Multiple sequence alignment - TraesCS7A01G011600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G011600 chr7A 100.000 3843 0 0 1 3843 5021731 5025573 0.000000e+00 7097.0
1 TraesCS7A01G011600 chr7A 89.128 1766 184 5 1615 3376 5352766 5351005 0.000000e+00 2191.0
2 TraesCS7A01G011600 chr7A 86.882 1761 196 24 1615 3357 5611387 5613130 0.000000e+00 1940.0
3 TraesCS7A01G011600 chr7A 87.409 1652 192 12 1615 3261 5000942 5002582 0.000000e+00 1884.0
4 TraesCS7A01G011600 chr7A 86.121 1686 201 19 1617 3297 5747478 5745821 0.000000e+00 1786.0
5 TraesCS7A01G011600 chr7A 88.106 1135 125 7 2100 3230 5772858 5771730 0.000000e+00 1339.0
6 TraesCS7A01G011600 chr7A 88.474 963 102 7 671 1625 5777555 5776594 0.000000e+00 1155.0
7 TraesCS7A01G011600 chr7A 97.601 667 16 0 3 669 5015986 5016652 0.000000e+00 1144.0
8 TraesCS7A01G011600 chr7A 87.954 963 102 11 669 1625 5353753 5352799 0.000000e+00 1123.0
9 TraesCS7A01G011600 chr7A 86.506 956 115 8 669 1620 5748464 5747519 0.000000e+00 1038.0
10 TraesCS7A01G011600 chr7A 86.279 962 114 6 669 1625 5610406 5611354 0.000000e+00 1029.0
11 TraesCS7A01G011600 chr7A 86.297 956 117 8 669 1620 4999958 5000903 0.000000e+00 1027.0
12 TraesCS7A01G011600 chr7A 90.104 192 18 1 1430 1620 6103603 6103794 8.240000e-62 248.0
13 TraesCS7A01G011600 chr7A 91.758 182 5 3 3609 3789 5350858 5350686 1.070000e-60 244.0
14 TraesCS7A01G011600 chr7A 83.544 237 13 8 3607 3842 5745928 5745717 8.420000e-47 198.0
15 TraesCS7A01G011600 chr4A 87.771 1660 186 12 1615 3264 737853967 737852315 0.000000e+00 1925.0
16 TraesCS7A01G011600 chr4A 87.545 1654 187 11 1615 3261 738352121 738353762 0.000000e+00 1895.0
17 TraesCS7A01G011600 chr4A 87.025 1657 202 8 1615 3264 738523366 738521716 0.000000e+00 1857.0
18 TraesCS7A01G011600 chr4A 87.168 1621 179 22 1615 3230 738391250 738389654 0.000000e+00 1814.0
19 TraesCS7A01G011600 chr4A 88.450 961 104 5 669 1625 737846448 737845491 0.000000e+00 1153.0
20 TraesCS7A01G011600 chr4A 88.278 964 106 5 669 1625 738351125 738352088 0.000000e+00 1147.0
21 TraesCS7A01G011600 chr4A 87.396 841 103 2 669 1506 738392315 738391475 0.000000e+00 963.0
22 TraesCS7A01G011600 chr4A 89.220 705 68 6 1615 2317 737845458 737844760 0.000000e+00 874.0
23 TraesCS7A01G011600 chrUn 87.930 1135 127 7 2100 3230 228698046 228696918 0.000000e+00 1328.0
24 TraesCS7A01G011600 chr2D 86.482 1154 152 4 2206 3357 614368090 614369241 0.000000e+00 1264.0
25 TraesCS7A01G011600 chr2D 84.561 285 30 5 672 956 614353064 614353334 1.760000e-68 270.0
26 TraesCS7A01G011600 chr7D 87.368 950 107 11 1615 2559 5031645 5032586 0.000000e+00 1077.0
27 TraesCS7A01G011600 chr7D 88.270 844 93 5 671 1509 5024984 5025826 0.000000e+00 1005.0
28 TraesCS7A01G011600 chr7D 93.689 206 8 1 3377 3582 477029751 477029951 1.730000e-78 303.0
29 TraesCS7A01G011600 chr1A 88.509 644 66 7 29 668 27220726 27220087 0.000000e+00 773.0
30 TraesCS7A01G011600 chr1A 87.425 668 77 6 4 668 495586285 495586948 0.000000e+00 761.0
31 TraesCS7A01G011600 chr5A 88.199 644 68 7 29 669 464081096 464080458 0.000000e+00 761.0
32 TraesCS7A01G011600 chr5A 87.907 645 68 9 29 668 691139314 691139953 0.000000e+00 750.0
33 TraesCS7A01G011600 chr5A 92.823 209 10 1 3374 3582 18096557 18096760 8.070000e-77 298.0
34 TraesCS7A01G011600 chr5A 95.918 49 1 1 1 48 27495169 27495217 1.140000e-10 78.7
35 TraesCS7A01G011600 chr2A 88.062 645 69 6 29 669 760409596 760408956 0.000000e+00 758.0
36 TraesCS7A01G011600 chr2A 96.000 50 1 1 1 49 730793534 730793485 3.180000e-11 80.5
37 TraesCS7A01G011600 chr6A 88.062 645 66 10 29 668 441785082 441784444 0.000000e+00 754.0
38 TraesCS7A01G011600 chr6A 87.926 646 66 11 29 669 153048696 153049334 0.000000e+00 750.0
39 TraesCS7A01G011600 chr6A 94.000 50 2 1 1 49 79678029 79677980 1.480000e-09 75.0
40 TraesCS7A01G011600 chr6A 94.000 50 2 1 1 49 79686791 79686742 1.480000e-09 75.0
41 TraesCS7A01G011600 chr6A 94.000 50 2 1 1 49 86667762 86667713 1.480000e-09 75.0
42 TraesCS7A01G011600 chr6A 94.000 50 2 1 1 49 86675988 86675939 1.480000e-09 75.0
43 TraesCS7A01G011600 chr3A 86.826 668 81 6 4 668 642747351 642746688 0.000000e+00 739.0
44 TraesCS7A01G011600 chr4B 93.689 206 8 1 3377 3582 483761958 483761758 1.730000e-78 303.0
45 TraesCS7A01G011600 chr3B 93.689 206 8 1 3377 3582 331935206 331935406 1.730000e-78 303.0
46 TraesCS7A01G011600 chr7B 93.204 206 9 1 3377 3582 623111283 623111083 8.070000e-77 298.0
47 TraesCS7A01G011600 chr3D 92.754 207 14 1 3376 3582 587308274 587308479 8.070000e-77 298.0
48 TraesCS7A01G011600 chr1D 93.204 206 9 1 3377 3582 419022113 419022313 8.070000e-77 298.0
49 TraesCS7A01G011600 chr1D 92.754 207 10 1 3376 3582 323930388 323930187 1.040000e-75 294.0
50 TraesCS7A01G011600 chr5D 92.754 207 10 1 3376 3582 384736910 384737111 1.040000e-75 294.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G011600 chr7A 5021731 5025573 3842 False 7097.000000 7097 100.000000 1 3843 1 chr7A.!!$F2 3842
1 TraesCS7A01G011600 chr7A 5610406 5613130 2724 False 1484.500000 1940 86.580500 669 3357 2 chr7A.!!$F5 2688
2 TraesCS7A01G011600 chr7A 4999958 5002582 2624 False 1455.500000 1884 86.853000 669 3261 2 chr7A.!!$F4 2592
3 TraesCS7A01G011600 chr7A 5771730 5777555 5825 True 1247.000000 1339 88.290000 671 3230 2 chr7A.!!$R3 2559
4 TraesCS7A01G011600 chr7A 5350686 5353753 3067 True 1186.000000 2191 89.613333 669 3789 3 chr7A.!!$R1 3120
5 TraesCS7A01G011600 chr7A 5015986 5016652 666 False 1144.000000 1144 97.601000 3 669 1 chr7A.!!$F1 666
6 TraesCS7A01G011600 chr7A 5745717 5748464 2747 True 1007.333333 1786 85.390333 669 3842 3 chr7A.!!$R2 3173
7 TraesCS7A01G011600 chr4A 737852315 737853967 1652 True 1925.000000 1925 87.771000 1615 3264 1 chr4A.!!$R1 1649
8 TraesCS7A01G011600 chr4A 738521716 738523366 1650 True 1857.000000 1857 87.025000 1615 3264 1 chr4A.!!$R2 1649
9 TraesCS7A01G011600 chr4A 738351125 738353762 2637 False 1521.000000 1895 87.911500 669 3261 2 chr4A.!!$F1 2592
10 TraesCS7A01G011600 chr4A 738389654 738392315 2661 True 1388.500000 1814 87.282000 669 3230 2 chr4A.!!$R4 2561
11 TraesCS7A01G011600 chr4A 737844760 737846448 1688 True 1013.500000 1153 88.835000 669 2317 2 chr4A.!!$R3 1648
12 TraesCS7A01G011600 chrUn 228696918 228698046 1128 True 1328.000000 1328 87.930000 2100 3230 1 chrUn.!!$R1 1130
13 TraesCS7A01G011600 chr2D 614368090 614369241 1151 False 1264.000000 1264 86.482000 2206 3357 1 chr2D.!!$F2 1151
14 TraesCS7A01G011600 chr7D 5031645 5032586 941 False 1077.000000 1077 87.368000 1615 2559 1 chr7D.!!$F2 944
15 TraesCS7A01G011600 chr7D 5024984 5025826 842 False 1005.000000 1005 88.270000 671 1509 1 chr7D.!!$F1 838
16 TraesCS7A01G011600 chr1A 27220087 27220726 639 True 773.000000 773 88.509000 29 668 1 chr1A.!!$R1 639
17 TraesCS7A01G011600 chr1A 495586285 495586948 663 False 761.000000 761 87.425000 4 668 1 chr1A.!!$F1 664
18 TraesCS7A01G011600 chr5A 464080458 464081096 638 True 761.000000 761 88.199000 29 669 1 chr5A.!!$R1 640
19 TraesCS7A01G011600 chr5A 691139314 691139953 639 False 750.000000 750 87.907000 29 668 1 chr5A.!!$F3 639
20 TraesCS7A01G011600 chr2A 760408956 760409596 640 True 758.000000 758 88.062000 29 669 1 chr2A.!!$R2 640
21 TraesCS7A01G011600 chr6A 441784444 441785082 638 True 754.000000 754 88.062000 29 668 1 chr6A.!!$R5 639
22 TraesCS7A01G011600 chr6A 153048696 153049334 638 False 750.000000 750 87.926000 29 669 1 chr6A.!!$F1 640
23 TraesCS7A01G011600 chr3A 642746688 642747351 663 True 739.000000 739 86.826000 4 668 1 chr3A.!!$R1 664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
927 934 0.238553 GCTCTCTTCCAACCGCAAAC 59.761 55.0 0.0 0.0 0.00 2.93 F
1627 1756 0.108041 GATACCGCCCTTCGTTTCCA 60.108 55.0 0.0 0.0 36.19 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2261 5612 0.620556 AGATTTGAGATGGTGGCGGT 59.379 50.0 0.0 0.0 0.00 5.68 R
3520 6901 0.034896 AAGACCCGACTGACGCAATT 59.965 50.0 0.0 0.0 41.07 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 151 3.550678 GTGGTAAACGATCTCGGATGAAC 59.449 47.826 4.44 0.00 44.95 3.18
233 236 6.922247 TTTTGATCAGAGATCATCTTGAGC 57.078 37.500 10.20 7.67 35.47 4.26
257 261 1.800805 AATCTGTCTCGCAACACAGG 58.199 50.000 6.18 0.00 40.49 4.00
321 325 1.439228 CCACATCTCGCCTCGTGAT 59.561 57.895 0.00 0.00 40.00 3.06
529 533 4.009675 TCATAACTTTTGCATCCGAGCTT 58.990 39.130 0.00 0.00 34.99 3.74
676 680 0.810031 GAGCGTCAACACCGGCATAT 60.810 55.000 0.00 0.00 0.00 1.78
766 773 6.559810 TGCCAAATTTACACATGTAGTATGC 58.440 36.000 0.00 0.00 0.00 3.14
788 795 3.128242 CACTCAAGAGACATTTCATGGGC 59.872 47.826 3.73 0.00 33.60 5.36
789 796 2.353889 CTCAAGAGACATTTCATGGGCG 59.646 50.000 0.00 0.00 33.60 6.13
813 820 1.933853 CGCATCCCTAACTTGCAGTAC 59.066 52.381 0.00 0.00 36.15 2.73
824 831 3.679389 ACTTGCAGTACCTTGGAATGAG 58.321 45.455 0.00 0.00 0.00 2.90
837 844 5.484715 CTTGGAATGAGTTCGGTAAACCTA 58.515 41.667 0.00 0.00 38.76 3.08
852 859 6.401796 CGGTAAACCTAAGCACAATAGTTGAC 60.402 42.308 0.00 0.00 0.00 3.18
870 877 6.010219 AGTTGACTGGCCTTATGTTGTTAAT 58.990 36.000 3.32 0.00 0.00 1.40
887 894 9.177608 TGTTGTTAATATGATTCCTTCCTTGAG 57.822 33.333 0.00 0.00 0.00 3.02
927 934 0.238553 GCTCTCTTCCAACCGCAAAC 59.761 55.000 0.00 0.00 0.00 2.93
930 937 1.028905 CTCTTCCAACCGCAAACCAA 58.971 50.000 0.00 0.00 0.00 3.67
936 943 1.883275 CCAACCGCAAACCAATCACTA 59.117 47.619 0.00 0.00 0.00 2.74
950 957 6.362248 ACCAATCACTACCACATATTAACCC 58.638 40.000 0.00 0.00 0.00 4.11
1029 1036 4.048504 GGAGTTGGTTTTGGAATTTGACG 58.951 43.478 0.00 0.00 0.00 4.35
1078 1085 7.168219 TGAAACTCAACTATATGGTCAAGCTT 58.832 34.615 0.00 0.00 0.00 3.74
1174 1187 5.945784 ACAAGCTTCAGAAACCTATGCAATA 59.054 36.000 0.00 0.00 0.00 1.90
1197 1210 1.283321 AGAATCCTGGACCTTTCTGCC 59.717 52.381 9.64 0.00 0.00 4.85
1257 1270 1.303643 GCCCCAGTGTCCCTTGAAG 60.304 63.158 0.00 0.00 0.00 3.02
1309 1322 4.067192 CAATATCAGTGGAATCATGCCGA 58.933 43.478 0.00 0.00 0.00 5.54
1328 1341 1.728971 GAATCGGACAGCACACTTGAG 59.271 52.381 0.00 0.00 0.00 3.02
1333 1346 1.849976 GACAGCACACTTGAGCAGCC 61.850 60.000 1.43 0.00 34.00 4.85
1479 1492 5.655974 TGAGATTGGTATGCTTGGCAATTTA 59.344 36.000 0.00 0.00 43.62 1.40
1511 1596 1.151668 CTCGGAGGCAACAACTTGAG 58.848 55.000 0.00 0.00 41.41 3.02
1548 1633 9.614792 ACTGAAGAACATTTTACAAGTCTAACT 57.385 29.630 0.00 0.00 0.00 2.24
1581 1666 5.247337 GGATTTGGGTTTAAGTGGGAATTCA 59.753 40.000 7.93 0.00 0.00 2.57
1600 1685 7.556275 GGAATTCATTGAGGATTACAGTTGGTA 59.444 37.037 7.93 0.00 0.00 3.25
1627 1756 0.108041 GATACCGCCCTTCGTTTCCA 60.108 55.000 0.00 0.00 36.19 3.53
1647 1776 2.886523 CAGCATGGTTTCAGTTCCAAGA 59.113 45.455 0.00 0.00 37.27 3.02
1710 1840 6.126863 TGATAAACTTCCTGACTGGTTCAT 57.873 37.500 0.00 0.00 37.07 2.57
1733 1863 2.035832 ACTACATTTGCAAAGGCCACAC 59.964 45.455 22.79 0.00 40.13 3.82
1753 1883 3.438087 CACATCTGGACATCTCCAACAAC 59.562 47.826 0.00 0.00 46.63 3.32
1754 1884 3.072915 ACATCTGGACATCTCCAACAACA 59.927 43.478 0.00 0.00 46.63 3.33
1768 1898 2.979813 CAACAACAAAATCAGCGGTAGC 59.020 45.455 0.00 0.00 45.58 3.58
1856 1986 4.392138 GTGAAATCCCGAACTTACCAAGAG 59.608 45.833 0.00 0.00 0.00 2.85
1865 1995 5.919141 CCGAACTTACCAAGAGATATTACCG 59.081 44.000 0.00 0.00 0.00 4.02
1867 1997 6.417044 CGAACTTACCAAGAGATATTACCGTG 59.583 42.308 0.00 0.00 0.00 4.94
1976 2106 7.255942 CCAATCAAATAACTGGTCATATTCCCC 60.256 40.741 0.00 0.00 0.00 4.81
1998 2128 3.810310 ATCTCTCTGTAAAGCGGAAGG 57.190 47.619 0.00 0.00 31.00 3.46
2056 2186 3.714798 AGGGACAACTTCCTCACTGTTTA 59.285 43.478 0.00 0.00 45.09 2.01
2068 2198 4.065789 CTCACTGTTTAGGGGTGAAGAAC 58.934 47.826 0.00 0.00 39.11 3.01
2069 2199 3.456644 TCACTGTTTAGGGGTGAAGAACA 59.543 43.478 0.00 0.00 37.10 3.18
2070 2200 4.104102 TCACTGTTTAGGGGTGAAGAACAT 59.896 41.667 0.00 0.00 37.10 2.71
2201 5552 3.096092 GGAAGGTTGCCATTGTGGATTA 58.904 45.455 0.00 0.00 40.96 1.75
2207 5558 4.276926 GGTTGCCATTGTGGATTAGAGATC 59.723 45.833 0.00 0.00 40.96 2.75
2235 5586 8.529911 GGTTGAATTACGATTTCTACGTCTAAG 58.470 37.037 0.00 0.00 43.62 2.18
2418 5775 7.491372 TGACTCAAATTATGGTGATTACTCGAC 59.509 37.037 0.00 0.00 0.00 4.20
2420 5777 7.492669 ACTCAAATTATGGTGATTACTCGACTG 59.507 37.037 0.00 0.00 0.00 3.51
2423 5780 5.907866 TTATGGTGATTACTCGACTGTGA 57.092 39.130 0.00 0.00 0.00 3.58
2465 5822 2.237143 TCTGTGGTCATCAAGGGACATC 59.763 50.000 0.00 0.00 37.00 3.06
2720 6077 9.719355 TGTCAGATTTAAACTATTTGAGCTACA 57.281 29.630 0.00 0.00 0.00 2.74
2840 6200 1.149101 TCTTTGTGGCCCTCCTCTTT 58.851 50.000 0.00 0.00 0.00 2.52
2841 6201 1.202927 TCTTTGTGGCCCTCCTCTTTG 60.203 52.381 0.00 0.00 0.00 2.77
2845 6205 1.428912 TGTGGCCCTCCTCTTTGAAAT 59.571 47.619 0.00 0.00 0.00 2.17
2854 6214 4.335416 CTCCTCTTTGAAATAGTTGCCCA 58.665 43.478 0.00 0.00 0.00 5.36
2878 6238 5.474876 AGGAAAGAATGTAACAAGGCAAGAG 59.525 40.000 0.00 0.00 0.00 2.85
3036 6396 2.223947 TGGTTGACCGGACATATGATCG 60.224 50.000 9.46 11.95 39.43 3.69
3051 6411 3.410631 TGATCGGGTGTATGTGTTTGT 57.589 42.857 0.00 0.00 0.00 2.83
3073 6433 3.126858 TCGTTATCACATGGAAAAGCTGC 59.873 43.478 0.00 0.00 0.00 5.25
3089 6449 1.242076 CTGCACCAGAAAGGGAACTG 58.758 55.000 0.00 0.00 43.89 3.16
3102 6468 5.712152 AAGGGAACTGCAAATTGAGTAAG 57.288 39.130 0.00 0.00 42.68 2.34
3261 6633 4.473199 CTCAGATGTTGTGCTGATTGTTG 58.527 43.478 0.00 0.00 40.11 3.33
3269 6641 5.301551 TGTTGTGCTGATTGTTGGTTCTATT 59.698 36.000 0.00 0.00 0.00 1.73
3370 6751 9.632638 AGTGTATATTGATTATGCCTTCAAGTT 57.367 29.630 0.00 0.00 35.47 2.66
3377 6758 8.984891 TTGATTATGCCTTCAAGTTAATGTTG 57.015 30.769 0.00 0.00 0.00 3.33
3378 6759 8.121305 TGATTATGCCTTCAAGTTAATGTTGT 57.879 30.769 1.68 0.00 0.00 3.32
3379 6760 9.237187 TGATTATGCCTTCAAGTTAATGTTGTA 57.763 29.630 1.68 0.00 0.00 2.41
3380 6761 9.722056 GATTATGCCTTCAAGTTAATGTTGTAG 57.278 33.333 1.68 1.92 0.00 2.74
3381 6762 8.856153 TTATGCCTTCAAGTTAATGTTGTAGA 57.144 30.769 8.05 0.00 0.00 2.59
3382 6763 7.759489 ATGCCTTCAAGTTAATGTTGTAGAA 57.241 32.000 8.05 0.00 0.00 2.10
3383 6764 7.202016 TGCCTTCAAGTTAATGTTGTAGAAG 57.798 36.000 8.05 0.00 0.00 2.85
3384 6765 6.770785 TGCCTTCAAGTTAATGTTGTAGAAGT 59.229 34.615 8.05 0.00 31.73 3.01
3385 6766 7.078228 GCCTTCAAGTTAATGTTGTAGAAGTG 58.922 38.462 8.05 0.00 31.73 3.16
3386 6767 7.078228 CCTTCAAGTTAATGTTGTAGAAGTGC 58.922 38.462 8.05 0.00 31.73 4.40
3387 6768 7.255104 CCTTCAAGTTAATGTTGTAGAAGTGCA 60.255 37.037 8.05 0.00 31.73 4.57
3388 6769 7.744087 TCAAGTTAATGTTGTAGAAGTGCAT 57.256 32.000 0.00 0.00 0.00 3.96
3389 6770 8.165239 TCAAGTTAATGTTGTAGAAGTGCATT 57.835 30.769 0.00 0.00 34.62 3.56
3390 6771 8.289618 TCAAGTTAATGTTGTAGAAGTGCATTC 58.710 33.333 0.00 0.00 38.28 2.67
3392 6773 8.034058 AGTTAATGTTGTAGAAGTGCATTCTC 57.966 34.615 12.69 0.57 45.50 2.87
3393 6774 7.880195 AGTTAATGTTGTAGAAGTGCATTCTCT 59.120 33.333 12.69 7.34 45.50 3.10
3394 6775 9.151471 GTTAATGTTGTAGAAGTGCATTCTCTA 57.849 33.333 12.69 6.50 45.50 2.43
3395 6776 7.840342 AATGTTGTAGAAGTGCATTCTCTAG 57.160 36.000 12.69 0.00 45.50 2.43
3396 6777 5.171476 TGTTGTAGAAGTGCATTCTCTAGC 58.829 41.667 12.69 7.77 45.50 3.42
3397 6778 4.392921 TGTAGAAGTGCATTCTCTAGCC 57.607 45.455 12.69 1.08 45.50 3.93
3398 6779 3.769300 TGTAGAAGTGCATTCTCTAGCCA 59.231 43.478 12.69 3.12 45.50 4.75
3399 6780 3.988976 AGAAGTGCATTCTCTAGCCAA 57.011 42.857 0.00 0.00 45.50 4.52
3400 6781 4.500499 AGAAGTGCATTCTCTAGCCAAT 57.500 40.909 0.00 0.00 45.50 3.16
3401 6782 4.197750 AGAAGTGCATTCTCTAGCCAATG 58.802 43.478 8.43 8.43 45.50 2.82
3402 6783 5.459365 AGAAGTGCATTCTCTAGCCAATGC 61.459 45.833 22.34 22.34 45.50 3.56
3406 6787 3.329743 CATTCTCTAGCCAATGCAACG 57.670 47.619 0.00 0.00 41.13 4.10
3407 6788 2.760634 TTCTCTAGCCAATGCAACGA 57.239 45.000 0.00 0.00 41.13 3.85
3408 6789 2.760634 TCTCTAGCCAATGCAACGAA 57.239 45.000 0.00 0.00 41.13 3.85
3409 6790 3.052455 TCTCTAGCCAATGCAACGAAA 57.948 42.857 0.00 0.00 41.13 3.46
3410 6791 3.407698 TCTCTAGCCAATGCAACGAAAA 58.592 40.909 0.00 0.00 41.13 2.29
3411 6792 3.436704 TCTCTAGCCAATGCAACGAAAAG 59.563 43.478 0.00 0.00 41.13 2.27
3412 6793 3.407698 TCTAGCCAATGCAACGAAAAGA 58.592 40.909 0.00 0.00 41.13 2.52
3413 6794 2.422276 AGCCAATGCAACGAAAAGAC 57.578 45.000 0.00 0.00 41.13 3.01
3414 6795 1.000274 AGCCAATGCAACGAAAAGACC 60.000 47.619 0.00 0.00 41.13 3.85
3415 6796 1.685302 CCAATGCAACGAAAAGACCG 58.315 50.000 0.00 0.00 0.00 4.79
3416 6797 1.265635 CCAATGCAACGAAAAGACCGA 59.734 47.619 0.00 0.00 0.00 4.69
3417 6798 2.095263 CCAATGCAACGAAAAGACCGAT 60.095 45.455 0.00 0.00 0.00 4.18
3418 6799 3.163594 CAATGCAACGAAAAGACCGATC 58.836 45.455 0.00 0.00 0.00 3.69
3419 6800 2.163818 TGCAACGAAAAGACCGATCT 57.836 45.000 0.00 0.00 36.42 2.75
3420 6801 1.798223 TGCAACGAAAAGACCGATCTG 59.202 47.619 0.00 0.00 34.48 2.90
3421 6802 2.066262 GCAACGAAAAGACCGATCTGA 58.934 47.619 0.00 0.00 34.48 3.27
3422 6803 2.673368 GCAACGAAAAGACCGATCTGAT 59.327 45.455 0.00 0.00 34.48 2.90
3423 6804 3.484229 GCAACGAAAAGACCGATCTGATG 60.484 47.826 0.00 0.00 34.48 3.07
3424 6805 2.893637 ACGAAAAGACCGATCTGATGG 58.106 47.619 0.00 0.00 34.48 3.51
3425 6806 2.496070 ACGAAAAGACCGATCTGATGGA 59.504 45.455 11.46 0.00 34.48 3.41
3426 6807 3.056107 ACGAAAAGACCGATCTGATGGAA 60.056 43.478 11.46 0.00 34.48 3.53
3427 6808 3.553511 CGAAAAGACCGATCTGATGGAAG 59.446 47.826 11.46 0.00 34.48 3.46
3428 6809 4.678044 CGAAAAGACCGATCTGATGGAAGA 60.678 45.833 11.46 0.00 34.48 2.87
3429 6810 4.399004 AAAGACCGATCTGATGGAAGAG 57.601 45.455 11.46 0.00 34.48 2.85
3430 6811 3.304911 AGACCGATCTGATGGAAGAGA 57.695 47.619 11.46 0.00 32.29 3.10
3431 6812 2.955660 AGACCGATCTGATGGAAGAGAC 59.044 50.000 11.46 0.00 32.29 3.36
3432 6813 2.955660 GACCGATCTGATGGAAGAGACT 59.044 50.000 11.46 0.00 0.00 3.24
3433 6814 4.138290 GACCGATCTGATGGAAGAGACTA 58.862 47.826 11.46 0.00 0.00 2.59
3434 6815 4.141287 ACCGATCTGATGGAAGAGACTAG 58.859 47.826 11.46 0.00 0.00 2.57
3435 6816 3.505680 CCGATCTGATGGAAGAGACTAGG 59.494 52.174 0.83 0.00 0.00 3.02
3436 6817 3.057596 CGATCTGATGGAAGAGACTAGGC 60.058 52.174 0.00 0.00 0.00 3.93
3437 6818 3.388552 TCTGATGGAAGAGACTAGGCA 57.611 47.619 0.00 0.00 0.00 4.75
3438 6819 3.295093 TCTGATGGAAGAGACTAGGCAG 58.705 50.000 0.00 0.00 0.00 4.85
3439 6820 1.759445 TGATGGAAGAGACTAGGCAGC 59.241 52.381 0.00 0.00 0.00 5.25
3440 6821 1.759445 GATGGAAGAGACTAGGCAGCA 59.241 52.381 0.00 0.00 0.00 4.41
3441 6822 0.898320 TGGAAGAGACTAGGCAGCAC 59.102 55.000 0.00 0.00 0.00 4.40
3442 6823 0.898320 GGAAGAGACTAGGCAGCACA 59.102 55.000 0.00 0.00 0.00 4.57
3443 6824 1.484240 GGAAGAGACTAGGCAGCACAT 59.516 52.381 0.00 0.00 0.00 3.21
3444 6825 2.093235 GGAAGAGACTAGGCAGCACATT 60.093 50.000 0.00 0.00 0.00 2.71
3445 6826 3.133003 GGAAGAGACTAGGCAGCACATTA 59.867 47.826 0.00 0.00 0.00 1.90
3446 6827 4.202305 GGAAGAGACTAGGCAGCACATTAT 60.202 45.833 0.00 0.00 0.00 1.28
3447 6828 5.011125 GGAAGAGACTAGGCAGCACATTATA 59.989 44.000 0.00 0.00 0.00 0.98
3448 6829 5.461032 AGAGACTAGGCAGCACATTATAC 57.539 43.478 0.00 0.00 0.00 1.47
3449 6830 4.022762 AGAGACTAGGCAGCACATTATACG 60.023 45.833 0.00 0.00 0.00 3.06
3450 6831 3.637229 AGACTAGGCAGCACATTATACGT 59.363 43.478 0.00 0.00 0.00 3.57
3451 6832 3.978687 ACTAGGCAGCACATTATACGTC 58.021 45.455 0.00 0.00 0.00 4.34
3452 6833 2.979814 AGGCAGCACATTATACGTCA 57.020 45.000 0.00 0.00 0.00 4.35
3453 6834 3.260475 AGGCAGCACATTATACGTCAA 57.740 42.857 0.00 0.00 0.00 3.18
3454 6835 2.936498 AGGCAGCACATTATACGTCAAC 59.064 45.455 0.00 0.00 0.00 3.18
3455 6836 2.675844 GGCAGCACATTATACGTCAACA 59.324 45.455 0.00 0.00 0.00 3.33
3456 6837 3.485216 GGCAGCACATTATACGTCAACAC 60.485 47.826 0.00 0.00 0.00 3.32
3457 6838 3.485216 GCAGCACATTATACGTCAACACC 60.485 47.826 0.00 0.00 0.00 4.16
3458 6839 3.063452 CAGCACATTATACGTCAACACCC 59.937 47.826 0.00 0.00 0.00 4.61
3459 6840 2.353579 GCACATTATACGTCAACACCCC 59.646 50.000 0.00 0.00 0.00 4.95
3460 6841 2.940410 CACATTATACGTCAACACCCCC 59.060 50.000 0.00 0.00 0.00 5.40
3480 6861 4.394712 CCCCCTCACGTGTGGCTC 62.395 72.222 27.37 0.00 0.00 4.70
3481 6862 4.394712 CCCCTCACGTGTGGCTCC 62.395 72.222 27.37 0.00 0.00 4.70
3482 6863 4.394712 CCCTCACGTGTGGCTCCC 62.395 72.222 27.37 0.00 0.00 4.30
3483 6864 3.314331 CCTCACGTGTGGCTCCCT 61.314 66.667 22.53 0.00 0.00 4.20
3484 6865 2.262915 CTCACGTGTGGCTCCCTC 59.737 66.667 16.51 0.00 0.00 4.30
3485 6866 2.523168 TCACGTGTGGCTCCCTCA 60.523 61.111 16.51 0.00 0.00 3.86
3486 6867 2.047844 CACGTGTGGCTCCCTCAG 60.048 66.667 7.58 0.00 0.00 3.35
3487 6868 3.314331 ACGTGTGGCTCCCTCAGG 61.314 66.667 0.00 4.93 38.38 3.86
3493 6874 3.741325 GGCTCCCTCAGGCCTAAA 58.259 61.111 3.98 0.00 44.48 1.85
3494 6875 1.224870 GGCTCCCTCAGGCCTAAAC 59.775 63.158 3.98 0.00 44.48 2.01
3495 6876 1.562672 GGCTCCCTCAGGCCTAAACA 61.563 60.000 3.98 0.00 44.48 2.83
3496 6877 0.548510 GCTCCCTCAGGCCTAAACAT 59.451 55.000 3.98 0.00 0.00 2.71
3497 6878 1.748591 GCTCCCTCAGGCCTAAACATG 60.749 57.143 3.98 0.00 0.00 3.21
3498 6879 0.918983 TCCCTCAGGCCTAAACATGG 59.081 55.000 3.98 0.19 0.00 3.66
3499 6880 0.918983 CCCTCAGGCCTAAACATGGA 59.081 55.000 3.98 0.00 0.00 3.41
3500 6881 1.408822 CCCTCAGGCCTAAACATGGAC 60.409 57.143 3.98 0.00 0.00 4.02
3501 6882 1.408822 CCTCAGGCCTAAACATGGACC 60.409 57.143 3.98 0.00 31.51 4.46
3502 6883 0.251916 TCAGGCCTAAACATGGACCG 59.748 55.000 3.98 0.00 31.51 4.79
3503 6884 0.251916 CAGGCCTAAACATGGACCGA 59.748 55.000 3.98 0.00 31.51 4.69
3504 6885 0.988832 AGGCCTAAACATGGACCGAA 59.011 50.000 1.29 0.00 31.51 4.30
3505 6886 1.353022 AGGCCTAAACATGGACCGAAA 59.647 47.619 1.29 0.00 31.51 3.46
3506 6887 1.743394 GGCCTAAACATGGACCGAAAG 59.257 52.381 0.00 0.00 0.00 2.62
3507 6888 2.433436 GCCTAAACATGGACCGAAAGT 58.567 47.619 0.00 0.00 0.00 2.66
3508 6889 2.161609 GCCTAAACATGGACCGAAAGTG 59.838 50.000 0.00 0.00 0.00 3.16
3509 6890 2.747446 CCTAAACATGGACCGAAAGTGG 59.253 50.000 0.00 0.00 0.00 4.00
3510 6891 1.616159 AAACATGGACCGAAAGTGGG 58.384 50.000 0.00 0.00 0.00 4.61
3511 6892 0.476771 AACATGGACCGAAAGTGGGT 59.523 50.000 0.00 0.00 41.48 4.51
3512 6893 0.476771 ACATGGACCGAAAGTGGGTT 59.523 50.000 0.00 0.00 38.07 4.11
3513 6894 0.881118 CATGGACCGAAAGTGGGTTG 59.119 55.000 0.00 0.00 38.07 3.77
3514 6895 0.893727 ATGGACCGAAAGTGGGTTGC 60.894 55.000 0.00 0.00 38.07 4.17
3515 6896 1.527380 GGACCGAAAGTGGGTTGCA 60.527 57.895 0.00 0.00 38.07 4.08
3516 6897 1.104577 GGACCGAAAGTGGGTTGCAA 61.105 55.000 0.00 0.00 38.07 4.08
3517 6898 0.958822 GACCGAAAGTGGGTTGCAAT 59.041 50.000 0.59 0.00 38.07 3.56
3518 6899 1.339929 GACCGAAAGTGGGTTGCAATT 59.660 47.619 0.59 0.00 38.07 2.32
3519 6900 1.760029 ACCGAAAGTGGGTTGCAATTT 59.240 42.857 0.59 0.00 32.70 1.82
3520 6901 2.959707 ACCGAAAGTGGGTTGCAATTTA 59.040 40.909 0.59 0.00 32.70 1.40
3521 6902 3.385111 ACCGAAAGTGGGTTGCAATTTAA 59.615 39.130 0.59 0.00 32.70 1.52
3522 6903 4.039852 ACCGAAAGTGGGTTGCAATTTAAT 59.960 37.500 0.59 0.00 32.70 1.40
3523 6904 4.994217 CCGAAAGTGGGTTGCAATTTAATT 59.006 37.500 0.59 0.00 0.00 1.40
3524 6905 5.107143 CCGAAAGTGGGTTGCAATTTAATTG 60.107 40.000 12.84 12.84 43.06 2.32
3535 6916 3.425404 CAATTTAATTGCGTCAGTCGGG 58.575 45.455 4.66 0.00 40.26 5.14
3536 6917 2.172851 TTTAATTGCGTCAGTCGGGT 57.827 45.000 0.00 0.00 40.26 5.28
3537 6918 1.717194 TTAATTGCGTCAGTCGGGTC 58.283 50.000 0.00 0.00 40.26 4.46
3538 6919 0.892755 TAATTGCGTCAGTCGGGTCT 59.107 50.000 0.00 0.00 40.26 3.85
3539 6920 0.034896 AATTGCGTCAGTCGGGTCTT 59.965 50.000 0.00 0.00 40.26 3.01
3540 6921 0.670546 ATTGCGTCAGTCGGGTCTTG 60.671 55.000 0.00 0.00 40.26 3.02
3541 6922 1.740332 TTGCGTCAGTCGGGTCTTGA 61.740 55.000 0.00 0.00 40.26 3.02
3542 6923 1.006571 GCGTCAGTCGGGTCTTGAA 60.007 57.895 0.00 0.00 40.26 2.69
3543 6924 1.282930 GCGTCAGTCGGGTCTTGAAC 61.283 60.000 0.00 0.00 40.26 3.18
3544 6925 0.314302 CGTCAGTCGGGTCTTGAACT 59.686 55.000 0.00 0.00 35.71 3.01
3545 6926 1.666311 CGTCAGTCGGGTCTTGAACTC 60.666 57.143 0.00 0.00 35.71 3.01
3555 6936 3.926821 GTCTTGAACTCGAGACCTCTT 57.073 47.619 21.68 1.43 46.74 2.85
3556 6937 3.570559 GTCTTGAACTCGAGACCTCTTG 58.429 50.000 21.68 9.21 46.74 3.02
3557 6938 2.558795 TCTTGAACTCGAGACCTCTTGG 59.441 50.000 21.68 7.09 39.83 3.61
3558 6939 0.603569 TGAACTCGAGACCTCTTGGC 59.396 55.000 21.68 0.00 36.63 4.52
3559 6940 0.892063 GAACTCGAGACCTCTTGGCT 59.108 55.000 21.68 0.00 36.63 4.75
3560 6941 0.892063 AACTCGAGACCTCTTGGCTC 59.108 55.000 21.68 0.00 36.63 4.70
3561 6942 0.968393 ACTCGAGACCTCTTGGCTCC 60.968 60.000 21.68 0.00 34.92 4.70
3562 6943 1.999071 CTCGAGACCTCTTGGCTCCG 61.999 65.000 6.58 0.00 34.92 4.63
3563 6944 2.046864 CGAGACCTCTTGGCTCCGA 61.047 63.158 0.00 0.00 34.92 4.55
3564 6945 1.388065 CGAGACCTCTTGGCTCCGAT 61.388 60.000 0.00 0.00 34.92 4.18
3565 6946 1.693627 GAGACCTCTTGGCTCCGATA 58.306 55.000 0.00 0.00 36.63 2.92
3566 6947 1.338655 GAGACCTCTTGGCTCCGATAC 59.661 57.143 0.00 0.00 36.63 2.24
3567 6948 0.389757 GACCTCTTGGCTCCGATACC 59.610 60.000 0.00 0.00 36.63 2.73
3568 6949 0.325296 ACCTCTTGGCTCCGATACCA 60.325 55.000 0.00 0.00 36.63 3.25
3569 6950 1.051812 CCTCTTGGCTCCGATACCAT 58.948 55.000 0.00 0.00 35.42 3.55
3570 6951 1.270518 CCTCTTGGCTCCGATACCATG 60.271 57.143 0.00 0.00 35.42 3.66
3571 6952 1.414181 CTCTTGGCTCCGATACCATGT 59.586 52.381 0.00 0.00 35.42 3.21
3572 6953 2.628178 CTCTTGGCTCCGATACCATGTA 59.372 50.000 0.00 0.00 35.42 2.29
3573 6954 2.628178 TCTTGGCTCCGATACCATGTAG 59.372 50.000 0.00 0.00 35.42 2.74
3574 6955 2.375014 TGGCTCCGATACCATGTAGA 57.625 50.000 0.00 0.00 0.00 2.59
3575 6956 2.673258 TGGCTCCGATACCATGTAGAA 58.327 47.619 0.00 0.00 0.00 2.10
3576 6957 2.628178 TGGCTCCGATACCATGTAGAAG 59.372 50.000 0.00 0.00 0.00 2.85
3577 6958 2.628657 GGCTCCGATACCATGTAGAAGT 59.371 50.000 0.00 0.00 0.00 3.01
3578 6959 3.553096 GGCTCCGATACCATGTAGAAGTG 60.553 52.174 0.00 0.00 0.00 3.16
3579 6960 3.643763 CTCCGATACCATGTAGAAGTGC 58.356 50.000 0.00 0.00 0.00 4.40
3580 6961 3.028130 TCCGATACCATGTAGAAGTGCA 58.972 45.455 0.00 0.00 0.00 4.57
3583 6964 5.480422 TCCGATACCATGTAGAAGTGCATAT 59.520 40.000 0.00 0.00 0.00 1.78
3590 6971 8.752005 ACCATGTAGAAGTGCATATTGTAAAT 57.248 30.769 0.00 0.00 0.00 1.40
3623 7129 9.845740 TCCTAATTGTTGTATATGCTTGTATGT 57.154 29.630 0.00 0.00 0.00 2.29
3701 7208 4.944962 TGTTCCATAGCTTCATCGTTTG 57.055 40.909 0.00 0.00 0.00 2.93
3702 7209 3.689161 TGTTCCATAGCTTCATCGTTTGG 59.311 43.478 0.00 0.00 0.00 3.28
3703 7210 3.904800 TCCATAGCTTCATCGTTTGGA 57.095 42.857 0.00 0.00 0.00 3.53
3704 7211 3.797039 TCCATAGCTTCATCGTTTGGAG 58.203 45.455 0.00 0.00 33.58 3.86
3705 7212 3.197766 TCCATAGCTTCATCGTTTGGAGT 59.802 43.478 0.00 0.00 32.93 3.85
3706 7213 3.941483 CCATAGCTTCATCGTTTGGAGTT 59.059 43.478 0.00 0.00 32.93 3.01
3707 7214 4.396166 CCATAGCTTCATCGTTTGGAGTTT 59.604 41.667 0.00 0.00 32.93 2.66
3748 7255 5.763204 TGTATGGGACTCTGTTTTTCTGTTC 59.237 40.000 0.00 0.00 0.00 3.18
3766 7273 6.642430 TCTGTTCTCTAGTAGAGTACTGGAC 58.358 44.000 27.93 18.12 41.44 4.02
3768 7275 4.057406 TCTCTAGTAGAGTACTGGACGC 57.943 50.000 23.51 0.00 42.83 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.303876 TGATGTAATTTTCTTGTAAGGAAAGCC 58.696 33.333 4.56 0.00 36.96 4.35
149 151 2.803956 CAAGATTGCTTTTGGGCTTGTG 59.196 45.455 0.00 0.00 30.14 3.33
233 236 1.792367 TGTTGCGAGACAGATTTGACG 59.208 47.619 0.00 0.00 0.00 4.35
257 261 1.210672 GGTAGCGCGAGGAGATAGC 59.789 63.158 12.10 0.00 0.00 2.97
321 325 0.107508 GCAATCAGAGTGCAGCCCTA 60.108 55.000 17.92 0.00 41.80 3.53
432 436 6.415206 CCATTAAGATGGCCTCAAATTGAT 57.585 37.500 3.32 0.00 45.96 2.57
529 533 9.261180 GATGAATATGAAGATGGTCTAAAACGA 57.739 33.333 0.00 0.00 0.00 3.85
766 773 3.128242 GCCCATGAAATGTCTCTTGAGTG 59.872 47.826 0.00 0.00 44.81 3.51
788 795 1.449601 AAGTTAGGGATGCGTGCCG 60.450 57.895 11.21 0.00 41.45 5.69
789 796 1.993369 GCAAGTTAGGGATGCGTGCC 61.993 60.000 8.73 8.73 35.78 5.01
813 820 3.439129 GGTTTACCGAACTCATTCCAAGG 59.561 47.826 0.00 0.00 38.35 3.61
824 831 5.640783 ACTATTGTGCTTAGGTTTACCGAAC 59.359 40.000 0.00 0.00 42.08 3.95
837 844 2.162681 GGCCAGTCAACTATTGTGCTT 58.837 47.619 0.00 0.00 0.00 3.91
852 859 8.299570 GGAATCATATTAACAACATAAGGCCAG 58.700 37.037 5.01 0.00 0.00 4.85
870 877 2.443255 GGCCCTCAAGGAAGGAATCATA 59.557 50.000 0.00 0.00 38.87 2.15
927 934 6.601332 AGGGTTAATATGTGGTAGTGATTGG 58.399 40.000 0.00 0.00 0.00 3.16
930 937 6.847567 TGGTAGGGTTAATATGTGGTAGTGAT 59.152 38.462 0.00 0.00 0.00 3.06
936 943 6.397217 AGTTTGGTAGGGTTAATATGTGGT 57.603 37.500 0.00 0.00 0.00 4.16
950 957 2.231478 TCAAGCCTCTCGAGTTTGGTAG 59.769 50.000 13.13 0.60 0.00 3.18
1029 1036 1.751563 GTAGAGATGCTGGAGGCCC 59.248 63.158 0.00 0.00 40.92 5.80
1174 1187 3.371380 GCAGAAAGGTCCAGGATTCTCAT 60.371 47.826 1.26 0.00 30.01 2.90
1309 1322 1.800805 CTCAAGTGTGCTGTCCGATT 58.199 50.000 0.00 0.00 0.00 3.34
1328 1341 1.336887 TGTCAAGAACGACTAGGCTGC 60.337 52.381 0.00 0.00 36.82 5.25
1333 1346 4.439426 CCCAGAGATGTCAAGAACGACTAG 60.439 50.000 0.00 0.00 36.82 2.57
1395 1408 4.081420 TCAAGGCTGCTTAAACTAGAGAGG 60.081 45.833 0.00 0.00 0.00 3.69
1479 1492 1.696336 CCTCCGAGATCCATCATGGTT 59.304 52.381 2.79 0.00 39.03 3.67
1548 1633 7.452189 CCACTTAAACCCAAATCCTTTAACCTA 59.548 37.037 0.00 0.00 0.00 3.08
1581 1666 4.468510 TCGGTACCAACTGTAATCCTCAAT 59.531 41.667 13.54 0.00 33.38 2.57
1600 1685 1.342672 AAGGGCGGTATCCAATCGGT 61.343 55.000 0.00 0.00 0.00 4.69
1627 1756 3.152341 CTCTTGGAACTGAAACCATGCT 58.848 45.455 0.00 0.00 36.02 3.79
1634 1763 4.065088 CGAATGTCCTCTTGGAACTGAAA 58.935 43.478 0.00 0.00 45.18 2.69
1647 1776 1.135094 ATCCATCCAGCGAATGTCCT 58.865 50.000 0.00 0.00 0.00 3.85
1692 1822 3.392616 AGTGATGAACCAGTCAGGAAGTT 59.607 43.478 0.00 0.00 40.43 2.66
1693 1823 2.975489 AGTGATGAACCAGTCAGGAAGT 59.025 45.455 0.00 0.00 40.43 3.01
1710 1840 2.295909 GTGGCCTTTGCAAATGTAGTGA 59.704 45.455 13.23 0.00 40.13 3.41
1768 1898 4.885413 TGAATTCCATGTTTCTTGGCAAG 58.115 39.130 21.17 21.17 34.06 4.01
1856 1986 3.728845 ACATGTCCAGCACGGTAATATC 58.271 45.455 0.00 0.00 35.57 1.63
1865 1995 2.880890 AGTTTTCAGACATGTCCAGCAC 59.119 45.455 22.21 12.45 0.00 4.40
1867 1997 3.406764 AGAGTTTTCAGACATGTCCAGC 58.593 45.455 22.21 6.47 0.00 4.85
1976 2106 3.868077 CCTTCCGCTTTACAGAGAGATTG 59.132 47.826 0.00 0.00 0.00 2.67
1998 2128 4.217550 TGTTTAAGTCCAAGGCATACAAGC 59.782 41.667 0.00 0.00 0.00 4.01
2019 2149 5.422012 AGTTGTCCCTCAAAAAGATTGTTGT 59.578 36.000 0.00 0.00 37.81 3.32
2050 2180 7.703058 AATAATGTTCTTCACCCCTAAACAG 57.297 36.000 0.00 0.00 33.74 3.16
2056 2186 5.536497 AGGAAATAATGTTCTTCACCCCT 57.464 39.130 0.00 0.00 0.00 4.79
2201 5552 7.560368 AGAAATCGTAATTCAACCAGATCTCT 58.440 34.615 0.00 0.00 0.00 3.10
2207 5558 6.530534 AGACGTAGAAATCGTAATTCAACCAG 59.469 38.462 0.00 0.00 41.64 4.00
2261 5612 0.620556 AGATTTGAGATGGTGGCGGT 59.379 50.000 0.00 0.00 0.00 5.68
2263 5614 3.535561 ACTAAGATTTGAGATGGTGGCG 58.464 45.455 0.00 0.00 0.00 5.69
2418 5775 9.273016 AGGAAAAATTATATGTACGGATCACAG 57.727 33.333 0.00 0.00 0.00 3.66
2420 5777 9.490379 AGAGGAAAAATTATATGTACGGATCAC 57.510 33.333 0.00 0.00 0.00 3.06
2423 5780 9.273016 CACAGAGGAAAAATTATATGTACGGAT 57.727 33.333 0.00 0.00 0.00 4.18
2465 5822 6.455360 AATGCCAATACCATAGTCAAGTTG 57.545 37.500 0.00 0.00 0.00 3.16
2473 5830 6.225318 CAAATCCCAAATGCCAATACCATAG 58.775 40.000 0.00 0.00 0.00 2.23
2720 6077 8.321353 TGTTAGATTGTTATCAGACAAGTCCAT 58.679 33.333 0.00 0.00 42.28 3.41
2756 6113 0.969149 TCAAGCTGACGACCTGATGT 59.031 50.000 0.00 0.00 0.00 3.06
2797 6154 4.454678 CACTGTTGCCACTATACATGGAT 58.545 43.478 0.00 0.00 39.87 3.41
2806 6163 2.092646 ACAAAGACCACTGTTGCCACTA 60.093 45.455 0.00 0.00 0.00 2.74
2840 6200 4.380843 TCTTTCCTGGGCAACTATTTCA 57.619 40.909 0.00 0.00 0.00 2.69
2841 6201 5.185828 ACATTCTTTCCTGGGCAACTATTTC 59.814 40.000 0.00 0.00 0.00 2.17
2845 6205 3.806949 ACATTCTTTCCTGGGCAACTA 57.193 42.857 0.00 0.00 0.00 2.24
2854 6214 5.385198 TCTTGCCTTGTTACATTCTTTCCT 58.615 37.500 0.00 0.00 0.00 3.36
2908 6268 6.358974 AGTCCAAAATAAAAGGTCATTGGG 57.641 37.500 0.00 0.00 38.25 4.12
3036 6396 4.691685 TGATAACGACAAACACATACACCC 59.308 41.667 0.00 0.00 0.00 4.61
3051 6411 3.126858 GCAGCTTTTCCATGTGATAACGA 59.873 43.478 0.00 0.00 0.00 3.85
3073 6433 1.691196 TTGCAGTTCCCTTTCTGGTG 58.309 50.000 0.00 0.00 32.94 4.17
3089 6449 5.641209 TCAGAGCTCTTCTTACTCAATTTGC 59.359 40.000 15.27 0.00 32.41 3.68
3102 6468 3.859443 TCATGCTTCTTCAGAGCTCTTC 58.141 45.455 15.27 0.00 0.00 2.87
3231 6602 2.005451 CACAACATCTGAGCAGTAGCC 58.995 52.381 0.00 0.00 43.56 3.93
3261 6633 6.599638 ACTCTAAACCATGAAGCAATAGAACC 59.400 38.462 0.00 0.00 0.00 3.62
3269 6641 5.129634 TGTGAAACTCTAAACCATGAAGCA 58.870 37.500 0.00 0.00 38.04 3.91
3360 6741 7.078228 CACTTCTACAACATTAACTTGAAGGC 58.922 38.462 0.00 0.00 35.40 4.35
3370 6751 7.492669 GCTAGAGAATGCACTTCTACAACATTA 59.507 37.037 10.22 0.00 44.42 1.90
3371 6752 6.314896 GCTAGAGAATGCACTTCTACAACATT 59.685 38.462 10.22 0.00 44.42 2.71
3372 6753 5.814705 GCTAGAGAATGCACTTCTACAACAT 59.185 40.000 10.22 0.00 44.42 2.71
3373 6754 5.171476 GCTAGAGAATGCACTTCTACAACA 58.829 41.667 10.22 0.00 44.42 3.33
3374 6755 4.568760 GGCTAGAGAATGCACTTCTACAAC 59.431 45.833 10.22 1.34 44.42 3.32
3375 6756 4.222810 TGGCTAGAGAATGCACTTCTACAA 59.777 41.667 10.22 1.59 44.42 2.41
3376 6757 3.769300 TGGCTAGAGAATGCACTTCTACA 59.231 43.478 10.22 2.38 44.42 2.74
3377 6758 4.392921 TGGCTAGAGAATGCACTTCTAC 57.607 45.455 10.22 6.08 44.42 2.59
3378 6759 5.363101 CATTGGCTAGAGAATGCACTTCTA 58.637 41.667 10.22 7.23 44.42 2.10
3380 6761 4.548991 CATTGGCTAGAGAATGCACTTC 57.451 45.455 0.00 0.00 0.00 3.01
3386 6767 2.938451 TCGTTGCATTGGCTAGAGAATG 59.062 45.455 0.00 1.78 41.91 2.67
3387 6768 3.266510 TCGTTGCATTGGCTAGAGAAT 57.733 42.857 0.00 0.00 41.91 2.40
3388 6769 2.760634 TCGTTGCATTGGCTAGAGAA 57.239 45.000 0.00 0.00 41.91 2.87
3389 6770 2.760634 TTCGTTGCATTGGCTAGAGA 57.239 45.000 0.00 0.00 41.91 3.10
3390 6771 3.436704 TCTTTTCGTTGCATTGGCTAGAG 59.563 43.478 0.00 0.00 41.91 2.43
3391 6772 3.188460 GTCTTTTCGTTGCATTGGCTAGA 59.812 43.478 0.00 0.00 41.91 2.43
3392 6773 3.492313 GTCTTTTCGTTGCATTGGCTAG 58.508 45.455 0.00 0.00 41.91 3.42
3393 6774 2.227865 GGTCTTTTCGTTGCATTGGCTA 59.772 45.455 0.00 0.00 41.91 3.93
3394 6775 1.000274 GGTCTTTTCGTTGCATTGGCT 60.000 47.619 0.00 0.00 41.91 4.75
3395 6776 1.418373 GGTCTTTTCGTTGCATTGGC 58.582 50.000 0.00 0.00 41.68 4.52
3396 6777 1.265635 TCGGTCTTTTCGTTGCATTGG 59.734 47.619 0.00 0.00 0.00 3.16
3397 6778 2.679355 TCGGTCTTTTCGTTGCATTG 57.321 45.000 0.00 0.00 0.00 2.82
3398 6779 3.074412 AGATCGGTCTTTTCGTTGCATT 58.926 40.909 0.00 0.00 0.00 3.56
3399 6780 2.416547 CAGATCGGTCTTTTCGTTGCAT 59.583 45.455 0.00 0.00 30.42 3.96
3400 6781 1.798223 CAGATCGGTCTTTTCGTTGCA 59.202 47.619 0.00 0.00 30.42 4.08
3401 6782 2.066262 TCAGATCGGTCTTTTCGTTGC 58.934 47.619 0.00 0.00 30.42 4.17
3402 6783 3.062639 CCATCAGATCGGTCTTTTCGTTG 59.937 47.826 0.00 0.00 30.42 4.10
3403 6784 3.056107 TCCATCAGATCGGTCTTTTCGTT 60.056 43.478 0.00 0.00 30.42 3.85
3404 6785 2.496070 TCCATCAGATCGGTCTTTTCGT 59.504 45.455 0.00 0.00 30.42 3.85
3405 6786 3.165058 TCCATCAGATCGGTCTTTTCG 57.835 47.619 0.00 0.00 30.42 3.46
3406 6787 4.759782 TCTTCCATCAGATCGGTCTTTTC 58.240 43.478 0.00 0.00 30.42 2.29
3407 6788 4.467795 TCTCTTCCATCAGATCGGTCTTTT 59.532 41.667 0.00 0.00 30.42 2.27
3408 6789 4.026744 TCTCTTCCATCAGATCGGTCTTT 58.973 43.478 0.00 0.00 30.42 2.52
3409 6790 3.383185 GTCTCTTCCATCAGATCGGTCTT 59.617 47.826 0.00 0.00 30.42 3.01
3410 6791 2.955660 GTCTCTTCCATCAGATCGGTCT 59.044 50.000 0.00 0.00 34.14 3.85
3411 6792 2.955660 AGTCTCTTCCATCAGATCGGTC 59.044 50.000 0.00 0.00 0.00 4.79
3412 6793 3.025322 AGTCTCTTCCATCAGATCGGT 57.975 47.619 0.00 0.00 0.00 4.69
3413 6794 3.505680 CCTAGTCTCTTCCATCAGATCGG 59.494 52.174 0.00 0.00 0.00 4.18
3414 6795 3.057596 GCCTAGTCTCTTCCATCAGATCG 60.058 52.174 0.00 0.00 0.00 3.69
3415 6796 3.894427 TGCCTAGTCTCTTCCATCAGATC 59.106 47.826 0.00 0.00 0.00 2.75
3416 6797 3.896888 CTGCCTAGTCTCTTCCATCAGAT 59.103 47.826 0.00 0.00 0.00 2.90
3417 6798 3.295093 CTGCCTAGTCTCTTCCATCAGA 58.705 50.000 0.00 0.00 0.00 3.27
3418 6799 2.224018 GCTGCCTAGTCTCTTCCATCAG 60.224 54.545 0.00 0.00 0.00 2.90
3419 6800 1.759445 GCTGCCTAGTCTCTTCCATCA 59.241 52.381 0.00 0.00 0.00 3.07
3420 6801 1.759445 TGCTGCCTAGTCTCTTCCATC 59.241 52.381 0.00 0.00 0.00 3.51
3421 6802 1.484240 GTGCTGCCTAGTCTCTTCCAT 59.516 52.381 0.00 0.00 0.00 3.41
3422 6803 0.898320 GTGCTGCCTAGTCTCTTCCA 59.102 55.000 0.00 0.00 0.00 3.53
3423 6804 0.898320 TGTGCTGCCTAGTCTCTTCC 59.102 55.000 0.00 0.00 0.00 3.46
3424 6805 2.977772 ATGTGCTGCCTAGTCTCTTC 57.022 50.000 0.00 0.00 0.00 2.87
3425 6806 5.508153 CGTATAATGTGCTGCCTAGTCTCTT 60.508 44.000 0.00 0.00 0.00 2.85
3426 6807 4.022762 CGTATAATGTGCTGCCTAGTCTCT 60.023 45.833 0.00 0.00 0.00 3.10
3427 6808 4.230657 CGTATAATGTGCTGCCTAGTCTC 58.769 47.826 0.00 0.00 0.00 3.36
3428 6809 3.637229 ACGTATAATGTGCTGCCTAGTCT 59.363 43.478 0.00 0.00 0.00 3.24
3429 6810 3.978687 ACGTATAATGTGCTGCCTAGTC 58.021 45.455 0.00 0.00 0.00 2.59
3430 6811 3.383505 TGACGTATAATGTGCTGCCTAGT 59.616 43.478 0.00 0.00 0.00 2.57
3431 6812 3.977427 TGACGTATAATGTGCTGCCTAG 58.023 45.455 0.00 0.00 0.00 3.02
3432 6813 4.116961 GTTGACGTATAATGTGCTGCCTA 58.883 43.478 0.00 0.00 0.00 3.93
3433 6814 2.936498 GTTGACGTATAATGTGCTGCCT 59.064 45.455 0.00 0.00 0.00 4.75
3434 6815 2.675844 TGTTGACGTATAATGTGCTGCC 59.324 45.455 0.00 0.00 0.00 4.85
3435 6816 3.485216 GGTGTTGACGTATAATGTGCTGC 60.485 47.826 0.00 0.00 0.00 5.25
3436 6817 3.063452 GGGTGTTGACGTATAATGTGCTG 59.937 47.826 0.00 0.00 0.00 4.41
3437 6818 3.267483 GGGTGTTGACGTATAATGTGCT 58.733 45.455 0.00 0.00 0.00 4.40
3438 6819 2.353579 GGGGTGTTGACGTATAATGTGC 59.646 50.000 0.00 0.00 0.00 4.57
3439 6820 2.940410 GGGGGTGTTGACGTATAATGTG 59.060 50.000 0.00 0.00 0.00 3.21
3440 6821 3.271055 GGGGGTGTTGACGTATAATGT 57.729 47.619 0.00 0.00 0.00 2.71
3463 6844 4.394712 GAGCCACACGTGAGGGGG 62.395 72.222 29.55 20.83 40.46 5.40
3464 6845 4.394712 GGAGCCACACGTGAGGGG 62.395 72.222 29.55 23.01 40.46 4.79
3465 6846 4.394712 GGGAGCCACACGTGAGGG 62.395 72.222 29.55 25.23 43.28 4.30
3466 6847 3.302347 GAGGGAGCCACACGTGAGG 62.302 68.421 25.64 25.64 0.00 3.86
3467 6848 2.262915 GAGGGAGCCACACGTGAG 59.737 66.667 25.01 15.20 0.00 3.51
3468 6849 2.523168 TGAGGGAGCCACACGTGA 60.523 61.111 25.01 0.00 0.00 4.35
3469 6850 2.047844 CTGAGGGAGCCACACGTG 60.048 66.667 15.48 15.48 0.00 4.49
3470 6851 3.314331 CCTGAGGGAGCCACACGT 61.314 66.667 0.00 0.00 33.58 4.49
3471 6852 4.767255 GCCTGAGGGAGCCACACG 62.767 72.222 0.00 0.00 33.58 4.49
3477 6858 0.548510 ATGTTTAGGCCTGAGGGAGC 59.451 55.000 17.99 0.00 33.58 4.70
3478 6859 1.133976 CCATGTTTAGGCCTGAGGGAG 60.134 57.143 17.99 0.88 33.58 4.30
3479 6860 0.918983 CCATGTTTAGGCCTGAGGGA 59.081 55.000 17.99 0.00 33.58 4.20
3480 6861 0.918983 TCCATGTTTAGGCCTGAGGG 59.081 55.000 17.99 7.90 0.00 4.30
3481 6862 1.408822 GGTCCATGTTTAGGCCTGAGG 60.409 57.143 17.99 4.66 0.00 3.86
3482 6863 1.743772 CGGTCCATGTTTAGGCCTGAG 60.744 57.143 17.99 0.00 0.00 3.35
3483 6864 0.251916 CGGTCCATGTTTAGGCCTGA 59.748 55.000 17.99 3.42 0.00 3.86
3484 6865 0.251916 TCGGTCCATGTTTAGGCCTG 59.748 55.000 17.99 0.00 0.00 4.85
3485 6866 0.988832 TTCGGTCCATGTTTAGGCCT 59.011 50.000 11.78 11.78 0.00 5.19
3486 6867 1.743394 CTTTCGGTCCATGTTTAGGCC 59.257 52.381 0.00 0.00 0.00 5.19
3487 6868 2.161609 CACTTTCGGTCCATGTTTAGGC 59.838 50.000 0.00 0.00 0.00 3.93
3488 6869 2.747446 CCACTTTCGGTCCATGTTTAGG 59.253 50.000 0.00 0.00 0.00 2.69
3489 6870 2.747446 CCCACTTTCGGTCCATGTTTAG 59.253 50.000 0.00 0.00 0.00 1.85
3490 6871 2.106857 ACCCACTTTCGGTCCATGTTTA 59.893 45.455 0.00 0.00 0.00 2.01
3491 6872 1.133606 ACCCACTTTCGGTCCATGTTT 60.134 47.619 0.00 0.00 0.00 2.83
3492 6873 0.476771 ACCCACTTTCGGTCCATGTT 59.523 50.000 0.00 0.00 0.00 2.71
3493 6874 0.476771 AACCCACTTTCGGTCCATGT 59.523 50.000 0.00 0.00 31.48 3.21
3494 6875 0.881118 CAACCCACTTTCGGTCCATG 59.119 55.000 0.00 0.00 31.48 3.66
3495 6876 0.893727 GCAACCCACTTTCGGTCCAT 60.894 55.000 0.00 0.00 31.48 3.41
3496 6877 1.527380 GCAACCCACTTTCGGTCCA 60.527 57.895 0.00 0.00 31.48 4.02
3497 6878 1.104577 TTGCAACCCACTTTCGGTCC 61.105 55.000 0.00 0.00 31.48 4.46
3498 6879 0.958822 ATTGCAACCCACTTTCGGTC 59.041 50.000 0.00 0.00 31.48 4.79
3499 6880 1.408969 AATTGCAACCCACTTTCGGT 58.591 45.000 0.00 0.00 34.07 4.69
3500 6881 2.524569 AAATTGCAACCCACTTTCGG 57.475 45.000 0.00 0.00 0.00 4.30
3501 6882 5.914746 CAATTAAATTGCAACCCACTTTCG 58.085 37.500 0.00 0.00 32.92 3.46
3514 6895 3.119990 ACCCGACTGACGCAATTAAATTG 60.120 43.478 0.00 0.00 43.06 2.32
3515 6896 3.078837 ACCCGACTGACGCAATTAAATT 58.921 40.909 0.00 0.00 41.07 1.82
3516 6897 2.676342 GACCCGACTGACGCAATTAAAT 59.324 45.455 0.00 0.00 41.07 1.40
3517 6898 2.070783 GACCCGACTGACGCAATTAAA 58.929 47.619 0.00 0.00 41.07 1.52
3518 6899 1.274167 AGACCCGACTGACGCAATTAA 59.726 47.619 0.00 0.00 41.07 1.40
3519 6900 0.892755 AGACCCGACTGACGCAATTA 59.107 50.000 0.00 0.00 41.07 1.40
3520 6901 0.034896 AAGACCCGACTGACGCAATT 59.965 50.000 0.00 0.00 41.07 2.32
3521 6902 0.670546 CAAGACCCGACTGACGCAAT 60.671 55.000 0.00 0.00 41.07 3.56
3522 6903 1.300620 CAAGACCCGACTGACGCAA 60.301 57.895 0.00 0.00 41.07 4.85
3523 6904 1.740332 TTCAAGACCCGACTGACGCA 61.740 55.000 0.00 0.00 41.07 5.24
3524 6905 1.006571 TTCAAGACCCGACTGACGC 60.007 57.895 0.00 0.00 41.07 5.19
3525 6906 0.314302 AGTTCAAGACCCGACTGACG 59.686 55.000 0.00 0.00 42.18 4.35
3526 6907 1.666311 CGAGTTCAAGACCCGACTGAC 60.666 57.143 0.00 0.00 30.04 3.51
3527 6908 0.596577 CGAGTTCAAGACCCGACTGA 59.403 55.000 0.00 0.00 30.04 3.41
3528 6909 0.596577 TCGAGTTCAAGACCCGACTG 59.403 55.000 0.00 0.00 33.29 3.51
3529 6910 0.882474 CTCGAGTTCAAGACCCGACT 59.118 55.000 3.62 0.00 33.29 4.18
3530 6911 0.879765 TCTCGAGTTCAAGACCCGAC 59.120 55.000 13.13 0.00 33.29 4.79
3531 6912 0.879765 GTCTCGAGTTCAAGACCCGA 59.120 55.000 13.13 0.00 36.06 5.14
3532 6913 3.403276 GTCTCGAGTTCAAGACCCG 57.597 57.895 13.13 0.00 36.69 5.28
3535 6916 3.570559 CAAGAGGTCTCGAGTTCAAGAC 58.429 50.000 13.13 1.74 40.96 3.01
3536 6917 2.558795 CCAAGAGGTCTCGAGTTCAAGA 59.441 50.000 13.13 0.00 34.09 3.02
3537 6918 2.928731 GCCAAGAGGTCTCGAGTTCAAG 60.929 54.545 13.13 5.88 37.19 3.02
3538 6919 1.000955 GCCAAGAGGTCTCGAGTTCAA 59.999 52.381 13.13 0.00 37.19 2.69
3539 6920 0.603569 GCCAAGAGGTCTCGAGTTCA 59.396 55.000 13.13 0.00 37.19 3.18
3540 6921 0.892063 AGCCAAGAGGTCTCGAGTTC 59.108 55.000 13.13 9.04 37.19 3.01
3541 6922 0.892063 GAGCCAAGAGGTCTCGAGTT 59.108 55.000 13.13 0.00 40.01 3.01
3542 6923 0.968393 GGAGCCAAGAGGTCTCGAGT 60.968 60.000 13.13 0.00 42.87 4.18
3543 6924 1.813192 GGAGCCAAGAGGTCTCGAG 59.187 63.158 5.93 5.93 42.87 4.04
3544 6925 2.046864 CGGAGCCAAGAGGTCTCGA 61.047 63.158 0.00 0.00 42.87 4.04
3545 6926 1.388065 ATCGGAGCCAAGAGGTCTCG 61.388 60.000 0.00 0.00 42.87 4.04
3546 6927 1.338655 GTATCGGAGCCAAGAGGTCTC 59.661 57.143 0.00 0.00 42.87 3.36
3547 6928 1.404843 GTATCGGAGCCAAGAGGTCT 58.595 55.000 0.00 0.00 42.87 3.85
3548 6929 0.389757 GGTATCGGAGCCAAGAGGTC 59.610 60.000 0.00 0.00 42.55 3.85
3549 6930 0.325296 TGGTATCGGAGCCAAGAGGT 60.325 55.000 2.13 0.00 37.19 3.85
3550 6931 1.051812 ATGGTATCGGAGCCAAGAGG 58.948 55.000 7.94 0.00 38.38 3.69
3551 6932 1.414181 ACATGGTATCGGAGCCAAGAG 59.586 52.381 11.73 6.85 38.38 2.85
3552 6933 1.496060 ACATGGTATCGGAGCCAAGA 58.504 50.000 11.73 0.00 38.38 3.02
3553 6934 2.628178 TCTACATGGTATCGGAGCCAAG 59.372 50.000 7.94 6.62 38.38 3.61
3554 6935 2.673258 TCTACATGGTATCGGAGCCAA 58.327 47.619 7.94 0.00 38.38 4.52
3555 6936 2.375014 TCTACATGGTATCGGAGCCA 57.625 50.000 6.55 6.55 39.33 4.75
3556 6937 2.628657 ACTTCTACATGGTATCGGAGCC 59.371 50.000 0.00 0.00 0.00 4.70
3557 6938 3.643763 CACTTCTACATGGTATCGGAGC 58.356 50.000 0.00 0.00 0.00 4.70
3558 6939 3.068165 TGCACTTCTACATGGTATCGGAG 59.932 47.826 0.00 0.00 0.00 4.63
3559 6940 3.028130 TGCACTTCTACATGGTATCGGA 58.972 45.455 0.00 0.00 0.00 4.55
3560 6941 3.452755 TGCACTTCTACATGGTATCGG 57.547 47.619 0.00 0.00 0.00 4.18
3561 6942 6.646653 ACAATATGCACTTCTACATGGTATCG 59.353 38.462 0.00 0.00 0.00 2.92
3562 6943 7.969536 ACAATATGCACTTCTACATGGTATC 57.030 36.000 0.00 0.00 0.00 2.24
3563 6944 9.845740 TTTACAATATGCACTTCTACATGGTAT 57.154 29.630 0.00 0.00 0.00 2.73
3564 6945 9.845740 ATTTACAATATGCACTTCTACATGGTA 57.154 29.630 0.00 0.00 0.00 3.25
3565 6946 8.623903 CATTTACAATATGCACTTCTACATGGT 58.376 33.333 0.00 0.00 0.00 3.55
3566 6947 8.839343 TCATTTACAATATGCACTTCTACATGG 58.161 33.333 0.00 0.00 0.00 3.66
3569 6950 9.612066 TCATCATTTACAATATGCACTTCTACA 57.388 29.630 0.00 0.00 0.00 2.74
3573 6954 9.403110 GGAATCATCATTTACAATATGCACTTC 57.597 33.333 0.00 0.00 0.00 3.01
3574 6955 9.139734 AGGAATCATCATTTACAATATGCACTT 57.860 29.630 0.00 0.00 0.00 3.16
3575 6956 8.701908 AGGAATCATCATTTACAATATGCACT 57.298 30.769 0.00 0.00 0.00 4.40
3590 6971 9.797642 AGCATATACAACAATTAGGAATCATCA 57.202 29.630 0.00 0.00 0.00 3.07
3642 7148 9.577110 CAAACATCTGAACAATAGCAAATACAT 57.423 29.630 0.00 0.00 0.00 2.29
3701 7208 2.162408 GCTATGCCAACTGTGAAACTCC 59.838 50.000 0.00 0.00 38.04 3.85
3702 7209 3.477899 GCTATGCCAACTGTGAAACTC 57.522 47.619 0.00 0.00 38.04 3.01
3766 7273 4.863131 ACATTAACTTTCCTCTTACTCGCG 59.137 41.667 0.00 0.00 0.00 5.87
3768 7275 9.582431 TCATTACATTAACTTTCCTCTTACTCG 57.418 33.333 0.00 0.00 0.00 4.18
3802 7309 2.588989 GCTCCTAGCTTGCTGGCT 59.411 61.111 5.26 8.80 45.29 4.75
3821 7328 1.923395 CAGACTGGGGGTGGGCTAA 60.923 63.158 0.00 0.00 0.00 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.