Multiple sequence alignment - TraesCS7A01G013500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G013500 chr7A 100.000 3122 0 0 1 3122 6134554 6131433 0.000000e+00 5766.0
1 TraesCS7A01G013500 chr7A 95.664 761 30 2 793 1550 5615304 5614544 0.000000e+00 1219.0
2 TraesCS7A01G013500 chr7A 92.900 831 28 3 797 1625 6303059 6302258 0.000000e+00 1179.0
3 TraesCS7A01G013500 chr7A 98.466 652 10 0 1 652 5518311 5517660 0.000000e+00 1149.0
4 TraesCS7A01G013500 chr7A 91.216 592 38 6 1608 2195 5614546 5613965 0.000000e+00 793.0
5 TraesCS7A01G013500 chr7A 92.398 342 18 3 2249 2587 5613863 5613527 6.060000e-132 481.0
6 TraesCS7A01G013500 chr7A 86.375 389 42 10 1808 2190 4898625 4898242 6.230000e-112 414.0
7 TraesCS7A01G013500 chr7A 97.596 208 5 0 2820 3027 5001598 5001391 1.060000e-94 357.0
8 TraesCS7A01G013500 chr7A 97.596 208 5 0 2820 3027 5612043 5611836 1.060000e-94 357.0
9 TraesCS7A01G013500 chr7A 97.596 208 5 0 2820 3027 5746842 5747049 1.060000e-94 357.0
10 TraesCS7A01G013500 chr7A 98.519 135 2 0 660 794 5615486 5615352 4.020000e-59 239.0
11 TraesCS7A01G013500 chr7A 98.519 135 2 0 660 794 6303245 6303111 4.020000e-59 239.0
12 TraesCS7A01G013500 chr7A 87.940 199 20 4 2820 3016 5024004 5023808 6.730000e-57 231.0
13 TraesCS7A01G013500 chr7A 77.384 451 54 26 943 1371 6304025 6303601 1.130000e-54 224.0
14 TraesCS7A01G013500 chr7A 87.571 177 20 2 2820 2995 5772684 5772859 1.470000e-48 204.0
15 TraesCS7A01G013500 chr7A 97.115 104 2 1 3019 3122 118619669 118619567 1.150000e-39 174.0
16 TraesCS7A01G013500 chr7A 81.910 199 29 4 2537 2733 4991196 4991003 8.960000e-36 161.0
17 TraesCS7A01G013500 chr7A 98.571 70 1 0 660 729 6279734 6279665 1.180000e-24 124.0
18 TraesCS7A01G013500 chr7D 90.603 1809 91 25 660 2403 5036059 5034265 0.000000e+00 2326.0
19 TraesCS7A01G013500 chr7D 93.431 274 18 0 1 274 531205890 531205617 1.040000e-109 407.0
20 TraesCS7A01G013500 chr7D 90.127 314 28 2 1823 2136 4995798 4995488 3.750000e-109 405.0
21 TraesCS7A01G013500 chr7D 77.578 446 57 22 943 1371 5036803 5036384 2.420000e-56 230.0
22 TraesCS7A01G013500 chr7D 96.190 105 2 2 3018 3122 119967521 119967623 1.490000e-38 171.0
23 TraesCS7A01G013500 chr1D 97.283 368 10 0 285 652 102686112 102685745 2.640000e-175 625.0
24 TraesCS7A01G013500 chr1D 91.971 274 22 0 1 274 468291438 468291711 4.880000e-103 385.0
25 TraesCS7A01G013500 chr1D 97.959 98 2 0 3025 3122 302972305 302972208 1.490000e-38 171.0
26 TraesCS7A01G013500 chr1D 92.105 114 8 1 3009 3122 60244132 60244244 3.220000e-35 159.0
27 TraesCS7A01G013500 chr4D 97.521 363 9 0 290 652 36181673 36181311 3.420000e-174 621.0
28 TraesCS7A01G013500 chr4D 93.431 274 18 0 1 274 32487031 32487304 1.040000e-109 407.0
29 TraesCS7A01G013500 chr4D 91.971 274 22 0 1 274 111682040 111682313 4.880000e-103 385.0
30 TraesCS7A01G013500 chr4D 91.971 274 22 0 1 274 302525354 302525627 4.880000e-103 385.0
31 TraesCS7A01G013500 chr4D 91.971 274 22 0 1 274 371266394 371266121 4.880000e-103 385.0
32 TraesCS7A01G013500 chr4D 95.192 104 3 2 3019 3122 322923660 322923559 2.490000e-36 163.0
33 TraesCS7A01G013500 chr4D 93.519 108 6 1 3016 3122 4320317 4320210 3.220000e-35 159.0
34 TraesCS7A01G013500 chr4D 91.525 118 6 4 3007 3122 106762860 106762745 3.220000e-35 159.0
35 TraesCS7A01G013500 chr4D 92.105 114 8 1 3010 3122 188844496 188844383 3.220000e-35 159.0
36 TraesCS7A01G013500 chr1A 97.275 367 9 1 286 652 452401859 452402224 3.420000e-174 621.0
37 TraesCS7A01G013500 chr1A 97.011 368 11 0 285 652 254314854 254314487 1.230000e-173 619.0
38 TraesCS7A01G013500 chr1A 96.257 374 14 0 278 651 249141416 249141043 5.720000e-172 614.0
39 TraesCS7A01G013500 chr1A 97.059 102 3 0 3021 3122 32116837 32116938 4.140000e-39 172.0
40 TraesCS7A01G013500 chr1A 97.980 99 2 0 3024 3122 279810554 279810456 4.140000e-39 172.0
41 TraesCS7A01G013500 chr1A 97.980 99 2 0 3024 3122 339220150 339220248 4.140000e-39 172.0
42 TraesCS7A01G013500 chr1A 97.980 99 2 0 3024 3122 362259396 362259494 4.140000e-39 172.0
43 TraesCS7A01G013500 chr1A 96.154 104 3 1 3019 3122 460122230 460122128 5.350000e-38 169.0
44 TraesCS7A01G013500 chr1A 96.154 104 3 1 3019 3122 493115909 493115807 5.350000e-38 169.0
45 TraesCS7A01G013500 chr1A 96.117 103 2 2 3020 3122 559285892 559285792 1.930000e-37 167.0
46 TraesCS7A01G013500 chr1A 96.842 95 3 0 3028 3122 248193758 248193664 3.220000e-35 159.0
47 TraesCS7A01G013500 chr5B 96.524 374 11 1 290 663 488547444 488547815 4.420000e-173 617.0
48 TraesCS7A01G013500 chr5B 85.870 276 34 5 1868 2142 147431633 147431362 3.940000e-74 289.0
49 TraesCS7A01G013500 chr5B 98.000 100 2 0 3023 3122 658182523 658182622 1.150000e-39 174.0
50 TraesCS7A01G013500 chr5B 92.982 114 4 4 3009 3122 506771421 506771530 2.490000e-36 163.0
51 TraesCS7A01G013500 chr5B 92.222 90 7 0 660 749 147431487 147431398 9.090000e-26 128.0
52 TraesCS7A01G013500 chr2A 94.911 393 16 4 273 663 567751768 567751378 2.060000e-171 612.0
53 TraesCS7A01G013500 chr2A 95.778 379 12 2 285 663 314912343 314912717 2.660000e-170 608.0
54 TraesCS7A01G013500 chr2A 98.020 101 2 0 3022 3122 225263480 225263380 3.200000e-40 176.0
55 TraesCS7A01G013500 chr4A 88.060 335 36 3 1802 2136 738746782 738747112 8.120000e-106 394.0
56 TraesCS7A01G013500 chr4A 86.341 205 26 2 2820 3023 737844803 737845006 4.050000e-54 222.0
57 TraesCS7A01G013500 chr4A 92.982 114 7 1 3009 3122 243778935 243778823 6.930000e-37 165.0
58 TraesCS7A01G013500 chr5D 91.971 274 22 0 1 274 269079224 269079497 4.880000e-103 385.0
59 TraesCS7A01G013500 chr5D 83.333 276 40 6 1868 2142 135652117 135651847 1.860000e-62 250.0
60 TraesCS7A01G013500 chr3D 91.971 274 22 0 1 274 306629003 306628730 4.880000e-103 385.0
61 TraesCS7A01G013500 chr3D 96.154 104 4 0 3019 3122 23100895 23100998 1.490000e-38 171.0
62 TraesCS7A01G013500 chr3D 92.982 114 5 2 3009 3122 165835307 165835417 2.490000e-36 163.0
63 TraesCS7A01G013500 chrUn 87.571 177 20 2 2820 2995 463134484 463134659 1.470000e-48 204.0
64 TraesCS7A01G013500 chrUn 86.441 177 22 2 2820 2995 228697872 228698047 3.180000e-45 193.0
65 TraesCS7A01G013500 chrUn 98.969 97 1 0 3026 3122 300165809 300165713 1.150000e-39 174.0
66 TraesCS7A01G013500 chrUn 98.969 97 1 0 3026 3122 347303385 347303481 1.150000e-39 174.0
67 TraesCS7A01G013500 chrUn 97.938 97 2 0 3026 3122 56197675 56197579 5.350000e-38 169.0
68 TraesCS7A01G013500 chrUn 97.938 97 2 0 3026 3122 81490716 81490812 5.350000e-38 169.0
69 TraesCS7A01G013500 chrUn 97.917 96 2 0 3027 3122 3160893 3160798 1.930000e-37 167.0
70 TraesCS7A01G013500 chrUn 97.917 96 2 0 3027 3122 19278028 19277933 1.930000e-37 167.0
71 TraesCS7A01G013500 chrUn 97.917 96 2 0 3027 3122 56740193 56740098 1.930000e-37 167.0
72 TraesCS7A01G013500 chrUn 97.917 96 2 0 3027 3122 74731649 74731554 1.930000e-37 167.0
73 TraesCS7A01G013500 chrUn 97.917 96 2 0 3027 3122 81816746 81816841 1.930000e-37 167.0
74 TraesCS7A01G013500 chrUn 95.238 105 3 2 3018 3122 259820753 259820855 6.930000e-37 165.0
75 TraesCS7A01G013500 chrUn 95.238 105 3 2 3018 3122 273733122 273733020 6.930000e-37 165.0
76 TraesCS7A01G013500 chrUn 94.444 108 3 3 3017 3122 50138610 50138716 2.490000e-36 163.0
77 TraesCS7A01G013500 chrUn 94.444 108 3 3 3017 3122 50152161 50152267 2.490000e-36 163.0
78 TraesCS7A01G013500 chrUn 94.444 108 3 3 3017 3122 289908871 289908765 2.490000e-36 163.0
79 TraesCS7A01G013500 chrUn 94.444 108 3 3 3017 3122 301952593 301952487 2.490000e-36 163.0
80 TraesCS7A01G013500 chrUn 89.552 67 7 0 2820 2886 471496317 471496251 5.550000e-13 86.1
81 TraesCS7A01G013500 chr3A 98.039 102 2 0 3021 3122 630119356 630119457 8.900000e-41 178.0
82 TraesCS7A01G013500 chr3A 97.115 104 2 1 3020 3122 728862982 728862879 1.150000e-39 174.0
83 TraesCS7A01G013500 chr6A 98.980 98 1 0 3025 3122 324326514 324326417 3.200000e-40 176.0
84 TraesCS7A01G013500 chr6A 96.190 105 3 1 3018 3122 118278370 118278267 1.490000e-38 171.0
85 TraesCS7A01G013500 chr6A 89.231 130 11 2 2996 3122 474946930 474947059 3.220000e-35 159.0
86 TraesCS7A01G013500 chr6D 97.087 103 3 0 3020 3122 55956454 55956352 1.150000e-39 174.0
87 TraesCS7A01G013500 chr6D 97.959 98 2 0 3025 3122 378843168 378843071 1.490000e-38 171.0
88 TraesCS7A01G013500 chr6D 97.959 98 2 0 3025 3122 402181439 402181536 1.490000e-38 171.0
89 TraesCS7A01G013500 chr6D 97.030 101 2 1 3022 3122 181997044 181997143 5.350000e-38 169.0
90 TraesCS7A01G013500 chr6D 96.154 104 2 2 3019 3122 359149337 359149236 5.350000e-38 169.0
91 TraesCS7A01G013500 chr6D 95.283 106 4 1 3018 3122 139502094 139502199 1.930000e-37 167.0
92 TraesCS7A01G013500 chr6D 95.283 106 3 2 3018 3122 355898795 355898899 1.930000e-37 167.0
93 TraesCS7A01G013500 chr7B 94.643 112 5 1 3011 3122 594675579 594675689 4.140000e-39 172.0
94 TraesCS7A01G013500 chr6B 96.190 105 4 0 3018 3122 416830354 416830458 4.140000e-39 172.0
95 TraesCS7A01G013500 chr4B 97.059 102 3 0 3021 3122 476456714 476456613 4.140000e-39 172.0
96 TraesCS7A01G013500 chr4B 94.545 110 4 2 3013 3122 426223953 426224060 5.350000e-38 169.0
97 TraesCS7A01G013500 chr4B 94.545 110 4 2 3013 3122 426269483 426269590 5.350000e-38 169.0
98 TraesCS7A01G013500 chr4B 94.495 109 4 2 3015 3122 149885428 149885321 1.930000e-37 167.0
99 TraesCS7A01G013500 chr2D 92.500 120 5 4 3005 3122 124596612 124596729 5.350000e-38 169.0
100 TraesCS7A01G013500 chr2B 91.667 120 8 2 3005 3122 557949888 557949769 6.930000e-37 165.0
101 TraesCS7A01G013500 chr5A 90.476 84 7 1 660 742 169301416 169301499 3.290000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G013500 chr7A 6131433 6134554 3121 True 5766.000000 5766 100.0000 1 3122 1 chr7A.!!$R6 3121
1 TraesCS7A01G013500 chr7A 5517660 5518311 651 True 1149.000000 1149 98.4660 1 652 1 chr7A.!!$R5 651
2 TraesCS7A01G013500 chr7A 5611836 5615486 3650 True 617.800000 1219 95.0786 660 3027 5 chr7A.!!$R9 2367
3 TraesCS7A01G013500 chr7A 6302258 6304025 1767 True 547.333333 1179 89.6010 660 1625 3 chr7A.!!$R10 965
4 TraesCS7A01G013500 chr7D 5034265 5036803 2538 True 1278.000000 2326 84.0905 660 2403 2 chr7D.!!$R3 1743

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 82 0.456221 CGATCCACTCTACCGCAACT 59.544 55.0 0.00 0.0 0.0 3.16 F
1678 1895 0.032130 TCAACTGCAGTGGAGACGTC 59.968 55.0 22.49 7.7 0.0 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1784 2002 0.528017 GTCGTGACATCTGGAGCTGA 59.472 55.0 0.0 0.0 0.0 4.26 R
3092 4623 0.036388 GCTCCCCTTGTGTCGAATCA 60.036 55.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 3.863086 ACCTTCCCCCATCTATCTACAG 58.137 50.000 0.00 0.00 0.00 2.74
81 82 0.456221 CGATCCACTCTACCGCAACT 59.544 55.000 0.00 0.00 0.00 3.16
82 83 1.534175 CGATCCACTCTACCGCAACTC 60.534 57.143 0.00 0.00 0.00 3.01
233 234 2.437200 TTTGCTTGTGGCTATGTTGC 57.563 45.000 0.00 0.00 42.39 4.17
524 525 8.275015 TGTCATTTGATAAACGGTATCACATT 57.725 30.769 9.80 0.00 34.07 2.71
578 579 4.583073 TCCGTTAGCTTAGCACTATGATCA 59.417 41.667 7.07 0.00 0.00 2.92
653 654 4.191544 TGAGATTATGCAACTCCCGAAAG 58.808 43.478 0.00 0.00 0.00 2.62
656 657 5.116882 AGATTATGCAACTCCCGAAAGTAC 58.883 41.667 0.00 0.00 0.00 2.73
658 659 0.675083 TGCAACTCCCGAAAGTACGA 59.325 50.000 0.00 0.00 35.09 3.43
773 895 8.055181 TGCAGAAGAATAGGTAAGAAATGGAAT 58.945 33.333 0.00 0.00 0.00 3.01
794 916 7.054124 GGAATAGAGATTCAACCAACCATGTA 58.946 38.462 0.00 0.00 42.95 2.29
795 917 7.721399 GGAATAGAGATTCAACCAACCATGTAT 59.279 37.037 0.00 0.00 42.95 2.29
810 981 9.757227 CCAACCATGTATGTTTTCTTCTTTTTA 57.243 29.630 0.00 0.00 0.00 1.52
842 1013 4.020573 AGTCTGTCGGTGTTATTTCCATGA 60.021 41.667 0.00 0.00 0.00 3.07
1068 1239 1.267574 ACCACGTCTGCCTCCATGAT 61.268 55.000 0.00 0.00 0.00 2.45
1073 1244 2.036475 ACGTCTGCCTCCATGATGATAC 59.964 50.000 0.00 0.00 0.00 2.24
1212 1383 7.445402 GGACAGGCAGAGCTTAATCAATAAATA 59.555 37.037 0.00 0.00 0.00 1.40
1213 1384 8.388484 ACAGGCAGAGCTTAATCAATAAATAG 57.612 34.615 0.00 0.00 0.00 1.73
1214 1385 7.446625 ACAGGCAGAGCTTAATCAATAAATAGG 59.553 37.037 0.00 0.00 0.00 2.57
1215 1386 7.663081 CAGGCAGAGCTTAATCAATAAATAGGA 59.337 37.037 0.00 0.00 0.00 2.94
1217 1388 8.293157 GGCAGAGCTTAATCAATAAATAGGAAC 58.707 37.037 0.00 0.00 0.00 3.62
1218 1389 9.061435 GCAGAGCTTAATCAATAAATAGGAACT 57.939 33.333 0.00 0.00 46.37 3.01
1255 1432 0.849094 TGTAGGGCTGGTTGGGGATT 60.849 55.000 0.00 0.00 0.00 3.01
1343 1520 4.080638 GGAGAGGTCCAACAATCTGAGAAT 60.081 45.833 0.00 0.00 43.31 2.40
1539 1747 2.095212 TGAGACCGCGATATGCTATGAC 60.095 50.000 8.23 0.00 43.27 3.06
1568 1776 7.652909 GTCCATCTCAATTTTGATTGTGTTTGA 59.347 33.333 0.00 0.00 36.46 2.69
1668 1881 6.446781 AATAGGTTCATTCATCAACTGCAG 57.553 37.500 13.48 13.48 0.00 4.41
1675 1892 2.462456 TCATCAACTGCAGTGGAGAC 57.538 50.000 27.32 0.00 30.34 3.36
1676 1893 1.073964 CATCAACTGCAGTGGAGACG 58.926 55.000 27.32 15.29 30.34 4.18
1677 1894 0.681733 ATCAACTGCAGTGGAGACGT 59.318 50.000 27.32 9.57 30.34 4.34
1678 1895 0.032130 TCAACTGCAGTGGAGACGTC 59.968 55.000 22.49 7.70 0.00 4.34
1679 1896 0.946221 CAACTGCAGTGGAGACGTCC 60.946 60.000 22.49 3.55 44.24 4.79
1730 1947 8.107095 TGAAGTTTAGCCCTTGTGTTTCTATAT 58.893 33.333 0.00 0.00 0.00 0.86
1771 1989 2.437651 TCAACCAACCAGAGATGTGTGA 59.562 45.455 0.00 0.00 0.00 3.58
1772 1990 3.072915 TCAACCAACCAGAGATGTGTGAT 59.927 43.478 0.00 0.00 0.00 3.06
1784 2002 9.145442 CCAGAGATGTGTGATATCTATCCATAT 57.855 37.037 3.98 0.00 35.14 1.78
1790 2010 8.005192 TGTGTGATATCTATCCATATCAGCTC 57.995 38.462 3.98 2.70 43.43 4.09
1800 2020 3.323115 TCCATATCAGCTCCAGATGTCAC 59.677 47.826 0.00 0.00 32.47 3.67
1821 2041 2.223066 CGACCTCGATACGCTATGATCC 60.223 54.545 0.00 0.00 43.02 3.36
1841 2061 7.272244 TGATCCGTCTATCTCAATTTTGCTTA 58.728 34.615 0.00 0.00 0.00 3.09
1853 2073 7.178983 TCTCAATTTTGCTTATGTTTGGAGGAT 59.821 33.333 0.00 0.00 0.00 3.24
1854 2074 8.359875 TCAATTTTGCTTATGTTTGGAGGATA 57.640 30.769 0.00 0.00 0.00 2.59
1885 2105 2.341846 ACCTTTGTTCTTTCGGCTGA 57.658 45.000 0.00 0.00 0.00 4.26
1889 2109 3.365364 CCTTTGTTCTTTCGGCTGATGTC 60.365 47.826 0.00 0.00 0.00 3.06
2015 2235 1.069703 CATCTATTGCCGTGATTGCCG 60.070 52.381 0.00 0.00 0.00 5.69
2037 2257 0.617820 AGGTGCTCGGGTGGAAGTAT 60.618 55.000 0.00 0.00 0.00 2.12
2043 2263 2.656002 CTCGGGTGGAAGTATGAGAGA 58.344 52.381 0.00 0.00 0.00 3.10
2112 2332 0.627451 AGGCCAAGATCATGCAGGAA 59.373 50.000 4.62 0.00 0.00 3.36
2132 2352 5.048294 AGGAAAATTGGTAGGCAAGTAAACG 60.048 40.000 0.00 0.00 0.00 3.60
2143 2363 6.002062 AGGCAAGTAAACGAAAGATTCAAG 57.998 37.500 0.00 0.00 0.00 3.02
2146 2366 6.915843 GGCAAGTAAACGAAAGATTCAAGAAA 59.084 34.615 0.00 0.00 0.00 2.52
2157 2377 5.733620 AGATTCAAGAAACAATGTGCCAT 57.266 34.783 0.00 0.00 0.00 4.40
2169 2389 0.394762 TGTGCCATCCAGAATGCTCC 60.395 55.000 0.00 0.00 33.71 4.70
2202 2449 3.668447 ACATAGCTGTCTGTTGGTCTTG 58.332 45.455 0.00 0.00 0.00 3.02
2208 2455 2.285083 TGTCTGTTGGTCTTGTTTCCG 58.715 47.619 0.00 0.00 0.00 4.30
2232 2479 5.293079 GTGCCATTTGTAATTTGTTGTGTGT 59.707 36.000 0.00 0.00 0.00 3.72
2233 2480 6.477033 GTGCCATTTGTAATTTGTTGTGTGTA 59.523 34.615 0.00 0.00 0.00 2.90
2239 2486 8.500753 TTTGTAATTTGTTGTGTGTAGAGACT 57.499 30.769 0.00 0.00 0.00 3.24
2312 2583 7.333174 GTGTGGTTGTATTTCCCCAATTTTATG 59.667 37.037 0.00 0.00 0.00 1.90
2370 2650 1.617357 GGTCGGTACCTTGTTCAGACT 59.383 52.381 10.90 0.00 43.08 3.24
2412 2692 3.256383 CCAACAAACAGATGGCTCATGAA 59.744 43.478 0.00 0.00 33.04 2.57
2415 2695 5.733620 ACAAACAGATGGCTCATGAAAAT 57.266 34.783 0.00 0.00 0.00 1.82
2416 2696 6.839124 ACAAACAGATGGCTCATGAAAATA 57.161 33.333 0.00 0.00 0.00 1.40
2417 2697 7.230849 ACAAACAGATGGCTCATGAAAATAA 57.769 32.000 0.00 0.00 0.00 1.40
2418 2698 7.318141 ACAAACAGATGGCTCATGAAAATAAG 58.682 34.615 0.00 0.00 0.00 1.73
2419 2699 5.511234 ACAGATGGCTCATGAAAATAAGC 57.489 39.130 0.00 0.00 0.00 3.09
2420 2700 4.951715 ACAGATGGCTCATGAAAATAAGCA 59.048 37.500 0.00 0.00 36.47 3.91
2421 2701 5.419788 ACAGATGGCTCATGAAAATAAGCAA 59.580 36.000 0.00 0.00 36.47 3.91
2437 2717 2.671596 AGCAACACAACACAAACACAC 58.328 42.857 0.00 0.00 0.00 3.82
2444 2724 3.128415 CACAACACAAACACACTCATCCA 59.872 43.478 0.00 0.00 0.00 3.41
2491 2771 4.944962 TTTCATGGCAATAGTCGTTCTG 57.055 40.909 0.00 0.00 0.00 3.02
2495 2775 2.412870 TGGCAATAGTCGTTCTGTGTG 58.587 47.619 0.00 0.00 0.00 3.82
2509 2789 3.261580 TCTGTGTGAATGGTATGAAGCG 58.738 45.455 0.00 0.00 0.00 4.68
2522 2802 5.419788 TGGTATGAAGCGGTTTCTAGAGTAA 59.580 40.000 0.00 0.00 36.71 2.24
2554 2834 5.359756 AGCTTTGAATTTTTGTTCCAGGAC 58.640 37.500 0.00 0.00 0.00 3.85
2562 2842 2.358322 TTGTTCCAGGACTTTGACCC 57.642 50.000 0.00 0.00 0.00 4.46
2566 2846 1.529744 TCCAGGACTTTGACCCCTTT 58.470 50.000 0.00 0.00 0.00 3.11
2587 2867 6.316390 CCTTTGGTAATTAAGTGTAGCTCCAG 59.684 42.308 0.00 0.00 0.00 3.86
2589 2869 5.974108 TGGTAATTAAGTGTAGCTCCAGTC 58.026 41.667 0.00 0.00 0.00 3.51
2590 2870 5.482526 TGGTAATTAAGTGTAGCTCCAGTCA 59.517 40.000 0.00 0.00 0.00 3.41
2591 2871 6.043411 GGTAATTAAGTGTAGCTCCAGTCAG 58.957 44.000 0.00 0.00 0.00 3.51
2598 2878 4.613929 GCTCCAGTCAGCTGAAGG 57.386 61.111 20.19 22.52 45.28 3.46
2599 2879 1.978473 GCTCCAGTCAGCTGAAGGA 59.022 57.895 28.08 28.08 45.28 3.36
2600 2880 0.322975 GCTCCAGTCAGCTGAAGGAA 59.677 55.000 29.03 18.04 45.28 3.36
2601 2881 1.065564 GCTCCAGTCAGCTGAAGGAAT 60.066 52.381 29.03 9.82 45.28 3.01
2602 2882 2.617532 GCTCCAGTCAGCTGAAGGAATT 60.618 50.000 29.03 8.02 45.28 2.17
2603 2883 3.008330 CTCCAGTCAGCTGAAGGAATTG 58.992 50.000 29.03 18.99 45.28 2.32
2605 2885 3.072915 TCCAGTCAGCTGAAGGAATTGAA 59.927 43.478 27.99 11.38 45.28 2.69
2606 2886 3.822735 CCAGTCAGCTGAAGGAATTGAAA 59.177 43.478 25.14 0.00 45.28 2.69
2608 2888 5.649395 CCAGTCAGCTGAAGGAATTGAAATA 59.351 40.000 25.14 0.00 45.28 1.40
2611 2891 8.896744 CAGTCAGCTGAAGGAATTGAAATATAA 58.103 33.333 20.19 0.00 45.28 0.98
2612 2892 9.638176 AGTCAGCTGAAGGAATTGAAATATAAT 57.362 29.630 20.19 0.00 0.00 1.28
2638 2918 8.752766 AAATATGTGAGCATGCAAAATATAGC 57.247 30.769 21.98 0.00 36.58 2.97
2639 2919 5.777850 ATGTGAGCATGCAAAATATAGCA 57.222 34.783 21.98 5.67 45.92 3.49
2641 2921 5.963594 TGTGAGCATGCAAAATATAGCAAA 58.036 33.333 21.98 0.00 44.88 3.68
2642 2922 6.575267 TGTGAGCATGCAAAATATAGCAAAT 58.425 32.000 21.98 0.00 44.88 2.32
2643 2923 7.714703 TGTGAGCATGCAAAATATAGCAAATA 58.285 30.769 21.98 0.00 44.88 1.40
2644 2924 8.196103 TGTGAGCATGCAAAATATAGCAAATAA 58.804 29.630 21.98 0.00 44.88 1.40
2645 2925 8.482429 GTGAGCATGCAAAATATAGCAAATAAC 58.518 33.333 21.98 0.00 44.88 1.89
2646 2926 8.196103 TGAGCATGCAAAATATAGCAAATAACA 58.804 29.630 21.98 0.00 44.88 2.41
2647 2927 8.945481 AGCATGCAAAATATAGCAAATAACAA 57.055 26.923 21.98 0.00 44.88 2.83
2648 2928 9.550406 AGCATGCAAAATATAGCAAATAACAAT 57.450 25.926 21.98 0.00 44.88 2.71
2649 2929 9.801714 GCATGCAAAATATAGCAAATAACAATC 57.198 29.630 14.21 0.00 44.88 2.67
2652 2932 9.748708 TGCAAAATATAGCAAATAACAATCCTC 57.251 29.630 0.00 0.00 37.90 3.71
2653 2933 9.748708 GCAAAATATAGCAAATAACAATCCTCA 57.251 29.630 0.00 0.00 0.00 3.86
2659 2939 8.929260 ATAGCAAATAACAATCCTCATGATGA 57.071 30.769 2.98 2.98 32.68 2.92
2662 2942 6.866770 GCAAATAACAATCCTCATGATGATGG 59.133 38.462 13.45 12.92 32.68 3.51
2664 2944 9.070179 CAAATAACAATCCTCATGATGATGGTA 57.930 33.333 18.20 13.10 32.68 3.25
2665 2945 9.818270 AAATAACAATCCTCATGATGATGGTAT 57.182 29.630 18.20 14.35 29.24 2.73
2666 2946 8.803397 ATAACAATCCTCATGATGATGGTATG 57.197 34.615 18.20 12.87 27.71 2.39
2667 2947 6.196918 ACAATCCTCATGATGATGGTATGT 57.803 37.500 16.84 12.68 32.68 2.29
2670 2950 5.892524 TCCTCATGATGATGGTATGTCAA 57.107 39.130 0.00 0.00 0.00 3.18
2671 2951 6.251255 TCCTCATGATGATGGTATGTCAAA 57.749 37.500 0.00 0.00 0.00 2.69
2673 2953 7.976712 TCCTCATGATGATGGTATGTCAAATA 58.023 34.615 0.00 0.00 0.00 1.40
2674 2954 8.098912 TCCTCATGATGATGGTATGTCAAATAG 58.901 37.037 0.00 0.00 0.00 1.73
2676 2956 7.455891 TCATGATGATGGTATGTCAAATAGCT 58.544 34.615 0.00 0.00 0.00 3.32
2677 2957 8.596293 TCATGATGATGGTATGTCAAATAGCTA 58.404 33.333 0.00 0.00 0.00 3.32
2678 2958 8.663025 CATGATGATGGTATGTCAAATAGCTAC 58.337 37.037 0.00 0.00 0.00 3.58
2679 2959 7.966812 TGATGATGGTATGTCAAATAGCTACT 58.033 34.615 0.00 0.00 0.00 2.57
2680 2960 8.090831 TGATGATGGTATGTCAAATAGCTACTC 58.909 37.037 0.00 0.00 0.00 2.59
2681 2961 7.360113 TGATGGTATGTCAAATAGCTACTCA 57.640 36.000 0.00 0.00 0.00 3.41
2682 2962 7.791029 TGATGGTATGTCAAATAGCTACTCAA 58.209 34.615 0.00 0.00 0.00 3.02
2683 2963 7.928167 TGATGGTATGTCAAATAGCTACTCAAG 59.072 37.037 0.00 0.00 0.00 3.02
2684 2964 7.182817 TGGTATGTCAAATAGCTACTCAAGT 57.817 36.000 0.00 0.00 0.00 3.16
2685 2965 7.265673 TGGTATGTCAAATAGCTACTCAAGTC 58.734 38.462 0.00 0.00 0.00 3.01
2686 2966 6.702282 GGTATGTCAAATAGCTACTCAAGTCC 59.298 42.308 0.00 0.00 0.00 3.85
2687 2967 6.552445 ATGTCAAATAGCTACTCAAGTCCT 57.448 37.500 0.00 0.00 0.00 3.85
2688 2968 5.967088 TGTCAAATAGCTACTCAAGTCCTC 58.033 41.667 0.00 0.00 0.00 3.71
2689 2969 5.480422 TGTCAAATAGCTACTCAAGTCCTCA 59.520 40.000 0.00 0.00 0.00 3.86
2691 2971 5.480422 TCAAATAGCTACTCAAGTCCTCACA 59.520 40.000 0.00 0.00 0.00 3.58
2694 2974 1.896465 GCTACTCAAGTCCTCACACCT 59.104 52.381 0.00 0.00 0.00 4.00
2695 2975 3.090037 GCTACTCAAGTCCTCACACCTA 58.910 50.000 0.00 0.00 0.00 3.08
2697 2977 1.896465 ACTCAAGTCCTCACACCTAGC 59.104 52.381 0.00 0.00 0.00 3.42
2698 2978 1.895798 CTCAAGTCCTCACACCTAGCA 59.104 52.381 0.00 0.00 0.00 3.49
2699 2979 2.300152 CTCAAGTCCTCACACCTAGCAA 59.700 50.000 0.00 0.00 0.00 3.91
2700 2980 2.037251 TCAAGTCCTCACACCTAGCAAC 59.963 50.000 0.00 0.00 0.00 4.17
2701 2981 1.717032 AGTCCTCACACCTAGCAACA 58.283 50.000 0.00 0.00 0.00 3.33
2702 2982 1.620819 AGTCCTCACACCTAGCAACAG 59.379 52.381 0.00 0.00 0.00 3.16
2704 2984 2.037251 GTCCTCACACCTAGCAACAGAA 59.963 50.000 0.00 0.00 0.00 3.02
2705 2985 2.703536 TCCTCACACCTAGCAACAGAAA 59.296 45.455 0.00 0.00 0.00 2.52
2706 2986 3.070018 CCTCACACCTAGCAACAGAAAG 58.930 50.000 0.00 0.00 0.00 2.62
2707 2987 3.244215 CCTCACACCTAGCAACAGAAAGA 60.244 47.826 0.00 0.00 0.00 2.52
2708 2988 3.993081 CTCACACCTAGCAACAGAAAGAG 59.007 47.826 0.00 0.00 0.00 2.85
2711 2991 4.576463 CACACCTAGCAACAGAAAGAGTTT 59.424 41.667 0.00 0.00 0.00 2.66
2712 2992 4.576463 ACACCTAGCAACAGAAAGAGTTTG 59.424 41.667 0.00 0.00 0.00 2.93
2713 2993 3.565902 ACCTAGCAACAGAAAGAGTTTGC 59.434 43.478 0.00 0.00 0.00 3.68
2714 2994 3.565482 CCTAGCAACAGAAAGAGTTTGCA 59.435 43.478 7.80 0.00 0.00 4.08
2716 2996 2.754552 AGCAACAGAAAGAGTTTGCACA 59.245 40.909 7.80 0.00 0.00 4.57
2718 2998 3.100817 CAACAGAAAGAGTTTGCACACG 58.899 45.455 0.00 0.00 0.00 4.49
2719 2999 2.356135 ACAGAAAGAGTTTGCACACGT 58.644 42.857 0.00 0.00 0.00 4.49
2720 3000 3.527533 ACAGAAAGAGTTTGCACACGTA 58.472 40.909 0.00 0.00 0.00 3.57
2721 3001 3.555956 ACAGAAAGAGTTTGCACACGTAG 59.444 43.478 0.00 0.00 0.00 3.51
2723 3003 4.270084 CAGAAAGAGTTTGCACACGTAGAA 59.730 41.667 0.00 0.00 0.00 2.10
2724 3004 4.508124 AGAAAGAGTTTGCACACGTAGAAG 59.492 41.667 0.00 0.00 0.00 2.85
2725 3005 2.755650 AGAGTTTGCACACGTAGAAGG 58.244 47.619 0.00 0.00 0.00 3.46
2729 3009 3.942748 AGTTTGCACACGTAGAAGGAAAA 59.057 39.130 0.00 0.00 0.00 2.29
2730 3010 3.955771 TTGCACACGTAGAAGGAAAAC 57.044 42.857 0.00 0.00 0.00 2.43
2731 3011 2.907634 TGCACACGTAGAAGGAAAACA 58.092 42.857 0.00 0.00 0.00 2.83
2732 3012 3.271729 TGCACACGTAGAAGGAAAACAA 58.728 40.909 0.00 0.00 0.00 2.83
2733 3013 3.311322 TGCACACGTAGAAGGAAAACAAG 59.689 43.478 0.00 0.00 0.00 3.16
2735 3015 3.560068 CACACGTAGAAGGAAAACAAGCT 59.440 43.478 0.00 0.00 0.00 3.74
2736 3016 4.035208 CACACGTAGAAGGAAAACAAGCTT 59.965 41.667 0.00 0.00 0.00 3.74
2737 3017 4.638865 ACACGTAGAAGGAAAACAAGCTTT 59.361 37.500 0.00 0.00 0.00 3.51
2738 3018 5.818857 ACACGTAGAAGGAAAACAAGCTTTA 59.181 36.000 0.00 0.00 0.00 1.85
2740 3020 7.148205 ACACGTAGAAGGAAAACAAGCTTTAAA 60.148 33.333 0.00 0.00 0.00 1.52
2741 3021 7.376072 CACGTAGAAGGAAAACAAGCTTTAAAG 59.624 37.037 11.02 11.02 0.00 1.85
2742 3022 7.281549 ACGTAGAAGGAAAACAAGCTTTAAAGA 59.718 33.333 19.48 0.00 0.00 2.52
2744 3024 7.404671 AGAAGGAAAACAAGCTTTAAAGACA 57.595 32.000 19.48 0.00 0.00 3.41
2745 3025 7.836842 AGAAGGAAAACAAGCTTTAAAGACAA 58.163 30.769 19.48 0.00 0.00 3.18
2747 3027 6.042777 AGGAAAACAAGCTTTAAAGACAAGC 58.957 36.000 19.48 3.56 46.05 4.01
2777 3205 2.159254 TGGCAACAGAAAGAGTTTGCAC 60.159 45.455 7.40 0.00 46.17 4.57
2778 3206 2.159254 GGCAACAGAAAGAGTTTGCACA 60.159 45.455 7.40 0.00 0.00 4.57
2779 3207 2.854185 GCAACAGAAAGAGTTTGCACAC 59.146 45.455 0.00 0.00 0.00 3.82
2781 3209 2.627945 ACAGAAAGAGTTTGCACACGA 58.372 42.857 0.00 0.00 0.00 4.35
2783 3211 3.063997 ACAGAAAGAGTTTGCACACGAAG 59.936 43.478 0.00 0.00 0.00 3.79
2787 3215 5.406780 AGAAAGAGTTTGCACACGAAGATAG 59.593 40.000 0.00 0.00 0.00 2.08
2797 3225 4.796312 GCACACGAAGATAGAGAAGTTCTC 59.204 45.833 22.97 22.97 43.70 2.87
2813 3241 8.232913 AGAAGTTCTCTAGTAAAGATAGGCAG 57.767 38.462 0.00 0.00 32.41 4.85
2814 3242 6.399639 AGTTCTCTAGTAAAGATAGGCAGC 57.600 41.667 0.00 0.00 32.41 5.25
2815 3243 6.133356 AGTTCTCTAGTAAAGATAGGCAGCT 58.867 40.000 0.00 0.00 32.41 4.24
2817 3245 7.447238 AGTTCTCTAGTAAAGATAGGCAGCTAG 59.553 40.741 0.00 0.00 32.41 3.42
2818 3246 6.843752 TCTCTAGTAAAGATAGGCAGCTAGT 58.156 40.000 0.00 0.00 32.41 2.57
2847 4378 4.682021 AGGTGGGATTTCTCCAGAAAAT 57.318 40.909 5.86 0.00 45.81 1.82
2876 4407 5.263872 TGGTTTAGCCCCAGAAATCTTAA 57.736 39.130 0.00 0.00 36.04 1.85
2919 4450 1.710816 ATGGCAACCTTCCGGAAAAA 58.289 45.000 19.39 0.00 0.00 1.94
2929 4460 7.599171 CAACCTTCCGGAAAAACTATTATGTT 58.401 34.615 19.39 0.12 0.00 2.71
3027 4558 4.091549 ACATGAGAAAGCCAATGTCCATT 58.908 39.130 0.00 0.00 0.00 3.16
3028 4559 4.081862 ACATGAGAAAGCCAATGTCCATTG 60.082 41.667 12.10 12.10 45.77 2.82
3041 4572 4.927267 TGTCCATTGATAACCCAGAAGT 57.073 40.909 0.00 0.00 0.00 3.01
3042 4573 6.575244 ATGTCCATTGATAACCCAGAAGTA 57.425 37.500 0.00 0.00 0.00 2.24
3043 4574 6.575244 TGTCCATTGATAACCCAGAAGTAT 57.425 37.500 0.00 0.00 0.00 2.12
3044 4575 7.684317 TGTCCATTGATAACCCAGAAGTATA 57.316 36.000 0.00 0.00 0.00 1.47
3045 4576 7.735917 TGTCCATTGATAACCCAGAAGTATAG 58.264 38.462 0.00 0.00 0.00 1.31
3046 4577 7.162082 GTCCATTGATAACCCAGAAGTATAGG 58.838 42.308 0.00 0.00 0.00 2.57
3053 4584 1.550976 CCCAGAAGTATAGGGGATCGC 59.449 57.143 0.06 0.06 43.57 4.58
3054 4585 2.248248 CCAGAAGTATAGGGGATCGCA 58.752 52.381 12.32 0.00 0.00 5.10
3055 4586 2.632996 CCAGAAGTATAGGGGATCGCAA 59.367 50.000 12.32 0.00 0.00 4.85
3056 4587 3.555168 CCAGAAGTATAGGGGATCGCAAC 60.555 52.174 12.32 4.19 0.00 4.17
3057 4588 3.069586 CAGAAGTATAGGGGATCGCAACA 59.930 47.826 12.32 0.00 0.00 3.33
3058 4589 3.322254 AGAAGTATAGGGGATCGCAACAG 59.678 47.826 12.32 0.00 0.00 3.16
3059 4590 1.344763 AGTATAGGGGATCGCAACAGC 59.655 52.381 12.32 0.00 0.00 4.40
3060 4591 1.344763 GTATAGGGGATCGCAACAGCT 59.655 52.381 12.32 1.62 0.00 4.24
3061 4592 0.839946 ATAGGGGATCGCAACAGCTT 59.160 50.000 12.32 0.00 0.00 3.74
3062 4593 0.618458 TAGGGGATCGCAACAGCTTT 59.382 50.000 12.32 0.00 0.00 3.51
3063 4594 0.251341 AGGGGATCGCAACAGCTTTT 60.251 50.000 12.32 0.00 0.00 2.27
3064 4595 0.109132 GGGGATCGCAACAGCTTTTG 60.109 55.000 12.32 8.28 0.00 2.44
3065 4596 0.881118 GGGATCGCAACAGCTTTTGA 59.119 50.000 16.70 0.00 0.00 2.69
3066 4597 1.135575 GGGATCGCAACAGCTTTTGAG 60.136 52.381 16.70 13.12 0.00 3.02
3067 4598 1.135575 GGATCGCAACAGCTTTTGAGG 60.136 52.381 16.70 7.20 0.00 3.86
3068 4599 0.883833 ATCGCAACAGCTTTTGAGGG 59.116 50.000 16.70 4.82 0.00 4.30
3069 4600 0.465460 TCGCAACAGCTTTTGAGGGT 60.465 50.000 16.70 0.00 0.00 4.34
3070 4601 1.202710 TCGCAACAGCTTTTGAGGGTA 60.203 47.619 16.70 0.00 0.00 3.69
3071 4602 1.197721 CGCAACAGCTTTTGAGGGTAG 59.802 52.381 16.70 0.00 0.00 3.18
3072 4603 2.504367 GCAACAGCTTTTGAGGGTAGA 58.496 47.619 16.70 0.00 0.00 2.59
3073 4604 2.485814 GCAACAGCTTTTGAGGGTAGAG 59.514 50.000 16.70 0.00 0.00 2.43
3074 4605 3.744660 CAACAGCTTTTGAGGGTAGAGT 58.255 45.455 6.78 0.00 0.00 3.24
3075 4606 4.802918 GCAACAGCTTTTGAGGGTAGAGTA 60.803 45.833 16.70 0.00 0.00 2.59
3076 4607 5.491982 CAACAGCTTTTGAGGGTAGAGTAT 58.508 41.667 6.78 0.00 0.00 2.12
3077 4608 5.763876 ACAGCTTTTGAGGGTAGAGTATT 57.236 39.130 0.00 0.00 0.00 1.89
3078 4609 5.735766 ACAGCTTTTGAGGGTAGAGTATTC 58.264 41.667 0.00 0.00 0.00 1.75
3079 4610 5.248477 ACAGCTTTTGAGGGTAGAGTATTCA 59.752 40.000 0.00 0.00 0.00 2.57
3080 4611 6.173339 CAGCTTTTGAGGGTAGAGTATTCAA 58.827 40.000 0.00 0.00 0.00 2.69
3081 4612 6.092807 CAGCTTTTGAGGGTAGAGTATTCAAC 59.907 42.308 0.00 0.00 0.00 3.18
3082 4613 5.354513 GCTTTTGAGGGTAGAGTATTCAACC 59.645 44.000 0.00 0.00 0.00 3.77
3098 4629 9.801873 AGTATTCAACCCAAATTTATTGATTCG 57.198 29.630 10.73 0.00 31.45 3.34
3099 4630 9.796120 GTATTCAACCCAAATTTATTGATTCGA 57.204 29.630 10.73 0.00 31.45 3.71
3100 4631 8.702163 ATTCAACCCAAATTTATTGATTCGAC 57.298 30.769 10.73 0.00 31.45 4.20
3101 4632 7.220741 TCAACCCAAATTTATTGATTCGACA 57.779 32.000 7.33 0.00 0.00 4.35
3102 4633 7.087639 TCAACCCAAATTTATTGATTCGACAC 58.912 34.615 7.33 0.00 0.00 3.67
3103 4634 6.582677 ACCCAAATTTATTGATTCGACACA 57.417 33.333 0.00 0.00 0.00 3.72
3104 4635 6.987386 ACCCAAATTTATTGATTCGACACAA 58.013 32.000 6.03 6.03 0.00 3.33
3105 4636 7.090173 ACCCAAATTTATTGATTCGACACAAG 58.910 34.615 8.90 0.00 0.00 3.16
3106 4637 6.531240 CCCAAATTTATTGATTCGACACAAGG 59.469 38.462 8.90 3.91 0.00 3.61
3107 4638 6.531240 CCAAATTTATTGATTCGACACAAGGG 59.469 38.462 8.90 0.00 0.00 3.95
3108 4639 5.835113 ATTTATTGATTCGACACAAGGGG 57.165 39.130 8.90 0.00 0.00 4.79
3109 4640 4.561500 TTATTGATTCGACACAAGGGGA 57.438 40.909 8.90 0.00 0.00 4.81
3110 4641 2.472695 TTGATTCGACACAAGGGGAG 57.527 50.000 0.00 0.00 0.00 4.30
3111 4642 0.036388 TGATTCGACACAAGGGGAGC 60.036 55.000 0.00 0.00 0.00 4.70
3112 4643 0.744771 GATTCGACACAAGGGGAGCC 60.745 60.000 0.00 0.00 0.00 4.70
3113 4644 1.488705 ATTCGACACAAGGGGAGCCA 61.489 55.000 0.00 0.00 0.00 4.75
3114 4645 1.701031 TTCGACACAAGGGGAGCCAA 61.701 55.000 0.00 0.00 0.00 4.52
3115 4646 1.228124 CGACACAAGGGGAGCCAAA 60.228 57.895 0.00 0.00 0.00 3.28
3116 4647 1.237285 CGACACAAGGGGAGCCAAAG 61.237 60.000 0.00 0.00 0.00 2.77
3117 4648 0.110486 GACACAAGGGGAGCCAAAGA 59.890 55.000 0.00 0.00 0.00 2.52
3118 4649 0.555769 ACACAAGGGGAGCCAAAGAA 59.444 50.000 0.00 0.00 0.00 2.52
3119 4650 1.147817 ACACAAGGGGAGCCAAAGAAT 59.852 47.619 0.00 0.00 0.00 2.40
3120 4651 2.378547 ACACAAGGGGAGCCAAAGAATA 59.621 45.455 0.00 0.00 0.00 1.75
3121 4652 3.011708 ACACAAGGGGAGCCAAAGAATAT 59.988 43.478 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 1.141019 TTGCGGTAGAGTGGATCGC 59.859 57.895 0.00 0.00 45.60 4.58
81 82 2.490903 GTTCAAGTAGAGGGTACAGCGA 59.509 50.000 0.00 0.00 0.00 4.93
82 83 2.230508 TGTTCAAGTAGAGGGTACAGCG 59.769 50.000 0.00 0.00 0.00 5.18
190 191 7.636259 ATTAAACCAATCACAACAATTCACG 57.364 32.000 0.00 0.00 0.00 4.35
658 659 0.616111 ACTTCCATCCGAGCACCTCT 60.616 55.000 0.00 0.00 0.00 3.69
773 895 6.957631 ACATACATGGTTGGTTGAATCTCTA 58.042 36.000 0.00 0.00 0.00 2.43
810 981 2.433239 ACACCGACAGACTGGTAGTTTT 59.567 45.455 7.51 0.00 36.50 2.43
856 1027 8.519526 TGACCAAACAATGACTAATAACCATTC 58.480 33.333 0.00 0.00 0.00 2.67
1068 1239 3.904339 GGAAGGCCTTGGAGATAGTATCA 59.096 47.826 26.25 0.00 0.00 2.15
1073 1244 2.926778 CTGGAAGGCCTTGGAGATAG 57.073 55.000 26.25 7.72 34.31 2.08
1212 1383 9.830186 ACATATATTACTAGTCCATCAGTTCCT 57.170 33.333 0.00 0.00 0.00 3.36
1217 1388 8.634444 GCCCTACATATATTACTAGTCCATCAG 58.366 40.741 0.00 0.00 0.00 2.90
1218 1389 8.344546 AGCCCTACATATATTACTAGTCCATCA 58.655 37.037 0.00 0.00 0.00 3.07
1226 1403 6.442564 CCCAACCAGCCCTACATATATTACTA 59.557 42.308 0.00 0.00 0.00 1.82
1239 1416 2.626467 GGAATCCCCAACCAGCCCT 61.626 63.158 0.00 0.00 34.14 5.19
1255 1432 8.521176 GGATACTATTACTGATTTTAGCTCGGA 58.479 37.037 0.00 0.00 0.00 4.55
1343 1520 5.386958 AAAGTCAGCTACATAGACGTTCA 57.613 39.130 0.00 0.00 37.36 3.18
1539 1747 6.097356 CACAATCAAAATTGAGATGGACAGG 58.903 40.000 13.16 0.00 44.25 4.00
1582 1790 5.126384 GCAAAGGAGAGACAGTATCAGTAGT 59.874 44.000 0.00 0.00 0.00 2.73
1675 1892 4.695455 AGATTGTATTGTTGGACTTGGACG 59.305 41.667 0.00 0.00 0.00 4.79
1676 1893 5.705441 TCAGATTGTATTGTTGGACTTGGAC 59.295 40.000 0.00 0.00 0.00 4.02
1677 1894 5.875224 TCAGATTGTATTGTTGGACTTGGA 58.125 37.500 0.00 0.00 0.00 3.53
1678 1895 5.939883 TCTCAGATTGTATTGTTGGACTTGG 59.060 40.000 0.00 0.00 0.00 3.61
1679 1896 7.439157 TTCTCAGATTGTATTGTTGGACTTG 57.561 36.000 0.00 0.00 0.00 3.16
1680 1897 7.884877 TCATTCTCAGATTGTATTGTTGGACTT 59.115 33.333 0.00 0.00 0.00 3.01
1681 1898 7.397221 TCATTCTCAGATTGTATTGTTGGACT 58.603 34.615 0.00 0.00 0.00 3.85
1771 1989 8.011883 ACATCTGGAGCTGATATGGATAGATAT 58.988 37.037 0.00 0.00 0.00 1.63
1772 1990 7.360643 ACATCTGGAGCTGATATGGATAGATA 58.639 38.462 0.00 0.00 0.00 1.98
1784 2002 0.528017 GTCGTGACATCTGGAGCTGA 59.472 55.000 0.00 0.00 0.00 4.26
1790 2010 0.741326 ATCGAGGTCGTGACATCTGG 59.259 55.000 12.20 0.00 39.71 3.86
1800 2020 2.223066 GGATCATAGCGTATCGAGGTCG 60.223 54.545 0.00 0.00 41.45 4.79
1821 2041 9.003112 CAAACATAAGCAAAATTGAGATAGACG 57.997 33.333 0.00 0.00 0.00 4.18
1885 2105 1.424638 CCATTCCTCCCCTACGACAT 58.575 55.000 0.00 0.00 0.00 3.06
1889 2109 2.829592 GGCCATTCCTCCCCTACG 59.170 66.667 0.00 0.00 0.00 3.51
1999 2219 2.818487 CGCGGCAATCACGGCAATA 61.818 57.895 0.00 0.00 35.77 1.90
2037 2257 0.913205 ACTCCTCGTAGGCTCTCTCA 59.087 55.000 0.00 0.00 34.61 3.27
2043 2263 1.076632 CTGGGACTCCTCGTAGGCT 60.077 63.158 0.00 0.00 34.61 4.58
2112 2332 6.263617 TCTTTCGTTTACTTGCCTACCAATTT 59.736 34.615 0.00 0.00 31.91 1.82
2132 2352 5.984926 TGGCACATTGTTTCTTGAATCTTTC 59.015 36.000 0.00 0.00 0.00 2.62
2157 2377 4.225942 ACAAAGTCATAGGAGCATTCTGGA 59.774 41.667 0.00 0.00 0.00 3.86
2169 2389 7.261325 ACAGACAGCTATGTACAAAGTCATAG 58.739 38.462 0.00 0.00 43.43 2.23
2202 2449 4.747605 ACAAATTACAAATGGCACGGAAAC 59.252 37.500 0.00 0.00 0.00 2.78
2208 2455 5.293079 ACACACAACAAATTACAAATGGCAC 59.707 36.000 0.00 0.00 0.00 5.01
2412 2692 5.928839 TGTGTTTGTGTTGTGTTGCTTATTT 59.071 32.000 0.00 0.00 0.00 1.40
2415 2695 4.022762 AGTGTGTTTGTGTTGTGTTGCTTA 60.023 37.500 0.00 0.00 0.00 3.09
2416 2696 3.056304 GTGTGTTTGTGTTGTGTTGCTT 58.944 40.909 0.00 0.00 0.00 3.91
2417 2697 2.295909 AGTGTGTTTGTGTTGTGTTGCT 59.704 40.909 0.00 0.00 0.00 3.91
2418 2698 2.661195 GAGTGTGTTTGTGTTGTGTTGC 59.339 45.455 0.00 0.00 0.00 4.17
2419 2699 3.894920 TGAGTGTGTTTGTGTTGTGTTG 58.105 40.909 0.00 0.00 0.00 3.33
2420 2700 4.380444 GGATGAGTGTGTTTGTGTTGTGTT 60.380 41.667 0.00 0.00 0.00 3.32
2421 2701 3.128589 GGATGAGTGTGTTTGTGTTGTGT 59.871 43.478 0.00 0.00 0.00 3.72
2437 2717 2.838736 CCACTCGGGTATTTGGATGAG 58.161 52.381 0.00 0.00 0.00 2.90
2444 2724 3.009805 AGGTTAAAGCCACTCGGGTATTT 59.990 43.478 0.00 0.00 44.22 1.40
2491 2771 2.356135 ACCGCTTCATACCATTCACAC 58.644 47.619 0.00 0.00 0.00 3.82
2495 2775 5.357257 TCTAGAAACCGCTTCATACCATTC 58.643 41.667 0.00 0.00 36.40 2.67
2509 2789 8.270080 AGCTAAGCAAATTTACTCTAGAAACC 57.730 34.615 0.00 0.00 0.00 3.27
2522 2802 9.720667 GAACAAAAATTCAAAGCTAAGCAAATT 57.279 25.926 0.00 0.00 0.00 1.82
2544 2824 0.476771 GGGGTCAAAGTCCTGGAACA 59.523 55.000 0.00 0.00 0.00 3.18
2562 2842 6.177610 TGGAGCTACACTTAATTACCAAAGG 58.822 40.000 0.00 0.00 0.00 3.11
2566 2846 5.482526 TGACTGGAGCTACACTTAATTACCA 59.517 40.000 0.00 0.00 0.00 3.25
2581 2861 0.322975 TTCCTTCAGCTGACTGGAGC 59.677 55.000 26.79 0.00 46.88 4.70
2612 2892 9.844790 GCTATATTTTGCATGCTCACATATTTA 57.155 29.630 20.33 3.35 33.67 1.40
2613 2893 8.361889 TGCTATATTTTGCATGCTCACATATTT 58.638 29.630 20.33 2.41 33.67 1.40
2614 2894 7.888424 TGCTATATTTTGCATGCTCACATATT 58.112 30.769 20.33 0.00 33.67 1.28
2615 2895 7.457024 TGCTATATTTTGCATGCTCACATAT 57.543 32.000 20.33 15.85 33.67 1.78
2616 2896 6.880942 TGCTATATTTTGCATGCTCACATA 57.119 33.333 20.33 10.12 33.67 2.29
2617 2897 5.777850 TGCTATATTTTGCATGCTCACAT 57.222 34.783 20.33 8.21 36.79 3.21
2618 2898 5.579564 TTGCTATATTTTGCATGCTCACA 57.420 34.783 20.33 0.24 39.07 3.58
2619 2899 8.482429 GTTATTTGCTATATTTTGCATGCTCAC 58.518 33.333 20.33 0.00 39.07 3.51
2621 2901 8.578308 TGTTATTTGCTATATTTTGCATGCTC 57.422 30.769 20.33 0.00 39.07 4.26
2622 2902 8.945481 TTGTTATTTGCTATATTTTGCATGCT 57.055 26.923 20.33 0.00 39.07 3.79
2623 2903 9.801714 GATTGTTATTTGCTATATTTTGCATGC 57.198 29.630 11.82 11.82 39.07 4.06
2634 2914 8.929260 TCATCATGAGGATTGTTATTTGCTAT 57.071 30.769 5.84 0.00 32.57 2.97
2636 2916 7.255836 CCATCATCATGAGGATTGTTATTTGCT 60.256 37.037 19.77 0.00 32.57 3.91
2637 2917 6.866770 CCATCATCATGAGGATTGTTATTTGC 59.133 38.462 19.77 0.00 32.57 3.68
2638 2918 7.948357 ACCATCATCATGAGGATTGTTATTTG 58.052 34.615 19.77 8.08 32.57 2.32
2639 2919 9.818270 ATACCATCATCATGAGGATTGTTATTT 57.182 29.630 25.98 10.95 31.44 1.40
2641 2921 8.388589 ACATACCATCATCATGAGGATTGTTAT 58.611 33.333 25.98 16.57 31.44 1.89
2642 2922 7.748677 ACATACCATCATCATGAGGATTGTTA 58.251 34.615 25.98 15.34 31.44 2.41
2643 2923 6.607970 ACATACCATCATCATGAGGATTGTT 58.392 36.000 25.98 13.94 31.44 2.83
2644 2924 6.183361 TGACATACCATCATCATGAGGATTGT 60.183 38.462 24.72 24.72 33.18 2.71
2645 2925 6.235664 TGACATACCATCATCATGAGGATTG 58.764 40.000 19.77 18.34 32.57 2.67
2646 2926 6.443995 TGACATACCATCATCATGAGGATT 57.556 37.500 19.77 9.68 32.57 3.01
2647 2927 6.443995 TTGACATACCATCATCATGAGGAT 57.556 37.500 16.87 16.87 36.39 3.24
2648 2928 5.892524 TTGACATACCATCATCATGAGGA 57.107 39.130 13.16 13.16 27.97 3.71
2649 2929 7.148289 GCTATTTGACATACCATCATCATGAGG 60.148 40.741 0.00 0.00 30.57 3.86
2652 2932 7.683437 AGCTATTTGACATACCATCATCATG 57.317 36.000 0.00 0.00 0.00 3.07
2653 2933 8.600668 AGTAGCTATTTGACATACCATCATCAT 58.399 33.333 0.00 0.00 0.00 2.45
2654 2934 7.966812 AGTAGCTATTTGACATACCATCATCA 58.033 34.615 0.00 0.00 0.00 3.07
2655 2935 8.090831 TGAGTAGCTATTTGACATACCATCATC 58.909 37.037 0.00 0.00 0.00 2.92
2656 2936 7.966812 TGAGTAGCTATTTGACATACCATCAT 58.033 34.615 0.00 0.00 0.00 2.45
2658 2938 7.928706 ACTTGAGTAGCTATTTGACATACCATC 59.071 37.037 0.00 0.00 0.00 3.51
2659 2939 7.796054 ACTTGAGTAGCTATTTGACATACCAT 58.204 34.615 0.00 0.00 0.00 3.55
2662 2942 7.493367 AGGACTTGAGTAGCTATTTGACATAC 58.507 38.462 0.00 0.00 0.00 2.39
2664 2944 6.155221 TGAGGACTTGAGTAGCTATTTGACAT 59.845 38.462 0.00 0.00 0.00 3.06
2665 2945 5.480422 TGAGGACTTGAGTAGCTATTTGACA 59.520 40.000 0.00 0.00 0.00 3.58
2666 2946 5.808030 GTGAGGACTTGAGTAGCTATTTGAC 59.192 44.000 0.00 0.00 0.00 3.18
2667 2947 5.480422 TGTGAGGACTTGAGTAGCTATTTGA 59.520 40.000 0.00 0.00 0.00 2.69
2670 2950 4.160626 GGTGTGAGGACTTGAGTAGCTATT 59.839 45.833 0.00 0.00 0.00 1.73
2671 2951 3.702045 GGTGTGAGGACTTGAGTAGCTAT 59.298 47.826 0.00 0.00 0.00 2.97
2673 2953 1.896465 GGTGTGAGGACTTGAGTAGCT 59.104 52.381 0.00 0.00 0.00 3.32
2674 2954 1.896465 AGGTGTGAGGACTTGAGTAGC 59.104 52.381 0.00 0.00 0.00 3.58
2676 2956 3.090037 GCTAGGTGTGAGGACTTGAGTA 58.910 50.000 0.00 0.00 0.00 2.59
2677 2957 1.896465 GCTAGGTGTGAGGACTTGAGT 59.104 52.381 0.00 0.00 0.00 3.41
2678 2958 1.895798 TGCTAGGTGTGAGGACTTGAG 59.104 52.381 0.00 0.00 0.00 3.02
2679 2959 2.009681 TGCTAGGTGTGAGGACTTGA 57.990 50.000 0.00 0.00 0.00 3.02
2680 2960 2.224281 TGTTGCTAGGTGTGAGGACTTG 60.224 50.000 0.00 0.00 0.00 3.16
2681 2961 2.037772 CTGTTGCTAGGTGTGAGGACTT 59.962 50.000 0.00 0.00 0.00 3.01
2682 2962 1.620819 CTGTTGCTAGGTGTGAGGACT 59.379 52.381 0.00 0.00 0.00 3.85
2683 2963 1.618837 TCTGTTGCTAGGTGTGAGGAC 59.381 52.381 0.00 0.00 0.00 3.85
2684 2964 2.009681 TCTGTTGCTAGGTGTGAGGA 57.990 50.000 0.00 0.00 0.00 3.71
2685 2965 2.839486 TTCTGTTGCTAGGTGTGAGG 57.161 50.000 0.00 0.00 0.00 3.86
2686 2966 3.993081 CTCTTTCTGTTGCTAGGTGTGAG 59.007 47.826 0.00 0.00 0.00 3.51
2687 2967 3.388024 ACTCTTTCTGTTGCTAGGTGTGA 59.612 43.478 0.00 0.00 0.00 3.58
2688 2968 3.733337 ACTCTTTCTGTTGCTAGGTGTG 58.267 45.455 0.00 0.00 0.00 3.82
2689 2969 4.423625 AACTCTTTCTGTTGCTAGGTGT 57.576 40.909 0.00 0.00 0.00 4.16
2691 2971 3.565902 GCAAACTCTTTCTGTTGCTAGGT 59.434 43.478 0.00 0.00 0.00 3.08
2694 2974 3.944650 TGTGCAAACTCTTTCTGTTGCTA 59.055 39.130 8.51 0.00 0.00 3.49
2695 2975 2.754552 TGTGCAAACTCTTTCTGTTGCT 59.245 40.909 8.51 0.00 0.00 3.91
2697 2977 3.100817 CGTGTGCAAACTCTTTCTGTTG 58.899 45.455 5.28 0.00 0.00 3.33
2698 2978 2.747446 ACGTGTGCAAACTCTTTCTGTT 59.253 40.909 5.28 0.00 0.00 3.16
2699 2979 2.356135 ACGTGTGCAAACTCTTTCTGT 58.644 42.857 5.28 0.00 0.00 3.41
2700 2980 3.802139 TCTACGTGTGCAAACTCTTTCTG 59.198 43.478 5.28 0.00 0.00 3.02
2701 2981 4.054780 TCTACGTGTGCAAACTCTTTCT 57.945 40.909 5.28 0.00 0.00 2.52
2702 2982 4.318831 CCTTCTACGTGTGCAAACTCTTTC 60.319 45.833 5.28 0.00 0.00 2.62
2704 2984 3.131396 CCTTCTACGTGTGCAAACTCTT 58.869 45.455 5.28 0.00 0.00 2.85
2705 2985 2.364324 TCCTTCTACGTGTGCAAACTCT 59.636 45.455 5.28 0.00 0.00 3.24
2706 2986 2.750948 TCCTTCTACGTGTGCAAACTC 58.249 47.619 5.28 0.00 0.00 3.01
2707 2987 2.902705 TCCTTCTACGTGTGCAAACT 57.097 45.000 5.28 0.00 0.00 2.66
2708 2988 3.955771 TTTCCTTCTACGTGTGCAAAC 57.044 42.857 0.00 0.00 0.00 2.93
2711 2991 2.907634 TGTTTTCCTTCTACGTGTGCA 58.092 42.857 0.00 0.00 0.00 4.57
2712 2992 3.848554 GCTTGTTTTCCTTCTACGTGTGC 60.849 47.826 0.00 0.00 0.00 4.57
2713 2993 3.560068 AGCTTGTTTTCCTTCTACGTGTG 59.440 43.478 0.00 0.00 0.00 3.82
2714 2994 3.805207 AGCTTGTTTTCCTTCTACGTGT 58.195 40.909 0.00 0.00 0.00 4.49
2716 2996 6.930667 TTAAAGCTTGTTTTCCTTCTACGT 57.069 33.333 0.00 0.00 0.00 3.57
2718 2998 8.403236 TGTCTTTAAAGCTTGTTTTCCTTCTAC 58.597 33.333 10.51 0.00 0.00 2.59
2719 2999 8.514330 TGTCTTTAAAGCTTGTTTTCCTTCTA 57.486 30.769 10.51 0.00 0.00 2.10
2720 3000 7.404671 TGTCTTTAAAGCTTGTTTTCCTTCT 57.595 32.000 10.51 0.00 0.00 2.85
2721 3001 7.254117 GCTTGTCTTTAAAGCTTGTTTTCCTTC 60.254 37.037 10.51 0.00 45.31 3.46
2723 3003 6.042777 GCTTGTCTTTAAAGCTTGTTTTCCT 58.957 36.000 10.51 0.00 45.31 3.36
2724 3004 6.274001 GCTTGTCTTTAAAGCTTGTTTTCC 57.726 37.500 10.51 0.00 45.31 3.13
2750 3030 5.596836 AACTCTTTCTGTTGCCATGAAAA 57.403 34.783 0.00 0.00 30.67 2.29
2751 3031 5.350633 CAAACTCTTTCTGTTGCCATGAAA 58.649 37.500 0.00 0.00 0.00 2.69
2752 3032 4.737352 GCAAACTCTTTCTGTTGCCATGAA 60.737 41.667 0.00 0.00 0.00 2.57
2753 3033 3.243501 GCAAACTCTTTCTGTTGCCATGA 60.244 43.478 0.00 0.00 0.00 3.07
2754 3034 3.054878 GCAAACTCTTTCTGTTGCCATG 58.945 45.455 0.00 0.00 0.00 3.66
2755 3035 2.694628 TGCAAACTCTTTCTGTTGCCAT 59.305 40.909 4.91 0.00 0.00 4.40
2756 3036 2.098614 TGCAAACTCTTTCTGTTGCCA 58.901 42.857 4.91 0.00 0.00 4.92
2758 3038 2.854185 GTGTGCAAACTCTTTCTGTTGC 59.146 45.455 0.00 0.40 0.00 4.17
2764 3192 3.944422 TCTTCGTGTGCAAACTCTTTC 57.056 42.857 5.28 0.00 0.00 2.62
2767 3195 4.218635 TCTCTATCTTCGTGTGCAAACTCT 59.781 41.667 5.28 0.00 0.00 3.24
2768 3196 4.486090 TCTCTATCTTCGTGTGCAAACTC 58.514 43.478 5.28 0.00 0.00 3.01
2769 3197 4.521130 TCTCTATCTTCGTGTGCAAACT 57.479 40.909 5.28 0.00 0.00 2.66
2770 3198 4.686554 ACTTCTCTATCTTCGTGTGCAAAC 59.313 41.667 0.00 0.00 0.00 2.93
2772 3200 4.521130 ACTTCTCTATCTTCGTGTGCAA 57.479 40.909 0.00 0.00 0.00 4.08
2773 3201 4.218635 AGAACTTCTCTATCTTCGTGTGCA 59.781 41.667 0.00 0.00 30.22 4.57
2774 3202 4.739195 AGAACTTCTCTATCTTCGTGTGC 58.261 43.478 0.00 0.00 30.22 4.57
2787 3215 8.228035 TGCCTATCTTTACTAGAGAACTTCTC 57.772 38.462 10.43 10.43 43.70 2.87
2797 3225 8.673711 CATCTACTAGCTGCCTATCTTTACTAG 58.326 40.741 0.00 0.00 33.50 2.57
2798 3226 7.612244 CCATCTACTAGCTGCCTATCTTTACTA 59.388 40.741 0.00 0.00 0.00 1.82
2800 3228 6.209788 ACCATCTACTAGCTGCCTATCTTTAC 59.790 42.308 0.00 0.00 0.00 2.01
2803 3231 4.746466 ACCATCTACTAGCTGCCTATCTT 58.254 43.478 0.00 0.00 0.00 2.40
2804 3232 4.396357 ACCATCTACTAGCTGCCTATCT 57.604 45.455 0.00 0.00 0.00 1.98
2805 3233 4.642885 CCTACCATCTACTAGCTGCCTATC 59.357 50.000 0.00 0.00 0.00 2.08
2806 3234 4.044825 ACCTACCATCTACTAGCTGCCTAT 59.955 45.833 0.00 0.00 0.00 2.57
2807 3235 3.398292 ACCTACCATCTACTAGCTGCCTA 59.602 47.826 0.00 0.00 0.00 3.93
2809 3237 2.297597 CACCTACCATCTACTAGCTGCC 59.702 54.545 0.00 0.00 0.00 4.85
2810 3238 2.297597 CCACCTACCATCTACTAGCTGC 59.702 54.545 0.00 0.00 0.00 5.25
2811 3239 2.894126 CCCACCTACCATCTACTAGCTG 59.106 54.545 0.00 0.00 0.00 4.24
2813 3241 3.240310 TCCCACCTACCATCTACTAGC 57.760 52.381 0.00 0.00 0.00 3.42
2814 3242 6.078664 AGAAATCCCACCTACCATCTACTAG 58.921 44.000 0.00 0.00 0.00 2.57
2815 3243 6.039415 AGAAATCCCACCTACCATCTACTA 57.961 41.667 0.00 0.00 0.00 1.82
2817 3245 4.040584 GGAGAAATCCCACCTACCATCTAC 59.959 50.000 0.00 0.00 0.00 2.59
2818 3246 4.232091 GGAGAAATCCCACCTACCATCTA 58.768 47.826 0.00 0.00 0.00 1.98
2847 4378 5.718801 TTCTGGGGCTAAACCATAATACA 57.281 39.130 0.00 0.00 42.05 2.29
2876 4407 2.309755 TGGATTGGAGAGTTGGCTGAAT 59.690 45.455 0.00 0.00 0.00 2.57
3027 4558 5.427857 TCCCCTATACTTCTGGGTTATCA 57.572 43.478 0.00 0.00 39.31 2.15
3028 4559 5.127356 CGATCCCCTATACTTCTGGGTTATC 59.873 48.000 0.00 0.00 39.31 1.75
3029 4560 5.024118 CGATCCCCTATACTTCTGGGTTAT 58.976 45.833 0.00 0.00 39.31 1.89
3030 4561 4.413760 CGATCCCCTATACTTCTGGGTTA 58.586 47.826 0.00 0.00 39.31 2.85
3031 4562 3.240302 CGATCCCCTATACTTCTGGGTT 58.760 50.000 0.00 0.00 39.31 4.11
3032 4563 2.890814 CGATCCCCTATACTTCTGGGT 58.109 52.381 0.00 0.00 39.31 4.51
3033 4564 1.550976 GCGATCCCCTATACTTCTGGG 59.449 57.143 0.00 0.00 40.59 4.45
3034 4565 2.248248 TGCGATCCCCTATACTTCTGG 58.752 52.381 0.00 0.00 0.00 3.86
3035 4566 3.069586 TGTTGCGATCCCCTATACTTCTG 59.930 47.826 0.00 0.00 0.00 3.02
3036 4567 3.305720 TGTTGCGATCCCCTATACTTCT 58.694 45.455 0.00 0.00 0.00 2.85
3037 4568 3.654414 CTGTTGCGATCCCCTATACTTC 58.346 50.000 0.00 0.00 0.00 3.01
3038 4569 2.224305 GCTGTTGCGATCCCCTATACTT 60.224 50.000 0.00 0.00 0.00 2.24
3039 4570 1.344763 GCTGTTGCGATCCCCTATACT 59.655 52.381 0.00 0.00 0.00 2.12
3040 4571 1.344763 AGCTGTTGCGATCCCCTATAC 59.655 52.381 0.00 0.00 45.42 1.47
3041 4572 1.717032 AGCTGTTGCGATCCCCTATA 58.283 50.000 0.00 0.00 45.42 1.31
3042 4573 0.839946 AAGCTGTTGCGATCCCCTAT 59.160 50.000 0.00 0.00 45.42 2.57
3043 4574 0.618458 AAAGCTGTTGCGATCCCCTA 59.382 50.000 0.00 0.00 45.42 3.53
3044 4575 0.251341 AAAAGCTGTTGCGATCCCCT 60.251 50.000 0.00 0.00 45.42 4.79
3045 4576 0.109132 CAAAAGCTGTTGCGATCCCC 60.109 55.000 3.06 0.00 45.42 4.81
3046 4577 0.881118 TCAAAAGCTGTTGCGATCCC 59.119 50.000 12.11 0.00 45.42 3.85
3047 4578 1.135575 CCTCAAAAGCTGTTGCGATCC 60.136 52.381 12.11 0.00 45.42 3.36
3048 4579 1.135575 CCCTCAAAAGCTGTTGCGATC 60.136 52.381 12.11 0.00 45.42 3.69
3049 4580 0.883833 CCCTCAAAAGCTGTTGCGAT 59.116 50.000 12.11 0.00 45.42 4.58
3050 4581 0.465460 ACCCTCAAAAGCTGTTGCGA 60.465 50.000 12.11 0.00 45.42 5.10
3051 4582 1.197721 CTACCCTCAAAAGCTGTTGCG 59.802 52.381 12.11 5.63 45.42 4.85
3052 4583 2.485814 CTCTACCCTCAAAAGCTGTTGC 59.514 50.000 12.11 0.00 40.05 4.17
3053 4584 3.744660 ACTCTACCCTCAAAAGCTGTTG 58.255 45.455 10.64 10.64 0.00 3.33
3054 4585 5.763876 ATACTCTACCCTCAAAAGCTGTT 57.236 39.130 0.00 0.00 0.00 3.16
3055 4586 5.248477 TGAATACTCTACCCTCAAAAGCTGT 59.752 40.000 0.00 0.00 0.00 4.40
3056 4587 5.734720 TGAATACTCTACCCTCAAAAGCTG 58.265 41.667 0.00 0.00 0.00 4.24
3057 4588 6.174049 GTTGAATACTCTACCCTCAAAAGCT 58.826 40.000 0.00 0.00 0.00 3.74
3058 4589 5.354513 GGTTGAATACTCTACCCTCAAAAGC 59.645 44.000 0.00 0.00 40.45 3.51
3059 4590 6.986904 GGTTGAATACTCTACCCTCAAAAG 57.013 41.667 0.00 0.00 40.45 2.27
3072 4603 9.801873 CGAATCAATAAATTTGGGTTGAATACT 57.198 29.630 15.01 5.42 34.62 2.12
3073 4604 9.796120 TCGAATCAATAAATTTGGGTTGAATAC 57.204 29.630 15.01 10.41 34.62 1.89
3074 4605 9.796120 GTCGAATCAATAAATTTGGGTTGAATA 57.204 29.630 15.01 4.16 34.62 1.75
3075 4606 8.310382 TGTCGAATCAATAAATTTGGGTTGAAT 58.690 29.630 15.01 9.74 34.62 2.57
3076 4607 7.596995 GTGTCGAATCAATAAATTTGGGTTGAA 59.403 33.333 15.01 2.31 34.62 2.69
3077 4608 7.087639 GTGTCGAATCAATAAATTTGGGTTGA 58.912 34.615 14.00 14.00 35.33 3.18
3078 4609 6.865726 TGTGTCGAATCAATAAATTTGGGTTG 59.134 34.615 0.00 3.99 0.00 3.77
3079 4610 6.987386 TGTGTCGAATCAATAAATTTGGGTT 58.013 32.000 0.00 0.00 0.00 4.11
3080 4611 6.582677 TGTGTCGAATCAATAAATTTGGGT 57.417 33.333 0.00 0.00 0.00 4.51
3081 4612 6.531240 CCTTGTGTCGAATCAATAAATTTGGG 59.469 38.462 0.00 0.00 0.00 4.12
3082 4613 6.531240 CCCTTGTGTCGAATCAATAAATTTGG 59.469 38.462 0.00 1.78 0.00 3.28
3083 4614 6.531240 CCCCTTGTGTCGAATCAATAAATTTG 59.469 38.462 0.00 0.00 0.00 2.32
3084 4615 6.435904 TCCCCTTGTGTCGAATCAATAAATTT 59.564 34.615 0.00 0.00 0.00 1.82
3085 4616 5.949354 TCCCCTTGTGTCGAATCAATAAATT 59.051 36.000 4.42 0.00 0.00 1.82
3086 4617 5.505780 TCCCCTTGTGTCGAATCAATAAAT 58.494 37.500 4.42 0.00 0.00 1.40
3087 4618 4.912586 TCCCCTTGTGTCGAATCAATAAA 58.087 39.130 4.42 0.00 0.00 1.40
3088 4619 4.513442 CTCCCCTTGTGTCGAATCAATAA 58.487 43.478 4.42 0.00 0.00 1.40
3089 4620 3.681594 GCTCCCCTTGTGTCGAATCAATA 60.682 47.826 4.42 0.00 0.00 1.90
3090 4621 2.941415 GCTCCCCTTGTGTCGAATCAAT 60.941 50.000 4.42 0.00 0.00 2.57
3091 4622 1.610624 GCTCCCCTTGTGTCGAATCAA 60.611 52.381 0.00 0.00 0.00 2.57
3092 4623 0.036388 GCTCCCCTTGTGTCGAATCA 60.036 55.000 0.00 0.00 0.00 2.57
3093 4624 0.744771 GGCTCCCCTTGTGTCGAATC 60.745 60.000 0.00 0.00 0.00 2.52
3094 4625 1.299976 GGCTCCCCTTGTGTCGAAT 59.700 57.895 0.00 0.00 0.00 3.34
3095 4626 1.701031 TTGGCTCCCCTTGTGTCGAA 61.701 55.000 0.00 0.00 0.00 3.71
3096 4627 1.701031 TTTGGCTCCCCTTGTGTCGA 61.701 55.000 0.00 0.00 0.00 4.20
3097 4628 1.228124 TTTGGCTCCCCTTGTGTCG 60.228 57.895 0.00 0.00 0.00 4.35
3098 4629 0.110486 TCTTTGGCTCCCCTTGTGTC 59.890 55.000 0.00 0.00 0.00 3.67
3099 4630 0.555769 TTCTTTGGCTCCCCTTGTGT 59.444 50.000 0.00 0.00 0.00 3.72
3100 4631 1.928868 ATTCTTTGGCTCCCCTTGTG 58.071 50.000 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.