Multiple sequence alignment - TraesCS7A01G014100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G014100 chr7A 100.000 4405 0 0 1 4405 6329529 6333933 0.000000e+00 8135.0
1 TraesCS7A01G014100 chr7D 94.216 1850 67 17 2571 4405 5087597 5089421 0.000000e+00 2787.0
2 TraesCS7A01G014100 chr7D 87.411 2256 182 50 6 2206 5084731 5086939 0.000000e+00 2499.0
3 TraesCS7A01G014100 chr7D 88.158 228 22 4 2571 2796 5087038 5087262 2.610000e-67 267.0
4 TraesCS7A01G014100 chr7D 87.647 170 18 3 2856 3025 596340315 596340481 1.250000e-45 195.0
5 TraesCS7A01G014100 chr4A 92.549 1879 93 23 2552 4405 737485684 737483828 0.000000e+00 2651.0
6 TraesCS7A01G014100 chr4A 89.195 870 45 24 839 1678 737487760 737486910 0.000000e+00 1040.0
7 TraesCS7A01G014100 chr4A 88.140 430 42 4 1735 2164 737486883 737486463 1.830000e-138 503.0
8 TraesCS7A01G014100 chr4A 87.500 280 26 1 2148 2427 737486017 737485747 9.200000e-82 315.0
9 TraesCS7A01G014100 chr4A 88.596 228 21 4 2571 2796 737486337 737486113 5.610000e-69 272.0
10 TraesCS7A01G014100 chr3B 85.768 267 31 4 2962 3222 49680485 49680220 4.340000e-70 276.0
11 TraesCS7A01G014100 chr5B 93.529 170 11 0 2410 2579 570575553 570575722 2.030000e-63 254.0
12 TraesCS7A01G014100 chr3D 93.976 166 10 0 2410 2575 116021256 116021421 7.310000e-63 252.0
13 TraesCS7A01G014100 chr3D 97.656 128 3 0 4278 4405 117118874 117118747 2.060000e-53 220.0
14 TraesCS7A01G014100 chr3D 87.647 170 18 3 2856 3025 567182097 567181931 1.250000e-45 195.0
15 TraesCS7A01G014100 chr3D 74.419 301 67 8 6 299 55150247 55150544 2.150000e-23 121.0
16 TraesCS7A01G014100 chr4D 93.491 169 10 1 2410 2577 366191494 366191326 2.630000e-62 250.0
17 TraesCS7A01G014100 chr4D 91.620 179 13 2 2410 2587 357312005 357312182 3.400000e-61 246.0
18 TraesCS7A01G014100 chr4D 96.923 130 2 1 4278 4405 276963106 276962977 2.670000e-52 217.0
19 TraesCS7A01G014100 chr4D 87.805 164 18 2 2856 3019 505471098 505471259 1.620000e-44 191.0
20 TraesCS7A01G014100 chr4D 81.250 240 40 5 6 243 320026556 320026792 5.820000e-44 189.0
21 TraesCS7A01G014100 chr4D 79.070 129 22 4 121 247 405469712 405469837 2.820000e-12 84.2
22 TraesCS7A01G014100 chr1D 92.982 171 10 2 2410 2580 196817841 196817673 9.460000e-62 248.0
23 TraesCS7A01G014100 chr1D 91.209 182 13 3 2410 2589 399189323 399189143 1.220000e-60 244.0
24 TraesCS7A01G014100 chr1D 87.647 170 18 3 2856 3025 26584503 26584337 1.250000e-45 195.0
25 TraesCS7A01G014100 chr1D 87.647 170 18 3 2856 3025 288331918 288332084 1.250000e-45 195.0
26 TraesCS7A01G014100 chr1D 87.059 170 19 3 2856 3025 335764640 335764474 5.820000e-44 189.0
27 TraesCS7A01G014100 chr1D 79.832 119 19 2 121 237 423608824 423608939 1.020000e-11 82.4
28 TraesCS7A01G014100 chr5A 92.045 176 13 1 2406 2580 290391863 290391688 3.400000e-61 246.0
29 TraesCS7A01G014100 chr5A 75.472 159 33 4 138 296 531250870 531250718 6.110000e-09 73.1
30 TraesCS7A01G014100 chr2D 90.155 193 14 3 2404 2595 560959481 560959669 3.400000e-61 246.0
31 TraesCS7A01G014100 chr1B 89.340 197 16 5 2397 2592 606841143 606841335 4.400000e-60 243.0
32 TraesCS7A01G014100 chrUn 96.923 130 2 1 4278 4405 398112655 398112784 2.670000e-52 217.0
33 TraesCS7A01G014100 chr6D 96.923 130 2 1 4278 4405 47370283 47370412 2.670000e-52 217.0
34 TraesCS7A01G014100 chr6D 96.923 130 2 1 4278 4405 59847983 59847854 2.670000e-52 217.0
35 TraesCS7A01G014100 chr6D 96.923 130 2 1 4278 4405 232523410 232523281 2.670000e-52 217.0
36 TraesCS7A01G014100 chr6D 96.923 130 2 1 4278 4405 373686595 373686724 2.670000e-52 217.0
37 TraesCS7A01G014100 chr5D 88.235 170 17 3 2856 3025 28003003 28003169 2.690000e-47 200.0
38 TraesCS7A01G014100 chr4B 80.165 242 47 1 6 246 400701674 400701433 3.500000e-41 180.0
39 TraesCS7A01G014100 chr6A 75.610 287 63 6 17 299 615394966 615395249 7.680000e-28 135.0
40 TraesCS7A01G014100 chr2A 76.923 143 28 4 6 145 608053825 608053965 4.720000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G014100 chr7A 6329529 6333933 4404 False 8135.0 8135 100.000000 1 4405 1 chr7A.!!$F1 4404
1 TraesCS7A01G014100 chr7D 5084731 5089421 4690 False 1851.0 2787 89.928333 6 4405 3 chr7D.!!$F2 4399
2 TraesCS7A01G014100 chr4A 737483828 737487760 3932 True 956.2 2651 89.196000 839 4405 5 chr4A.!!$R1 3566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
686 693 0.034670 GCATCCAGCAGAAGAACCCT 60.035 55.0 0.0 0.0 44.79 4.34 F
2415 3074 0.107752 CTCTTGGCTTCTGCTCCCTC 60.108 60.0 0.0 0.0 39.59 4.30 F
2854 3528 0.108138 CCAGTCACCGGCCTCTTAAG 60.108 60.0 0.0 0.0 0.00 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2621 3280 0.035458 ACAGTGTTGAGTAGCTGGCC 59.965 55.000 0.00 0.0 33.62 5.36 R
3317 3991 0.320421 GTAAGCGAAGTGGCACCTCA 60.320 55.000 15.27 0.0 34.64 3.86 R
3874 4560 1.000385 CATCAAAGCAAAAGGCCGTCA 60.000 47.619 0.00 0.0 46.50 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.803117 CGTAGCAAGGAGACGACAGA 59.197 55.000 0.00 0.00 38.88 3.41
29 30 3.374678 AGGAGACGACAGAAATCTACGTC 59.625 47.826 22.62 22.62 45.65 4.34
34 35 2.539142 CGACAGAAATCTACGTCGGAGG 60.539 54.545 4.23 0.00 45.60 4.30
38 39 2.022934 GAAATCTACGTCGGAGGTCCT 58.977 52.381 4.23 0.00 0.00 3.85
51 52 3.615592 CGGAGGTCCTTCAATTACGTTCA 60.616 47.826 0.00 0.00 0.00 3.18
52 53 3.933332 GGAGGTCCTTCAATTACGTTCAG 59.067 47.826 0.00 0.00 0.00 3.02
56 57 5.046591 AGGTCCTTCAATTACGTTCAGATGA 60.047 40.000 0.00 0.00 0.00 2.92
71 72 3.826729 TCAGATGAACGAACTTGAGGAGA 59.173 43.478 0.00 0.00 0.00 3.71
79 80 2.423892 CGAACTTGAGGAGAATCGGAGA 59.576 50.000 0.00 0.00 45.75 3.71
117 119 0.174162 AAAAAGCGCTGCCATCCATC 59.826 50.000 12.58 0.00 0.00 3.51
136 138 0.037326 CTGAGCGCCACACCTAAGAA 60.037 55.000 2.29 0.00 0.00 2.52
171 174 9.730705 AAACCTAACCTAAACTATTAACCAGAC 57.269 33.333 0.00 0.00 0.00 3.51
174 177 6.610075 AACCTAAACTATTAACCAGACCGA 57.390 37.500 0.00 0.00 0.00 4.69
203 206 3.954740 ATCCCTAACCCCGCCACCA 62.955 63.158 0.00 0.00 0.00 4.17
213 216 4.778415 CGCCACCAGTCGTCGGAG 62.778 72.222 0.00 0.00 0.00 4.63
223 226 4.554363 CGTCGGAGCGGCAGGTAG 62.554 72.222 1.45 0.00 0.00 3.18
224 227 3.138798 GTCGGAGCGGCAGGTAGA 61.139 66.667 1.45 0.00 0.00 2.59
247 250 1.945354 GAGGCGAATCCACGGTCTCA 61.945 60.000 0.00 0.00 37.29 3.27
249 252 0.462047 GGCGAATCCACGGTCTCATT 60.462 55.000 0.00 0.00 34.01 2.57
281 285 2.306219 GGAGGGGAGATTTACCATAGCC 59.694 54.545 0.00 0.00 0.00 3.93
282 286 2.979678 GAGGGGAGATTTACCATAGCCA 59.020 50.000 0.00 0.00 0.00 4.75
331 336 8.616942 TCACGGAAACCACACAATATTAATATG 58.383 33.333 8.74 6.15 0.00 1.78
409 414 8.431910 AGAGGGTCTAACTATTGTAACTTTCA 57.568 34.615 0.00 0.00 0.00 2.69
459 464 6.699204 TGTCTTGATTTTCAGCGCAAAATAAA 59.301 30.769 15.87 14.15 36.33 1.40
480 485 4.771590 AATGTAACATGTGGTGCTTGAG 57.228 40.909 0.00 0.00 0.00 3.02
485 490 6.106003 TGTAACATGTGGTGCTTGAGTATAG 58.894 40.000 0.00 0.00 0.00 1.31
495 500 4.809673 TGCTTGAGTATAGCACATATCCG 58.190 43.478 0.00 0.00 43.30 4.18
501 506 4.924625 AGTATAGCACATATCCGAGTCCT 58.075 43.478 0.00 0.00 0.00 3.85
509 514 5.764131 CACATATCCGAGTCCTAGAGTTTC 58.236 45.833 0.00 0.00 0.00 2.78
510 515 5.299531 CACATATCCGAGTCCTAGAGTTTCA 59.700 44.000 0.00 0.00 0.00 2.69
513 518 2.824341 TCCGAGTCCTAGAGTTTCAACC 59.176 50.000 0.00 0.00 0.00 3.77
523 528 3.477530 AGAGTTTCAACCTGCCAACTAC 58.522 45.455 0.00 0.00 29.43 2.73
556 561 8.706322 ATTGGACTAAAAACTCACATAACCTT 57.294 30.769 0.00 0.00 0.00 3.50
656 663 9.281371 TGTTTGATTTGATTTTATTGGATTGCA 57.719 25.926 0.00 0.00 0.00 4.08
664 671 3.737559 TTATTGGATTGCAGAGGGTGT 57.262 42.857 0.00 0.00 0.00 4.16
683 690 5.455754 GTGTTGGCATCCAGCAGAAGAAC 62.456 52.174 2.58 0.00 44.87 3.01
686 693 0.034670 GCATCCAGCAGAAGAACCCT 60.035 55.000 0.00 0.00 44.79 4.34
687 694 1.747709 CATCCAGCAGAAGAACCCTG 58.252 55.000 0.00 0.00 34.88 4.45
688 695 0.622665 ATCCAGCAGAAGAACCCTGG 59.377 55.000 0.00 0.00 44.84 4.45
698 705 1.149101 AGAACCCTGGCTCTTTTCCA 58.851 50.000 0.00 0.00 0.00 3.53
706 713 2.436417 TGGCTCTTTTCCAGATTTCCG 58.564 47.619 0.00 0.00 0.00 4.30
707 714 1.133216 GGCTCTTTTCCAGATTTCCGC 59.867 52.381 0.00 0.00 0.00 5.54
708 715 2.087646 GCTCTTTTCCAGATTTCCGCT 58.912 47.619 0.00 0.00 0.00 5.52
715 722 2.670635 CAGATTTCCGCTCTGGTCG 58.329 57.895 0.00 0.00 37.15 4.79
719 726 0.608640 ATTTCCGCTCTGGTCGACTT 59.391 50.000 16.46 0.00 39.52 3.01
724 731 1.587043 CGCTCTGGTCGACTTCCTCA 61.587 60.000 16.46 3.29 0.00 3.86
725 732 0.820871 GCTCTGGTCGACTTCCTCAT 59.179 55.000 16.46 0.00 0.00 2.90
726 733 1.202359 GCTCTGGTCGACTTCCTCATC 60.202 57.143 16.46 0.00 0.00 2.92
729 736 1.550524 CTGGTCGACTTCCTCATCCAA 59.449 52.381 16.46 0.00 0.00 3.53
730 737 1.974957 TGGTCGACTTCCTCATCCAAA 59.025 47.619 16.46 0.00 0.00 3.28
762 769 0.785979 GCAAAGTTTTCATGGCAGCG 59.214 50.000 0.00 0.00 0.00 5.18
767 774 0.598065 GTTTTCATGGCAGCGGAAGT 59.402 50.000 0.00 0.00 0.00 3.01
772 779 3.552132 TCATGGCAGCGGAAGTATTTA 57.448 42.857 0.00 0.00 0.00 1.40
773 780 3.879998 TCATGGCAGCGGAAGTATTTAA 58.120 40.909 0.00 0.00 0.00 1.52
802 838 5.718724 AAATCAAAGAGGGCTCAAGAAAG 57.281 39.130 0.00 0.00 0.00 2.62
809 845 2.362077 GAGGGCTCAAGAAAGTGCAAAA 59.638 45.455 0.00 0.00 0.00 2.44
835 871 1.331214 TTCTTTTGGGCAGCAGAAGG 58.669 50.000 0.00 0.00 0.00 3.46
836 872 0.478072 TCTTTTGGGCAGCAGAAGGA 59.522 50.000 0.00 0.00 0.00 3.36
1198 1264 2.345244 GGATGCATCCCGCGATCT 59.655 61.111 32.15 0.00 46.97 2.75
1292 1358 4.259850 GCGACAGTTTGACCGATAAATCTC 60.260 45.833 0.00 0.00 0.00 2.75
1338 1404 5.105473 AGCTAGCAGTAGTATTTTTGACCGA 60.105 40.000 18.83 0.00 0.00 4.69
1348 1418 7.681939 AGTATTTTTGACCGATAAAGCTTCA 57.318 32.000 0.00 0.00 0.00 3.02
1358 1428 3.191371 CGATAAAGCTTCAGTTTTGGCCT 59.809 43.478 3.32 0.00 31.09 5.19
1389 1459 8.792830 TTCAACAATGTCCCTAGAGATTTTAG 57.207 34.615 0.00 0.00 33.90 1.85
1391 1461 8.772250 TCAACAATGTCCCTAGAGATTTTAGAT 58.228 33.333 0.00 0.00 33.90 1.98
1409 1480 0.893727 ATTGTGCGGGGAAGTGGAAC 60.894 55.000 0.00 0.00 0.00 3.62
1425 1499 5.358298 GTGGAACTAACCTTTGACATCAC 57.642 43.478 0.00 0.00 0.00 3.06
1441 1515 0.605319 TCACCCATCGCTTGTTCACC 60.605 55.000 0.00 0.00 0.00 4.02
1591 1665 1.743996 CAGAGCAAGGTTAGCTTCCC 58.256 55.000 0.00 0.00 43.58 3.97
1622 1698 4.394729 TCCCCGATAGAAATAAACATGCC 58.605 43.478 0.00 0.00 39.76 4.40
1695 1772 8.211116 TGCTTACTAACTACTAGCTTACTCTG 57.789 38.462 0.00 0.00 33.15 3.35
1696 1773 7.134163 GCTTACTAACTACTAGCTTACTCTGC 58.866 42.308 0.00 0.00 0.00 4.26
1711 1789 0.607489 TCTGCTGGCTTTTGAGGCTC 60.607 55.000 7.79 7.79 35.21 4.70
1720 1798 2.233271 CTTTTGAGGCTCTGCTTTCCA 58.767 47.619 16.72 0.00 0.00 3.53
1729 1808 2.910688 TCTGCTTTCCAGAGTTCGTT 57.089 45.000 0.00 0.00 45.44 3.85
1740 1819 6.097915 TCCAGAGTTCGTTTATCAGTTCTT 57.902 37.500 0.00 0.00 0.00 2.52
1742 1821 5.926542 CCAGAGTTCGTTTATCAGTTCTTCA 59.073 40.000 0.00 0.00 0.00 3.02
1747 1826 6.091441 AGTTCGTTTATCAGTTCTTCATCTGC 59.909 38.462 0.00 0.00 0.00 4.26
1754 1833 5.072040 TCAGTTCTTCATCTGCGTATTGA 57.928 39.130 0.00 0.00 0.00 2.57
1762 1841 7.988737 TCTTCATCTGCGTATTGAATGAATTT 58.011 30.769 0.00 0.00 0.00 1.82
1769 1848 5.963004 TGCGTATTGAATGAATTTTACGAGC 59.037 36.000 13.58 0.00 28.80 5.03
1792 1871 5.586243 GCTCTCCAATACTTGTTGCATCTTA 59.414 40.000 0.00 0.00 0.00 2.10
1793 1872 6.238320 GCTCTCCAATACTTGTTGCATCTTAG 60.238 42.308 0.00 0.00 0.00 2.18
1794 1873 6.711277 TCTCCAATACTTGTTGCATCTTAGT 58.289 36.000 0.00 0.00 0.00 2.24
1813 1892 8.466617 TCTTAGTAGCTCTTTGGTAGAATAGG 57.533 38.462 0.00 0.00 30.91 2.57
1837 1916 9.315363 AGGCTTATATACAACTCTATGCTACTT 57.685 33.333 0.00 0.00 0.00 2.24
1857 1936 2.016318 TGTGTTCAGTGAGCAAGTTGG 58.984 47.619 11.59 0.00 0.00 3.77
1858 1937 2.017049 GTGTTCAGTGAGCAAGTTGGT 58.983 47.619 11.59 7.41 0.00 3.67
1859 1938 2.016318 TGTTCAGTGAGCAAGTTGGTG 58.984 47.619 13.24 0.00 0.00 4.17
1860 1939 1.024271 TTCAGTGAGCAAGTTGGTGC 58.976 50.000 13.24 5.26 45.28 5.01
1871 1950 4.620982 GCAAGTTGGTGCTGAAGTTATTT 58.379 39.130 4.75 0.00 41.51 1.40
1903 1982 7.962995 TTCTAGTTCATCTCCACTGAAGTAT 57.037 36.000 0.00 0.00 37.70 2.12
1904 1983 7.962995 TCTAGTTCATCTCCACTGAAGTATT 57.037 36.000 0.00 0.00 37.70 1.89
1905 1984 8.367660 TCTAGTTCATCTCCACTGAAGTATTT 57.632 34.615 0.00 0.00 37.70 1.40
1916 1995 6.995686 TCCACTGAAGTATTTGCTTCTTGTAA 59.004 34.615 9.35 0.49 43.74 2.41
1922 2001 9.120538 TGAAGTATTTGCTTCTTGTAAAGTTCT 57.879 29.630 9.35 0.00 46.34 3.01
1928 2007 6.613755 TGCTTCTTGTAAAGTTCTGTTACC 57.386 37.500 0.00 0.00 46.34 2.85
1966 2045 8.110860 ACATTGTAAACTATTACTGCTTTGCT 57.889 30.769 0.00 0.00 41.65 3.91
2005 2084 8.412456 TCTCATTTGTTTGATCAGCTTTACAAA 58.588 29.630 16.88 16.88 39.09 2.83
2013 2092 2.206750 TCAGCTTTACAAACGCGAAGT 58.793 42.857 15.93 10.75 0.00 3.01
2073 2152 1.518572 CTCGGGTATGTCGTGCACC 60.519 63.158 12.15 0.00 0.00 5.01
2093 2172 2.223377 CCGAGTGGTTCTTCCTTTTTCG 59.777 50.000 0.00 0.00 37.07 3.46
2101 2180 3.963383 TCTTCCTTTTTCGTGAACTGC 57.037 42.857 0.00 0.00 0.00 4.40
2107 2186 3.311322 CCTTTTTCGTGAACTGCAGTGTA 59.689 43.478 22.49 9.83 0.00 2.90
2111 2190 2.946564 TCGTGAACTGCAGTGTAGATG 58.053 47.619 22.49 10.01 0.00 2.90
2112 2191 2.556622 TCGTGAACTGCAGTGTAGATGA 59.443 45.455 22.49 12.15 0.00 2.92
2164 2722 3.204382 TCCTGTTCCTTTTCTGAAACCCT 59.796 43.478 1.58 0.00 0.00 4.34
2180 2738 1.688197 ACCCTGTTTGCCATTCAACAG 59.312 47.619 5.26 5.26 35.50 3.16
2183 2741 3.383761 CCTGTTTGCCATTCAACAGAAC 58.616 45.455 12.56 0.00 36.66 3.01
2186 2744 5.083533 TGTTTGCCATTCAACAGAACTTT 57.916 34.783 0.00 0.00 33.73 2.66
2189 2747 3.456280 TGCCATTCAACAGAACTTTTGC 58.544 40.909 0.00 0.00 0.00 3.68
2193 2751 5.222631 CCATTCAACAGAACTTTTGCCTAC 58.777 41.667 0.00 0.00 0.00 3.18
2195 2753 5.499139 TTCAACAGAACTTTTGCCTACAG 57.501 39.130 0.00 0.00 0.00 2.74
2215 2773 4.046462 CAGCTGTCTTTGGTTGATTTGTG 58.954 43.478 5.25 0.00 0.00 3.33
2221 2779 4.810491 GTCTTTGGTTGATTTGTGCACAAT 59.190 37.500 31.48 20.96 35.55 2.71
2222 2780 5.294060 GTCTTTGGTTGATTTGTGCACAATT 59.706 36.000 31.48 27.05 35.55 2.32
2223 2781 5.879223 TCTTTGGTTGATTTGTGCACAATTT 59.121 32.000 31.48 21.88 35.55 1.82
2224 2782 5.731599 TTGGTTGATTTGTGCACAATTTC 57.268 34.783 31.48 27.68 35.55 2.17
2225 2783 5.021033 TGGTTGATTTGTGCACAATTTCT 57.979 34.783 31.48 16.90 35.55 2.52
2226 2784 4.809958 TGGTTGATTTGTGCACAATTTCTG 59.190 37.500 31.48 0.00 35.55 3.02
2227 2785 4.810491 GGTTGATTTGTGCACAATTTCTGT 59.190 37.500 31.48 13.99 39.56 3.41
2228 2786 5.050837 GGTTGATTTGTGCACAATTTCTGTC 60.051 40.000 31.48 20.61 35.47 3.51
2229 2787 5.518848 TGATTTGTGCACAATTTCTGTCT 57.481 34.783 31.48 9.96 35.47 3.41
2251 2809 6.015772 GTCTAACTGACCTCTCCTATTCATCC 60.016 46.154 0.00 0.00 39.69 3.51
2262 2820 6.197903 TCTCCTATTCATCCTCTGAAACTCA 58.802 40.000 0.00 0.00 46.62 3.41
2295 2853 1.765314 ACACCATATCAGTCCAGAGCC 59.235 52.381 0.00 0.00 0.00 4.70
2301 2859 1.270907 ATCAGTCCAGAGCCGTCTTT 58.729 50.000 0.00 0.00 0.00 2.52
2303 2861 0.671781 CAGTCCAGAGCCGTCTTTGG 60.672 60.000 0.00 0.00 43.85 3.28
2330 2888 3.054276 TGTTTTGGTTAACGCACTTCG 57.946 42.857 0.00 0.00 45.38 3.79
2333 2891 2.228138 TTGGTTAACGCACTTCGAGT 57.772 45.000 0.00 0.00 41.67 4.18
2347 2905 4.859798 CACTTCGAGTCCACTCTAAACATC 59.140 45.833 5.21 0.00 40.75 3.06
2367 2925 5.948162 ACATCTGGTGCTGAAAATAGTGAAT 59.052 36.000 0.00 0.00 0.00 2.57
2387 2945 5.774690 TGAATATGTTGCCTTGGAAAAGTCT 59.225 36.000 0.00 0.00 0.00 3.24
2392 2950 4.142182 TGTTGCCTTGGAAAAGTCTTCTTG 60.142 41.667 0.00 0.00 33.79 3.02
2395 2953 4.578928 TGCCTTGGAAAAGTCTTCTTGTAC 59.421 41.667 0.00 0.00 33.79 2.90
2398 2956 5.470437 CCTTGGAAAAGTCTTCTTGTACCTC 59.530 44.000 0.00 0.00 33.79 3.85
2408 3067 3.685139 TCTTGTACCTCTTGGCTTCTG 57.315 47.619 0.00 0.00 36.63 3.02
2409 3068 2.079925 CTTGTACCTCTTGGCTTCTGC 58.920 52.381 0.00 0.00 36.63 4.26
2410 3069 1.352083 TGTACCTCTTGGCTTCTGCT 58.648 50.000 0.00 0.00 39.59 4.24
2411 3070 1.276421 TGTACCTCTTGGCTTCTGCTC 59.724 52.381 0.00 0.00 39.59 4.26
2412 3071 0.905357 TACCTCTTGGCTTCTGCTCC 59.095 55.000 0.00 0.00 39.59 4.70
2413 3072 1.077858 CCTCTTGGCTTCTGCTCCC 60.078 63.158 0.00 0.00 39.59 4.30
2414 3073 1.560866 CCTCTTGGCTTCTGCTCCCT 61.561 60.000 0.00 0.00 39.59 4.20
2415 3074 0.107752 CTCTTGGCTTCTGCTCCCTC 60.108 60.000 0.00 0.00 39.59 4.30
2416 3075 0.546267 TCTTGGCTTCTGCTCCCTCT 60.546 55.000 0.00 0.00 39.59 3.69
2417 3076 0.392729 CTTGGCTTCTGCTCCCTCTG 60.393 60.000 0.00 0.00 39.59 3.35
2418 3077 1.130054 TTGGCTTCTGCTCCCTCTGT 61.130 55.000 0.00 0.00 39.59 3.41
2419 3078 1.130054 TGGCTTCTGCTCCCTCTGTT 61.130 55.000 0.00 0.00 39.59 3.16
2420 3079 0.392327 GGCTTCTGCTCCCTCTGTTC 60.392 60.000 0.00 0.00 39.59 3.18
2421 3080 0.392327 GCTTCTGCTCCCTCTGTTCC 60.392 60.000 0.00 0.00 36.03 3.62
2422 3081 1.274712 CTTCTGCTCCCTCTGTTCCT 58.725 55.000 0.00 0.00 0.00 3.36
2423 3082 2.461695 CTTCTGCTCCCTCTGTTCCTA 58.538 52.381 0.00 0.00 0.00 2.94
2424 3083 2.623418 TCTGCTCCCTCTGTTCCTAA 57.377 50.000 0.00 0.00 0.00 2.69
2425 3084 2.902608 TCTGCTCCCTCTGTTCCTAAA 58.097 47.619 0.00 0.00 0.00 1.85
2426 3085 3.454858 TCTGCTCCCTCTGTTCCTAAAT 58.545 45.455 0.00 0.00 0.00 1.40
2427 3086 3.198635 TCTGCTCCCTCTGTTCCTAAATG 59.801 47.826 0.00 0.00 0.00 2.32
2428 3087 2.912956 TGCTCCCTCTGTTCCTAAATGT 59.087 45.455 0.00 0.00 0.00 2.71
2429 3088 3.330701 TGCTCCCTCTGTTCCTAAATGTT 59.669 43.478 0.00 0.00 0.00 2.71
2430 3089 4.202567 TGCTCCCTCTGTTCCTAAATGTTT 60.203 41.667 0.00 0.00 0.00 2.83
2431 3090 4.156739 GCTCCCTCTGTTCCTAAATGTTTG 59.843 45.833 0.00 0.00 0.00 2.93
2432 3091 5.316987 CTCCCTCTGTTCCTAAATGTTTGT 58.683 41.667 0.00 0.00 0.00 2.83
2433 3092 5.070001 TCCCTCTGTTCCTAAATGTTTGTG 58.930 41.667 0.00 0.00 0.00 3.33
2434 3093 4.827284 CCCTCTGTTCCTAAATGTTTGTGT 59.173 41.667 0.00 0.00 0.00 3.72
2435 3094 5.301805 CCCTCTGTTCCTAAATGTTTGTGTT 59.698 40.000 0.00 0.00 0.00 3.32
2436 3095 6.183360 CCCTCTGTTCCTAAATGTTTGTGTTT 60.183 38.462 0.00 0.00 0.00 2.83
2437 3096 6.918022 CCTCTGTTCCTAAATGTTTGTGTTTC 59.082 38.462 0.00 0.00 0.00 2.78
2438 3097 7.201821 CCTCTGTTCCTAAATGTTTGTGTTTCT 60.202 37.037 0.00 0.00 0.00 2.52
2439 3098 8.740123 TCTGTTCCTAAATGTTTGTGTTTCTA 57.260 30.769 0.00 0.00 0.00 2.10
2440 3099 8.836413 TCTGTTCCTAAATGTTTGTGTTTCTAG 58.164 33.333 0.00 0.00 0.00 2.43
2441 3100 8.740123 TGTTCCTAAATGTTTGTGTTTCTAGA 57.260 30.769 0.00 0.00 0.00 2.43
2442 3101 8.836413 TGTTCCTAAATGTTTGTGTTTCTAGAG 58.164 33.333 0.00 0.00 0.00 2.43
2443 3102 9.052759 GTTCCTAAATGTTTGTGTTTCTAGAGA 57.947 33.333 0.00 0.00 0.00 3.10
2444 3103 9.793259 TTCCTAAATGTTTGTGTTTCTAGAGAT 57.207 29.630 0.00 0.00 0.00 2.75
2445 3104 9.793259 TCCTAAATGTTTGTGTTTCTAGAGATT 57.207 29.630 0.00 0.00 0.00 2.40
2452 3111 9.734620 TGTTTGTGTTTCTAGAGATTTCAAATG 57.265 29.630 11.96 0.00 0.00 2.32
2453 3112 9.185192 GTTTGTGTTTCTAGAGATTTCAAATGG 57.815 33.333 11.96 0.00 0.00 3.16
2454 3113 8.690203 TTGTGTTTCTAGAGATTTCAAATGGA 57.310 30.769 0.00 0.00 0.00 3.41
2455 3114 8.099364 TGTGTTTCTAGAGATTTCAAATGGAC 57.901 34.615 0.00 0.00 0.00 4.02
2456 3115 7.939039 TGTGTTTCTAGAGATTTCAAATGGACT 59.061 33.333 0.00 0.00 0.00 3.85
2457 3116 8.233190 GTGTTTCTAGAGATTTCAAATGGACTG 58.767 37.037 0.00 0.00 0.00 3.51
2458 3117 6.992063 TTCTAGAGATTTCAAATGGACTGC 57.008 37.500 0.00 0.00 0.00 4.40
2459 3118 5.431765 TCTAGAGATTTCAAATGGACTGCC 58.568 41.667 0.00 0.00 0.00 4.85
2512 3171 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2513 3172 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
2514 3173 6.370994 AGTGTAGATTCACTCATTTTGCTCTG 59.629 38.462 0.00 0.00 44.07 3.35
2515 3174 6.148480 GTGTAGATTCACTCATTTTGCTCTGT 59.852 38.462 0.00 0.00 35.68 3.41
2516 3175 7.331934 GTGTAGATTCACTCATTTTGCTCTGTA 59.668 37.037 0.00 0.00 35.68 2.74
2517 3176 8.043113 TGTAGATTCACTCATTTTGCTCTGTAT 58.957 33.333 0.00 0.00 0.00 2.29
2518 3177 7.317842 AGATTCACTCATTTTGCTCTGTATG 57.682 36.000 0.00 0.00 0.00 2.39
2519 3178 6.883217 AGATTCACTCATTTTGCTCTGTATGT 59.117 34.615 0.00 0.00 0.00 2.29
2520 3179 8.043113 AGATTCACTCATTTTGCTCTGTATGTA 58.957 33.333 0.00 0.00 0.00 2.29
2521 3180 7.601073 TTCACTCATTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
2522 3181 6.108687 TCACTCATTTTGCTCTGTATGTAGG 58.891 40.000 0.00 0.00 0.00 3.18
2523 3182 4.878397 ACTCATTTTGCTCTGTATGTAGGC 59.122 41.667 0.00 0.00 0.00 3.93
2524 3183 4.842574 TCATTTTGCTCTGTATGTAGGCA 58.157 39.130 0.00 0.00 0.00 4.75
2525 3184 4.635765 TCATTTTGCTCTGTATGTAGGCAC 59.364 41.667 0.00 0.00 32.47 5.01
2526 3185 3.981071 TTTGCTCTGTATGTAGGCACT 57.019 42.857 0.00 0.00 46.37 4.40
2527 3186 3.981071 TTGCTCTGTATGTAGGCACTT 57.019 42.857 0.00 0.00 41.75 3.16
2528 3187 3.251479 TGCTCTGTATGTAGGCACTTG 57.749 47.619 0.00 0.00 41.75 3.16
2529 3188 2.567169 TGCTCTGTATGTAGGCACTTGT 59.433 45.455 0.00 0.00 41.75 3.16
2530 3189 3.007940 TGCTCTGTATGTAGGCACTTGTT 59.992 43.478 0.00 0.00 41.75 2.83
2531 3190 3.372206 GCTCTGTATGTAGGCACTTGTTG 59.628 47.826 0.00 0.00 41.75 3.33
2532 3191 4.820897 CTCTGTATGTAGGCACTTGTTGA 58.179 43.478 0.00 0.00 41.75 3.18
2533 3192 5.222079 TCTGTATGTAGGCACTTGTTGAA 57.778 39.130 0.00 0.00 41.75 2.69
2534 3193 5.616270 TCTGTATGTAGGCACTTGTTGAAA 58.384 37.500 0.00 0.00 41.75 2.69
2535 3194 6.237901 TCTGTATGTAGGCACTTGTTGAAAT 58.762 36.000 0.00 0.00 41.75 2.17
2536 3195 6.714810 TCTGTATGTAGGCACTTGTTGAAATT 59.285 34.615 0.00 0.00 41.75 1.82
2537 3196 7.230510 TCTGTATGTAGGCACTTGTTGAAATTT 59.769 33.333 0.00 0.00 41.75 1.82
2538 3197 7.367285 TGTATGTAGGCACTTGTTGAAATTTC 58.633 34.615 11.41 11.41 41.75 2.17
2539 3198 6.655078 ATGTAGGCACTTGTTGAAATTTCT 57.345 33.333 18.64 0.00 41.75 2.52
2540 3199 7.759489 ATGTAGGCACTTGTTGAAATTTCTA 57.241 32.000 18.64 8.95 41.75 2.10
2541 3200 7.202016 TGTAGGCACTTGTTGAAATTTCTAG 57.798 36.000 18.64 12.38 41.75 2.43
2542 3201 6.995686 TGTAGGCACTTGTTGAAATTTCTAGA 59.004 34.615 18.64 7.52 41.75 2.43
2543 3202 6.959639 AGGCACTTGTTGAAATTTCTAGAA 57.040 33.333 18.64 14.37 27.25 2.10
2544 3203 7.346751 AGGCACTTGTTGAAATTTCTAGAAA 57.653 32.000 19.83 19.83 27.25 2.52
2545 3204 7.428826 AGGCACTTGTTGAAATTTCTAGAAAG 58.571 34.615 21.75 17.38 27.25 2.62
2546 3205 7.285401 AGGCACTTGTTGAAATTTCTAGAAAGA 59.715 33.333 21.75 1.61 27.25 2.52
2547 3206 7.379797 GGCACTTGTTGAAATTTCTAGAAAGAC 59.620 37.037 21.75 15.22 33.32 3.01
2548 3207 7.915397 GCACTTGTTGAAATTTCTAGAAAGACA 59.085 33.333 21.75 17.21 33.32 3.41
2549 3208 9.787532 CACTTGTTGAAATTTCTAGAAAGACAA 57.212 29.630 21.75 20.91 33.32 3.18
2562 3221 9.595823 TTCTAGAAAGACAAATATTTAGGGACG 57.404 33.333 1.68 0.00 0.00 4.79
2563 3222 8.202137 TCTAGAAAGACAAATATTTAGGGACGG 58.798 37.037 0.00 0.00 0.00 4.79
2564 3223 6.954232 AGAAAGACAAATATTTAGGGACGGA 58.046 36.000 0.00 0.00 0.00 4.69
2565 3224 7.048512 AGAAAGACAAATATTTAGGGACGGAG 58.951 38.462 0.00 0.00 0.00 4.63
2566 3225 5.291905 AGACAAATATTTAGGGACGGAGG 57.708 43.478 0.00 0.00 0.00 4.30
2567 3226 4.966805 AGACAAATATTTAGGGACGGAGGA 59.033 41.667 0.00 0.00 0.00 3.71
2568 3227 5.427481 AGACAAATATTTAGGGACGGAGGAA 59.573 40.000 0.00 0.00 0.00 3.36
2569 3228 5.681639 ACAAATATTTAGGGACGGAGGAAG 58.318 41.667 0.00 0.00 0.00 3.46
2570 3229 5.191124 ACAAATATTTAGGGACGGAGGAAGT 59.809 40.000 0.00 0.00 0.00 3.01
2598 3257 9.384764 GATATTATGTTTAGAATGTAGGGCCTC 57.615 37.037 10.74 2.12 0.00 4.70
2611 3270 5.887754 TGTAGGGCCTCTTAAGTTCATTTT 58.112 37.500 10.74 0.00 0.00 1.82
2612 3271 6.311735 TGTAGGGCCTCTTAAGTTCATTTTT 58.688 36.000 10.74 0.00 0.00 1.94
2621 3280 7.645340 CCTCTTAAGTTCATTTTTGTCACTGTG 59.355 37.037 0.17 0.17 0.00 3.66
2630 3289 0.250295 TTGTCACTGTGGCCAGCTAC 60.250 55.000 5.11 0.61 42.81 3.58
2632 3291 0.390472 GTCACTGTGGCCAGCTACTC 60.390 60.000 5.11 0.00 42.81 2.59
2685 3347 5.591067 ACACAAGTATAGTAGCTGTCCTCTC 59.409 44.000 0.00 0.00 0.00 3.20
2693 3355 4.605183 AGTAGCTGTCCTCTCAACTGTAT 58.395 43.478 0.00 0.00 0.00 2.29
2806 3479 6.106877 TGAAGTTCTTGTTTTCTCAGTTCG 57.893 37.500 4.17 0.00 0.00 3.95
2842 3516 6.385649 TCTTTTATGTGTTTTCCCAGTCAC 57.614 37.500 0.00 0.00 0.00 3.67
2843 3517 5.300792 TCTTTTATGTGTTTTCCCAGTCACC 59.699 40.000 0.00 0.00 0.00 4.02
2844 3518 1.604604 ATGTGTTTTCCCAGTCACCG 58.395 50.000 0.00 0.00 0.00 4.94
2845 3519 0.464735 TGTGTTTTCCCAGTCACCGG 60.465 55.000 0.00 0.00 0.00 5.28
2846 3520 1.527380 TGTTTTCCCAGTCACCGGC 60.527 57.895 0.00 0.00 0.00 6.13
2847 3521 2.114411 TTTTCCCAGTCACCGGCC 59.886 61.111 0.00 0.00 0.00 6.13
2848 3522 2.457323 TTTTCCCAGTCACCGGCCT 61.457 57.895 0.00 0.00 0.00 5.19
2849 3523 2.406002 TTTTCCCAGTCACCGGCCTC 62.406 60.000 0.00 0.00 0.00 4.70
2850 3524 3.846405 TTCCCAGTCACCGGCCTCT 62.846 63.158 0.00 0.00 0.00 3.69
2851 3525 3.322466 CCCAGTCACCGGCCTCTT 61.322 66.667 0.00 0.00 0.00 2.85
2852 3526 1.987855 CCCAGTCACCGGCCTCTTA 60.988 63.158 0.00 0.00 0.00 2.10
2853 3527 1.550130 CCCAGTCACCGGCCTCTTAA 61.550 60.000 0.00 0.00 0.00 1.85
2854 3528 0.108138 CCAGTCACCGGCCTCTTAAG 60.108 60.000 0.00 0.00 0.00 1.85
2862 3536 3.127030 CACCGGCCTCTTAAGTTCATTTC 59.873 47.826 0.00 0.00 0.00 2.17
2868 3542 6.347888 CGGCCTCTTAAGTTCATTTCGTTTTA 60.348 38.462 0.00 0.00 0.00 1.52
3039 3713 5.776716 ACTTTTGTTGATGTTCCAGATGGAT 59.223 36.000 1.61 0.00 44.98 3.41
3043 3717 7.572523 TTGTTGATGTTCCAGATGGATAATC 57.427 36.000 1.61 9.35 44.98 1.75
3110 3784 2.338500 GTGTTCAGACGGTTCATCTCC 58.662 52.381 0.00 0.00 0.00 3.71
3140 3814 0.388649 AGTTGCGCTCTCCTGTAACG 60.389 55.000 9.73 0.00 0.00 3.18
3281 3955 6.487331 ACGTCAACATTTACCCAGACAATTTA 59.513 34.615 0.00 0.00 0.00 1.40
3317 3991 4.202441 CATTGTCATCCCTCGGAGAATTT 58.798 43.478 6.58 0.00 34.05 1.82
3424 4098 1.079127 CACTTTCGGTGGGCGATCT 60.079 57.895 0.00 0.00 41.90 2.75
3461 4135 2.231235 GGTGCTGAATGGTACCAAAAGG 59.769 50.000 20.76 10.94 40.80 3.11
3551 4228 2.202932 CTTGGGCCATCGTCTCGG 60.203 66.667 7.26 0.00 0.00 4.63
3567 4244 2.125106 GGGCGGGGCGATATGATC 60.125 66.667 0.00 0.00 0.00 2.92
3617 4294 7.968405 ACGTTGAGAAATAGTGAATAATTTGCC 59.032 33.333 0.00 0.00 0.00 4.52
3621 4298 7.833682 TGAGAAATAGTGAATAATTTGCCTGGA 59.166 33.333 0.00 0.00 0.00 3.86
3874 4560 3.777465 ATATTGCTCTACGTGTCGTGT 57.223 42.857 0.00 0.00 41.39 4.49
3985 4671 0.464373 CAGTTGATCCATGGACCCCG 60.464 60.000 18.99 0.00 0.00 5.73
4044 4730 6.000219 AGCTGAATTACATTGACACTGACTT 59.000 36.000 0.00 0.00 0.00 3.01
4046 4732 6.293626 GCTGAATTACATTGACACTGACTTGT 60.294 38.462 0.00 0.00 0.00 3.16
4068 4754 3.127791 AGTGGAGACCCATTGATCTCT 57.872 47.619 14.06 0.00 45.68 3.10
4069 4755 2.770802 AGTGGAGACCCATTGATCTCTG 59.229 50.000 14.06 0.00 45.68 3.35
4070 4756 1.487976 TGGAGACCCATTGATCTCTGC 59.512 52.381 14.06 0.00 41.05 4.26
4188 4884 8.649841 CATCCAAAGTGCTAATACAAAATGTTG 58.350 33.333 0.00 0.00 40.84 3.33
4207 4903 1.202806 TGAAAGAGAAGGGCACTGGTG 60.203 52.381 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.803117 TCTGTCGTCTCCTTGCTACG 59.197 55.000 0.00 0.00 37.96 3.51
1 2 3.299340 TTTCTGTCGTCTCCTTGCTAC 57.701 47.619 0.00 0.00 0.00 3.58
2 3 3.764434 AGATTTCTGTCGTCTCCTTGCTA 59.236 43.478 0.00 0.00 0.00 3.49
3 4 2.564947 AGATTTCTGTCGTCTCCTTGCT 59.435 45.455 0.00 0.00 0.00 3.91
4 5 2.966050 AGATTTCTGTCGTCTCCTTGC 58.034 47.619 0.00 0.00 0.00 4.01
15 16 2.422832 GACCTCCGACGTAGATTTCTGT 59.577 50.000 0.00 0.00 0.00 3.41
16 17 2.223525 GGACCTCCGACGTAGATTTCTG 60.224 54.545 0.00 0.00 0.00 3.02
19 20 2.140839 AGGACCTCCGACGTAGATTT 57.859 50.000 0.00 0.00 42.08 2.17
29 30 2.667473 ACGTAATTGAAGGACCTCCG 57.333 50.000 0.00 0.00 42.08 4.63
34 35 6.534934 GTTCATCTGAACGTAATTGAAGGAC 58.465 40.000 7.27 0.00 43.97 3.85
51 52 4.873746 TTCTCCTCAAGTTCGTTCATCT 57.126 40.909 0.00 0.00 0.00 2.90
52 53 4.266502 CGATTCTCCTCAAGTTCGTTCATC 59.733 45.833 0.00 0.00 31.51 2.92
56 57 2.561419 TCCGATTCTCCTCAAGTTCGTT 59.439 45.455 0.00 0.00 33.08 3.85
79 80 2.589798 TCTCGAGTTTGTGTTTCGGT 57.410 45.000 13.13 0.00 35.21 4.69
82 83 4.202358 CGCTTTTTCTCGAGTTTGTGTTTC 59.798 41.667 13.13 0.00 0.00 2.78
86 87 2.036933 GCGCTTTTTCTCGAGTTTGTG 58.963 47.619 13.13 7.44 0.00 3.33
117 119 0.037326 TTCTTAGGTGTGGCGCTCAG 60.037 55.000 7.64 0.00 0.00 3.35
148 151 6.982724 CGGTCTGGTTAATAGTTTAGGTTAGG 59.017 42.308 0.00 0.00 0.00 2.69
168 171 2.240162 GATCCCGGTGCTTTCGGTCT 62.240 60.000 0.00 0.11 45.51 3.85
169 172 1.814169 GATCCCGGTGCTTTCGGTC 60.814 63.158 0.00 0.00 45.51 4.79
171 174 2.513897 GGATCCCGGTGCTTTCGG 60.514 66.667 0.00 6.08 46.43 4.30
174 177 0.255033 GTTAGGGATCCCGGTGCTTT 59.745 55.000 25.48 8.46 41.95 3.51
187 190 4.109675 CTGGTGGCGGGGTTAGGG 62.110 72.222 0.00 0.00 0.00 3.53
210 213 3.541713 CCCTCTACCTGCCGCTCC 61.542 72.222 0.00 0.00 0.00 4.70
213 216 3.541713 CTCCCCTCTACCTGCCGC 61.542 72.222 0.00 0.00 0.00 6.53
223 226 2.506472 GTGGATTCGCCTCCCCTC 59.494 66.667 1.25 0.00 37.63 4.30
224 227 3.470888 CGTGGATTCGCCTCCCCT 61.471 66.667 1.25 0.00 37.63 4.79
247 250 0.554792 CCCCTCCAGGCTTCATCAAT 59.445 55.000 0.00 0.00 0.00 2.57
249 252 0.984961 CTCCCCTCCAGGCTTCATCA 60.985 60.000 0.00 0.00 0.00 3.07
281 285 1.490910 GAACTCCCCTATCCCTTGGTG 59.509 57.143 0.00 0.00 0.00 4.17
282 286 1.082194 TGAACTCCCCTATCCCTTGGT 59.918 52.381 0.00 0.00 0.00 3.67
331 336 5.784578 ACAATTCCTTTTACCACCAAGAC 57.215 39.130 0.00 0.00 0.00 3.01
344 349 5.513233 AGATGTAGGATGCAACAATTCCTT 58.487 37.500 10.97 0.00 40.37 3.36
346 351 5.841957 AAGATGTAGGATGCAACAATTCC 57.158 39.130 0.00 0.00 31.62 3.01
347 352 6.038356 CCAAAGATGTAGGATGCAACAATTC 58.962 40.000 0.00 0.00 31.62 2.17
417 422 7.451501 TCAAGACATGCATCATTAACTTTCA 57.548 32.000 0.00 0.00 0.00 2.69
422 427 8.692110 TGAAAATCAAGACATGCATCATTAAC 57.308 30.769 0.00 0.00 0.00 2.01
431 436 1.916000 GCGCTGAAAATCAAGACATGC 59.084 47.619 0.00 0.00 0.00 4.06
435 440 6.689178 TTATTTTGCGCTGAAAATCAAGAC 57.311 33.333 18.42 0.00 36.94 3.01
459 464 4.144297 ACTCAAGCACCACATGTTACATT 58.856 39.130 0.00 0.00 0.00 2.71
480 485 6.114089 TCTAGGACTCGGATATGTGCTATAC 58.886 44.000 0.00 0.00 36.72 1.47
485 490 3.150767 ACTCTAGGACTCGGATATGTGC 58.849 50.000 0.00 0.00 0.00 4.57
488 493 6.210078 GTTGAAACTCTAGGACTCGGATATG 58.790 44.000 0.00 0.00 0.00 1.78
492 497 2.824341 GGTTGAAACTCTAGGACTCGGA 59.176 50.000 0.00 0.00 0.00 4.55
495 500 3.591023 GCAGGTTGAAACTCTAGGACTC 58.409 50.000 0.00 0.00 0.00 3.36
501 506 3.857157 AGTTGGCAGGTTGAAACTCTA 57.143 42.857 0.00 0.00 0.00 2.43
509 514 1.944024 TGTTTCGTAGTTGGCAGGTTG 59.056 47.619 0.00 0.00 0.00 3.77
510 515 2.335316 TGTTTCGTAGTTGGCAGGTT 57.665 45.000 0.00 0.00 0.00 3.50
513 518 3.980775 CCAATTTGTTTCGTAGTTGGCAG 59.019 43.478 0.00 0.00 30.91 4.85
523 528 7.486551 TGTGAGTTTTTAGTCCAATTTGTTTCG 59.513 33.333 0.00 0.00 0.00 3.46
633 639 9.373603 CTCTGCAATCCAATAAAATCAAATCAA 57.626 29.630 0.00 0.00 0.00 2.57
656 663 1.687612 CTGGATGCCAACACCCTCT 59.312 57.895 0.00 0.00 30.80 3.69
664 671 1.538047 GTTCTTCTGCTGGATGCCAA 58.462 50.000 0.00 0.00 42.00 4.52
673 680 0.839853 AGAGCCAGGGTTCTTCTGCT 60.840 55.000 0.00 0.00 31.67 4.24
686 693 2.436417 CGGAAATCTGGAAAAGAGCCA 58.564 47.619 0.00 0.00 38.67 4.75
687 694 1.133216 GCGGAAATCTGGAAAAGAGCC 59.867 52.381 0.00 0.00 38.67 4.70
688 695 2.087646 AGCGGAAATCTGGAAAAGAGC 58.912 47.619 0.00 0.00 38.67 4.09
698 705 0.173708 GTCGACCAGAGCGGAAATCT 59.826 55.000 3.51 0.00 38.63 2.40
705 712 1.137825 GAGGAAGTCGACCAGAGCG 59.862 63.158 13.01 0.00 0.00 5.03
706 713 0.820871 ATGAGGAAGTCGACCAGAGC 59.179 55.000 13.01 0.00 0.00 4.09
707 714 1.407258 GGATGAGGAAGTCGACCAGAG 59.593 57.143 13.01 0.00 0.00 3.35
708 715 1.272480 TGGATGAGGAAGTCGACCAGA 60.272 52.381 13.01 0.00 31.86 3.86
741 748 1.796459 GCTGCCATGAAAACTTTGCAG 59.204 47.619 10.76 10.76 46.70 4.41
773 780 8.650490 TCTTGAGCCCTCTTTGATTTTATTTTT 58.350 29.630 0.00 0.00 0.00 1.94
778 785 6.777580 ACTTTCTTGAGCCCTCTTTGATTTTA 59.222 34.615 0.00 0.00 0.00 1.52
779 786 5.600069 ACTTTCTTGAGCCCTCTTTGATTTT 59.400 36.000 0.00 0.00 0.00 1.82
789 796 2.071778 TTTGCACTTTCTTGAGCCCT 57.928 45.000 0.00 0.00 0.00 5.19
792 828 3.783111 GCATTTTGCACTTTCTTGAGC 57.217 42.857 0.00 0.00 44.26 4.26
809 845 2.224572 TGCTGCCCAAAAGAATTTGCAT 60.225 40.909 0.00 0.00 43.73 3.96
914 952 0.530870 GAGAGTATTGGTGGCTCGGC 60.531 60.000 0.00 0.00 34.69 5.54
915 953 0.824109 TGAGAGTATTGGTGGCTCGG 59.176 55.000 0.00 0.00 34.69 4.63
916 954 1.478510 AGTGAGAGTATTGGTGGCTCG 59.521 52.381 0.00 0.00 34.69 5.03
917 955 2.480416 CGAGTGAGAGTATTGGTGGCTC 60.480 54.545 0.00 0.00 0.00 4.70
918 956 1.478510 CGAGTGAGAGTATTGGTGGCT 59.521 52.381 0.00 0.00 0.00 4.75
1054 1093 1.152096 AGAAGAGGACGGGGTTGGT 60.152 57.895 0.00 0.00 0.00 3.67
1235 1301 1.084370 CCTCACCGGATCGAAAGCAC 61.084 60.000 9.46 0.00 33.16 4.40
1292 1358 6.703165 AGCTTAAAAAGTTTCAGAAATGCTGG 59.297 34.615 0.00 0.00 44.98 4.85
1330 1396 6.205784 CAAAACTGAAGCTTTATCGGTCAAA 58.794 36.000 0.00 0.00 35.38 2.69
1338 1404 5.070313 TGAAAGGCCAAAACTGAAGCTTTAT 59.930 36.000 5.01 0.00 0.00 1.40
1348 1418 5.096443 TGTTGAAATGAAAGGCCAAAACT 57.904 34.783 5.01 0.00 0.00 2.66
1358 1428 7.230747 TCTCTAGGGACATTGTTGAAATGAAA 58.769 34.615 5.13 0.00 0.00 2.69
1389 1459 0.608035 TTCCACTTCCCCGCACAATC 60.608 55.000 0.00 0.00 0.00 2.67
1391 1461 1.527380 GTTCCACTTCCCCGCACAA 60.527 57.895 0.00 0.00 0.00 3.33
1409 1480 3.623060 CGATGGGTGATGTCAAAGGTTAG 59.377 47.826 0.00 0.00 0.00 2.34
1425 1499 0.321564 TGAGGTGAACAAGCGATGGG 60.322 55.000 0.00 0.00 0.00 4.00
1441 1515 1.543614 CAGCTTGTCGATCGTCTGAG 58.456 55.000 15.94 12.40 0.00 3.35
1591 1665 3.926058 TTCTATCGGGGAAAAGAAGGG 57.074 47.619 0.00 0.00 0.00 3.95
1670 1747 7.201714 GCAGAGTAAGCTAGTAGTTAGTAAGCA 60.202 40.741 0.00 0.00 0.00 3.91
1671 1748 7.012610 AGCAGAGTAAGCTAGTAGTTAGTAAGC 59.987 40.741 0.00 7.02 41.32 3.09
1672 1749 8.339714 CAGCAGAGTAAGCTAGTAGTTAGTAAG 58.660 40.741 0.00 0.00 41.14 2.34
1673 1750 7.282675 CCAGCAGAGTAAGCTAGTAGTTAGTAA 59.717 40.741 0.00 0.00 41.14 2.24
1674 1751 6.766944 CCAGCAGAGTAAGCTAGTAGTTAGTA 59.233 42.308 0.00 0.00 41.14 1.82
1675 1752 5.591067 CCAGCAGAGTAAGCTAGTAGTTAGT 59.409 44.000 0.00 0.24 41.14 2.24
1676 1753 5.506649 GCCAGCAGAGTAAGCTAGTAGTTAG 60.507 48.000 0.00 0.00 41.14 2.34
1677 1754 4.338682 GCCAGCAGAGTAAGCTAGTAGTTA 59.661 45.833 0.00 0.00 41.14 2.24
1678 1755 3.131400 GCCAGCAGAGTAAGCTAGTAGTT 59.869 47.826 0.00 0.00 41.14 2.24
1679 1756 2.691011 GCCAGCAGAGTAAGCTAGTAGT 59.309 50.000 0.00 0.00 41.14 2.73
1680 1757 2.955660 AGCCAGCAGAGTAAGCTAGTAG 59.044 50.000 0.00 0.00 41.14 2.57
1695 1772 1.881602 CAGAGCCTCAAAAGCCAGC 59.118 57.895 0.00 0.00 0.00 4.85
1696 1773 0.608582 AGCAGAGCCTCAAAAGCCAG 60.609 55.000 0.00 0.00 0.00 4.85
1711 1789 4.690748 TGATAAACGAACTCTGGAAAGCAG 59.309 41.667 0.00 0.00 0.00 4.24
1720 1798 7.543868 CAGATGAAGAACTGATAAACGAACTCT 59.456 37.037 0.00 0.00 36.38 3.24
1729 1808 7.264947 TCAATACGCAGATGAAGAACTGATAA 58.735 34.615 0.00 0.00 36.38 1.75
1740 1819 7.850492 CGTAAAATTCATTCAATACGCAGATGA 59.150 33.333 0.00 0.00 31.23 2.92
1742 1821 7.915508 TCGTAAAATTCATTCAATACGCAGAT 58.084 30.769 0.00 0.00 36.87 2.90
1747 1826 7.621991 AGAGCTCGTAAAATTCATTCAATACG 58.378 34.615 8.37 0.00 37.92 3.06
1754 1833 7.770897 AGTATTGGAGAGCTCGTAAAATTCATT 59.229 33.333 8.37 0.00 0.00 2.57
1792 1871 5.212745 AGCCTATTCTACCAAAGAGCTACT 58.787 41.667 0.00 0.00 32.00 2.57
1793 1872 5.538849 AGCCTATTCTACCAAAGAGCTAC 57.461 43.478 0.00 0.00 32.00 3.58
1794 1873 7.857404 ATAAGCCTATTCTACCAAAGAGCTA 57.143 36.000 0.00 0.00 32.44 3.32
1813 1892 9.915629 ACAAGTAGCATAGAGTTGTATATAAGC 57.084 33.333 0.00 0.00 38.41 3.09
1837 1916 2.016318 CCAACTTGCTCACTGAACACA 58.984 47.619 0.00 0.00 0.00 3.72
1857 1936 7.147976 AGAATGAACCAAAATAACTTCAGCAC 58.852 34.615 0.00 0.00 0.00 4.40
1858 1937 7.288810 AGAATGAACCAAAATAACTTCAGCA 57.711 32.000 0.00 0.00 0.00 4.41
1859 1938 8.515414 ACTAGAATGAACCAAAATAACTTCAGC 58.485 33.333 0.00 0.00 0.00 4.26
1871 1950 6.013379 AGTGGAGATGAACTAGAATGAACCAA 60.013 38.462 0.00 0.00 0.00 3.67
1903 1982 7.477494 GGTAACAGAACTTTACAAGAAGCAAA 58.523 34.615 0.00 0.00 32.01 3.68
1904 1983 6.238266 CGGTAACAGAACTTTACAAGAAGCAA 60.238 38.462 0.00 0.00 32.01 3.91
1905 1984 5.235616 CGGTAACAGAACTTTACAAGAAGCA 59.764 40.000 0.00 0.00 32.01 3.91
1941 2020 8.023128 CAGCAAAGCAGTAATAGTTTACAATGT 58.977 33.333 0.00 0.00 40.20 2.71
1966 2045 4.973168 ACAAATGAGAGACTTGTAAGCCA 58.027 39.130 0.00 0.00 31.63 4.75
2005 2084 2.803817 AACCACCTCCACTTCGCGT 61.804 57.895 5.77 0.00 0.00 6.01
2013 2092 2.241176 ACTTCTTTGACAACCACCTCCA 59.759 45.455 0.00 0.00 0.00 3.86
2073 2152 2.870411 ACGAAAAAGGAAGAACCACTCG 59.130 45.455 0.00 0.00 42.04 4.18
2076 2155 4.095932 AGTTCACGAAAAAGGAAGAACCAC 59.904 41.667 0.00 0.00 42.04 4.16
2078 2157 4.598062 CAGTTCACGAAAAAGGAAGAACC 58.402 43.478 0.00 0.00 36.84 3.62
2093 2172 4.172505 CTCTCATCTACACTGCAGTTCAC 58.827 47.826 18.94 0.00 0.00 3.18
2101 2180 8.178964 GTGTACTAAGAACTCTCATCTACACTG 58.821 40.741 0.00 0.00 33.20 3.66
2107 2186 7.768807 AGTTGTGTACTAAGAACTCTCATCT 57.231 36.000 0.00 0.00 34.56 2.90
2164 2722 4.734398 AAGTTCTGTTGAATGGCAAACA 57.266 36.364 3.45 3.45 38.44 2.83
2180 2738 3.142174 AGACAGCTGTAGGCAAAAGTTC 58.858 45.455 21.73 2.18 44.79 3.01
2183 2741 3.304928 CCAAAGACAGCTGTAGGCAAAAG 60.305 47.826 21.73 4.61 44.79 2.27
2186 2744 1.142870 ACCAAAGACAGCTGTAGGCAA 59.857 47.619 21.73 0.00 44.79 4.52
2189 2747 3.126001 TCAACCAAAGACAGCTGTAGG 57.874 47.619 21.73 20.44 0.00 3.18
2193 2751 4.046462 CACAAATCAACCAAAGACAGCTG 58.954 43.478 13.48 13.48 0.00 4.24
2195 2753 2.796593 GCACAAATCAACCAAAGACAGC 59.203 45.455 0.00 0.00 0.00 4.40
2226 2784 6.015772 GGATGAATAGGAGAGGTCAGTTAGAC 60.016 46.154 0.00 0.00 46.83 2.59
2227 2785 6.071984 GGATGAATAGGAGAGGTCAGTTAGA 58.928 44.000 0.00 0.00 0.00 2.10
2228 2786 6.074648 AGGATGAATAGGAGAGGTCAGTTAG 58.925 44.000 0.00 0.00 0.00 2.34
2229 2787 6.031964 AGGATGAATAGGAGAGGTCAGTTA 57.968 41.667 0.00 0.00 0.00 2.24
2262 2820 8.807948 ACTGATATGGTGTTAAATAGCAAACT 57.192 30.769 0.00 0.00 0.00 2.66
2295 2853 3.801594 CCAAAACAAATCCACCAAAGACG 59.198 43.478 0.00 0.00 0.00 4.18
2301 2859 4.683832 CGTTAACCAAAACAAATCCACCA 58.316 39.130 0.00 0.00 0.00 4.17
2303 2861 4.026393 GTGCGTTAACCAAAACAAATCCAC 60.026 41.667 0.00 0.00 0.00 4.02
2330 2888 4.499183 CACCAGATGTTTAGAGTGGACTC 58.501 47.826 0.00 0.00 43.17 3.36
2333 2891 2.906389 AGCACCAGATGTTTAGAGTGGA 59.094 45.455 0.00 0.00 32.26 4.02
2347 2905 7.325660 ACATATTCACTATTTTCAGCACCAG 57.674 36.000 0.00 0.00 0.00 4.00
2367 2925 5.385198 AGAAGACTTTTCCAAGGCAACATA 58.615 37.500 0.00 0.00 41.16 2.29
2387 2945 3.807209 GCAGAAGCCAAGAGGTACAAGAA 60.807 47.826 0.00 0.00 37.19 2.52
2392 2950 1.406205 GGAGCAGAAGCCAAGAGGTAC 60.406 57.143 0.00 0.00 43.56 3.34
2395 2953 1.077858 GGGAGCAGAAGCCAAGAGG 60.078 63.158 0.00 0.00 43.56 3.69
2398 2956 0.392729 CAGAGGGAGCAGAAGCCAAG 60.393 60.000 0.00 0.00 43.56 3.61
2408 3067 3.636153 ACATTTAGGAACAGAGGGAGC 57.364 47.619 0.00 0.00 0.00 4.70
2409 3068 5.182001 CACAAACATTTAGGAACAGAGGGAG 59.818 44.000 0.00 0.00 0.00 4.30
2410 3069 5.070001 CACAAACATTTAGGAACAGAGGGA 58.930 41.667 0.00 0.00 0.00 4.20
2411 3070 4.827284 ACACAAACATTTAGGAACAGAGGG 59.173 41.667 0.00 0.00 0.00 4.30
2412 3071 6.391227 AACACAAACATTTAGGAACAGAGG 57.609 37.500 0.00 0.00 0.00 3.69
2413 3072 7.707104 AGAAACACAAACATTTAGGAACAGAG 58.293 34.615 0.00 0.00 0.00 3.35
2414 3073 7.639113 AGAAACACAAACATTTAGGAACAGA 57.361 32.000 0.00 0.00 0.00 3.41
2415 3074 8.836413 TCTAGAAACACAAACATTTAGGAACAG 58.164 33.333 0.00 0.00 0.00 3.16
2416 3075 8.740123 TCTAGAAACACAAACATTTAGGAACA 57.260 30.769 0.00 0.00 0.00 3.18
2417 3076 9.052759 TCTCTAGAAACACAAACATTTAGGAAC 57.947 33.333 0.00 0.00 0.00 3.62
2418 3077 9.793259 ATCTCTAGAAACACAAACATTTAGGAA 57.207 29.630 0.00 0.00 0.00 3.36
2419 3078 9.793259 AATCTCTAGAAACACAAACATTTAGGA 57.207 29.630 0.00 0.00 0.00 2.94
2426 3085 9.734620 CATTTGAAATCTCTAGAAACACAAACA 57.265 29.630 11.24 0.00 0.00 2.83
2427 3086 9.185192 CCATTTGAAATCTCTAGAAACACAAAC 57.815 33.333 11.24 0.00 0.00 2.93
2428 3087 9.130661 TCCATTTGAAATCTCTAGAAACACAAA 57.869 29.630 0.00 4.41 0.00 2.83
2429 3088 8.567948 GTCCATTTGAAATCTCTAGAAACACAA 58.432 33.333 0.00 0.00 0.00 3.33
2430 3089 7.939039 AGTCCATTTGAAATCTCTAGAAACACA 59.061 33.333 0.00 0.00 0.00 3.72
2431 3090 8.233190 CAGTCCATTTGAAATCTCTAGAAACAC 58.767 37.037 0.00 0.00 0.00 3.32
2432 3091 7.094634 GCAGTCCATTTGAAATCTCTAGAAACA 60.095 37.037 0.00 0.00 0.00 2.83
2433 3092 7.247019 GCAGTCCATTTGAAATCTCTAGAAAC 58.753 38.462 0.00 0.00 0.00 2.78
2434 3093 6.375455 GGCAGTCCATTTGAAATCTCTAGAAA 59.625 38.462 0.00 0.00 0.00 2.52
2435 3094 5.882557 GGCAGTCCATTTGAAATCTCTAGAA 59.117 40.000 0.00 0.00 0.00 2.10
2436 3095 5.045651 TGGCAGTCCATTTGAAATCTCTAGA 60.046 40.000 0.00 0.00 37.47 2.43
2437 3096 5.065731 GTGGCAGTCCATTTGAAATCTCTAG 59.934 44.000 0.00 0.00 45.62 2.43
2438 3097 4.943705 GTGGCAGTCCATTTGAAATCTCTA 59.056 41.667 0.00 0.00 45.62 2.43
2439 3098 3.760684 GTGGCAGTCCATTTGAAATCTCT 59.239 43.478 0.00 0.00 45.62 3.10
2440 3099 3.507233 TGTGGCAGTCCATTTGAAATCTC 59.493 43.478 0.00 0.00 45.62 2.75
2441 3100 3.499338 TGTGGCAGTCCATTTGAAATCT 58.501 40.909 0.00 0.00 45.62 2.40
2442 3101 3.940209 TGTGGCAGTCCATTTGAAATC 57.060 42.857 0.00 0.00 45.62 2.17
2443 3102 5.163385 CCATATGTGGCAGTCCATTTGAAAT 60.163 40.000 1.24 0.00 45.62 2.17
2444 3103 4.160065 CCATATGTGGCAGTCCATTTGAAA 59.840 41.667 1.24 0.00 45.62 2.69
2445 3104 3.700539 CCATATGTGGCAGTCCATTTGAA 59.299 43.478 1.24 0.00 45.62 2.69
2446 3105 3.053768 TCCATATGTGGCAGTCCATTTGA 60.054 43.478 3.06 0.00 45.62 2.69
2447 3106 3.289836 TCCATATGTGGCAGTCCATTTG 58.710 45.455 3.06 0.00 45.62 2.32
2448 3107 3.668141 TCCATATGTGGCAGTCCATTT 57.332 42.857 3.06 0.00 45.62 2.32
2449 3108 3.117398 ACATCCATATGTGGCAGTCCATT 60.117 43.478 3.06 0.00 44.79 3.16
2450 3109 2.444388 ACATCCATATGTGGCAGTCCAT 59.556 45.455 3.06 0.00 44.79 3.41
2451 3110 1.845791 ACATCCATATGTGGCAGTCCA 59.154 47.619 3.06 0.00 44.79 4.02
2452 3111 2.645838 ACATCCATATGTGGCAGTCC 57.354 50.000 3.06 0.00 44.79 3.85
2453 3112 7.923344 GTCTATATACATCCATATGTGGCAGTC 59.077 40.741 3.06 0.00 45.99 3.51
2454 3113 7.400052 TGTCTATATACATCCATATGTGGCAGT 59.600 37.037 3.06 7.20 45.99 4.40
2455 3114 7.785033 TGTCTATATACATCCATATGTGGCAG 58.215 38.462 3.06 1.11 45.99 4.85
2456 3115 7.732222 TGTCTATATACATCCATATGTGGCA 57.268 36.000 3.06 0.00 45.99 4.92
2490 3149 6.148480 ACAGAGCAAAATGAGTGAATCTACAC 59.852 38.462 0.00 0.00 40.60 2.90
2491 3150 6.233434 ACAGAGCAAAATGAGTGAATCTACA 58.767 36.000 0.00 0.00 0.00 2.74
2492 3151 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
2493 3152 8.043113 ACATACAGAGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
2494 3153 6.883217 ACATACAGAGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
2495 3154 7.081526 ACATACAGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
2496 3155 7.281774 CCTACATACAGAGCAAAATGAGTGAAT 59.718 37.037 0.00 0.00 0.00 2.57
2497 3156 6.595326 CCTACATACAGAGCAAAATGAGTGAA 59.405 38.462 0.00 0.00 0.00 3.18
2498 3157 6.108687 CCTACATACAGAGCAAAATGAGTGA 58.891 40.000 0.00 0.00 0.00 3.41
2499 3158 5.220739 GCCTACATACAGAGCAAAATGAGTG 60.221 44.000 0.00 0.00 0.00 3.51
2500 3159 4.878397 GCCTACATACAGAGCAAAATGAGT 59.122 41.667 0.00 0.00 0.00 3.41
2501 3160 4.877823 TGCCTACATACAGAGCAAAATGAG 59.122 41.667 0.00 0.00 0.00 2.90
2502 3161 4.635765 GTGCCTACATACAGAGCAAAATGA 59.364 41.667 0.00 0.00 34.79 2.57
2503 3162 4.637534 AGTGCCTACATACAGAGCAAAATG 59.362 41.667 0.00 0.00 34.79 2.32
2504 3163 4.848357 AGTGCCTACATACAGAGCAAAAT 58.152 39.130 0.00 0.00 34.79 1.82
2505 3164 4.286297 AGTGCCTACATACAGAGCAAAA 57.714 40.909 0.00 0.00 34.79 2.44
2506 3165 3.981071 AGTGCCTACATACAGAGCAAA 57.019 42.857 0.00 0.00 34.79 3.68
2507 3166 3.007940 ACAAGTGCCTACATACAGAGCAA 59.992 43.478 0.00 0.00 34.79 3.91
2508 3167 2.567169 ACAAGTGCCTACATACAGAGCA 59.433 45.455 0.00 0.00 0.00 4.26
2509 3168 3.252974 ACAAGTGCCTACATACAGAGC 57.747 47.619 0.00 0.00 0.00 4.09
2510 3169 4.820897 TCAACAAGTGCCTACATACAGAG 58.179 43.478 0.00 0.00 0.00 3.35
2511 3170 4.882842 TCAACAAGTGCCTACATACAGA 57.117 40.909 0.00 0.00 0.00 3.41
2512 3171 5.940192 TTTCAACAAGTGCCTACATACAG 57.060 39.130 0.00 0.00 0.00 2.74
2513 3172 6.892658 AATTTCAACAAGTGCCTACATACA 57.107 33.333 0.00 0.00 0.00 2.29
2514 3173 7.593825 AGAAATTTCAACAAGTGCCTACATAC 58.406 34.615 19.99 0.00 0.00 2.39
2515 3174 7.759489 AGAAATTTCAACAAGTGCCTACATA 57.241 32.000 19.99 0.00 0.00 2.29
2516 3175 6.655078 AGAAATTTCAACAAGTGCCTACAT 57.345 33.333 19.99 0.00 0.00 2.29
2517 3176 6.995686 TCTAGAAATTTCAACAAGTGCCTACA 59.004 34.615 19.99 0.00 0.00 2.74
2518 3177 7.435068 TCTAGAAATTTCAACAAGTGCCTAC 57.565 36.000 19.99 0.00 0.00 3.18
2519 3178 8.458573 TTTCTAGAAATTTCAACAAGTGCCTA 57.541 30.769 19.99 0.00 0.00 3.93
2520 3179 6.959639 TTCTAGAAATTTCAACAAGTGCCT 57.040 33.333 19.99 0.00 0.00 4.75
2521 3180 7.379797 GTCTTTCTAGAAATTTCAACAAGTGCC 59.620 37.037 18.02 6.09 30.65 5.01
2522 3181 7.915397 TGTCTTTCTAGAAATTTCAACAAGTGC 59.085 33.333 18.02 12.32 30.65 4.40
2523 3182 9.787532 TTGTCTTTCTAGAAATTTCAACAAGTG 57.212 29.630 18.02 2.79 30.65 3.16
2536 3195 9.595823 CGTCCCTAAATATTTGTCTTTCTAGAA 57.404 33.333 11.05 0.00 30.65 2.10
2537 3196 8.202137 CCGTCCCTAAATATTTGTCTTTCTAGA 58.798 37.037 11.05 0.00 0.00 2.43
2538 3197 8.202137 TCCGTCCCTAAATATTTGTCTTTCTAG 58.798 37.037 11.05 0.00 0.00 2.43
2539 3198 8.081517 TCCGTCCCTAAATATTTGTCTTTCTA 57.918 34.615 11.05 0.00 0.00 2.10
2540 3199 6.954232 TCCGTCCCTAAATATTTGTCTTTCT 58.046 36.000 11.05 0.00 0.00 2.52
2541 3200 6.260271 CCTCCGTCCCTAAATATTTGTCTTTC 59.740 42.308 11.05 0.00 0.00 2.62
2542 3201 6.069847 TCCTCCGTCCCTAAATATTTGTCTTT 60.070 38.462 11.05 0.00 0.00 2.52
2543 3202 5.427481 TCCTCCGTCCCTAAATATTTGTCTT 59.573 40.000 11.05 0.00 0.00 3.01
2544 3203 4.966805 TCCTCCGTCCCTAAATATTTGTCT 59.033 41.667 11.05 0.00 0.00 3.41
2545 3204 5.286267 TCCTCCGTCCCTAAATATTTGTC 57.714 43.478 11.05 0.00 0.00 3.18
2546 3205 5.191124 ACTTCCTCCGTCCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2547 3206 5.681639 ACTTCCTCCGTCCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2548 3207 5.970501 ACTTCCTCCGTCCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2549 3208 6.379579 TCTACTTCCTCCGTCCCTAAATATT 58.620 40.000 0.00 0.00 0.00 1.28
2550 3209 5.961897 TCTACTTCCTCCGTCCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
2551 3210 5.393068 TCTACTTCCTCCGTCCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
2552 3211 4.261411 TCTACTTCCTCCGTCCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
2553 3212 3.744940 TCTACTTCCTCCGTCCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
2554 3213 3.967467 ATCTACTTCCTCCGTCCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
2555 3214 5.595814 AATATCTACTTCCTCCGTCCCTA 57.404 43.478 0.00 0.00 0.00 3.53
2556 3215 4.472690 AATATCTACTTCCTCCGTCCCT 57.527 45.455 0.00 0.00 0.00 4.20
2557 3216 5.715753 ACATAATATCTACTTCCTCCGTCCC 59.284 44.000 0.00 0.00 0.00 4.46
2558 3217 6.837471 ACATAATATCTACTTCCTCCGTCC 57.163 41.667 0.00 0.00 0.00 4.79
2559 3218 9.843334 CTAAACATAATATCTACTTCCTCCGTC 57.157 37.037 0.00 0.00 0.00 4.79
2560 3219 9.584008 TCTAAACATAATATCTACTTCCTCCGT 57.416 33.333 0.00 0.00 0.00 4.69
2589 3248 6.208797 ACAAAAATGAACTTAAGAGGCCCTAC 59.791 38.462 10.09 0.00 0.00 3.18
2593 3252 5.920840 GTGACAAAAATGAACTTAAGAGGCC 59.079 40.000 10.09 0.00 0.00 5.19
2596 3255 7.645340 CCACAGTGACAAAAATGAACTTAAGAG 59.355 37.037 10.09 0.00 0.00 2.85
2598 3257 6.198966 GCCACAGTGACAAAAATGAACTTAAG 59.801 38.462 0.62 0.00 0.00 1.85
2611 3270 0.250295 GTAGCTGGCCACAGTGACAA 60.250 55.000 0.00 0.00 46.62 3.18
2612 3271 1.121407 AGTAGCTGGCCACAGTGACA 61.121 55.000 0.00 0.00 46.62 3.58
2621 3280 0.035458 ACAGTGTTGAGTAGCTGGCC 59.965 55.000 0.00 0.00 33.62 5.36
2630 3289 6.377327 AAACAGTATTGGAACAGTGTTGAG 57.623 37.500 14.57 0.00 42.39 3.02
2632 3291 7.032580 TGAAAAACAGTATTGGAACAGTGTTG 58.967 34.615 14.57 0.00 42.39 3.33
2685 3347 2.654749 TGAGCTGGACGATACAGTTG 57.345 50.000 0.00 0.00 38.22 3.16
2693 3355 1.554617 TGAAATGGATGAGCTGGACGA 59.445 47.619 0.00 0.00 0.00 4.20
2783 3446 5.064707 CCGAACTGAGAAAACAAGAACTTCA 59.935 40.000 0.00 0.00 0.00 3.02
2842 3516 2.351726 CGAAATGAACTTAAGAGGCCGG 59.648 50.000 10.09 0.00 0.00 6.13
2843 3517 3.000727 ACGAAATGAACTTAAGAGGCCG 58.999 45.455 10.09 5.78 0.00 6.13
2844 3518 5.372547 AAACGAAATGAACTTAAGAGGCC 57.627 39.130 10.09 0.00 0.00 5.19
2845 3519 8.791355 TTTAAAACGAAATGAACTTAAGAGGC 57.209 30.769 10.09 0.00 0.00 4.70
2890 3564 4.044336 TGCTGTTCAAATGGTTGAGTTG 57.956 40.909 0.00 0.00 44.49 3.16
3039 3713 6.538742 GCACTTGCTAATAGTGGACAAGATTA 59.461 38.462 14.12 0.00 42.53 1.75
3043 3717 4.606457 GCACTTGCTAATAGTGGACAAG 57.394 45.455 0.00 8.38 42.53 3.16
3140 3814 6.581171 ACCTCAGAAACAATTTCATCCTTC 57.419 37.500 4.25 0.00 42.10 3.46
3257 3931 5.371115 AATTGTCTGGGTAAATGTTGACG 57.629 39.130 0.00 0.00 0.00 4.35
3317 3991 0.320421 GTAAGCGAAGTGGCACCTCA 60.320 55.000 15.27 0.00 34.64 3.86
3476 4150 2.370281 TTCAGCGTGTCTCTTCATCC 57.630 50.000 0.00 0.00 0.00 3.51
3551 4228 2.509336 CGATCATATCGCCCCGCC 60.509 66.667 0.00 0.00 46.55 6.13
3567 4244 1.611519 TTGTAGGAACAAAAGGCCCG 58.388 50.000 0.00 0.00 42.60 6.13
3596 4273 8.225603 TCCAGGCAAATTATTCACTATTTCTC 57.774 34.615 0.00 0.00 0.00 2.87
3617 4294 0.858369 TACTAGGCCCCCTACTCCAG 59.142 60.000 0.00 0.00 34.61 3.86
3621 4298 3.046374 CAACAATACTAGGCCCCCTACT 58.954 50.000 0.00 0.00 34.61 2.57
3627 4304 2.423538 CAGCAACAACAATACTAGGCCC 59.576 50.000 0.00 0.00 0.00 5.80
3628 4305 3.081804 ACAGCAACAACAATACTAGGCC 58.918 45.455 0.00 0.00 0.00 5.19
3874 4560 1.000385 CATCAAAGCAAAAGGCCGTCA 60.000 47.619 0.00 0.00 46.50 4.35
3933 4619 4.079787 CAGTCAAATGGGGGAGATAAGGAA 60.080 45.833 0.00 0.00 0.00 3.36
3985 4671 1.478105 GGACCAAGACAATGATTGCCC 59.522 52.381 4.84 0.00 0.00 5.36
4044 4730 1.728323 TCAATGGGTCTCCACTGACA 58.272 50.000 0.00 0.00 43.47 3.58
4063 4749 4.523943 AGATTAAGCAGAGATCGCAGAGAT 59.476 41.667 0.00 0.00 43.63 2.75
4064 4750 3.888323 AGATTAAGCAGAGATCGCAGAGA 59.112 43.478 0.00 0.00 43.63 3.10
4065 4751 4.241590 AGATTAAGCAGAGATCGCAGAG 57.758 45.455 0.00 0.00 43.63 3.35
4066 4752 4.142071 ACAAGATTAAGCAGAGATCGCAGA 60.142 41.667 0.00 0.00 45.75 4.26
4067 4753 4.118410 ACAAGATTAAGCAGAGATCGCAG 58.882 43.478 0.00 0.00 0.00 5.18
4068 4754 4.128925 ACAAGATTAAGCAGAGATCGCA 57.871 40.909 0.00 0.00 0.00 5.10
4069 4755 5.476752 AAACAAGATTAAGCAGAGATCGC 57.523 39.130 0.00 0.00 0.00 4.58
4070 4756 5.007136 GGGAAACAAGATTAAGCAGAGATCG 59.993 44.000 0.00 0.00 0.00 3.69
4141 4837 1.927174 CAAAGATAGCCCTTGTCGACG 59.073 52.381 11.62 0.00 0.00 5.12
4172 4868 9.346725 CCTTCTCTTTCAACATTTTGTATTAGC 57.653 33.333 0.00 0.00 34.02 3.09
4173 4869 9.846248 CCCTTCTCTTTCAACATTTTGTATTAG 57.154 33.333 0.00 0.00 34.02 1.73
4188 4884 1.528129 CACCAGTGCCCTTCTCTTTC 58.472 55.000 0.00 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.