Multiple sequence alignment - TraesCS7A01G012800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G012800 chr7A 100.000 4769 0 0 1 4769 5617530 5612762 0.000000e+00 8807
1 TraesCS7A01G012800 chr7A 94.564 1159 36 7 1829 2987 6303461 6302330 0.000000e+00 1766
2 TraesCS7A01G012800 chr7A 95.664 761 30 2 2227 2987 6133762 6133005 0.000000e+00 1219
3 TraesCS7A01G012800 chr7A 91.216 592 38 6 2985 3566 6132947 6132360 0.000000e+00 793
4 TraesCS7A01G012800 chr7A 87.891 512 25 9 1339 1813 6304057 6303546 6.930000e-158 568
5 TraesCS7A01G012800 chr7A 92.398 342 18 3 3668 4004 6132306 6131968 9.280000e-132 481
6 TraesCS7A01G012800 chr7A 96.503 286 10 0 1829 2114 6279950 6279665 1.550000e-129 473
7 TraesCS7A01G012800 chr7A 83.573 487 50 18 3163 3625 4898648 4898168 3.410000e-116 429
8 TraesCS7A01G012800 chr7A 94.203 276 8 3 1562 1830 6280262 6279988 9.550000e-112 414
9 TraesCS7A01G012800 chr7A 85.564 381 41 5 4394 4769 5351017 5351388 2.080000e-103 387
10 TraesCS7A01G012800 chr7A 85.294 374 41 5 4401 4769 5025087 5024723 1.620000e-99 374
11 TraesCS7A01G012800 chr7A 85.305 279 32 6 4497 4769 5745848 5746123 3.630000e-71 279
12 TraesCS7A01G012800 chr7A 86.957 230 28 2 4541 4769 5771738 5771966 1.700000e-64 257
13 TraesCS7A01G012800 chr7A 85.200 250 22 5 4412 4656 6074246 6074007 4.770000e-60 243
14 TraesCS7A01G012800 chr7A 78.049 451 53 26 2377 2807 6304025 6303601 4.770000e-60 243
15 TraesCS7A01G012800 chr7A 98.519 135 2 0 2045 2179 6133895 6133761 6.170000e-59 239
16 TraesCS7A01G012800 chr7A 76.079 556 65 41 672 1193 6305318 6304797 1.340000e-55 228
17 TraesCS7A01G012800 chr7A 86.842 114 13 1 4317 4430 5002584 5002473 5.010000e-25 126
18 TraesCS7A01G012800 chr7D 94.082 1166 34 7 1829 2987 5036275 5035138 0.000000e+00 1738
19 TraesCS7A01G012800 chr7D 87.559 852 49 18 2989 3825 5035074 5034265 0.000000e+00 933
20 TraesCS7A01G012800 chr7D 89.313 524 23 7 1339 1830 5036835 5036313 1.130000e-175 627
21 TraesCS7A01G012800 chr7D 84.175 594 64 16 4189 4769 5033537 5032961 2.510000e-152 549
22 TraesCS7A01G012800 chr7D 83.297 461 48 16 3190 3625 4995804 4995348 9.620000e-107 398
23 TraesCS7A01G012800 chr7D 81.679 262 22 13 718 970 5040335 5040091 1.350000e-45 195
24 TraesCS7A01G012800 chr4D 85.144 626 78 11 12 634 223634033 223633420 1.130000e-175 627
25 TraesCS7A01G012800 chr4D 81.040 654 87 18 1 636 363922276 363921642 2.000000e-133 486
26 TraesCS7A01G012800 chr4D 79.862 581 88 19 1 569 353047170 353046607 9.620000e-107 398
27 TraesCS7A01G012800 chr4B 83.866 626 78 16 12 634 401116265 401116870 4.140000e-160 575
28 TraesCS7A01G012800 chr2B 82.704 636 91 14 1 631 476465591 476464970 9.020000e-152 547
29 TraesCS7A01G012800 chr6A 82.547 636 83 14 1 634 525034972 525034363 7.020000e-148 534
30 TraesCS7A01G012800 chr6A 81.506 611 93 14 1 606 377625533 377626128 7.180000e-133 484
31 TraesCS7A01G012800 chr5B 82.353 629 88 12 12 636 551277449 551278058 4.230000e-145 525
32 TraesCS7A01G012800 chr5B 88.672 256 21 3 1879 2134 147431645 147431398 6.000000e-79 305
33 TraesCS7A01G012800 chr5B 83.333 258 41 2 3257 3513 147431618 147431362 2.220000e-58 237
34 TraesCS7A01G012800 chr1A 81.359 633 78 21 12 639 403383707 403383110 3.340000e-131 479
35 TraesCS7A01G012800 chr3B 81.911 586 73 16 1 581 452421176 452421733 9.350000e-127 464
36 TraesCS7A01G012800 chr3B 80.512 508 63 19 1 501 56360024 56359546 1.630000e-94 357
37 TraesCS7A01G012800 chr2D 82.103 542 57 21 6 543 540827964 540828469 1.230000e-115 427
38 TraesCS7A01G012800 chr2D 82.806 506 48 17 4277 4769 614369356 614368877 2.650000e-112 416
39 TraesCS7A01G012800 chr2D 85.366 164 22 2 4004 4166 614370415 614370253 8.210000e-38 169
40 TraesCS7A01G012800 chr1B 80.777 515 74 16 1 513 164840263 164839772 3.480000e-101 379
41 TraesCS7A01G012800 chr4A 87.234 329 40 2 3174 3502 738746781 738747107 1.620000e-99 374
42 TraesCS7A01G012800 chr4A 75.587 639 107 26 6 636 735048763 735048166 2.190000e-68 270
43 TraesCS7A01G012800 chr4A 85.603 257 28 5 4518 4769 738384773 738385025 1.320000e-65 261
44 TraesCS7A01G012800 chr4A 88.430 121 12 1 4317 4437 738521717 738521835 1.380000e-30 145
45 TraesCS7A01G012800 chr4A 86.087 115 10 4 3613 3724 738747278 738747389 8.380000e-23 119
46 TraesCS7A01G012800 chr5A 86.800 250 25 3 1873 2121 169301251 169301493 6.080000e-69 272
47 TraesCS7A01G012800 chrUn 87.391 230 27 2 4541 4769 228696926 228697154 3.660000e-66 263
48 TraesCS7A01G012800 chr5D 82.171 258 44 2 3257 3513 135652103 135651847 2.230000e-53 220


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G012800 chr7A 5612762 5617530 4768 True 8807.00 8807 100.00000 1 4769 1 chr7A.!!$R4 4768
1 TraesCS7A01G012800 chr7A 6302330 6305318 2988 True 701.25 1766 84.14575 672 2987 4 chr7A.!!$R8 2315
2 TraesCS7A01G012800 chr7A 6131968 6133895 1927 True 683.00 1219 94.44925 2045 4004 4 chr7A.!!$R6 1959
3 TraesCS7A01G012800 chr7A 6279665 6280262 597 True 443.50 473 95.35300 1562 2114 2 chr7A.!!$R7 552
4 TraesCS7A01G012800 chr7D 5032961 5040335 7374 True 808.40 1738 87.36160 718 4769 5 chr7D.!!$R2 4051
5 TraesCS7A01G012800 chr4D 223633420 223634033 613 True 627.00 627 85.14400 12 634 1 chr4D.!!$R1 622
6 TraesCS7A01G012800 chr4D 363921642 363922276 634 True 486.00 486 81.04000 1 636 1 chr4D.!!$R3 635
7 TraesCS7A01G012800 chr4D 353046607 353047170 563 True 398.00 398 79.86200 1 569 1 chr4D.!!$R2 568
8 TraesCS7A01G012800 chr4B 401116265 401116870 605 False 575.00 575 83.86600 12 634 1 chr4B.!!$F1 622
9 TraesCS7A01G012800 chr2B 476464970 476465591 621 True 547.00 547 82.70400 1 631 1 chr2B.!!$R1 630
10 TraesCS7A01G012800 chr6A 525034363 525034972 609 True 534.00 534 82.54700 1 634 1 chr6A.!!$R1 633
11 TraesCS7A01G012800 chr6A 377625533 377626128 595 False 484.00 484 81.50600 1 606 1 chr6A.!!$F1 605
12 TraesCS7A01G012800 chr5B 551277449 551278058 609 False 525.00 525 82.35300 12 636 1 chr5B.!!$F1 624
13 TraesCS7A01G012800 chr1A 403383110 403383707 597 True 479.00 479 81.35900 12 639 1 chr1A.!!$R1 627
14 TraesCS7A01G012800 chr3B 452421176 452421733 557 False 464.00 464 81.91100 1 581 1 chr3B.!!$F1 580
15 TraesCS7A01G012800 chr2D 540827964 540828469 505 False 427.00 427 82.10300 6 543 1 chr2D.!!$F1 537
16 TraesCS7A01G012800 chr2D 614368877 614370415 1538 True 292.50 416 84.08600 4004 4769 2 chr2D.!!$R1 765
17 TraesCS7A01G012800 chr4A 735048166 735048763 597 True 270.00 270 75.58700 6 636 1 chr4A.!!$R1 630
18 TraesCS7A01G012800 chr4A 738746781 738747389 608 False 246.50 374 86.66050 3174 3724 2 chr4A.!!$F3 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
638 696 0.246635 GGCTGGAGACGCTCTAAACA 59.753 55.0 6.78 0.00 0.00 2.83 F
1044 3846 0.037605 GGCTGCTGCTGCTTGATTTT 60.038 50.0 26.79 0.00 40.48 1.82 F
1233 4074 0.114168 AGCACTGGGACTCTGAGAGT 59.886 55.0 16.14 16.14 46.42 3.24 F
2532 6082 0.178964 CCAAGGCCTTCCAGGTGAAA 60.179 55.0 17.29 0.00 37.80 2.69 F
3278 6940 0.551377 TTGTAGGGGAGGAATGGCCA 60.551 55.0 8.56 8.56 40.02 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1490 4906 0.620556 TGGAAGGCCTTGGAGATGAC 59.379 55.000 26.25 5.23 34.31 3.06 R
2244 5766 1.200716 CGCCGACAGACTGGTAGTTTA 59.799 52.381 7.51 0.00 0.00 2.01 R
2954 6538 3.506398 TCATAGCATATCGGGGTCTCAA 58.494 45.455 0.00 0.00 0.00 3.02 R
3345 7007 0.915872 TGGTGATCATGTGGAGCCCT 60.916 55.000 0.00 0.00 0.00 5.19 R
4184 8353 0.967380 AATAACACCAGCCAGCCTGC 60.967 55.000 0.00 0.00 40.36 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
206 214 2.473760 CGTCCTCTCCGACAGCGAT 61.474 63.158 0.00 0.00 40.82 4.58
216 224 1.445095 GACAGCGATGAGGAGGCAT 59.555 57.895 8.12 0.00 0.00 4.40
243 252 3.357079 CAACCCTGTCCGCAGCAC 61.357 66.667 0.00 0.00 41.26 4.40
277 286 3.865929 CTGCAGCAAGGACGACGGT 62.866 63.158 0.00 0.00 0.00 4.83
281 293 2.279918 GCAAGGACGACGGTGTGT 60.280 61.111 0.00 0.00 0.00 3.72
284 296 0.594602 CAAGGACGACGGTGTGTAGA 59.405 55.000 0.00 0.00 0.00 2.59
294 306 2.084681 GTGTGTAGAACGACGGCGG 61.085 63.158 18.49 0.00 43.17 6.13
327 366 4.415332 CGGCAGCGAGTACACCGT 62.415 66.667 8.98 0.00 39.05 4.83
474 523 7.873739 ATTTTGTCCAAAATCGAGTCATTTC 57.126 32.000 11.26 0.00 44.98 2.17
501 553 4.869297 CGAATTTGAGCCCAATTTGCATTA 59.131 37.500 0.00 0.00 31.46 1.90
504 556 4.724074 TTGAGCCCAATTTGCATTAGAG 57.276 40.909 0.00 0.00 0.00 2.43
525 577 2.047274 CGGCGTCTGGGTGTCAAT 60.047 61.111 0.00 0.00 0.00 2.57
584 637 1.125711 AATATCGCCGGTTAGCCCCT 61.126 55.000 1.90 0.00 0.00 4.79
608 663 3.967987 GGAGGCTCTATTTCAGTCCCTTA 59.032 47.826 15.23 0.00 0.00 2.69
636 694 1.511305 CGGCTGGAGACGCTCTAAA 59.489 57.895 6.78 0.00 40.91 1.85
637 695 0.802607 CGGCTGGAGACGCTCTAAAC 60.803 60.000 6.78 0.00 40.91 2.01
638 696 0.246635 GGCTGGAGACGCTCTAAACA 59.753 55.000 6.78 0.00 0.00 2.83
639 697 1.337823 GGCTGGAGACGCTCTAAACAA 60.338 52.381 6.78 0.00 0.00 2.83
640 698 2.622436 GCTGGAGACGCTCTAAACAAT 58.378 47.619 6.78 0.00 0.00 2.71
641 699 3.003480 GCTGGAGACGCTCTAAACAATT 58.997 45.455 6.78 0.00 0.00 2.32
642 700 3.181516 GCTGGAGACGCTCTAAACAATTG 60.182 47.826 3.24 3.24 0.00 2.32
643 701 3.334691 TGGAGACGCTCTAAACAATTGG 58.665 45.455 10.83 0.00 0.00 3.16
644 702 3.007506 TGGAGACGCTCTAAACAATTGGA 59.992 43.478 10.83 0.00 0.00 3.53
645 703 4.000988 GGAGACGCTCTAAACAATTGGAA 58.999 43.478 10.83 0.00 0.00 3.53
646 704 4.454504 GGAGACGCTCTAAACAATTGGAAA 59.545 41.667 10.83 0.00 0.00 3.13
647 705 5.123979 GGAGACGCTCTAAACAATTGGAAAT 59.876 40.000 10.83 0.00 0.00 2.17
648 706 5.942872 AGACGCTCTAAACAATTGGAAATG 58.057 37.500 10.83 0.00 0.00 2.32
649 707 4.485163 ACGCTCTAAACAATTGGAAATGC 58.515 39.130 10.83 6.03 0.00 3.56
650 708 3.859386 CGCTCTAAACAATTGGAAATGCC 59.141 43.478 10.83 0.00 37.10 4.40
651 709 4.380867 CGCTCTAAACAATTGGAAATGCCT 60.381 41.667 10.83 0.00 37.63 4.75
652 710 5.482006 GCTCTAAACAATTGGAAATGCCTT 58.518 37.500 10.83 0.00 37.63 4.35
653 711 6.624861 CGCTCTAAACAATTGGAAATGCCTTA 60.625 38.462 10.83 0.00 37.63 2.69
654 712 7.096551 GCTCTAAACAATTGGAAATGCCTTAA 58.903 34.615 10.83 0.00 37.63 1.85
655 713 7.602265 GCTCTAAACAATTGGAAATGCCTTAAA 59.398 33.333 10.83 0.00 37.63 1.52
656 714 8.825667 TCTAAACAATTGGAAATGCCTTAAAC 57.174 30.769 10.83 0.00 37.63 2.01
657 715 8.424918 TCTAAACAATTGGAAATGCCTTAAACA 58.575 29.630 10.83 0.00 37.63 2.83
658 716 7.872113 AAACAATTGGAAATGCCTTAAACAA 57.128 28.000 10.83 0.00 37.63 2.83
659 717 8.462589 AAACAATTGGAAATGCCTTAAACAAT 57.537 26.923 10.83 0.00 37.63 2.71
660 718 9.566432 AAACAATTGGAAATGCCTTAAACAATA 57.434 25.926 10.83 0.00 37.63 1.90
661 719 9.566432 AACAATTGGAAATGCCTTAAACAATAA 57.434 25.926 10.83 0.00 37.63 1.40
662 720 9.737844 ACAATTGGAAATGCCTTAAACAATAAT 57.262 25.926 10.83 0.00 37.63 1.28
667 725 9.660180 TGGAAATGCCTTAAACAATAATTTACC 57.340 29.630 0.00 0.00 37.63 2.85
668 726 9.104965 GGAAATGCCTTAAACAATAATTTACCC 57.895 33.333 0.00 0.00 0.00 3.69
669 727 9.104965 GAAATGCCTTAAACAATAATTTACCCC 57.895 33.333 0.00 0.00 0.00 4.95
670 728 7.988249 ATGCCTTAAACAATAATTTACCCCT 57.012 32.000 0.00 0.00 0.00 4.79
686 744 2.434336 ACCCCTTCTTTCTTTTTGCCAC 59.566 45.455 0.00 0.00 0.00 5.01
693 752 7.436933 CCTTCTTTCTTTTTGCCACTTCTTAT 58.563 34.615 0.00 0.00 0.00 1.73
705 764 3.793559 CACTTCTTATAAGTGGGTCCCG 58.206 50.000 12.19 0.00 42.83 5.14
734 793 4.133796 GCAAATGCCCCTGCCGAC 62.134 66.667 0.00 0.00 36.33 4.79
735 794 3.451894 CAAATGCCCCTGCCGACC 61.452 66.667 0.00 0.00 36.33 4.79
745 804 1.750399 CTGCCGACCCCCAATTGAG 60.750 63.158 7.12 0.00 0.00 3.02
769 832 0.252012 ACTGGAGTGGAGAGGAGGTG 60.252 60.000 0.00 0.00 0.00 4.00
804 867 2.015227 CTCTCGCCTCAGCTTCTCCC 62.015 65.000 0.00 0.00 36.60 4.30
808 871 2.741055 GCCTCAGCTTCTCCCCCTC 61.741 68.421 0.00 0.00 35.50 4.30
809 872 2.430610 CCTCAGCTTCTCCCCCTCG 61.431 68.421 0.00 0.00 0.00 4.63
881 960 1.796355 CGACGCACGGTGAGTAGTG 60.796 63.158 17.43 7.17 41.01 2.74
886 965 2.268022 CACGGTGAGTAGTGCTCCT 58.732 57.895 0.74 0.00 43.48 3.69
889 968 1.668101 CGGTGAGTAGTGCTCCTCCC 61.668 65.000 5.73 2.66 43.48 4.30
892 971 0.324738 TGAGTAGTGCTCCTCCCCTG 60.325 60.000 5.73 0.00 43.48 4.45
894 973 1.990060 GTAGTGCTCCTCCCCTGCA 60.990 63.158 0.00 0.00 0.00 4.41
899 978 2.040278 CTCCTCCCCTGCACCTCT 59.960 66.667 0.00 0.00 0.00 3.69
900 979 2.039624 TCCTCCCCTGCACCTCTC 59.960 66.667 0.00 0.00 0.00 3.20
901 980 2.284921 CCTCCCCTGCACCTCTCA 60.285 66.667 0.00 0.00 0.00 3.27
903 982 2.997315 TCCCCTGCACCTCTCACG 60.997 66.667 0.00 0.00 0.00 4.35
904 983 4.767255 CCCCTGCACCTCTCACGC 62.767 72.222 0.00 0.00 0.00 5.34
905 984 3.699894 CCCTGCACCTCTCACGCT 61.700 66.667 0.00 0.00 0.00 5.07
906 985 2.125753 CCTGCACCTCTCACGCTC 60.126 66.667 0.00 0.00 0.00 5.03
907 986 2.653115 CTGCACCTCTCACGCTCA 59.347 61.111 0.00 0.00 0.00 4.26
908 987 1.217511 CTGCACCTCTCACGCTCAT 59.782 57.895 0.00 0.00 0.00 2.90
913 992 0.534412 ACCTCTCACGCTCATCCTTG 59.466 55.000 0.00 0.00 0.00 3.61
920 999 2.190578 GCTCATCCTTGTCCCCGG 59.809 66.667 0.00 0.00 0.00 5.73
939 1018 2.517875 GCGGCGACCTAGGGACTA 60.518 66.667 12.98 0.00 41.75 2.59
1001 3756 0.862283 GCGTTCTCGATCGACCTGAC 60.862 60.000 15.15 9.21 39.71 3.51
1004 3759 1.989966 TTCTCGATCGACCTGACCGC 61.990 60.000 15.15 0.00 0.00 5.68
1005 3760 3.471244 CTCGATCGACCTGACCGCC 62.471 68.421 15.15 0.00 0.00 6.13
1041 3843 3.132139 CGGCTGCTGCTGCTTGAT 61.132 61.111 26.79 0.00 38.88 2.57
1042 3844 2.697761 CGGCTGCTGCTGCTTGATT 61.698 57.895 26.79 0.00 38.88 2.57
1043 3845 1.590147 GGCTGCTGCTGCTTGATTT 59.410 52.632 26.79 0.00 40.48 2.17
1044 3846 0.037605 GGCTGCTGCTGCTTGATTTT 60.038 50.000 26.79 0.00 40.48 1.82
1045 3847 1.347320 GCTGCTGCTGCTTGATTTTC 58.653 50.000 22.10 0.00 40.48 2.29
1046 3848 1.067776 GCTGCTGCTGCTTGATTTTCT 60.068 47.619 22.10 0.00 40.48 2.52
1047 3849 2.609737 GCTGCTGCTGCTTGATTTTCTT 60.610 45.455 22.10 0.00 40.48 2.52
1048 3850 3.650139 CTGCTGCTGCTTGATTTTCTTT 58.350 40.909 17.00 0.00 40.48 2.52
1049 3851 4.056050 CTGCTGCTGCTTGATTTTCTTTT 58.944 39.130 17.00 0.00 40.48 2.27
1050 3852 3.805422 TGCTGCTGCTTGATTTTCTTTTG 59.195 39.130 17.00 0.00 40.48 2.44
1051 3853 3.363673 GCTGCTGCTTGATTTTCTTTTGC 60.364 43.478 8.53 0.00 36.03 3.68
1052 3854 4.056050 CTGCTGCTTGATTTTCTTTTGCT 58.944 39.130 0.00 0.00 0.00 3.91
1053 3855 4.444536 TGCTGCTTGATTTTCTTTTGCTT 58.555 34.783 0.00 0.00 0.00 3.91
1054 3856 4.271533 TGCTGCTTGATTTTCTTTTGCTTG 59.728 37.500 0.00 0.00 0.00 4.01
1055 3857 4.769215 CTGCTTGATTTTCTTTTGCTTGC 58.231 39.130 0.00 0.00 0.00 4.01
1056 3858 4.444536 TGCTTGATTTTCTTTTGCTTGCT 58.555 34.783 0.00 0.00 0.00 3.91
1057 3859 4.877251 TGCTTGATTTTCTTTTGCTTGCTT 59.123 33.333 0.00 0.00 0.00 3.91
1058 3860 5.202640 GCTTGATTTTCTTTTGCTTGCTTG 58.797 37.500 0.00 0.00 0.00 4.01
1059 3861 4.799419 TGATTTTCTTTTGCTTGCTTGC 57.201 36.364 0.00 0.00 0.00 4.01
1060 3862 4.444536 TGATTTTCTTTTGCTTGCTTGCT 58.555 34.783 3.47 0.00 0.00 3.91
1061 3863 4.271533 TGATTTTCTTTTGCTTGCTTGCTG 59.728 37.500 3.47 0.00 0.00 4.41
1062 3864 1.574134 TTCTTTTGCTTGCTTGCTGC 58.426 45.000 0.00 0.00 43.25 5.25
1074 3876 3.229156 TTGCTGCATGCTGGGTTGC 62.229 57.895 23.88 15.32 43.37 4.17
1078 3880 4.446413 GCATGCTGGGTTGCTGCC 62.446 66.667 11.37 0.00 35.95 4.85
1079 3881 2.678934 CATGCTGGGTTGCTGCCT 60.679 61.111 0.00 0.00 0.00 4.75
1083 3885 2.352422 CTGGGTTGCTGCCTGCTA 59.648 61.111 0.00 0.00 43.37 3.49
1085 3887 1.589716 CTGGGTTGCTGCCTGCTAAC 61.590 60.000 0.00 0.00 43.37 2.34
1100 3902 1.795286 GCTAACATCCTAGCACGCATC 59.205 52.381 0.00 0.00 43.25 3.91
1103 3905 0.179073 ACATCCTAGCACGCATCCAC 60.179 55.000 0.00 0.00 0.00 4.02
1113 3918 2.537560 CGCATCCACCGAATCTGGC 61.538 63.158 0.00 0.00 0.00 4.85
1140 3945 2.171725 GGGGAATTTCGCGTCGAGG 61.172 63.158 5.77 0.00 37.14 4.63
1167 3975 4.384056 CTTCTTCTTCAGTCAAAGAGGCA 58.616 43.478 0.00 0.00 36.66 4.75
1229 4070 0.178921 AGGAAGCACTGGGACTCTGA 60.179 55.000 0.00 0.00 0.00 3.27
1233 4074 0.114168 AGCACTGGGACTCTGAGAGT 59.886 55.000 16.14 16.14 46.42 3.24
1247 4092 5.069781 ACTCTGAGAGTATTCAAGGTATGCC 59.930 44.000 14.47 0.00 41.51 4.40
1250 4095 4.038042 TGAGAGTATTCAAGGTATGCCTCG 59.962 45.833 1.55 0.00 46.33 4.63
1277 4122 2.698855 TAATCAGAGGGTTGCTCAGC 57.301 50.000 0.00 0.00 0.00 4.26
1280 4125 1.376942 CAGAGGGTTGCTCAGCTGG 60.377 63.158 15.13 5.82 0.00 4.85
1281 4126 1.845205 AGAGGGTTGCTCAGCTGGT 60.845 57.895 15.13 0.00 0.00 4.00
1282 4127 0.545309 AGAGGGTTGCTCAGCTGGTA 60.545 55.000 15.13 1.01 0.00 3.25
1304 4149 8.496916 TGGTAGTATACATTCTCACCACTACTA 58.503 37.037 5.50 1.07 45.43 1.82
1312 4157 8.083828 ACATTCTCACCACTACTAATTCTCAT 57.916 34.615 0.00 0.00 0.00 2.90
1314 4159 9.388506 CATTCTCACCACTACTAATTCTCATTT 57.611 33.333 0.00 0.00 0.00 2.32
1322 4167 8.821894 CCACTACTAATTCTCATTTTCTAGCAC 58.178 37.037 0.00 0.00 0.00 4.40
1323 4168 9.593134 CACTACTAATTCTCATTTTCTAGCACT 57.407 33.333 0.00 0.00 0.00 4.40
1371 4787 1.328279 CCTGGTTTCCCTTGGTTGTC 58.672 55.000 0.00 0.00 0.00 3.18
1377 4793 2.065899 TTCCCTTGGTTGTCCAGTTG 57.934 50.000 0.00 0.00 45.22 3.16
1380 4796 2.510382 TCCCTTGGTTGTCCAGTTGTTA 59.490 45.455 0.00 0.00 45.22 2.41
1403 4819 9.788960 GTTAGATTCCTAATTTGATTGGTGAAC 57.211 33.333 0.00 0.00 37.23 3.18
1463 4879 1.001764 TACAGCTGCTGCCATTGCT 60.002 52.632 28.39 10.50 40.80 3.91
1490 4906 1.517257 GTCTGCCTCCACGACGATG 60.517 63.158 0.00 0.00 0.00 3.84
1510 4926 0.620556 TCATCTCCAAGGCCTTCCAC 59.379 55.000 17.29 0.00 33.74 4.02
1542 4983 1.278127 CACCAAGGTGTCCTTACCGAT 59.722 52.381 11.08 0.00 42.67 4.18
1556 4997 3.825611 CGATTTTGGCCCCTGCGG 61.826 66.667 0.00 0.00 38.85 5.69
1642 5085 0.550914 TACTGGTTGGGGATGCCATC 59.449 55.000 5.30 0.00 0.00 3.51
1660 5103 9.209175 GATGCCATCCTAAAATTACTAGTAGTG 57.791 37.037 13.29 0.00 0.00 2.74
1661 5104 7.506114 TGCCATCCTAAAATTACTAGTAGTGG 58.494 38.462 13.29 3.81 0.00 4.00
1825 5309 9.378551 CCAGAGATACTACTGTGATCTATCTAC 57.621 40.741 0.00 0.00 33.82 2.59
2121 5643 7.734942 AGGAAGGCAAGTTCATATTTGAAAAA 58.265 30.769 0.00 0.00 43.29 1.94
2224 5746 5.628797 TCATCCATGCCTTTGTACATAGA 57.371 39.130 14.16 0.00 0.00 1.98
2225 5747 6.000246 TCATCCATGCCTTTGTACATAGAA 58.000 37.500 14.16 3.52 0.00 2.10
2226 5748 6.057533 TCATCCATGCCTTTGTACATAGAAG 58.942 40.000 14.16 6.83 0.00 2.85
2227 5749 5.435686 TCCATGCCTTTGTACATAGAAGT 57.564 39.130 14.16 0.00 0.00 3.01
2228 5750 6.553953 TCCATGCCTTTGTACATAGAAGTA 57.446 37.500 14.16 0.00 0.00 2.24
2229 5751 6.346096 TCCATGCCTTTGTACATAGAAGTAC 58.654 40.000 14.16 2.85 43.58 2.73
2263 5813 3.308438 TTAAACTACCAGTCTGTCGGC 57.692 47.619 0.00 0.00 0.00 5.54
2498 6048 2.584391 GGAACCACGTCTGCCTCCT 61.584 63.158 0.00 0.00 0.00 3.69
2532 6082 0.178964 CCAAGGCCTTCCAGGTGAAA 60.179 55.000 17.29 0.00 37.80 2.69
2535 6085 2.634453 CAAGGCCTTCCAGGTGAAAAAT 59.366 45.455 17.29 0.00 37.80 1.82
2625 6175 3.907474 TGTTAGGGATCAAGAGTGGACAA 59.093 43.478 0.00 0.00 0.00 3.18
2651 6205 9.804977 AGCAGAGCTTAATCAATAAATAGGAAT 57.195 29.630 0.00 0.00 33.89 3.01
2776 6330 2.979240 GGAGAGGTCCAACAATCTGAC 58.021 52.381 0.00 0.00 43.31 3.51
2816 6370 6.812879 GCTGACTTTAGCTAACCCTAAAAA 57.187 37.500 5.45 0.00 40.52 1.94
2954 6538 1.552337 ACACGAGCTCCATTCAGATGT 59.448 47.619 8.47 0.00 0.00 3.06
2962 6546 3.539604 CTCCATTCAGATGTTGAGACCC 58.460 50.000 0.00 0.00 37.07 4.46
3002 6648 2.608752 CCATCTTTTGGCTGCTGTTGTC 60.609 50.000 0.00 0.00 39.09 3.18
3016 6662 3.676324 GCTGTTGTCGTATCAACTAGGCT 60.676 47.826 16.47 0.00 45.26 4.58
3031 6677 7.913789 TCAACTAGGCTCTTTAAATAGGTTCA 58.086 34.615 0.00 0.00 0.00 3.18
3032 6678 8.548877 TCAACTAGGCTCTTTAAATAGGTTCAT 58.451 33.333 0.00 0.00 0.00 2.57
3033 6679 9.178758 CAACTAGGCTCTTTAAATAGGTTCATT 57.821 33.333 0.00 0.00 0.00 2.57
3048 6694 6.839124 AGGTTCATTATTCATCAACTGCAA 57.161 33.333 0.00 0.00 0.00 4.08
3113 6769 7.985752 GCCCTTGTGTTTCTATACTTACATAGT 59.014 37.037 0.00 0.00 41.04 2.12
3140 6796 7.309867 GGAGTTTCACTCAACTAACCAGAGATA 60.310 40.741 6.25 0.00 46.79 1.98
3141 6797 7.379750 AGTTTCACTCAACTAACCAGAGATAC 58.620 38.462 0.00 0.00 35.10 2.24
3157 6815 7.613801 ACCAGAGATACTGTGATCTATCCATAC 59.386 40.741 0.00 0.00 44.40 2.39
3158 6816 7.613411 CCAGAGATACTGTGATCTATCCATACA 59.387 40.741 0.00 0.00 44.40 2.29
3255 6917 7.516198 ACTAGTACCTTTGTTCTTTCGACTA 57.484 36.000 0.00 0.00 0.00 2.59
3278 6940 0.551377 TTGTAGGGGAGGAATGGCCA 60.551 55.000 8.56 8.56 40.02 5.36
3345 7007 1.196766 AGGACAGGCAGCTCATGACA 61.197 55.000 0.00 0.00 40.68 3.58
3356 7018 0.545171 CTCATGACAGGGCTCCACAT 59.455 55.000 0.00 0.00 0.00 3.21
3358 7020 0.253894 CATGACAGGGCTCCACATGA 59.746 55.000 0.00 0.00 40.13 3.07
3361 7023 0.543277 GACAGGGCTCCACATGATCA 59.457 55.000 0.00 0.00 0.00 2.92
3364 7026 0.915872 AGGGCTCCACATGATCACCA 60.916 55.000 0.00 0.00 0.00 4.17
3375 7037 4.158949 CACATGATCACCAACATCCATTGT 59.841 41.667 0.00 0.00 41.53 2.71
3387 7049 1.452110 TCCATTGTCGTGATTGCCAG 58.548 50.000 0.00 0.00 0.00 4.85
3486 7148 1.674962 GCCAAGATCATGCAGGAGAAC 59.325 52.381 7.33 1.05 0.00 3.01
3566 7291 5.470368 TGACTTTGTACATAGCAGTCTGTC 58.530 41.667 12.62 3.60 35.80 3.51
3567 7292 4.822026 ACTTTGTACATAGCAGTCTGTCC 58.178 43.478 12.62 0.00 0.00 4.02
3568 7293 3.503827 TTGTACATAGCAGTCTGTCCG 57.496 47.619 0.00 0.00 0.00 4.79
3569 7294 2.443416 TGTACATAGCAGTCTGTCCGT 58.557 47.619 0.93 0.00 0.00 4.69
3570 7295 3.613030 TGTACATAGCAGTCTGTCCGTA 58.387 45.455 0.93 0.00 0.00 4.02
3571 7296 4.204799 TGTACATAGCAGTCTGTCCGTAT 58.795 43.478 0.93 0.00 0.00 3.06
3572 7297 3.717400 ACATAGCAGTCTGTCCGTATG 57.283 47.619 0.93 6.85 0.00 2.39
3573 7298 3.024547 ACATAGCAGTCTGTCCGTATGT 58.975 45.455 0.93 7.40 0.00 2.29
3574 7299 3.447586 ACATAGCAGTCTGTCCGTATGTT 59.552 43.478 0.93 0.00 28.90 2.71
3575 7300 2.656560 AGCAGTCTGTCCGTATGTTC 57.343 50.000 0.93 0.00 0.00 3.18
3576 7301 2.171840 AGCAGTCTGTCCGTATGTTCT 58.828 47.619 0.93 0.00 0.00 3.01
3577 7302 2.563179 AGCAGTCTGTCCGTATGTTCTT 59.437 45.455 0.93 0.00 0.00 2.52
3578 7303 2.668457 GCAGTCTGTCCGTATGTTCTTG 59.332 50.000 0.93 0.00 0.00 3.02
3579 7304 3.614150 GCAGTCTGTCCGTATGTTCTTGA 60.614 47.826 0.93 0.00 0.00 3.02
3580 7305 4.556233 CAGTCTGTCCGTATGTTCTTGAA 58.444 43.478 0.00 0.00 0.00 2.69
3581 7306 4.623167 CAGTCTGTCCGTATGTTCTTGAAG 59.377 45.833 0.00 0.00 0.00 3.02
3582 7307 4.281182 AGTCTGTCCGTATGTTCTTGAAGT 59.719 41.667 0.00 0.00 0.00 3.01
3583 7308 5.475909 AGTCTGTCCGTATGTTCTTGAAGTA 59.524 40.000 0.00 0.00 0.00 2.24
3584 7309 5.800941 GTCTGTCCGTATGTTCTTGAAGTAG 59.199 44.000 0.00 0.00 0.00 2.57
3585 7310 4.491676 TGTCCGTATGTTCTTGAAGTAGC 58.508 43.478 0.00 0.00 0.00 3.58
3586 7311 4.021807 TGTCCGTATGTTCTTGAAGTAGCA 60.022 41.667 0.00 0.00 0.00 3.49
3587 7312 4.563184 GTCCGTATGTTCTTGAAGTAGCAG 59.437 45.833 0.00 0.00 0.00 4.24
3588 7313 4.219944 TCCGTATGTTCTTGAAGTAGCAGT 59.780 41.667 0.00 0.00 0.00 4.40
3589 7314 4.563184 CCGTATGTTCTTGAAGTAGCAGTC 59.437 45.833 0.00 0.00 0.00 3.51
3590 7315 5.403246 CGTATGTTCTTGAAGTAGCAGTCT 58.597 41.667 0.00 0.00 0.00 3.24
3591 7316 5.287274 CGTATGTTCTTGAAGTAGCAGTCTG 59.713 44.000 0.00 0.00 0.00 3.51
3592 7317 4.672587 TGTTCTTGAAGTAGCAGTCTGT 57.327 40.909 0.93 0.00 0.00 3.41
3735 7488 8.097662 TGTGGTTGTATTTCCCCAATTTTATTC 58.902 33.333 0.00 0.00 0.00 1.75
3823 7585 5.568685 TTTTTCATTGACCGACAAACAGA 57.431 34.783 0.00 0.00 42.03 3.41
3824 7586 5.766150 TTTTCATTGACCGACAAACAGAT 57.234 34.783 0.00 0.00 42.03 2.90
3825 7587 4.747540 TTCATTGACCGACAAACAGATG 57.252 40.909 0.00 0.00 42.03 2.90
3826 7588 3.073678 TCATTGACCGACAAACAGATGG 58.926 45.455 0.00 0.00 42.03 3.51
3827 7589 1.234821 TTGACCGACAAACAGATGGC 58.765 50.000 0.00 0.00 35.39 4.40
3828 7590 0.396435 TGACCGACAAACAGATGGCT 59.604 50.000 0.00 0.00 0.00 4.75
3829 7591 1.079503 GACCGACAAACAGATGGCTC 58.920 55.000 0.00 0.00 0.00 4.70
3830 7592 0.396435 ACCGACAAACAGATGGCTCA 59.604 50.000 0.00 0.00 0.00 4.26
3831 7593 1.003580 ACCGACAAACAGATGGCTCAT 59.996 47.619 0.00 0.00 0.00 2.90
3832 7594 1.399440 CCGACAAACAGATGGCTCATG 59.601 52.381 0.00 0.00 0.00 3.07
3833 7595 2.349590 CGACAAACAGATGGCTCATGA 58.650 47.619 0.00 0.00 0.00 3.07
3834 7596 2.094894 CGACAAACAGATGGCTCATGAC 59.905 50.000 0.00 0.00 0.00 3.06
3835 7597 3.076621 GACAAACAGATGGCTCATGACA 58.923 45.455 0.00 0.00 34.57 3.58
3836 7598 3.489355 ACAAACAGATGGCTCATGACAA 58.511 40.909 0.00 0.00 33.27 3.18
3837 7599 3.504906 ACAAACAGATGGCTCATGACAAG 59.495 43.478 0.00 0.00 33.27 3.16
3838 7600 1.747709 ACAGATGGCTCATGACAAGC 58.252 50.000 0.00 0.00 39.09 4.01
3844 7606 3.780925 GCTCATGACAAGCCACAAC 57.219 52.632 0.00 0.00 33.53 3.32
3908 7705 5.957842 TTTTCATGGCAATAGTCGTTCTT 57.042 34.783 0.00 0.00 0.00 2.52
3912 7709 4.759693 TCATGGCAATAGTCGTTCTTTGTT 59.240 37.500 0.00 0.00 0.00 2.83
3926 7723 6.428465 TCGTTCTTTGTTAATGGTATGAAGCA 59.572 34.615 0.00 0.00 37.55 3.91
3939 7736 7.101652 TGGTATGAAGCAGTTTCTAGAGTAG 57.898 40.000 0.00 0.00 36.71 2.57
4004 7801 8.070034 TCTTCGGTAATTAAGTGTATCTCCAA 57.930 34.615 0.00 0.00 0.00 3.53
4006 7803 8.657074 TTCGGTAATTAAGTGTATCTCCAATG 57.343 34.615 0.00 0.00 0.00 2.82
4007 7804 7.214381 TCGGTAATTAAGTGTATCTCCAATGG 58.786 38.462 0.00 0.00 0.00 3.16
4008 7805 6.073222 CGGTAATTAAGTGTATCTCCAATGGC 60.073 42.308 0.00 0.00 0.00 4.40
4017 7814 4.229582 TGTATCTCCAATGGCCTAGGTTTT 59.770 41.667 11.31 0.00 0.00 2.43
4019 7816 4.230745 TCTCCAATGGCCTAGGTTTTAC 57.769 45.455 11.31 0.00 0.00 2.01
4020 7817 3.053917 TCTCCAATGGCCTAGGTTTTACC 60.054 47.826 11.31 2.79 38.99 2.85
4070 8239 2.693069 ACTTTTCAGATCGCTCACTGG 58.307 47.619 0.00 0.00 35.20 4.00
4071 8240 1.396301 CTTTTCAGATCGCTCACTGGC 59.604 52.381 0.00 0.00 35.20 4.85
4114 8283 1.210885 AGAGGAAAAGGGCTCCAGGG 61.211 60.000 0.00 0.00 35.20 4.45
4118 8287 3.229659 AAAAGGGCTCCAGGGGCTG 62.230 63.158 12.38 0.00 0.00 4.85
4153 8322 2.030946 CGCTGCTATCTAAAGTTGCCAC 59.969 50.000 0.00 0.00 0.00 5.01
4166 8335 3.157087 AGTTGCCACGGATTTCTTGAAT 58.843 40.909 0.00 0.00 0.00 2.57
4183 8352 6.856135 CTTGAATACAAGCAGATGATAGCA 57.144 37.500 0.00 0.00 45.19 3.49
4184 8353 6.856135 TTGAATACAAGCAGATGATAGCAG 57.144 37.500 0.00 0.00 0.00 4.24
4185 8354 4.753610 TGAATACAAGCAGATGATAGCAGC 59.246 41.667 0.00 0.00 0.00 5.25
4186 8355 2.704464 ACAAGCAGATGATAGCAGCA 57.296 45.000 0.00 0.00 31.43 4.41
4187 8356 2.562635 ACAAGCAGATGATAGCAGCAG 58.437 47.619 0.00 0.00 31.43 4.24
4221 8436 9.614792 GGTGTTATTACATCAGGTTTCTCTTAT 57.385 33.333 0.00 0.00 35.38 1.73
4231 8446 6.778821 TCAGGTTTCTCTTATTCACATCCAA 58.221 36.000 0.00 0.00 0.00 3.53
4238 8453 9.605275 TTTCTCTTATTCACATCCAATACTCTG 57.395 33.333 0.00 0.00 0.00 3.35
4275 8495 7.530426 AAAAACAGAGAAGCATCCAATACTT 57.470 32.000 0.00 0.00 0.00 2.24
4287 9247 2.568062 TCCAATACTTCTACGCCAACCA 59.432 45.455 0.00 0.00 0.00 3.67
4307 9268 7.362056 CCAACCATGAAACTCTAAACGATGAAT 60.362 37.037 0.00 0.00 0.00 2.57
4311 9272 8.543774 CCATGAAACTCTAAACGATGAATCTAC 58.456 37.037 0.00 0.00 0.00 2.59
4315 9276 6.062434 ACTCTAAACGATGAATCTACGGAG 57.938 41.667 0.00 0.00 0.00 4.63
4325 9286 4.574892 TGAATCTACGGAGCAAACAATCA 58.425 39.130 0.00 0.00 0.00 2.57
4345 9306 6.791887 ATCAACACAACATCTGAACAGTAG 57.208 37.500 1.73 0.00 0.00 2.57
4346 9307 4.511454 TCAACACAACATCTGAACAGTAGC 59.489 41.667 1.73 0.00 0.00 3.58
4355 9316 6.701340 ACATCTGAACAGTAGCAAATACAGA 58.299 36.000 0.00 0.00 36.79 3.41
4361 9322 7.217200 TGAACAGTAGCAAATACAGAAGTTCT 58.783 34.615 0.00 0.00 36.37 3.01
4479 9449 4.523083 TGCCAACTGTGAAACTCTAAACT 58.477 39.130 0.00 0.00 38.04 2.66
4480 9450 4.947388 TGCCAACTGTGAAACTCTAAACTT 59.053 37.500 0.00 0.00 38.04 2.66
4482 9452 6.600032 TGCCAACTGTGAAACTCTAAACTTTA 59.400 34.615 0.00 0.00 38.04 1.85
4483 9453 7.284489 TGCCAACTGTGAAACTCTAAACTTTAT 59.716 33.333 0.00 0.00 38.04 1.40
4484 9454 7.591426 GCCAACTGTGAAACTCTAAACTTTATG 59.409 37.037 0.00 0.00 38.04 1.90
4485 9455 8.836413 CCAACTGTGAAACTCTAAACTTTATGA 58.164 33.333 0.00 0.00 38.04 2.15
4488 9458 8.560374 ACTGTGAAACTCTAAACTTTATGAAGC 58.440 33.333 0.00 0.00 38.04 3.86
4489 9459 8.445275 TGTGAAACTCTAAACTTTATGAAGCA 57.555 30.769 0.00 0.00 38.04 3.91
4490 9460 8.898761 TGTGAAACTCTAAACTTTATGAAGCAA 58.101 29.630 0.00 0.00 38.04 3.91
4491 9461 9.387123 GTGAAACTCTAAACTTTATGAAGCAAG 57.613 33.333 0.00 0.00 36.29 4.01
4492 9462 8.567948 TGAAACTCTAAACTTTATGAAGCAAGG 58.432 33.333 0.00 0.00 36.29 3.61
4493 9463 8.691661 AAACTCTAAACTTTATGAAGCAAGGA 57.308 30.769 0.00 0.00 36.29 3.36
4494 9464 8.691661 AACTCTAAACTTTATGAAGCAAGGAA 57.308 30.769 0.00 0.00 36.29 3.36
4495 9465 8.691661 ACTCTAAACTTTATGAAGCAAGGAAA 57.308 30.769 0.00 0.00 36.29 3.13
4538 9508 4.940046 ACAACATCTGAGGAGTAGCAAATG 59.060 41.667 0.00 0.00 0.00 2.32
4572 9546 8.029522 AGGTATTATCATACACGCATAGACAAG 58.970 37.037 0.00 0.00 37.59 3.16
4588 9562 9.664332 GCATAGACAAGTAGGAATCATCAATAT 57.336 33.333 0.00 0.00 0.00 1.28
4591 9565 8.267620 AGACAAGTAGGAATCATCAATATCCA 57.732 34.615 0.00 0.00 34.30 3.41
4653 9628 3.690475 TGCTTCATGCTTCTTCAGAGA 57.310 42.857 0.00 0.00 43.37 3.10
4681 9656 6.235664 TGTTACTCAATTTGTAGTCCCCTTC 58.764 40.000 0.00 0.00 0.00 3.46
4733 9708 7.308169 CGGCAAACACATACATCTGATCATATT 60.308 37.037 0.00 0.00 0.00 1.28
4746 9721 6.903516 TCTGATCATATTTCTGGTCAACCAT 58.096 36.000 1.58 0.00 46.46 3.55
4749 9724 4.858850 TCATATTTCTGGTCAACCATGCT 58.141 39.130 1.58 0.00 46.46 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.605589 CACTGACTCCTTCTTCGGCT 59.394 55.000 0.00 0.00 0.00 5.52
216 224 2.594303 CAGGGTTGGTCAGCGCAA 60.594 61.111 11.47 0.00 0.00 4.85
243 252 3.801997 AGCCCTGCCTTGGATCGG 61.802 66.667 0.00 0.00 0.00 4.18
277 286 2.256158 CCGCCGTCGTTCTACACA 59.744 61.111 0.00 0.00 0.00 3.72
281 293 4.465512 GTCGCCGCCGTCGTTCTA 62.466 66.667 0.00 0.00 35.54 2.10
314 353 1.736681 GTAGAAGACGGTGTACTCGCT 59.263 52.381 8.64 5.23 0.00 4.93
319 358 1.817447 AGCTGGTAGAAGACGGTGTAC 59.183 52.381 0.00 0.00 0.00 2.90
327 366 1.038130 GCCGAGGAGCTGGTAGAAGA 61.038 60.000 0.00 0.00 0.00 2.87
424 471 8.862325 TGAGGCGGTTTCATTCATATTTATAT 57.138 30.769 0.00 0.00 0.00 0.86
427 474 7.581213 ATTGAGGCGGTTTCATTCATATTTA 57.419 32.000 0.00 0.00 0.00 1.40
474 523 3.874392 AATTGGGCTCAAATTCGAAGG 57.126 42.857 1.42 0.00 36.36 3.46
501 553 2.207924 ACCCAGACGCCGTTTCTCT 61.208 57.895 0.00 0.00 0.00 3.10
504 556 2.280592 ACACCCAGACGCCGTTTC 60.281 61.111 0.00 0.00 0.00 2.78
584 637 3.207777 AGGGACTGAAATAGAGCCTCCTA 59.792 47.826 0.00 0.00 37.18 2.94
615 671 1.934220 TAGAGCGTCTCCAGCCGTTG 61.934 60.000 3.66 0.00 34.64 4.10
628 686 3.859386 GGCATTTCCAATTGTTTAGAGCG 59.141 43.478 4.43 0.00 34.01 5.03
636 694 9.737844 ATTATTGTTTAAGGCATTTCCAATTGT 57.262 25.926 4.43 0.00 37.29 2.71
641 699 9.660180 GGTAAATTATTGTTTAAGGCATTTCCA 57.340 29.630 0.00 0.00 37.29 3.53
642 700 9.104965 GGGTAAATTATTGTTTAAGGCATTTCC 57.895 33.333 0.00 0.00 0.00 3.13
643 701 9.104965 GGGGTAAATTATTGTTTAAGGCATTTC 57.895 33.333 0.00 0.00 0.00 2.17
644 702 8.831738 AGGGGTAAATTATTGTTTAAGGCATTT 58.168 29.630 0.00 0.00 0.00 2.32
645 703 8.387333 AGGGGTAAATTATTGTTTAAGGCATT 57.613 30.769 0.00 0.00 0.00 3.56
646 704 7.988249 AGGGGTAAATTATTGTTTAAGGCAT 57.012 32.000 0.00 0.00 0.00 4.40
647 705 7.676468 AGAAGGGGTAAATTATTGTTTAAGGCA 59.324 33.333 0.00 0.00 0.00 4.75
648 706 8.074613 AGAAGGGGTAAATTATTGTTTAAGGC 57.925 34.615 0.00 0.00 0.00 4.35
657 715 9.502091 GCAAAAAGAAAGAAGGGGTAAATTATT 57.498 29.630 0.00 0.00 0.00 1.40
658 716 8.100791 GGCAAAAAGAAAGAAGGGGTAAATTAT 58.899 33.333 0.00 0.00 0.00 1.28
659 717 7.071321 TGGCAAAAAGAAAGAAGGGGTAAATTA 59.929 33.333 0.00 0.00 0.00 1.40
660 718 6.126623 TGGCAAAAAGAAAGAAGGGGTAAATT 60.127 34.615 0.00 0.00 0.00 1.82
661 719 5.368230 TGGCAAAAAGAAAGAAGGGGTAAAT 59.632 36.000 0.00 0.00 0.00 1.40
662 720 4.717280 TGGCAAAAAGAAAGAAGGGGTAAA 59.283 37.500 0.00 0.00 0.00 2.01
663 721 4.100344 GTGGCAAAAAGAAAGAAGGGGTAA 59.900 41.667 0.00 0.00 0.00 2.85
664 722 3.639561 GTGGCAAAAAGAAAGAAGGGGTA 59.360 43.478 0.00 0.00 0.00 3.69
665 723 2.434336 GTGGCAAAAAGAAAGAAGGGGT 59.566 45.455 0.00 0.00 0.00 4.95
666 724 2.700371 AGTGGCAAAAAGAAAGAAGGGG 59.300 45.455 0.00 0.00 0.00 4.79
667 725 4.100035 AGAAGTGGCAAAAAGAAAGAAGGG 59.900 41.667 0.00 0.00 0.00 3.95
668 726 5.268118 AGAAGTGGCAAAAAGAAAGAAGG 57.732 39.130 0.00 0.00 0.00 3.46
669 727 9.965824 TTATAAGAAGTGGCAAAAAGAAAGAAG 57.034 29.630 0.00 0.00 0.00 2.85
670 728 9.965824 CTTATAAGAAGTGGCAAAAAGAAAGAA 57.034 29.630 6.64 0.00 0.00 2.52
686 744 2.802057 CGCGGGACCCACTTATAAGAAG 60.802 54.545 19.38 10.47 0.00 2.85
693 752 1.756408 TTTCACGCGGGACCCACTTA 61.756 55.000 12.52 0.00 0.00 2.24
734 793 1.538047 CAGTGTCACTCAATTGGGGG 58.462 55.000 10.75 5.55 0.00 5.40
735 794 1.073763 TCCAGTGTCACTCAATTGGGG 59.926 52.381 10.75 4.13 35.25 4.96
745 804 0.605589 CCTCTCCACTCCAGTGTCAC 59.394 60.000 5.99 0.00 44.21 3.67
769 832 1.616374 GAGAGAGATGGGGAACGATCC 59.384 57.143 2.47 2.47 45.76 3.36
843 907 3.551407 GGGGAGGATCGGAGCACC 61.551 72.222 0.00 0.00 34.37 5.01
844 908 2.764128 TGGGGAGGATCGGAGCAC 60.764 66.667 0.00 0.00 34.37 4.40
845 909 2.444706 CTGGGGAGGATCGGAGCA 60.445 66.667 0.00 0.00 34.37 4.26
846 910 3.934962 GCTGGGGAGGATCGGAGC 61.935 72.222 0.00 0.00 34.37 4.70
848 912 4.137615 TCGCTGGGGAGGATCGGA 62.138 66.667 0.00 0.00 34.37 4.55
849 913 3.917760 GTCGCTGGGGAGGATCGG 61.918 72.222 0.00 0.00 34.37 4.18
850 914 4.271816 CGTCGCTGGGGAGGATCG 62.272 72.222 1.97 0.00 34.37 3.69
851 915 4.593864 GCGTCGCTGGGGAGGATC 62.594 72.222 10.68 0.00 0.00 3.36
881 960 3.791586 GAGGTGCAGGGGAGGAGC 61.792 72.222 0.00 0.00 0.00 4.70
882 961 2.040278 AGAGGTGCAGGGGAGGAG 59.960 66.667 0.00 0.00 0.00 3.69
886 965 2.997315 CGTGAGAGGTGCAGGGGA 60.997 66.667 0.00 0.00 0.00 4.81
889 968 2.125753 GAGCGTGAGAGGTGCAGG 60.126 66.667 0.00 0.00 0.00 4.85
892 971 1.520342 GGATGAGCGTGAGAGGTGC 60.520 63.158 0.00 0.00 0.00 5.01
894 973 0.534412 CAAGGATGAGCGTGAGAGGT 59.466 55.000 0.00 0.00 0.00 3.85
895 974 0.534412 ACAAGGATGAGCGTGAGAGG 59.466 55.000 0.00 0.00 0.00 3.69
899 978 1.596934 GGGACAAGGATGAGCGTGA 59.403 57.895 0.00 0.00 0.00 4.35
900 979 1.450312 GGGGACAAGGATGAGCGTG 60.450 63.158 0.00 0.00 0.00 5.34
901 980 2.990479 GGGGACAAGGATGAGCGT 59.010 61.111 0.00 0.00 0.00 5.07
903 982 2.190578 CCGGGGACAAGGATGAGC 59.809 66.667 0.00 0.00 0.00 4.26
904 983 2.746375 CCCCGGGGACAAGGATGAG 61.746 68.421 38.41 1.08 37.50 2.90
905 984 2.690881 CCCCGGGGACAAGGATGA 60.691 66.667 38.41 0.00 37.50 2.92
906 985 4.506255 GCCCCGGGGACAAGGATG 62.506 72.222 44.86 14.03 37.50 3.51
936 1015 2.680251 GCTCCTAAGCCTAACCCTAGT 58.320 52.381 0.00 0.00 43.10 2.57
975 1055 4.208686 ATCGAGAACGCGGGAGGC 62.209 66.667 12.47 0.00 39.58 4.70
977 1057 2.352457 CGATCGAGAACGCGGGAG 60.352 66.667 10.26 0.00 39.58 4.30
978 1058 2.820922 TCGATCGAGAACGCGGGA 60.821 61.111 15.15 0.00 39.58 5.14
980 1060 2.651232 GGTCGATCGAGAACGCGG 60.651 66.667 20.09 0.00 39.58 6.46
981 1061 1.934956 CAGGTCGATCGAGAACGCG 60.935 63.158 20.09 3.53 39.58 6.01
984 1064 3.626154 GGTCAGGTCGATCGAGAAC 57.374 57.895 20.09 11.69 0.00 3.01
990 1070 4.570663 CGGGCGGTCAGGTCGATC 62.571 72.222 0.00 0.00 0.00 3.69
1026 3783 1.067776 AGAAAATCAAGCAGCAGCAGC 60.068 47.619 3.17 0.46 45.49 5.25
1039 3841 4.769215 CAGCAAGCAAGCAAAAGAAAATC 58.231 39.130 3.19 0.00 36.85 2.17
1040 3842 3.002965 GCAGCAAGCAAGCAAAAGAAAAT 59.997 39.130 3.19 0.00 44.79 1.82
1041 3843 2.352342 GCAGCAAGCAAGCAAAAGAAAA 59.648 40.909 3.19 0.00 44.79 2.29
1042 3844 1.935199 GCAGCAAGCAAGCAAAAGAAA 59.065 42.857 3.19 0.00 44.79 2.52
1043 3845 1.574134 GCAGCAAGCAAGCAAAAGAA 58.426 45.000 3.19 0.00 44.79 2.52
1044 3846 3.277652 GCAGCAAGCAAGCAAAAGA 57.722 47.368 3.19 0.00 44.79 2.52
1058 3860 3.379445 AGCAACCCAGCATGCAGC 61.379 61.111 21.98 13.07 44.95 5.25
1059 3861 2.571757 CAGCAACCCAGCATGCAG 59.428 61.111 21.98 12.49 44.95 4.41
1060 3862 3.687102 GCAGCAACCCAGCATGCA 61.687 61.111 21.98 0.00 44.95 3.96
1061 3863 4.446413 GGCAGCAACCCAGCATGC 62.446 66.667 10.51 10.51 42.87 4.06
1062 3864 2.678934 AGGCAGCAACCCAGCATG 60.679 61.111 0.00 0.00 36.85 4.06
1063 3865 2.678934 CAGGCAGCAACCCAGCAT 60.679 61.111 0.00 0.00 36.85 3.79
1074 3876 1.876322 GCTAGGATGTTAGCAGGCAG 58.124 55.000 0.44 0.00 44.30 4.85
1083 3885 0.541392 TGGATGCGTGCTAGGATGTT 59.459 50.000 5.28 0.00 0.00 2.71
1085 3887 0.882042 GGTGGATGCGTGCTAGGATG 60.882 60.000 0.00 0.00 0.00 3.51
1095 3897 2.537560 GCCAGATTCGGTGGATGCG 61.538 63.158 0.00 0.00 37.23 4.73
1097 3899 2.537560 GCGCCAGATTCGGTGGATG 61.538 63.158 0.00 0.00 37.23 3.51
1100 3902 3.197790 CTGCGCCAGATTCGGTGG 61.198 66.667 4.18 0.16 37.02 4.61
1103 3905 1.522355 ATGTCTGCGCCAGATTCGG 60.522 57.895 4.18 0.00 42.73 4.30
1113 3918 0.378257 CGAAATTCCCCATGTCTGCG 59.622 55.000 0.00 0.00 0.00 5.18
1140 3945 4.999950 TCTTTGACTGAAGAAGAAGCATCC 59.000 41.667 0.00 0.00 32.95 3.51
1147 3952 3.134623 TGTGCCTCTTTGACTGAAGAAGA 59.865 43.478 0.00 0.00 35.38 2.87
1148 3953 3.470709 TGTGCCTCTTTGACTGAAGAAG 58.529 45.455 0.00 0.00 35.38 2.85
1149 3954 3.558931 TGTGCCTCTTTGACTGAAGAA 57.441 42.857 0.00 0.00 35.38 2.52
1167 3975 2.795329 CTGGTTGCTGATACCCTTTGT 58.205 47.619 0.00 0.00 34.66 2.83
1190 3998 1.676967 CTTGAGTCCTTGGGCCTGC 60.677 63.158 4.53 0.00 0.00 4.85
1193 4001 1.301293 CTCCTTGAGTCCTTGGGCC 59.699 63.158 0.00 0.00 0.00 5.80
1268 4113 4.386867 TGTATACTACCAGCTGAGCAAC 57.613 45.455 17.39 5.49 0.00 4.17
1271 4116 5.010112 TGAGAATGTATACTACCAGCTGAGC 59.990 44.000 17.39 0.00 0.00 4.26
1272 4117 6.442952 GTGAGAATGTATACTACCAGCTGAG 58.557 44.000 17.39 8.22 0.00 3.35
1277 4122 6.716934 AGTGGTGAGAATGTATACTACCAG 57.283 41.667 4.17 0.00 37.40 4.00
1322 4167 1.895798 TCAGGGACTCAACTGCACTAG 59.104 52.381 0.00 0.00 34.60 2.57
1323 4168 1.895798 CTCAGGGACTCAACTGCACTA 59.104 52.381 0.00 0.00 34.60 2.74
1324 4169 0.683973 CTCAGGGACTCAACTGCACT 59.316 55.000 0.00 0.00 34.60 4.40
1325 4170 0.681733 TCTCAGGGACTCAACTGCAC 59.318 55.000 0.00 0.00 34.60 4.57
1326 4171 0.972134 CTCTCAGGGACTCAACTGCA 59.028 55.000 0.00 0.00 34.60 4.41
1330 4175 2.834549 TCCAATCTCTCAGGGACTCAAC 59.165 50.000 0.00 0.00 34.60 3.18
1332 4177 2.461695 GTCCAATCTCTCAGGGACTCA 58.538 52.381 0.00 0.00 44.99 3.41
1336 4181 1.623557 CCAGGTCCAATCTCTCAGGGA 60.624 57.143 0.00 0.00 0.00 4.20
1337 4182 0.835941 CCAGGTCCAATCTCTCAGGG 59.164 60.000 0.00 0.00 0.00 4.45
1371 4787 9.793252 CAATCAAATTAGGAATCTAACAACTGG 57.207 33.333 0.00 0.00 38.19 4.00
1377 4793 9.788960 GTTCACCAATCAAATTAGGAATCTAAC 57.211 33.333 0.00 0.00 38.19 2.34
1380 4796 6.953520 TGGTTCACCAATCAAATTAGGAATCT 59.046 34.615 0.00 0.00 44.35 2.40
1403 4819 1.396653 GCCATCTCCAACCAATCTGG 58.603 55.000 0.00 0.00 45.02 3.86
1463 4879 2.741092 GAGGCAGACGTGGTTCCA 59.259 61.111 0.00 0.00 0.00 3.53
1490 4906 0.620556 TGGAAGGCCTTGGAGATGAC 59.379 55.000 26.25 5.23 34.31 3.06
1525 4941 3.190535 CCAAAATCGGTAAGGACACCTTG 59.809 47.826 12.56 0.00 44.44 3.61
1556 4997 0.895530 TGTCCACTCTTGATCCCGAC 59.104 55.000 0.00 0.00 0.00 4.79
1642 5085 9.813446 CAAGTACCCACTACTAGTAATTTTAGG 57.187 37.037 3.76 2.41 34.26 2.69
1660 5103 3.171528 AGTCCCTAGTTGACAAGTACCC 58.828 50.000 11.07 0.00 35.15 3.69
1661 5104 4.886496 AAGTCCCTAGTTGACAAGTACC 57.114 45.455 11.07 0.00 35.15 3.34
1825 5309 8.713737 TCAAAATTGAGATAGACAGATCACAG 57.286 34.615 0.00 0.00 29.75 3.66
1826 5310 9.676861 AATCAAAATTGAGATAGACAGATCACA 57.323 29.630 1.98 0.00 41.08 3.58
1877 5399 6.657875 AGCAAGCAAAGGAGAGATAGTATTT 58.342 36.000 0.00 0.00 0.00 1.40
2121 5643 3.667497 TTCTTCTGCACGATCTTGTCT 57.333 42.857 0.73 0.00 0.00 3.41
2244 5766 1.200716 CGCCGACAGACTGGTAGTTTA 59.799 52.381 7.51 0.00 0.00 2.01
2263 5813 7.769272 AATTACAAATGGCATGGAAATAACG 57.231 32.000 0.00 0.00 0.00 3.18
2498 6048 4.593206 AGGCCTTGGAGATAATATCGTCAA 59.407 41.667 0.00 9.56 0.00 3.18
2532 6082 3.852858 ATCCTTCCCTGGGTGAAATTT 57.147 42.857 13.56 0.00 0.00 1.82
2535 6085 4.965283 AATTATCCTTCCCTGGGTGAAA 57.035 40.909 13.56 0.00 0.00 2.69
2625 6175 9.804977 ATTCCTATTTATTGATTAAGCTCTGCT 57.195 29.630 0.00 0.00 42.56 4.24
2724 6278 8.749354 AGTTGATGAATGGACCTATTTAAAACC 58.251 33.333 0.00 0.00 0.00 3.27
2776 6330 3.542704 GTCAGCTACATAGACGTTCGTTG 59.457 47.826 0.00 0.00 0.00 4.10
2820 6374 4.954092 ACAAATGCTAGCTAAAGTCAGC 57.046 40.909 17.23 0.00 42.12 4.26
2821 6375 8.887717 AGAAATACAAATGCTAGCTAAAGTCAG 58.112 33.333 17.23 0.57 0.00 3.51
2822 6376 8.792830 AGAAATACAAATGCTAGCTAAAGTCA 57.207 30.769 17.23 0.00 0.00 3.41
2824 6378 9.667107 TGTAGAAATACAAATGCTAGCTAAAGT 57.333 29.630 17.23 11.82 0.00 2.66
2842 6424 9.503427 GAAACTGCGCTATTTAAATGTAGAAAT 57.497 29.630 9.73 0.00 0.00 2.17
2862 6444 5.611374 TCTCTGGTTAACTGAAGGAAACTG 58.389 41.667 5.42 0.00 42.68 3.16
2954 6538 3.506398 TCATAGCATATCGGGGTCTCAA 58.494 45.455 0.00 0.00 0.00 3.02
2962 6546 4.725790 TGGACAGATCATAGCATATCGG 57.274 45.455 0.00 0.00 0.00 4.18
3002 6648 8.142551 ACCTATTTAAAGAGCCTAGTTGATACG 58.857 37.037 4.25 0.00 0.00 3.06
3031 6677 6.264744 CCTCTCCATTGCAGTTGATGAATAAT 59.735 38.462 0.00 0.00 0.00 1.28
3032 6678 5.591472 CCTCTCCATTGCAGTTGATGAATAA 59.409 40.000 0.00 0.00 0.00 1.40
3033 6679 5.128205 CCTCTCCATTGCAGTTGATGAATA 58.872 41.667 0.00 0.00 0.00 1.75
3048 6694 4.927267 TTGTATTGTTGGACCTCTCCAT 57.073 40.909 0.00 0.00 46.64 3.41
3140 6796 6.098838 TGAAGCTTGTATGGATAGATCACAGT 59.901 38.462 2.10 0.00 0.00 3.55
3141 6797 6.519382 TGAAGCTTGTATGGATAGATCACAG 58.481 40.000 2.10 0.00 0.00 3.66
3157 6815 3.672808 AGGTCTTGACATCTGAAGCTTG 58.327 45.455 2.10 0.00 0.00 4.01
3158 6816 3.616076 CGAGGTCTTGACATCTGAAGCTT 60.616 47.826 12.51 0.00 0.00 3.74
3252 6914 3.555117 TTCCTCCCCTACAACAGTAGT 57.445 47.619 0.00 0.00 34.70 2.73
3255 6917 1.916181 CCATTCCTCCCCTACAACAGT 59.084 52.381 0.00 0.00 0.00 3.55
3278 6940 0.243095 GTGGTAGGAGAGAAACGCGT 59.757 55.000 5.58 5.58 0.00 6.01
3345 7007 0.915872 TGGTGATCATGTGGAGCCCT 60.916 55.000 0.00 0.00 0.00 5.19
3356 7018 3.009026 CGACAATGGATGTTGGTGATCA 58.991 45.455 0.00 0.00 44.12 2.92
3358 7020 2.749076 CACGACAATGGATGTTGGTGAT 59.251 45.455 0.00 0.00 46.21 3.06
3361 7023 2.559698 TCACGACAATGGATGTTGGT 57.440 45.000 0.00 0.00 46.21 3.67
3364 7026 2.164219 GGCAATCACGACAATGGATGTT 59.836 45.455 0.00 0.00 44.12 2.71
3375 7037 1.296392 CACCTCCTGGCAATCACGA 59.704 57.895 0.00 0.00 36.63 4.35
3387 7049 3.316573 CTTCCACCCGAGCACCTCC 62.317 68.421 0.00 0.00 0.00 4.30
3486 7148 8.087750 TGAATCTTTTGTTTATTTGCCTACCAG 58.912 33.333 0.00 0.00 0.00 4.00
3566 7291 4.495422 ACTGCTACTTCAAGAACATACGG 58.505 43.478 0.00 0.00 0.00 4.02
3567 7292 5.287274 CAGACTGCTACTTCAAGAACATACG 59.713 44.000 0.00 0.00 0.00 3.06
3568 7293 6.159988 ACAGACTGCTACTTCAAGAACATAC 58.840 40.000 1.25 0.00 0.00 2.39
3569 7294 6.346477 ACAGACTGCTACTTCAAGAACATA 57.654 37.500 1.25 0.00 0.00 2.29
3570 7295 5.220710 ACAGACTGCTACTTCAAGAACAT 57.779 39.130 1.25 0.00 0.00 2.71
3571 7296 4.672587 ACAGACTGCTACTTCAAGAACA 57.327 40.909 1.25 0.00 0.00 3.18
3572 7297 4.212214 CCAACAGACTGCTACTTCAAGAAC 59.788 45.833 1.25 0.00 0.00 3.01
3573 7298 4.141711 ACCAACAGACTGCTACTTCAAGAA 60.142 41.667 1.25 0.00 0.00 2.52
3574 7299 3.388024 ACCAACAGACTGCTACTTCAAGA 59.612 43.478 1.25 0.00 0.00 3.02
3575 7300 3.733337 ACCAACAGACTGCTACTTCAAG 58.267 45.455 1.25 0.00 0.00 3.02
3576 7301 3.388024 AGACCAACAGACTGCTACTTCAA 59.612 43.478 1.25 0.00 0.00 2.69
3577 7302 2.965831 AGACCAACAGACTGCTACTTCA 59.034 45.455 1.25 0.00 0.00 3.02
3578 7303 3.669251 AGACCAACAGACTGCTACTTC 57.331 47.619 1.25 0.00 0.00 3.01
3579 7304 5.746990 ATAAGACCAACAGACTGCTACTT 57.253 39.130 1.25 4.62 0.00 2.24
3580 7305 5.746990 AATAAGACCAACAGACTGCTACT 57.253 39.130 1.25 0.00 0.00 2.57
3581 7306 5.351740 GGAAATAAGACCAACAGACTGCTAC 59.648 44.000 1.25 0.00 0.00 3.58
3582 7307 5.012664 TGGAAATAAGACCAACAGACTGCTA 59.987 40.000 1.25 0.00 32.93 3.49
3583 7308 4.202461 TGGAAATAAGACCAACAGACTGCT 60.202 41.667 1.25 0.00 32.93 4.24
3584 7309 4.072131 TGGAAATAAGACCAACAGACTGC 58.928 43.478 1.25 0.00 32.93 4.40
3585 7310 5.392380 GCATGGAAATAAGACCAACAGACTG 60.392 44.000 0.00 0.00 39.69 3.51
3586 7311 4.702131 GCATGGAAATAAGACCAACAGACT 59.298 41.667 0.00 0.00 39.69 3.24
3587 7312 4.142381 GGCATGGAAATAAGACCAACAGAC 60.142 45.833 0.00 0.00 39.69 3.51
3588 7313 4.016444 GGCATGGAAATAAGACCAACAGA 58.984 43.478 0.00 0.00 39.69 3.41
3589 7314 3.763360 TGGCATGGAAATAAGACCAACAG 59.237 43.478 0.00 0.00 39.69 3.16
3590 7315 3.772387 TGGCATGGAAATAAGACCAACA 58.228 40.909 0.00 0.00 39.69 3.33
3591 7316 5.343307 AATGGCATGGAAATAAGACCAAC 57.657 39.130 0.00 0.00 39.69 3.77
3592 7317 5.248020 ACAAATGGCATGGAAATAAGACCAA 59.752 36.000 0.00 0.00 39.69 3.67
3687 7439 8.628280 CCACACATTTTTAAAACCATCCATTTT 58.372 29.630 0.00 0.00 33.85 1.82
3704 7457 4.227197 TGGGGAAATACAACCACACATTT 58.773 39.130 0.00 0.00 34.41 2.32
3814 7576 3.076621 TGTCATGAGCCATCTGTTTGTC 58.923 45.455 0.00 0.00 0.00 3.18
3815 7577 3.144657 TGTCATGAGCCATCTGTTTGT 57.855 42.857 0.00 0.00 0.00 2.83
3816 7578 3.672511 GCTTGTCATGAGCCATCTGTTTG 60.673 47.826 0.00 0.00 34.06 2.93
3817 7579 2.490903 GCTTGTCATGAGCCATCTGTTT 59.509 45.455 0.00 0.00 34.06 2.83
3818 7580 2.089980 GCTTGTCATGAGCCATCTGTT 58.910 47.619 0.00 0.00 34.06 3.16
3819 7581 1.747709 GCTTGTCATGAGCCATCTGT 58.252 50.000 0.00 0.00 34.06 3.41
3826 7588 0.953727 TGTTGTGGCTTGTCATGAGC 59.046 50.000 0.00 0.00 39.41 4.26
3827 7589 1.948834 TGTGTTGTGGCTTGTCATGAG 59.051 47.619 0.00 0.00 0.00 2.90
3828 7590 2.049888 TGTGTTGTGGCTTGTCATGA 57.950 45.000 0.00 0.00 0.00 3.07
3829 7591 2.859538 GTTTGTGTTGTGGCTTGTCATG 59.140 45.455 0.00 0.00 0.00 3.07
3830 7592 2.495270 TGTTTGTGTTGTGGCTTGTCAT 59.505 40.909 0.00 0.00 0.00 3.06
3831 7593 1.889170 TGTTTGTGTTGTGGCTTGTCA 59.111 42.857 0.00 0.00 0.00 3.58
3832 7594 2.258755 GTGTTTGTGTTGTGGCTTGTC 58.741 47.619 0.00 0.00 0.00 3.18
3833 7595 1.615883 TGTGTTTGTGTTGTGGCTTGT 59.384 42.857 0.00 0.00 0.00 3.16
3834 7596 2.360553 TGTGTTTGTGTTGTGGCTTG 57.639 45.000 0.00 0.00 0.00 4.01
3835 7597 3.056250 TGAATGTGTTTGTGTTGTGGCTT 60.056 39.130 0.00 0.00 0.00 4.35
3836 7598 2.495270 TGAATGTGTTTGTGTTGTGGCT 59.505 40.909 0.00 0.00 0.00 4.75
3837 7599 2.886081 TGAATGTGTTTGTGTTGTGGC 58.114 42.857 0.00 0.00 0.00 5.01
3838 7600 4.050553 GGATGAATGTGTTTGTGTTGTGG 58.949 43.478 0.00 0.00 0.00 4.17
3839 7601 3.730215 CGGATGAATGTGTTTGTGTTGTG 59.270 43.478 0.00 0.00 0.00 3.33
3840 7602 3.629855 TCGGATGAATGTGTTTGTGTTGT 59.370 39.130 0.00 0.00 0.00 3.32
3841 7603 4.221926 TCGGATGAATGTGTTTGTGTTG 57.778 40.909 0.00 0.00 0.00 3.33
3842 7604 4.909696 TTCGGATGAATGTGTTTGTGTT 57.090 36.364 0.00 0.00 0.00 3.32
3843 7605 5.106317 GGTATTCGGATGAATGTGTTTGTGT 60.106 40.000 0.93 0.00 44.46 3.72
3844 7606 5.331902 GGTATTCGGATGAATGTGTTTGTG 58.668 41.667 0.93 0.00 44.46 3.33
3908 7705 7.759489 AGAAACTGCTTCATACCATTAACAA 57.241 32.000 0.00 0.00 36.40 2.83
3912 7709 8.079211 ACTCTAGAAACTGCTTCATACCATTA 57.921 34.615 0.00 0.00 36.40 1.90
3926 7723 8.073467 AGCTAAGCAAATCTACTCTAGAAACT 57.927 34.615 0.00 0.00 38.50 2.66
3939 7736 7.338440 ACGAAAATTCAAAGCTAAGCAAATC 57.662 32.000 0.00 0.00 0.00 2.17
3998 7795 3.053917 GGTAAAACCTAGGCCATTGGAGA 60.054 47.826 9.30 0.00 34.73 3.71
4004 7801 4.331159 AACATGGTAAAACCTAGGCCAT 57.669 40.909 9.30 10.38 39.58 4.40
4006 7803 4.400251 GGTAAACATGGTAAAACCTAGGCC 59.600 45.833 9.30 1.52 39.58 5.19
4007 7804 5.124936 CAGGTAAACATGGTAAAACCTAGGC 59.875 44.000 9.30 0.00 39.58 3.93
4008 7805 5.124936 GCAGGTAAACATGGTAAAACCTAGG 59.875 44.000 7.41 7.41 39.58 3.02
4017 7814 3.620427 ATCACGCAGGTAAACATGGTA 57.380 42.857 0.00 0.00 0.00 3.25
4019 7816 2.097466 GGAATCACGCAGGTAAACATGG 59.903 50.000 0.00 0.00 0.00 3.66
4020 7817 2.746904 TGGAATCACGCAGGTAAACATG 59.253 45.455 0.00 0.00 0.00 3.21
4070 8239 4.386413 CTGGACCAACAGGACAGC 57.614 61.111 0.00 0.00 34.84 4.40
4118 8287 2.511600 AGCGACGCAATGGCCTAC 60.512 61.111 23.70 0.00 36.38 3.18
4119 8288 2.511373 CAGCGACGCAATGGCCTA 60.511 61.111 23.70 0.00 36.38 3.93
4166 8335 3.493873 CCTGCTGCTATCATCTGCTTGTA 60.494 47.826 0.00 0.00 0.00 2.41
4183 8352 1.856539 ATAACACCAGCCAGCCTGCT 61.857 55.000 0.00 0.00 44.00 4.24
4184 8353 0.967380 AATAACACCAGCCAGCCTGC 60.967 55.000 0.00 0.00 40.36 4.85
4185 8354 2.017049 GTAATAACACCAGCCAGCCTG 58.983 52.381 0.00 0.00 41.41 4.85
4186 8355 1.633432 TGTAATAACACCAGCCAGCCT 59.367 47.619 0.00 0.00 0.00 4.58
4187 8356 2.122783 TGTAATAACACCAGCCAGCC 57.877 50.000 0.00 0.00 0.00 4.85
4221 8436 6.737720 ATCTAGCAGAGTATTGGATGTGAA 57.262 37.500 0.00 0.00 0.00 3.18
4262 8482 2.434336 TGGCGTAGAAGTATTGGATGCT 59.566 45.455 0.00 0.00 0.00 3.79
4263 8483 2.833794 TGGCGTAGAAGTATTGGATGC 58.166 47.619 0.00 0.00 0.00 3.91
4267 8487 2.980568 TGGTTGGCGTAGAAGTATTGG 58.019 47.619 0.00 0.00 0.00 3.16
4268 8488 4.188462 TCATGGTTGGCGTAGAAGTATTG 58.812 43.478 0.00 0.00 0.00 1.90
4271 8491 3.965379 TTCATGGTTGGCGTAGAAGTA 57.035 42.857 0.00 0.00 0.00 2.24
4273 8493 3.074412 AGTTTCATGGTTGGCGTAGAAG 58.926 45.455 0.00 0.00 0.00 2.85
4274 8494 3.071479 GAGTTTCATGGTTGGCGTAGAA 58.929 45.455 0.00 0.00 0.00 2.10
4275 8495 2.301870 AGAGTTTCATGGTTGGCGTAGA 59.698 45.455 0.00 0.00 0.00 2.59
4287 9247 7.435488 CCGTAGATTCATCGTTTAGAGTTTCAT 59.565 37.037 0.00 0.00 0.00 2.57
4307 9268 3.496884 GTGTTGATTGTTTGCTCCGTAGA 59.503 43.478 0.00 0.00 0.00 2.59
4311 9272 2.772568 TGTGTTGATTGTTTGCTCCG 57.227 45.000 0.00 0.00 0.00 4.63
4315 9276 5.042593 TCAGATGTTGTGTTGATTGTTTGC 58.957 37.500 0.00 0.00 0.00 3.68
4325 9286 4.450976 TGCTACTGTTCAGATGTTGTGTT 58.549 39.130 6.83 0.00 0.00 3.32
4479 9449 6.431543 TGTTCCGTATTTCCTTGCTTCATAAA 59.568 34.615 0.00 0.00 0.00 1.40
4480 9450 5.941058 TGTTCCGTATTTCCTTGCTTCATAA 59.059 36.000 0.00 0.00 0.00 1.90
4482 9452 4.331968 TGTTCCGTATTTCCTTGCTTCAT 58.668 39.130 0.00 0.00 0.00 2.57
4483 9453 3.745799 TGTTCCGTATTTCCTTGCTTCA 58.254 40.909 0.00 0.00 0.00 3.02
4484 9454 4.759516 TTGTTCCGTATTTCCTTGCTTC 57.240 40.909 0.00 0.00 0.00 3.86
4485 9455 5.722021 ATTTGTTCCGTATTTCCTTGCTT 57.278 34.783 0.00 0.00 0.00 3.91
4486 9456 6.827586 TTATTTGTTCCGTATTTCCTTGCT 57.172 33.333 0.00 0.00 0.00 3.91
4487 9457 7.254852 TGATTATTTGTTCCGTATTTCCTTGC 58.745 34.615 0.00 0.00 0.00 4.01
4488 9458 9.801873 AATGATTATTTGTTCCGTATTTCCTTG 57.198 29.630 0.00 0.00 0.00 3.61
4527 9497 3.058224 ACCTTTGAACGCATTTGCTACTC 60.058 43.478 0.51 0.00 39.32 2.59
4538 9508 6.352526 CGTGTATGATAATACCTTTGAACGC 58.647 40.000 0.00 0.00 0.00 4.84
4588 9562 6.985653 TTTCCCTGAAATTGTTGTAATGGA 57.014 33.333 0.00 0.00 0.00 3.41
4597 9571 9.671279 GATGGATTTTTATTTCCCTGAAATTGT 57.329 29.630 7.31 0.00 41.64 2.71
4598 9572 9.112725 GGATGGATTTTTATTTCCCTGAAATTG 57.887 33.333 7.31 0.00 41.64 2.32
4601 9575 9.554053 TTAGGATGGATTTTTATTTCCCTGAAA 57.446 29.630 0.00 0.00 35.94 2.69
4653 9628 6.884836 GGGGACTACAAATTGAGTAACAAGAT 59.115 38.462 0.00 0.00 42.02 2.40
4681 9656 1.305549 ATGGAAAAGCTGGGCCAGG 60.306 57.895 33.43 16.27 33.26 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.