTGTCCT 60.271 52.381 0.00 0.00 0.00 3.85
693 4450 1.165270 CCATTGTTTCGGTCCTGTCC 58.835 55.000 0.00 0.00 0.00 4.02
694 4451 1.165270 CCCATTGTTTCGGTCCTGTC 58.835 55.000 0.00 0.00 0.00 3.51
695 4452 0.893727 GCCCATTGTTTCGGTCCTGT 60.894 55.000 0.00 0.00 0.00 4.00
696 4453 1.595093 GGCCCATTGTTTCGGTCCTG 61.595 60.000 0.00 0.00 0.00 3.86
697 4454 1.304134 GGCCCATTGTTTCGGTCCT 60.304 57.895 0.00 0.00 0.00 3.85
698 4455 1.304134 AGGCCCATTGTTTCGGTCC 60.304 57.895 0.00 0.00 0.00 4.46
699 4456 0.322546 AGAGGCCCATTGTTTCGGTC 60.323 55.000 0.00 0.00 0.00 4.79
700 4457 0.112412 AAGAGGCCCATTGTTTCGGT 59.888 50.000 0.00 0.00 0.00 4.69
701 4458 0.811281 GAAGAGGCCCATTGTTTCGG 59.189 55.000 0.00 0.00 0.00 4.30
702 4459 0.811281 GGAAGAGGCCCATTGTTTCG 59.189 55.000 0.00 0.00 0.00 3.46
703 4460 0.811281 CGGAAGAGGCCCATTGTTTC 59.189 55.000 0.00 0.00 0.00 2.78
704 4461 0.611896 CCGGAAGAGGCCCATTGTTT 60.612 55.000 0.00 0.00 0.00 2.83
705 4462 1.000896 CCGGAAGAGGCCCATTGTT 60.001 57.895 0.00 0.00 0.00 2.83
706 4463 2.677228 CCGGAAGAGGCCCATTGT 59.323 61.111 0.00 0.00 0.00 2.71
707 4464 2.124151 CCCGGAAGAGGCCCATTG 60.124 66.667 0.73 0.00 0.00 2.82
708 4465 2.614013 ACCCGGAAGAGGCCCATT 60.614 61.111 0.73 0.00 0.00 3.16
709 4466 3.411517 CACCCGGAAGAGGCCCAT 61.412 66.667 0.73 0.00 0.00 4.00
785 4542 3.908951 CATGCGCCGTCGTTACCG 61.909 66.667 4.18 0.00 38.14 4.02
1097 4856 3.568007 TGAGTAGTTGCCGCAAAAGATTT 59.432 39.130 7.54 0.00 0.00 2.17
1330 5091 0.391263 GCCCGACGGTCATCTTTTCT 60.391 55.000 13.94 0.00 0.00 2.52
1353 5114 2.368311 GGTACCTTTTTGTCCACCCA 57.632 50.000 4.06 0.00 0.00 4.51
1401 5162 4.706035 TGTTTCGGCCTACTTGTTTTCTA 58.294 39.130 0.00 0.00 0.00 2.10
1945 6507 9.551339 TTCCCACGAATATAGGTTATATAGGTT 57.449 33.333 0.00 0.00 31.37 3.50
1946 6508 9.551339 TTTCCCACGAATATAGGTTATATAGGT 57.449 33.333 0.00 0.00 31.37 3.08
1950 6512 9.681062 CCAATTTCCCACGAATATAGGTTATAT 57.319 33.333 0.00 0.00 32.90 0.86
2171 6733 4.937620 TCTCCATCGAAAAGAAACCTCATG 59.062 41.667 0.00 0.00 0.00 3.07
2190 6752 5.392767 TCATAGTTATCATTCGCCTCTCC 57.607 43.478 0.00 0.00 0.00 3.71
2234 6796 2.327228 GGCGCCTAATATTTGCCGT 58.673 52.632 22.15 0.00 35.77 5.68
2236 6798 2.226674 GAGAAGGCGCCTAATATTTGCC 59.773 50.000 33.07 10.17 46.07 4.52
2237 6799 2.226674 GGAGAAGGCGCCTAATATTTGC 59.773 50.000 33.07 11.09 0.00 3.68
2238 6800 2.814336 GGGAGAAGGCGCCTAATATTTG 59.186 50.000 33.07 0.00 33.99 2.32
2239 6801 2.224793 GGGGAGAAGGCGCCTAATATTT 60.225 50.000 33.07 13.77 37.84 1.40
2240 6802 1.351350 GGGGAGAAGGCGCCTAATATT 59.649 52.381 33.07 14.71 37.84 1.28
2241 6803 0.984995 GGGGAGAAGGCGCCTAATAT 59.015 55.000 33.07 15.20 37.84 1.28
2242 6804 1.125711 GGGGGAGAAGGCGCCTAATA 61.126 60.000 33.07 0.00 40.46 0.98
2243 6805 2.452937 GGGGGAGAAGGCGCCTAAT 61.453 63.158 33.07 22.07 40.46 1.73
2244 6806 3.087906 GGGGGAGAAGGCGCCTAA 61.088 66.667 33.07 0.00 40.46 2.69
2408 6972 4.803426 CCTGCCCGAGACGAGCAC 62.803 72.222 0.00 0.00 32.06 4.40
2911 7480 3.392616 ACATCCACAACCAAACTCTCTCT 59.607 43.478 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.