Multiple sequence alignment - TraesCS7A01G011300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G011300 chr7A 100.000 2431 0 0 1 2431 4975447 4973017 0.000000e+00 4490.0
1 TraesCS7A01G011300 chr7A 79.633 1036 164 19 727 1735 5053071 5052056 0.000000e+00 701.0
2 TraesCS7A01G011300 chr7A 77.935 920 159 29 977 1887 5434645 5435529 4.680000e-148 534.0
3 TraesCS7A01G011300 chr7A 81.759 614 106 4 1028 1636 6276800 6277412 2.830000e-140 508.0
4 TraesCS7A01G011300 chr7A 86.744 430 36 5 251 667 5053509 5053088 2.900000e-125 459.0
5 TraesCS7A01G011300 chr7A 79.837 615 112 8 1034 1643 5419389 5419996 3.770000e-119 438.0
6 TraesCS7A01G011300 chr7A 81.622 370 58 3 1747 2112 5600351 5600714 6.680000e-77 298.0
7 TraesCS7A01G011300 chr7A 81.351 370 59 3 1747 2112 6277492 6277855 3.110000e-75 292.0
8 TraesCS7A01G011300 chr7A 81.081 370 60 3 1747 2112 6218044 6218407 1.450000e-73 287.0
9 TraesCS7A01G011300 chr7A 100.000 106 0 0 3080 3185 4972368 4972263 2.510000e-46 196.0
10 TraesCS7A01G011300 chr4A 93.690 1680 73 17 769 2422 738719591 738717919 0.000000e+00 2484.0
11 TraesCS7A01G011300 chr4A 79.882 2028 283 61 165 2125 737739318 737737349 0.000000e+00 1369.0
12 TraesCS7A01G011300 chr4A 80.418 1435 216 40 743 2125 737944410 737945831 0.000000e+00 1033.0
13 TraesCS7A01G011300 chr4A 81.530 1137 186 14 1003 2125 738670003 738671129 0.000000e+00 915.0
14 TraesCS7A01G011300 chr4A 79.337 905 141 28 1223 2116 738080907 738081776 7.610000e-166 593.0
15 TraesCS7A01G011300 chr4A 83.031 607 102 1 1033 1638 738367168 738366562 1.670000e-152 549.0
16 TraesCS7A01G011300 chr4A 82.010 617 103 6 1028 1638 738052812 738053426 4.710000e-143 518.0
17 TraesCS7A01G011300 chr4A 81.199 617 108 6 1028 1638 737869345 737868731 1.030000e-134 490.0
18 TraesCS7A01G011300 chr4A 81.553 412 76 0 1226 1637 738034463 738034874 1.090000e-89 340.0
19 TraesCS7A01G011300 chr4A 84.366 339 51 2 1788 2125 737711080 737711417 6.590000e-87 331.0
20 TraesCS7A01G011300 chr4A 79.137 417 73 6 1706 2115 737868696 737868287 3.130000e-70 276.0
21 TraesCS7A01G011300 chr4A 92.715 151 10 1 1 151 323051787 323051638 1.920000e-52 217.0
22 TraesCS7A01G011300 chr4A 90.728 151 12 2 1 151 464762801 464762653 1.940000e-47 200.0
23 TraesCS7A01G011300 chr4A 97.436 39 1 0 312 350 738574575 738574537 2.050000e-07 67.6
24 TraesCS7A01G011300 chr7D 82.172 617 102 6 1028 1638 5017433 5018047 1.010000e-144 523.0
25 TraesCS7A01G011300 chrUn 81.351 370 59 3 1747 2112 334640866 334641229 3.110000e-75 292.0
26 TraesCS7A01G011300 chrUn 99.057 106 1 0 3080 3185 27176417 27176522 1.170000e-44 191.0
27 TraesCS7A01G011300 chrUn 99.057 106 1 0 3080 3185 27181880 27181985 1.170000e-44 191.0
28 TraesCS7A01G011300 chrUn 99.057 106 1 0 3080 3185 83556776 83556671 1.170000e-44 191.0
29 TraesCS7A01G011300 chrUn 99.057 106 1 0 3080 3185 183951664 183951769 1.170000e-44 191.0
30 TraesCS7A01G011300 chrUn 99.057 106 1 0 3080 3185 183968200 183968305 1.170000e-44 191.0
31 TraesCS7A01G011300 chrUn 99.057 106 1 0 3080 3185 183972291 183972396 1.170000e-44 191.0
32 TraesCS7A01G011300 chrUn 99.057 106 1 0 3080 3185 207806954 207807059 1.170000e-44 191.0
33 TraesCS7A01G011300 chrUn 99.057 106 1 0 3080 3185 207812421 207812526 1.170000e-44 191.0
34 TraesCS7A01G011300 chr4B 93.377 151 9 1 1 151 128527933 128527784 4.140000e-54 222.0
35 TraesCS7A01G011300 chr6A 92.810 153 9 2 1 151 189544515 189544363 1.490000e-53 220.0
36 TraesCS7A01G011300 chr6A 92.958 142 10 0 1 142 8710330 8710189 1.160000e-49 207.0
37 TraesCS7A01G011300 chr2A 92.568 148 11 0 1 148 102739004 102738857 2.490000e-51 213.0
38 TraesCS7A01G011300 chr2A 90.323 155 11 1 1 151 457494970 457494816 1.940000e-47 200.0
39 TraesCS7A01G011300 chr3A 90.260 154 12 1 1 151 149988648 149988801 6.970000e-47 198.0
40 TraesCS7A01G011300 chr1A 100.000 106 0 0 3080 3185 464902792 464902687 2.510000e-46 196.0
41 TraesCS7A01G011300 chr2B 88.820 161 14 2 1 158 749099235 749099076 9.010000e-46 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G011300 chr7A 4972263 4975447 3184 True 2343 4490 100.0000 1 3185 2 chr7A.!!$R1 3184
1 TraesCS7A01G011300 chr7A 5052056 5053509 1453 True 580 701 83.1885 251 1735 2 chr7A.!!$R2 1484
2 TraesCS7A01G011300 chr7A 5434645 5435529 884 False 534 534 77.9350 977 1887 1 chr7A.!!$F2 910
3 TraesCS7A01G011300 chr7A 5419389 5419996 607 False 438 438 79.8370 1034 1643 1 chr7A.!!$F1 609
4 TraesCS7A01G011300 chr7A 6276800 6277855 1055 False 400 508 81.5550 1028 2112 2 chr7A.!!$F5 1084
5 TraesCS7A01G011300 chr4A 738717919 738719591 1672 True 2484 2484 93.6900 769 2422 1 chr4A.!!$R6 1653
6 TraesCS7A01G011300 chr4A 737737349 737739318 1969 True 1369 1369 79.8820 165 2125 1 chr4A.!!$R3 1960
7 TraesCS7A01G011300 chr4A 737944410 737945831 1421 False 1033 1033 80.4180 743 2125 1 chr4A.!!$F2 1382
8 TraesCS7A01G011300 chr4A 738670003 738671129 1126 False 915 915 81.5300 1003 2125 1 chr4A.!!$F6 1122
9 TraesCS7A01G011300 chr4A 738080907 738081776 869 False 593 593 79.3370 1223 2116 1 chr4A.!!$F5 893
10 TraesCS7A01G011300 chr4A 738366562 738367168 606 True 549 549 83.0310 1033 1638 1 chr4A.!!$R4 605
11 TraesCS7A01G011300 chr4A 738052812 738053426 614 False 518 518 82.0100 1028 1638 1 chr4A.!!$F4 610
12 TraesCS7A01G011300 chr4A 737868287 737869345 1058 True 383 490 80.1680 1028 2115 2 chr4A.!!$R7 1087
13 TraesCS7A01G011300 chr7D 5017433 5018047 614 False 523 523 82.1720 1028 1638 1 chr7D.!!$F1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
623 697 0.035630 GATCTGCAGCTGGGTTCTGT 60.036 55.0 17.12 0.0 34.21 3.41 F
1863 2048 0.107017 TGGCCAATGAAGCTAGAGCC 60.107 55.0 0.61 0.0 43.38 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1930 2118 0.179936 CCCTTCTCCATGGCACTCTC 59.820 60.0 6.96 0.0 0.00 3.20 R
3155 3343 0.519077 GGGCTGCATAATCGCTAAGC 59.481 55.0 0.50 0.0 31.84 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.457436 TGATAATTTGTTACCCTTTACTTCTCC 57.543 33.333 0.00 0.00 0.00 3.71
32 33 8.818622 ATAATTTGTTACCCTTTACTTCTCCC 57.181 34.615 0.00 0.00 0.00 4.30
33 34 5.917545 TTTGTTACCCTTTACTTCTCCCT 57.082 39.130 0.00 0.00 0.00 4.20
34 35 5.917545 TTGTTACCCTTTACTTCTCCCTT 57.082 39.130 0.00 0.00 0.00 3.95
35 36 5.917545 TGTTACCCTTTACTTCTCCCTTT 57.082 39.130 0.00 0.00 0.00 3.11
36 37 5.872963 TGTTACCCTTTACTTCTCCCTTTC 58.127 41.667 0.00 0.00 0.00 2.62
37 38 5.370289 TGTTACCCTTTACTTCTCCCTTTCA 59.630 40.000 0.00 0.00 0.00 2.69
38 39 4.368565 ACCCTTTACTTCTCCCTTTCAC 57.631 45.455 0.00 0.00 0.00 3.18
39 40 3.720002 ACCCTTTACTTCTCCCTTTCACA 59.280 43.478 0.00 0.00 0.00 3.58
40 41 4.167307 ACCCTTTACTTCTCCCTTTCACAA 59.833 41.667 0.00 0.00 0.00 3.33
41 42 5.162980 ACCCTTTACTTCTCCCTTTCACAAT 60.163 40.000 0.00 0.00 0.00 2.71
42 43 5.775195 CCCTTTACTTCTCCCTTTCACAATT 59.225 40.000 0.00 0.00 0.00 2.32
43 44 6.267699 CCCTTTACTTCTCCCTTTCACAATTT 59.732 38.462 0.00 0.00 0.00 1.82
44 45 7.147976 CCTTTACTTCTCCCTTTCACAATTTG 58.852 38.462 0.00 0.00 0.00 2.32
45 46 4.590850 ACTTCTCCCTTTCACAATTTGC 57.409 40.909 0.00 0.00 0.00 3.68
46 47 3.321968 ACTTCTCCCTTTCACAATTTGCC 59.678 43.478 0.00 0.00 0.00 4.52
47 48 2.956132 TCTCCCTTTCACAATTTGCCA 58.044 42.857 0.00 0.00 0.00 4.92
48 49 2.627699 TCTCCCTTTCACAATTTGCCAC 59.372 45.455 0.00 0.00 0.00 5.01
49 50 1.691434 TCCCTTTCACAATTTGCCACC 59.309 47.619 0.00 0.00 0.00 4.61
50 51 1.270785 CCCTTTCACAATTTGCCACCC 60.271 52.381 0.00 0.00 0.00 4.61
51 52 1.415659 CCTTTCACAATTTGCCACCCA 59.584 47.619 0.00 0.00 0.00 4.51
52 53 2.038820 CCTTTCACAATTTGCCACCCAT 59.961 45.455 0.00 0.00 0.00 4.00
53 54 3.496515 CCTTTCACAATTTGCCACCCATT 60.497 43.478 0.00 0.00 0.00 3.16
54 55 4.262808 CCTTTCACAATTTGCCACCCATTA 60.263 41.667 0.00 0.00 0.00 1.90
55 56 5.490159 CTTTCACAATTTGCCACCCATTAT 58.510 37.500 0.00 0.00 0.00 1.28
56 57 4.734398 TCACAATTTGCCACCCATTATC 57.266 40.909 0.00 0.00 0.00 1.75
57 58 4.352009 TCACAATTTGCCACCCATTATCT 58.648 39.130 0.00 0.00 0.00 1.98
58 59 4.402155 TCACAATTTGCCACCCATTATCTC 59.598 41.667 0.00 0.00 0.00 2.75
59 60 4.160065 CACAATTTGCCACCCATTATCTCA 59.840 41.667 0.00 0.00 0.00 3.27
60 61 4.776837 ACAATTTGCCACCCATTATCTCAA 59.223 37.500 0.00 0.00 0.00 3.02
61 62 5.426185 ACAATTTGCCACCCATTATCTCAAT 59.574 36.000 0.00 0.00 0.00 2.57
62 63 5.540400 ATTTGCCACCCATTATCTCAATG 57.460 39.130 0.00 0.00 0.00 2.82
63 64 3.949586 TGCCACCCATTATCTCAATGA 57.050 42.857 0.00 0.00 0.00 2.57
64 65 3.554934 TGCCACCCATTATCTCAATGAC 58.445 45.455 0.00 0.00 0.00 3.06
65 66 2.549754 GCCACCCATTATCTCAATGACG 59.450 50.000 0.00 0.00 0.00 4.35
66 67 3.141398 CCACCCATTATCTCAATGACGG 58.859 50.000 0.00 0.00 0.00 4.79
67 68 3.141398 CACCCATTATCTCAATGACGGG 58.859 50.000 0.00 0.00 0.00 5.28
68 69 2.154462 CCCATTATCTCAATGACGGGC 58.846 52.381 0.00 0.00 0.00 6.13
69 70 1.800586 CCATTATCTCAATGACGGGCG 59.199 52.381 0.00 0.00 0.00 6.13
70 71 1.800586 CATTATCTCAATGACGGGCGG 59.199 52.381 0.00 0.00 0.00 6.13
71 72 0.105964 TTATCTCAATGACGGGCGGG 59.894 55.000 0.00 0.00 0.00 6.13
72 73 2.377628 TATCTCAATGACGGGCGGGC 62.378 60.000 0.00 0.00 0.00 6.13
91 92 4.047125 CGGGCCCCACCTGTCATT 62.047 66.667 18.66 0.00 40.35 2.57
92 93 2.043953 GGGCCCCACCTGTCATTC 60.044 66.667 12.23 0.00 39.10 2.67
93 94 2.616458 GGGCCCCACCTGTCATTCT 61.616 63.158 12.23 0.00 39.10 2.40
94 95 1.077429 GGCCCCACCTGTCATTCTC 60.077 63.158 0.00 0.00 34.51 2.87
95 96 1.685224 GCCCCACCTGTCATTCTCA 59.315 57.895 0.00 0.00 0.00 3.27
96 97 0.393537 GCCCCACCTGTCATTCTCAG 60.394 60.000 0.00 0.00 0.00 3.35
97 98 1.279496 CCCCACCTGTCATTCTCAGA 58.721 55.000 0.00 0.00 35.20 3.27
98 99 1.209019 CCCCACCTGTCATTCTCAGAG 59.791 57.143 0.00 0.00 35.20 3.35
99 100 1.209019 CCCACCTGTCATTCTCAGAGG 59.791 57.143 0.00 0.00 35.20 3.69
100 101 1.209019 CCACCTGTCATTCTCAGAGGG 59.791 57.143 0.00 0.00 35.20 4.30
101 102 1.209019 CACCTGTCATTCTCAGAGGGG 59.791 57.143 0.00 0.00 35.20 4.79
102 103 0.835941 CCTGTCATTCTCAGAGGGGG 59.164 60.000 0.00 0.00 35.20 5.40
103 104 0.179936 CTGTCATTCTCAGAGGGGGC 59.820 60.000 0.00 0.00 35.20 5.80
104 105 0.547471 TGTCATTCTCAGAGGGGGCA 60.547 55.000 0.00 0.00 0.00 5.36
105 106 0.620556 GTCATTCTCAGAGGGGGCAA 59.379 55.000 0.00 0.00 0.00 4.52
106 107 1.004745 GTCATTCTCAGAGGGGGCAAA 59.995 52.381 0.00 0.00 0.00 3.68
107 108 1.925255 TCATTCTCAGAGGGGGCAAAT 59.075 47.619 0.00 0.00 0.00 2.32
108 109 2.312741 TCATTCTCAGAGGGGGCAAATT 59.687 45.455 0.00 0.00 0.00 1.82
109 110 3.527253 TCATTCTCAGAGGGGGCAAATTA 59.473 43.478 0.00 0.00 0.00 1.40
110 111 4.168675 TCATTCTCAGAGGGGGCAAATTAT 59.831 41.667 0.00 0.00 0.00 1.28
111 112 3.582998 TCTCAGAGGGGGCAAATTATG 57.417 47.619 0.00 0.00 0.00 1.90
112 113 3.122480 TCTCAGAGGGGGCAAATTATGA 58.878 45.455 0.00 0.00 0.00 2.15
113 114 3.527253 TCTCAGAGGGGGCAAATTATGAA 59.473 43.478 0.00 0.00 0.00 2.57
114 115 4.017591 TCTCAGAGGGGGCAAATTATGAAA 60.018 41.667 0.00 0.00 0.00 2.69
115 116 4.280819 TCAGAGGGGGCAAATTATGAAAG 58.719 43.478 0.00 0.00 0.00 2.62
116 117 3.385755 CAGAGGGGGCAAATTATGAAAGG 59.614 47.826 0.00 0.00 0.00 3.11
117 118 2.700371 GAGGGGGCAAATTATGAAAGGG 59.300 50.000 0.00 0.00 0.00 3.95
118 119 2.317594 AGGGGGCAAATTATGAAAGGGA 59.682 45.455 0.00 0.00 0.00 4.20
119 120 3.111484 GGGGGCAAATTATGAAAGGGAA 58.889 45.455 0.00 0.00 0.00 3.97
120 121 3.521531 GGGGGCAAATTATGAAAGGGAAA 59.478 43.478 0.00 0.00 0.00 3.13
121 122 4.018870 GGGGGCAAATTATGAAAGGGAAAA 60.019 41.667 0.00 0.00 0.00 2.29
122 123 5.185454 GGGGCAAATTATGAAAGGGAAAAG 58.815 41.667 0.00 0.00 0.00 2.27
123 124 5.280470 GGGGCAAATTATGAAAGGGAAAAGT 60.280 40.000 0.00 0.00 0.00 2.66
124 125 6.070481 GGGGCAAATTATGAAAGGGAAAAGTA 60.070 38.462 0.00 0.00 0.00 2.24
125 126 7.390823 GGGCAAATTATGAAAGGGAAAAGTAA 58.609 34.615 0.00 0.00 0.00 2.24
126 127 7.549134 GGGCAAATTATGAAAGGGAAAAGTAAG 59.451 37.037 0.00 0.00 0.00 2.34
127 128 7.549134 GGCAAATTATGAAAGGGAAAAGTAAGG 59.451 37.037 0.00 0.00 0.00 2.69
128 129 8.311109 GCAAATTATGAAAGGGAAAAGTAAGGA 58.689 33.333 0.00 0.00 0.00 3.36
129 130 9.860898 CAAATTATGAAAGGGAAAAGTAAGGAG 57.139 33.333 0.00 0.00 0.00 3.69
130 131 9.601810 AAATTATGAAAGGGAAAAGTAAGGAGT 57.398 29.630 0.00 0.00 0.00 3.85
131 132 7.996098 TTATGAAAGGGAAAAGTAAGGAGTG 57.004 36.000 0.00 0.00 0.00 3.51
132 133 4.725490 TGAAAGGGAAAAGTAAGGAGTGG 58.275 43.478 0.00 0.00 0.00 4.00
133 134 2.881111 AGGGAAAAGTAAGGAGTGGC 57.119 50.000 0.00 0.00 0.00 5.01
134 135 2.062636 AGGGAAAAGTAAGGAGTGGCA 58.937 47.619 0.00 0.00 0.00 4.92
135 136 2.445525 AGGGAAAAGTAAGGAGTGGCAA 59.554 45.455 0.00 0.00 0.00 4.52
136 137 3.117284 AGGGAAAAGTAAGGAGTGGCAAA 60.117 43.478 0.00 0.00 0.00 3.68
137 138 3.832490 GGGAAAAGTAAGGAGTGGCAAAT 59.168 43.478 0.00 0.00 0.00 2.32
138 139 4.283467 GGGAAAAGTAAGGAGTGGCAAATT 59.717 41.667 0.00 0.00 0.00 1.82
139 140 5.479027 GGGAAAAGTAAGGAGTGGCAAATTA 59.521 40.000 0.00 0.00 0.00 1.40
140 141 6.154534 GGGAAAAGTAAGGAGTGGCAAATTAT 59.845 38.462 0.00 0.00 0.00 1.28
141 142 7.258441 GGAAAAGTAAGGAGTGGCAAATTATC 58.742 38.462 0.00 0.00 0.00 1.75
142 143 7.093945 GGAAAAGTAAGGAGTGGCAAATTATCA 60.094 37.037 0.00 0.00 0.00 2.15
143 144 7.775053 AAAGTAAGGAGTGGCAAATTATCAA 57.225 32.000 0.00 0.00 0.00 2.57
144 145 7.775053 AAGTAAGGAGTGGCAAATTATCAAA 57.225 32.000 0.00 0.00 0.00 2.69
145 146 7.961326 AGTAAGGAGTGGCAAATTATCAAAT 57.039 32.000 0.00 0.00 0.00 2.32
146 147 8.366359 AGTAAGGAGTGGCAAATTATCAAATT 57.634 30.769 0.00 0.00 36.87 1.82
147 148 8.815912 AGTAAGGAGTGGCAAATTATCAAATTT 58.184 29.630 0.00 0.00 44.35 1.82
157 158 6.892310 AAATTATCAAATTTGCCTCGCTTC 57.108 33.333 13.54 0.00 42.41 3.86
158 159 2.947448 ATCAAATTTGCCTCGCTTCC 57.053 45.000 13.54 0.00 0.00 3.46
159 160 0.887933 TCAAATTTGCCTCGCTTCCC 59.112 50.000 13.54 0.00 0.00 3.97
160 161 0.108662 CAAATTTGCCTCGCTTCCCC 60.109 55.000 5.01 0.00 0.00 4.81
161 162 0.251787 AAATTTGCCTCGCTTCCCCT 60.252 50.000 0.00 0.00 0.00 4.79
162 163 0.251787 AATTTGCCTCGCTTCCCCTT 60.252 50.000 0.00 0.00 0.00 3.95
163 164 0.681243 ATTTGCCTCGCTTCCCCTTC 60.681 55.000 0.00 0.00 0.00 3.46
174 175 2.115427 CTTCCCCTTCTCTTCTCCTCC 58.885 57.143 0.00 0.00 0.00 4.30
192 200 3.439540 CCATCGGCGTTGGGTTGG 61.440 66.667 25.58 11.87 0.00 3.77
193 201 3.439540 CATCGGCGTTGGGTTGGG 61.440 66.667 6.85 0.00 0.00 4.12
194 202 3.961414 ATCGGCGTTGGGTTGGGT 61.961 61.111 6.85 0.00 0.00 4.51
195 203 3.501040 ATCGGCGTTGGGTTGGGTT 62.501 57.895 6.85 0.00 0.00 4.11
198 206 4.337060 GCGTTGGGTTGGGTTCGC 62.337 66.667 0.00 0.00 37.17 4.70
243 271 4.406763 AGCCGGAGAGCTCCCCTT 62.407 66.667 13.00 0.00 46.96 3.95
244 272 2.444140 GCCGGAGAGCTCCCCTTA 60.444 66.667 13.00 0.00 46.96 2.69
249 277 1.052617 GGAGAGCTCCCCTTATCCAC 58.947 60.000 10.93 0.00 43.94 4.02
266 294 4.498520 CGATCTGTCGGCGCCAGT 62.499 66.667 28.98 5.29 44.00 4.00
267 295 2.805546 GATCTGTCGGCGCCAGTA 59.194 61.111 28.98 8.34 0.00 2.74
329 357 3.020026 CTCTTGTTGCGCAGGCGAG 62.020 63.158 18.96 16.56 44.10 5.03
410 456 2.511600 GCATGGTCGGGTTCCTCG 60.512 66.667 0.00 0.00 0.00 4.63
412 458 3.000819 ATGGTCGGGTTCCTCGCA 61.001 61.111 0.00 0.00 0.00 5.10
500 570 4.981794 GGTGATTAACCGTCAAATTCCTG 58.018 43.478 0.00 0.00 39.81 3.86
506 576 1.142060 ACCGTCAAATTCCTGTGGTGA 59.858 47.619 0.00 0.00 0.00 4.02
520 590 1.751924 GTGGTGAATACGCTCCTCTCT 59.248 52.381 0.00 0.00 0.00 3.10
526 596 3.219281 GAATACGCTCCTCTCTTCTCCT 58.781 50.000 0.00 0.00 0.00 3.69
545 615 3.265995 TCCTTCTACATTTCCCCTCAACC 59.734 47.826 0.00 0.00 0.00 3.77
551 621 4.890158 ACATTTCCCCTCAACCAATTTC 57.110 40.909 0.00 0.00 0.00 2.17
570 640 1.133513 TCATGCCTCCTCTCCTCTCTC 60.134 57.143 0.00 0.00 0.00 3.20
572 642 0.258484 TGCCTCCTCTCCTCTCTCTG 59.742 60.000 0.00 0.00 0.00 3.35
573 643 0.550914 GCCTCCTCTCCTCTCTCTGA 59.449 60.000 0.00 0.00 0.00 3.27
574 644 1.477558 GCCTCCTCTCCTCTCTCTGAG 60.478 61.905 0.00 0.00 42.30 3.35
576 650 3.045634 CCTCCTCTCCTCTCTCTGAGTA 58.954 54.545 4.32 0.00 41.11 2.59
588 662 4.702612 TCTCTCTGAGTAAGTGGTAAGCAG 59.297 45.833 4.32 0.00 0.00 4.24
603 677 5.476599 TGGTAAGCAGCACTACATGAATTTT 59.523 36.000 0.00 0.00 0.00 1.82
623 697 0.035630 GATCTGCAGCTGGGTTCTGT 60.036 55.000 17.12 0.00 34.21 3.41
644 718 6.014755 TCTGTCTTCTGAATGTTCTCATCTGT 60.015 38.462 0.00 0.00 32.56 3.41
667 741 4.901197 TTGCACCAGTAACTGAATCCTA 57.099 40.909 0.00 0.00 32.44 2.94
669 743 3.197766 TGCACCAGTAACTGAATCCTAGG 59.802 47.826 0.82 0.82 32.44 3.02
670 744 3.451178 GCACCAGTAACTGAATCCTAGGA 59.549 47.826 15.46 15.46 32.44 2.94
671 745 4.442192 GCACCAGTAACTGAATCCTAGGAG 60.442 50.000 18.34 5.89 32.44 3.69
672 746 4.712337 CACCAGTAACTGAATCCTAGGAGT 59.288 45.833 18.34 15.61 32.44 3.85
673 747 5.892119 CACCAGTAACTGAATCCTAGGAGTA 59.108 44.000 18.34 4.99 32.44 2.59
674 748 6.039941 CACCAGTAACTGAATCCTAGGAGTAG 59.960 46.154 18.34 16.21 32.44 2.57
675 749 5.536916 CCAGTAACTGAATCCTAGGAGTAGG 59.463 48.000 18.34 12.72 39.58 3.18
676 750 6.366340 CAGTAACTGAATCCTAGGAGTAGGA 58.634 44.000 18.34 3.64 45.40 2.94
677 751 6.488683 CAGTAACTGAATCCTAGGAGTAGGAG 59.511 46.154 18.34 13.19 44.96 3.69
691 765 5.673113 AGGAGTAGGAGTAGTAGAGGATGTT 59.327 44.000 0.00 0.00 0.00 2.71
693 767 6.409464 GGAGTAGGAGTAGTAGAGGATGTTCA 60.409 46.154 0.00 0.00 0.00 3.18
695 769 4.538738 AGGAGTAGTAGAGGATGTTCACC 58.461 47.826 0.00 0.00 0.00 4.02
709 783 9.646427 GAGGATGTTCACCTTGTAGAATATATC 57.354 37.037 0.00 0.00 37.93 1.63
710 784 9.159254 AGGATGTTCACCTTGTAGAATATATCA 57.841 33.333 0.00 0.00 33.55 2.15
753 827 1.084289 GGTTAAACTAGGTGCAGGCG 58.916 55.000 0.00 0.00 0.00 5.52
779 859 5.447818 CCGCCAATTTCAGATTTCAGTAGTC 60.448 44.000 0.00 0.00 0.00 2.59
866 950 8.430801 ACTAATTACAAACATGCATCTCTCTC 57.569 34.615 0.00 0.00 0.00 3.20
867 951 8.263640 ACTAATTACAAACATGCATCTCTCTCT 58.736 33.333 0.00 0.00 0.00 3.10
868 952 7.934855 AATTACAAACATGCATCTCTCTCTT 57.065 32.000 0.00 0.00 0.00 2.85
869 953 7.934855 ATTACAAACATGCATCTCTCTCTTT 57.065 32.000 0.00 0.00 0.00 2.52
870 954 9.453572 AATTACAAACATGCATCTCTCTCTTTA 57.546 29.630 0.00 0.00 0.00 1.85
871 955 6.734104 ACAAACATGCATCTCTCTCTTTAC 57.266 37.500 0.00 0.00 0.00 2.01
872 956 6.233434 ACAAACATGCATCTCTCTCTTTACA 58.767 36.000 0.00 0.00 0.00 2.41
873 957 6.883217 ACAAACATGCATCTCTCTCTTTACAT 59.117 34.615 0.00 0.00 0.00 2.29
874 958 7.065563 ACAAACATGCATCTCTCTCTTTACATC 59.934 37.037 0.00 0.00 0.00 3.06
875 959 6.482898 ACATGCATCTCTCTCTTTACATCT 57.517 37.500 0.00 0.00 0.00 2.90
876 960 6.514947 ACATGCATCTCTCTCTTTACATCTC 58.485 40.000 0.00 0.00 0.00 2.75
911 1016 8.727100 ATATGTGTATACATCTTTGGAGGAGA 57.273 34.615 9.18 0.00 44.00 3.71
912 1017 7.623999 ATGTGTATACATCTTTGGAGGAGAT 57.376 36.000 9.18 0.00 44.00 2.75
913 1018 8.727100 ATGTGTATACATCTTTGGAGGAGATA 57.273 34.615 9.18 0.00 44.00 1.98
915 1020 9.159254 TGTGTATACATCTTTGGAGGAGATAAT 57.841 33.333 9.18 0.00 32.75 1.28
929 1048 9.256228 TGGAGGAGATAATAATACATGACTACC 57.744 37.037 0.00 0.00 0.00 3.18
973 1107 1.957877 GATACCTCTTCAGGCGCTACT 59.042 52.381 7.64 0.00 45.05 2.57
1008 1142 2.914289 CAGCTCTGGACCCATCCC 59.086 66.667 0.00 0.00 45.59 3.85
1573 1729 2.440065 GATGAACATGGCCGGGCA 60.440 61.111 34.65 34.65 0.00 5.36
1670 1831 9.195411 GGTTTATGTATGCAATGGAATTATGTG 57.805 33.333 0.00 0.00 32.46 3.21
1671 1832 9.964303 GTTTATGTATGCAATGGAATTATGTGA 57.036 29.630 0.00 0.00 32.46 3.58
1674 1835 7.585579 TGTATGCAATGGAATTATGTGATGT 57.414 32.000 0.00 0.00 32.46 3.06
1676 1837 6.971726 ATGCAATGGAATTATGTGATGTCT 57.028 33.333 0.00 0.00 32.46 3.41
1677 1838 6.778834 TGCAATGGAATTATGTGATGTCTT 57.221 33.333 0.00 0.00 32.46 3.01
1678 1839 7.878547 TGCAATGGAATTATGTGATGTCTTA 57.121 32.000 0.00 0.00 32.46 2.10
1679 1840 7.706159 TGCAATGGAATTATGTGATGTCTTAC 58.294 34.615 0.00 0.00 32.46 2.34
1680 1841 7.141363 GCAATGGAATTATGTGATGTCTTACC 58.859 38.462 0.00 0.00 32.46 2.85
1681 1842 7.013655 GCAATGGAATTATGTGATGTCTTACCT 59.986 37.037 0.00 0.00 32.46 3.08
1836 2021 1.520342 GATGCTGGAGCTCGTCACC 60.520 63.158 7.83 0.00 42.66 4.02
1858 2043 1.077787 CGGGTGGCCAATGAAGCTA 60.078 57.895 7.24 0.00 0.00 3.32
1863 2048 0.107017 TGGCCAATGAAGCTAGAGCC 60.107 55.000 0.61 0.00 43.38 4.70
1901 2089 3.357079 GGCGCACCACTTCACTGG 61.357 66.667 10.83 0.00 37.33 4.00
1914 2102 2.655090 TCACTGGACTGATGGCAAAA 57.345 45.000 0.00 0.00 0.00 2.44
1918 2106 2.624838 ACTGGACTGATGGCAAAACAAG 59.375 45.455 0.00 0.00 0.00 3.16
1925 2113 3.791245 TGATGGCAAAACAAGTGGAAAC 58.209 40.909 0.00 0.00 0.00 2.78
1930 2118 2.277834 GCAAAACAAGTGGAAACGTTCG 59.722 45.455 0.00 0.00 0.00 3.95
2190 2378 4.097135 TGGATTGTTGTTGTCGATGTTTGT 59.903 37.500 0.00 0.00 0.00 2.83
2206 2394 2.222007 TTGTTGTGTTTGAGCCATGC 57.778 45.000 0.00 0.00 0.00 4.06
2217 2405 1.610038 TGAGCCATGCTTGTTGTTCTG 59.390 47.619 0.00 0.00 39.88 3.02
2226 2414 3.568007 TGCTTGTTGTTCTGGTTGTATCC 59.432 43.478 0.00 0.00 0.00 2.59
2228 2416 4.398319 CTTGTTGTTCTGGTTGTATCCCT 58.602 43.478 0.00 0.00 0.00 4.20
2244 2432 1.746220 TCCCTCGTTTGTTGGTTTGTG 59.254 47.619 0.00 0.00 0.00 3.33
2318 2506 6.310960 TCGTGATCGTATTGGTTTGAAATTG 58.689 36.000 0.00 0.00 38.33 2.32
2352 2540 5.177327 GTGCAATTTCCACAAGGTGTAATTG 59.823 40.000 19.22 19.22 41.31 2.32
2360 2548 5.304101 TCCACAAGGTGTAATTGCAGAAAAT 59.696 36.000 0.00 0.00 35.89 1.82
2423 2611 9.809096 AGTAGTGAGATCTATGTGTTGTTATTG 57.191 33.333 0.00 0.00 0.00 1.90
2424 2612 9.803315 GTAGTGAGATCTATGTGTTGTTATTGA 57.197 33.333 0.00 0.00 0.00 2.57
2426 2614 9.322773 AGTGAGATCTATGTGTTGTTATTGATG 57.677 33.333 0.00 0.00 0.00 3.07
2427 2615 9.102757 GTGAGATCTATGTGTTGTTATTGATGT 57.897 33.333 0.00 0.00 0.00 3.06
2428 2616 9.101655 TGAGATCTATGTGTTGTTATTGATGTG 57.898 33.333 0.00 0.00 0.00 3.21
2429 2617 8.442632 AGATCTATGTGTTGTTATTGATGTGG 57.557 34.615 0.00 0.00 0.00 4.17
2430 2618 7.500227 AGATCTATGTGTTGTTATTGATGTGGG 59.500 37.037 0.00 0.00 0.00 4.61
3099 3287 2.915349 CCAATGACATCCTCCACAGAG 58.085 52.381 0.00 0.00 40.09 3.35
3100 3288 2.502947 CCAATGACATCCTCCACAGAGA 59.497 50.000 0.00 0.00 43.39 3.10
3101 3289 3.054875 CCAATGACATCCTCCACAGAGAA 60.055 47.826 0.00 0.00 43.39 2.87
3102 3290 4.384978 CCAATGACATCCTCCACAGAGAAT 60.385 45.833 0.00 0.00 43.39 2.40
3103 3291 5.191426 CAATGACATCCTCCACAGAGAATT 58.809 41.667 0.00 0.00 43.39 2.17
3104 3292 4.478206 TGACATCCTCCACAGAGAATTC 57.522 45.455 0.00 0.00 43.39 2.17
3105 3293 3.840078 TGACATCCTCCACAGAGAATTCA 59.160 43.478 8.44 0.00 43.39 2.57
3106 3294 4.187694 GACATCCTCCACAGAGAATTCAC 58.812 47.826 8.44 0.74 43.39 3.18
3107 3295 3.193263 CATCCTCCACAGAGAATTCACG 58.807 50.000 8.44 1.11 43.39 4.35
3108 3296 1.066858 TCCTCCACAGAGAATTCACGC 60.067 52.381 8.44 0.00 43.39 5.34
3109 3297 1.363744 CTCCACAGAGAATTCACGCC 58.636 55.000 8.44 0.00 43.39 5.68
3110 3298 0.976641 TCCACAGAGAATTCACGCCT 59.023 50.000 8.44 0.00 0.00 5.52
3111 3299 1.066858 TCCACAGAGAATTCACGCCTC 60.067 52.381 8.44 0.00 0.00 4.70
3112 3300 1.066573 CCACAGAGAATTCACGCCTCT 60.067 52.381 8.44 0.00 37.74 3.69
3116 3304 3.176552 AGAGAATTCACGCCTCTGATG 57.823 47.619 8.44 0.00 36.07 3.07
3117 3305 2.499289 AGAGAATTCACGCCTCTGATGT 59.501 45.455 8.44 0.00 36.07 3.06
3118 3306 3.055530 AGAGAATTCACGCCTCTGATGTT 60.056 43.478 8.44 0.00 36.07 2.71
3119 3307 3.679389 AGAATTCACGCCTCTGATGTTT 58.321 40.909 8.44 0.00 0.00 2.83
3120 3308 3.686726 AGAATTCACGCCTCTGATGTTTC 59.313 43.478 8.44 0.00 0.00 2.78
3121 3309 2.542020 TTCACGCCTCTGATGTTTCA 57.458 45.000 0.00 0.00 0.00 2.69
3131 3319 1.896220 TGATGTTTCAGAGTGGTGGC 58.104 50.000 0.00 0.00 0.00 5.01
3132 3320 1.142667 TGATGTTTCAGAGTGGTGGCA 59.857 47.619 0.00 0.00 0.00 4.92
3133 3321 2.229792 GATGTTTCAGAGTGGTGGCAA 58.770 47.619 0.00 0.00 0.00 4.52
3134 3322 2.136298 TGTTTCAGAGTGGTGGCAAA 57.864 45.000 0.00 0.00 0.00 3.68
3135 3323 2.023673 TGTTTCAGAGTGGTGGCAAAG 58.976 47.619 0.00 0.00 0.00 2.77
3136 3324 2.024414 GTTTCAGAGTGGTGGCAAAGT 58.976 47.619 0.00 0.00 0.00 2.66
3137 3325 2.427095 GTTTCAGAGTGGTGGCAAAGTT 59.573 45.455 0.00 0.00 0.00 2.66
3138 3326 1.967319 TCAGAGTGGTGGCAAAGTTC 58.033 50.000 0.00 0.00 0.00 3.01
3139 3327 0.954452 CAGAGTGGTGGCAAAGTTCC 59.046 55.000 0.00 0.00 0.00 3.62
3140 3328 0.846693 AGAGTGGTGGCAAAGTTCCT 59.153 50.000 0.00 0.00 0.00 3.36
3141 3329 1.215423 AGAGTGGTGGCAAAGTTCCTT 59.785 47.619 0.00 0.00 0.00 3.36
3142 3330 1.609072 GAGTGGTGGCAAAGTTCCTTC 59.391 52.381 0.00 0.00 0.00 3.46
3143 3331 1.064017 AGTGGTGGCAAAGTTCCTTCA 60.064 47.619 0.00 0.00 0.00 3.02
3144 3332 1.338020 GTGGTGGCAAAGTTCCTTCAG 59.662 52.381 0.00 0.00 0.00 3.02
3145 3333 0.961753 GGTGGCAAAGTTCCTTCAGG 59.038 55.000 0.00 0.00 0.00 3.86
3146 3334 1.478654 GGTGGCAAAGTTCCTTCAGGA 60.479 52.381 0.00 0.00 43.73 3.86
3157 3345 3.136641 TCCTTCAGGAATTAGGGAGCT 57.863 47.619 0.00 0.00 42.18 4.09
3158 3346 3.464828 TCCTTCAGGAATTAGGGAGCTT 58.535 45.455 0.00 0.00 42.18 3.74
3159 3347 4.631234 TCCTTCAGGAATTAGGGAGCTTA 58.369 43.478 0.00 0.00 42.18 3.09
3160 3348 4.656112 TCCTTCAGGAATTAGGGAGCTTAG 59.344 45.833 0.00 0.00 42.18 2.18
3161 3349 4.384940 CTTCAGGAATTAGGGAGCTTAGC 58.615 47.826 0.00 0.00 0.00 3.09
3162 3350 2.365617 TCAGGAATTAGGGAGCTTAGCG 59.634 50.000 0.00 0.00 0.00 4.26
3163 3351 2.365617 CAGGAATTAGGGAGCTTAGCGA 59.634 50.000 0.00 0.00 0.00 4.93
3164 3352 3.007398 CAGGAATTAGGGAGCTTAGCGAT 59.993 47.826 0.00 0.00 0.00 4.58
3165 3353 3.648545 AGGAATTAGGGAGCTTAGCGATT 59.351 43.478 0.00 0.00 0.00 3.34
3166 3354 4.838986 AGGAATTAGGGAGCTTAGCGATTA 59.161 41.667 0.00 0.00 0.00 1.75
3167 3355 5.485708 AGGAATTAGGGAGCTTAGCGATTAT 59.514 40.000 0.00 0.00 0.00 1.28
3168 3356 5.582665 GGAATTAGGGAGCTTAGCGATTATG 59.417 44.000 0.00 0.00 0.00 1.90
3169 3357 2.464157 AGGGAGCTTAGCGATTATGC 57.536 50.000 0.00 0.00 33.73 3.14
3170 3358 1.694150 AGGGAGCTTAGCGATTATGCA 59.306 47.619 0.00 0.00 35.47 3.96
3171 3359 2.072298 GGGAGCTTAGCGATTATGCAG 58.928 52.381 0.00 0.00 35.47 4.41
3172 3360 1.462670 GGAGCTTAGCGATTATGCAGC 59.537 52.381 0.00 0.00 35.47 5.25
3173 3361 1.462670 GAGCTTAGCGATTATGCAGCC 59.537 52.381 0.00 0.00 35.21 4.85
3174 3362 0.519077 GCTTAGCGATTATGCAGCCC 59.481 55.000 0.00 0.00 37.31 5.19
3175 3363 0.792640 CTTAGCGATTATGCAGCCCG 59.207 55.000 0.00 0.00 37.31 6.13
3176 3364 1.227999 TTAGCGATTATGCAGCCCGC 61.228 55.000 14.81 14.81 45.39 6.13
3177 3365 4.374702 GCGATTATGCAGCCCGCG 62.375 66.667 0.00 0.00 46.97 6.46
3178 3366 2.661537 CGATTATGCAGCCCGCGA 60.662 61.111 8.23 0.00 46.97 5.87
3179 3367 2.939022 GATTATGCAGCCCGCGAC 59.061 61.111 8.23 0.00 46.97 5.19
3180 3368 1.887242 GATTATGCAGCCCGCGACA 60.887 57.895 8.23 0.00 46.97 4.35
3181 3369 1.436195 GATTATGCAGCCCGCGACAA 61.436 55.000 8.23 0.00 46.97 3.18
3182 3370 1.029408 ATTATGCAGCCCGCGACAAA 61.029 50.000 8.23 0.00 46.97 2.83
3183 3371 1.917782 TTATGCAGCCCGCGACAAAC 61.918 55.000 8.23 0.00 46.97 2.93
3184 3372 2.796483 TATGCAGCCCGCGACAAACT 62.796 55.000 8.23 0.00 46.97 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.457436 GGAGAAGTAAAGGGTAACAAATTATCA 57.543 33.333 0.00 0.00 39.74 2.15
6 7 8.900781 GGGAGAAGTAAAGGGTAACAAATTATC 58.099 37.037 0.00 0.00 39.74 1.75
7 8 8.621073 AGGGAGAAGTAAAGGGTAACAAATTAT 58.379 33.333 0.00 0.00 39.74 1.28
8 9 7.992295 AGGGAGAAGTAAAGGGTAACAAATTA 58.008 34.615 0.00 0.00 39.74 1.40
9 10 6.860034 AGGGAGAAGTAAAGGGTAACAAATT 58.140 36.000 0.00 0.00 39.74 1.82
10 11 6.464530 AGGGAGAAGTAAAGGGTAACAAAT 57.535 37.500 0.00 0.00 39.74 2.32
11 12 5.917545 AGGGAGAAGTAAAGGGTAACAAA 57.082 39.130 0.00 0.00 39.74 2.83
12 13 5.917545 AAGGGAGAAGTAAAGGGTAACAA 57.082 39.130 0.00 0.00 39.74 2.83
13 14 5.370289 TGAAAGGGAGAAGTAAAGGGTAACA 59.630 40.000 0.00 0.00 39.74 2.41
14 15 5.704515 GTGAAAGGGAGAAGTAAAGGGTAAC 59.295 44.000 0.00 0.00 0.00 2.50
15 16 5.370289 TGTGAAAGGGAGAAGTAAAGGGTAA 59.630 40.000 0.00 0.00 0.00 2.85
16 17 4.909088 TGTGAAAGGGAGAAGTAAAGGGTA 59.091 41.667 0.00 0.00 0.00 3.69
17 18 3.720002 TGTGAAAGGGAGAAGTAAAGGGT 59.280 43.478 0.00 0.00 0.00 4.34
18 19 4.367039 TGTGAAAGGGAGAAGTAAAGGG 57.633 45.455 0.00 0.00 0.00 3.95
19 20 6.901081 AATTGTGAAAGGGAGAAGTAAAGG 57.099 37.500 0.00 0.00 0.00 3.11
20 21 6.642540 GCAAATTGTGAAAGGGAGAAGTAAAG 59.357 38.462 0.00 0.00 0.00 1.85
21 22 6.462347 GGCAAATTGTGAAAGGGAGAAGTAAA 60.462 38.462 0.00 0.00 0.00 2.01
22 23 5.010617 GGCAAATTGTGAAAGGGAGAAGTAA 59.989 40.000 0.00 0.00 0.00 2.24
23 24 4.522789 GGCAAATTGTGAAAGGGAGAAGTA 59.477 41.667 0.00 0.00 0.00 2.24
24 25 3.321968 GGCAAATTGTGAAAGGGAGAAGT 59.678 43.478 0.00 0.00 0.00 3.01
25 26 3.321682 TGGCAAATTGTGAAAGGGAGAAG 59.678 43.478 0.00 0.00 0.00 2.85
26 27 3.069443 GTGGCAAATTGTGAAAGGGAGAA 59.931 43.478 0.00 0.00 0.00 2.87
27 28 2.627699 GTGGCAAATTGTGAAAGGGAGA 59.372 45.455 0.00 0.00 0.00 3.71
28 29 2.289010 GGTGGCAAATTGTGAAAGGGAG 60.289 50.000 0.00 0.00 0.00 4.30
29 30 1.691434 GGTGGCAAATTGTGAAAGGGA 59.309 47.619 0.00 0.00 0.00 4.20
30 31 1.270785 GGGTGGCAAATTGTGAAAGGG 60.271 52.381 0.00 0.00 0.00 3.95
31 32 1.415659 TGGGTGGCAAATTGTGAAAGG 59.584 47.619 0.00 0.00 0.00 3.11
32 33 2.906691 TGGGTGGCAAATTGTGAAAG 57.093 45.000 0.00 0.00 0.00 2.62
33 34 3.853355 AATGGGTGGCAAATTGTGAAA 57.147 38.095 0.00 0.00 0.00 2.69
34 35 4.776837 AGATAATGGGTGGCAAATTGTGAA 59.223 37.500 0.00 0.00 0.00 3.18
35 36 4.352009 AGATAATGGGTGGCAAATTGTGA 58.648 39.130 0.00 0.00 0.00 3.58
36 37 4.160065 TGAGATAATGGGTGGCAAATTGTG 59.840 41.667 0.00 0.00 0.00 3.33
37 38 4.352009 TGAGATAATGGGTGGCAAATTGT 58.648 39.130 0.00 0.00 0.00 2.71
38 39 5.341872 TTGAGATAATGGGTGGCAAATTG 57.658 39.130 0.00 0.00 0.00 2.32
39 40 5.662208 TCATTGAGATAATGGGTGGCAAATT 59.338 36.000 0.00 0.00 0.00 1.82
40 41 5.069516 GTCATTGAGATAATGGGTGGCAAAT 59.930 40.000 0.00 0.00 0.00 2.32
41 42 4.402155 GTCATTGAGATAATGGGTGGCAAA 59.598 41.667 0.00 0.00 0.00 3.68
42 43 3.953612 GTCATTGAGATAATGGGTGGCAA 59.046 43.478 0.00 0.00 0.00 4.52
43 44 3.554934 GTCATTGAGATAATGGGTGGCA 58.445 45.455 0.00 0.00 0.00 4.92
44 45 2.549754 CGTCATTGAGATAATGGGTGGC 59.450 50.000 0.00 0.00 0.00 5.01
45 46 3.141398 CCGTCATTGAGATAATGGGTGG 58.859 50.000 0.00 0.00 0.00 4.61
46 47 3.141398 CCCGTCATTGAGATAATGGGTG 58.859 50.000 0.00 0.00 0.00 4.61
47 48 2.487265 GCCCGTCATTGAGATAATGGGT 60.487 50.000 0.00 0.00 37.72 4.51
48 49 2.154462 GCCCGTCATTGAGATAATGGG 58.846 52.381 0.00 0.00 38.47 4.00
49 50 1.800586 CGCCCGTCATTGAGATAATGG 59.199 52.381 0.00 0.00 0.00 3.16
50 51 1.800586 CCGCCCGTCATTGAGATAATG 59.199 52.381 0.00 0.00 0.00 1.90
51 52 1.270839 CCCGCCCGTCATTGAGATAAT 60.271 52.381 0.00 0.00 0.00 1.28
52 53 0.105964 CCCGCCCGTCATTGAGATAA 59.894 55.000 0.00 0.00 0.00 1.75
53 54 1.745890 CCCGCCCGTCATTGAGATA 59.254 57.895 0.00 0.00 0.00 1.98
54 55 2.505982 CCCGCCCGTCATTGAGAT 59.494 61.111 0.00 0.00 0.00 2.75
55 56 4.467084 GCCCGCCCGTCATTGAGA 62.467 66.667 0.00 0.00 0.00 3.27
74 75 3.995506 GAATGACAGGTGGGGCCCG 62.996 68.421 19.83 5.76 38.26 6.13
75 76 2.043953 GAATGACAGGTGGGGCCC 60.044 66.667 18.17 18.17 38.26 5.80
76 77 1.077429 GAGAATGACAGGTGGGGCC 60.077 63.158 0.00 0.00 37.58 5.80
77 78 0.393537 CTGAGAATGACAGGTGGGGC 60.394 60.000 0.00 0.00 0.00 5.80
78 79 1.209019 CTCTGAGAATGACAGGTGGGG 59.791 57.143 0.00 0.00 0.00 4.96
79 80 1.209019 CCTCTGAGAATGACAGGTGGG 59.791 57.143 6.17 0.00 0.00 4.61
80 81 1.209019 CCCTCTGAGAATGACAGGTGG 59.791 57.143 6.17 0.00 0.00 4.61
81 82 1.209019 CCCCTCTGAGAATGACAGGTG 59.791 57.143 6.17 0.00 0.00 4.00
82 83 1.577736 CCCCTCTGAGAATGACAGGT 58.422 55.000 6.17 0.00 0.00 4.00
83 84 0.835941 CCCCCTCTGAGAATGACAGG 59.164 60.000 6.17 0.00 0.00 4.00
84 85 0.179936 GCCCCCTCTGAGAATGACAG 59.820 60.000 6.17 0.00 0.00 3.51
85 86 0.547471 TGCCCCCTCTGAGAATGACA 60.547 55.000 6.17 0.00 0.00 3.58
86 87 0.620556 TTGCCCCCTCTGAGAATGAC 59.379 55.000 6.17 0.00 0.00 3.06
87 88 1.371467 TTTGCCCCCTCTGAGAATGA 58.629 50.000 6.17 0.00 0.00 2.57
88 89 2.449137 ATTTGCCCCCTCTGAGAATG 57.551 50.000 6.17 0.00 0.00 2.67
89 90 4.168675 TCATAATTTGCCCCCTCTGAGAAT 59.831 41.667 6.17 0.00 0.00 2.40
90 91 3.527253 TCATAATTTGCCCCCTCTGAGAA 59.473 43.478 6.17 0.00 0.00 2.87
91 92 3.122480 TCATAATTTGCCCCCTCTGAGA 58.878 45.455 6.17 0.00 0.00 3.27
92 93 3.582998 TCATAATTTGCCCCCTCTGAG 57.417 47.619 0.00 0.00 0.00 3.35
93 94 4.280819 CTTTCATAATTTGCCCCCTCTGA 58.719 43.478 0.00 0.00 0.00 3.27
94 95 3.385755 CCTTTCATAATTTGCCCCCTCTG 59.614 47.826 0.00 0.00 0.00 3.35
95 96 3.630828 CCCTTTCATAATTTGCCCCCTCT 60.631 47.826 0.00 0.00 0.00 3.69
96 97 2.700371 CCCTTTCATAATTTGCCCCCTC 59.300 50.000 0.00 0.00 0.00 4.30
97 98 2.317594 TCCCTTTCATAATTTGCCCCCT 59.682 45.455 0.00 0.00 0.00 4.79
98 99 2.758130 TCCCTTTCATAATTTGCCCCC 58.242 47.619 0.00 0.00 0.00 5.40
99 100 4.835284 TTTCCCTTTCATAATTTGCCCC 57.165 40.909 0.00 0.00 0.00 5.80
100 101 5.804639 ACTTTTCCCTTTCATAATTTGCCC 58.195 37.500 0.00 0.00 0.00 5.36
101 102 7.549134 CCTTACTTTTCCCTTTCATAATTTGCC 59.451 37.037 0.00 0.00 0.00 4.52
102 103 8.311109 TCCTTACTTTTCCCTTTCATAATTTGC 58.689 33.333 0.00 0.00 0.00 3.68
103 104 9.860898 CTCCTTACTTTTCCCTTTCATAATTTG 57.139 33.333 0.00 0.00 0.00 2.32
104 105 9.601810 ACTCCTTACTTTTCCCTTTCATAATTT 57.398 29.630 0.00 0.00 0.00 1.82
105 106 9.025041 CACTCCTTACTTTTCCCTTTCATAATT 57.975 33.333 0.00 0.00 0.00 1.40
106 107 7.615757 CCACTCCTTACTTTTCCCTTTCATAAT 59.384 37.037 0.00 0.00 0.00 1.28
107 108 6.946009 CCACTCCTTACTTTTCCCTTTCATAA 59.054 38.462 0.00 0.00 0.00 1.90
108 109 6.481643 CCACTCCTTACTTTTCCCTTTCATA 58.518 40.000 0.00 0.00 0.00 2.15
109 110 5.325239 CCACTCCTTACTTTTCCCTTTCAT 58.675 41.667 0.00 0.00 0.00 2.57
110 111 4.725490 CCACTCCTTACTTTTCCCTTTCA 58.275 43.478 0.00 0.00 0.00 2.69
111 112 3.506455 GCCACTCCTTACTTTTCCCTTTC 59.494 47.826 0.00 0.00 0.00 2.62
112 113 3.117284 TGCCACTCCTTACTTTTCCCTTT 60.117 43.478 0.00 0.00 0.00 3.11
113 114 2.445525 TGCCACTCCTTACTTTTCCCTT 59.554 45.455 0.00 0.00 0.00 3.95
114 115 2.062636 TGCCACTCCTTACTTTTCCCT 58.937 47.619 0.00 0.00 0.00 4.20
115 116 2.579410 TGCCACTCCTTACTTTTCCC 57.421 50.000 0.00 0.00 0.00 3.97
116 117 5.468540 AATTTGCCACTCCTTACTTTTCC 57.531 39.130 0.00 0.00 0.00 3.13
117 118 7.826690 TGATAATTTGCCACTCCTTACTTTTC 58.173 34.615 0.00 0.00 0.00 2.29
118 119 7.775053 TGATAATTTGCCACTCCTTACTTTT 57.225 32.000 0.00 0.00 0.00 2.27
119 120 7.775053 TTGATAATTTGCCACTCCTTACTTT 57.225 32.000 0.00 0.00 0.00 2.66
120 121 7.775053 TTTGATAATTTGCCACTCCTTACTT 57.225 32.000 0.00 0.00 0.00 2.24
121 122 7.961326 ATTTGATAATTTGCCACTCCTTACT 57.039 32.000 0.00 0.00 0.00 2.24
134 135 5.812127 GGAAGCGAGGCAAATTTGATAATTT 59.188 36.000 22.31 7.95 43.09 1.82
135 136 5.351458 GGAAGCGAGGCAAATTTGATAATT 58.649 37.500 22.31 7.76 35.49 1.40
136 137 4.202151 GGGAAGCGAGGCAAATTTGATAAT 60.202 41.667 22.31 3.62 0.00 1.28
137 138 3.130340 GGGAAGCGAGGCAAATTTGATAA 59.870 43.478 22.31 0.00 0.00 1.75
138 139 2.687935 GGGAAGCGAGGCAAATTTGATA 59.312 45.455 22.31 0.00 0.00 2.15
139 140 1.478105 GGGAAGCGAGGCAAATTTGAT 59.522 47.619 22.31 9.13 0.00 2.57
140 141 0.887933 GGGAAGCGAGGCAAATTTGA 59.112 50.000 22.31 0.00 0.00 2.69
141 142 0.108662 GGGGAAGCGAGGCAAATTTG 60.109 55.000 14.03 14.03 0.00 2.32
142 143 0.251787 AGGGGAAGCGAGGCAAATTT 60.252 50.000 0.00 0.00 0.00 1.82
143 144 0.251787 AAGGGGAAGCGAGGCAAATT 60.252 50.000 0.00 0.00 0.00 1.82
144 145 0.681243 GAAGGGGAAGCGAGGCAAAT 60.681 55.000 0.00 0.00 0.00 2.32
145 146 1.303317 GAAGGGGAAGCGAGGCAAA 60.303 57.895 0.00 0.00 0.00 3.68
146 147 2.185310 GAGAAGGGGAAGCGAGGCAA 62.185 60.000 0.00 0.00 0.00 4.52
147 148 2.607750 AGAAGGGGAAGCGAGGCA 60.608 61.111 0.00 0.00 0.00 4.75
148 149 1.904990 AAGAGAAGGGGAAGCGAGGC 61.905 60.000 0.00 0.00 0.00 4.70
149 150 0.176910 GAAGAGAAGGGGAAGCGAGG 59.823 60.000 0.00 0.00 0.00 4.63
150 151 1.136110 GAGAAGAGAAGGGGAAGCGAG 59.864 57.143 0.00 0.00 0.00 5.03
151 152 1.187087 GAGAAGAGAAGGGGAAGCGA 58.813 55.000 0.00 0.00 0.00 4.93
152 153 0.176910 GGAGAAGAGAAGGGGAAGCG 59.823 60.000 0.00 0.00 0.00 4.68
153 154 1.484653 GAGGAGAAGAGAAGGGGAAGC 59.515 57.143 0.00 0.00 0.00 3.86
154 155 2.115427 GGAGGAGAAGAGAAGGGGAAG 58.885 57.143 0.00 0.00 0.00 3.46
155 156 1.273896 GGGAGGAGAAGAGAAGGGGAA 60.274 57.143 0.00 0.00 0.00 3.97
156 157 0.340208 GGGAGGAGAAGAGAAGGGGA 59.660 60.000 0.00 0.00 0.00 4.81
157 158 0.692756 GGGGAGGAGAAGAGAAGGGG 60.693 65.000 0.00 0.00 0.00 4.79
158 159 0.043334 TGGGGAGGAGAAGAGAAGGG 59.957 60.000 0.00 0.00 0.00 3.95
159 160 2.046292 GATGGGGAGGAGAAGAGAAGG 58.954 57.143 0.00 0.00 0.00 3.46
160 161 1.686052 CGATGGGGAGGAGAAGAGAAG 59.314 57.143 0.00 0.00 0.00 2.85
161 162 1.689575 CCGATGGGGAGGAGAAGAGAA 60.690 57.143 0.00 0.00 38.47 2.87
162 163 0.105964 CCGATGGGGAGGAGAAGAGA 60.106 60.000 0.00 0.00 38.47 3.10
163 164 1.753368 GCCGATGGGGAGGAGAAGAG 61.753 65.000 0.00 0.00 38.47 2.85
212 220 2.125326 CGGCTCCCTCGTATCCACA 61.125 63.158 0.00 0.00 0.00 4.17
213 221 2.728817 CGGCTCCCTCGTATCCAC 59.271 66.667 0.00 0.00 0.00 4.02
214 222 2.520982 CCGGCTCCCTCGTATCCA 60.521 66.667 0.00 0.00 0.00 3.41
218 226 2.192443 CTCTCCGGCTCCCTCGTA 59.808 66.667 0.00 0.00 0.00 3.43
249 277 2.990674 CTACTGGCGCCGACAGATCG 62.991 65.000 29.54 10.23 42.14 3.69
262 290 2.579787 CTTCGCGGCGACTACTGG 60.580 66.667 26.40 7.35 34.89 4.00
263 291 2.579787 CCTTCGCGGCGACTACTG 60.580 66.667 26.40 12.26 34.89 2.74
436 482 3.680458 GGAGAAGAAAAGCTGAAGTACGG 59.320 47.826 0.00 0.00 0.00 4.02
500 570 1.751924 AGAGAGGAGCGTATTCACCAC 59.248 52.381 0.00 0.00 0.00 4.16
506 576 3.306472 AGGAGAAGAGAGGAGCGTATT 57.694 47.619 0.00 0.00 0.00 1.89
520 590 4.435137 TGAGGGGAAATGTAGAAGGAGAA 58.565 43.478 0.00 0.00 0.00 2.87
526 596 4.733077 TTGGTTGAGGGGAAATGTAGAA 57.267 40.909 0.00 0.00 0.00 2.10
545 615 3.117963 AGAGGAGAGGAGGCATGAAATTG 60.118 47.826 0.00 0.00 0.00 2.32
551 621 1.133388 AGAGAGAGGAGAGGAGGCATG 60.133 57.143 0.00 0.00 0.00 4.06
570 640 2.996621 GTGCTGCTTACCACTTACTCAG 59.003 50.000 0.00 0.00 0.00 3.35
572 642 3.320673 AGTGCTGCTTACCACTTACTC 57.679 47.619 0.00 0.00 39.11 2.59
573 643 3.576982 TGTAGTGCTGCTTACCACTTACT 59.423 43.478 0.00 0.00 42.02 2.24
574 644 3.921677 TGTAGTGCTGCTTACCACTTAC 58.078 45.455 0.00 0.00 42.02 2.34
576 650 3.007940 TCATGTAGTGCTGCTTACCACTT 59.992 43.478 0.00 0.00 42.02 3.16
588 662 5.643664 TGCAGATCAAAATTCATGTAGTGC 58.356 37.500 0.00 0.00 0.00 4.40
593 667 4.381612 CCAGCTGCAGATCAAAATTCATGT 60.382 41.667 20.43 0.00 0.00 3.21
603 677 0.035725 CAGAACCCAGCTGCAGATCA 60.036 55.000 20.43 0.00 0.00 2.92
623 697 7.521099 GCAAAACAGATGAGAACATTCAGAAGA 60.521 37.037 0.00 0.00 36.82 2.87
644 718 4.469657 AGGATTCAGTTACTGGTGCAAAA 58.530 39.130 12.79 0.00 31.51 2.44
667 741 5.229174 ACATCCTCTACTACTCCTACTCCT 58.771 45.833 0.00 0.00 0.00 3.69
669 743 6.484308 GTGAACATCCTCTACTACTCCTACTC 59.516 46.154 0.00 0.00 0.00 2.59
670 744 6.358991 GTGAACATCCTCTACTACTCCTACT 58.641 44.000 0.00 0.00 0.00 2.57
671 745 5.532032 GGTGAACATCCTCTACTACTCCTAC 59.468 48.000 0.00 0.00 0.00 3.18
672 746 5.432390 AGGTGAACATCCTCTACTACTCCTA 59.568 44.000 0.00 0.00 0.00 2.94
673 747 4.230964 AGGTGAACATCCTCTACTACTCCT 59.769 45.833 0.00 0.00 0.00 3.69
674 748 4.538738 AGGTGAACATCCTCTACTACTCC 58.461 47.826 0.00 0.00 0.00 3.85
675 749 5.419471 ACAAGGTGAACATCCTCTACTACTC 59.581 44.000 0.00 0.00 33.76 2.59
676 750 5.334421 ACAAGGTGAACATCCTCTACTACT 58.666 41.667 0.00 0.00 33.76 2.57
677 751 5.662674 ACAAGGTGAACATCCTCTACTAC 57.337 43.478 0.00 0.00 33.76 2.73
678 752 6.728411 TCTACAAGGTGAACATCCTCTACTA 58.272 40.000 0.00 0.00 33.76 1.82
679 753 5.580998 TCTACAAGGTGAACATCCTCTACT 58.419 41.667 0.00 0.00 33.76 2.57
680 754 5.916661 TCTACAAGGTGAACATCCTCTAC 57.083 43.478 0.00 0.00 33.76 2.59
681 755 8.783660 ATATTCTACAAGGTGAACATCCTCTA 57.216 34.615 0.00 0.00 33.76 2.43
682 756 7.682787 ATATTCTACAAGGTGAACATCCTCT 57.317 36.000 0.00 0.00 33.76 3.69
722 796 9.694137 GCACCTAGTTTAACCTACTATATCTTG 57.306 37.037 0.00 0.00 0.00 3.02
723 797 9.430399 TGCACCTAGTTTAACCTACTATATCTT 57.570 33.333 0.00 0.00 0.00 2.40
725 799 8.305317 CCTGCACCTAGTTTAACCTACTATATC 58.695 40.741 0.00 0.00 0.00 1.63
727 801 6.041296 GCCTGCACCTAGTTTAACCTACTATA 59.959 42.308 0.00 0.00 0.00 1.31
728 802 5.163332 GCCTGCACCTAGTTTAACCTACTAT 60.163 44.000 0.00 0.00 0.00 2.12
739 813 2.663196 GGTCGCCTGCACCTAGTT 59.337 61.111 0.00 0.00 0.00 2.24
753 827 3.191371 ACTGAAATCTGAAATTGGCGGTC 59.809 43.478 0.00 0.00 0.00 4.79
973 1107 0.675208 TGCATTTTCTTAGCGGCGGA 60.675 50.000 9.78 0.00 0.00 5.54
1083 1218 3.808618 GCCCCTATCATTCTGCTAACCAG 60.809 52.174 0.00 0.00 43.17 4.00
1573 1729 1.512156 GATTGGCAACGGTTGGTCGT 61.512 55.000 21.37 0.00 46.08 4.34
1678 1839 9.642343 AGAGTTTCCTGTAATTAAGAAAAAGGT 57.358 29.630 7.70 0.00 30.55 3.50
1858 2043 0.749454 GCCAAATGACCATCGGCTCT 60.749 55.000 13.20 0.00 39.73 4.09
1863 2048 1.262417 CAGATCGCCAAATGACCATCG 59.738 52.381 0.00 0.00 0.00 3.84
1891 2079 1.271001 TGCCATCAGTCCAGTGAAGTG 60.271 52.381 0.00 0.00 0.00 3.16
1901 2089 2.622942 TCCACTTGTTTTGCCATCAGTC 59.377 45.455 0.00 0.00 0.00 3.51
1914 2102 2.159142 ACTCTCGAACGTTTCCACTTGT 60.159 45.455 0.46 0.00 0.00 3.16
1918 2106 0.507358 GCACTCTCGAACGTTTCCAC 59.493 55.000 0.46 0.00 0.00 4.02
1925 2113 0.803768 CTCCATGGCACTCTCGAACG 60.804 60.000 6.96 0.00 0.00 3.95
1930 2118 0.179936 CCCTTCTCCATGGCACTCTC 59.820 60.000 6.96 0.00 0.00 3.20
2164 2352 4.133820 ACATCGACAACAACAATCCAAGA 58.866 39.130 0.00 0.00 0.00 3.02
2172 2360 4.162072 CACAACAAACATCGACAACAACA 58.838 39.130 0.00 0.00 0.00 3.33
2190 2378 1.755959 ACAAGCATGGCTCAAACACAA 59.244 42.857 0.00 0.00 38.25 3.33
2206 2394 4.398319 AGGGATACAACCAGAACAACAAG 58.602 43.478 0.00 0.00 39.74 3.16
2217 2405 2.486592 CCAACAAACGAGGGATACAACC 59.513 50.000 0.00 0.00 39.74 3.77
2226 2414 1.134175 AGCACAAACCAACAAACGAGG 59.866 47.619 0.00 0.00 0.00 4.63
2228 2416 1.813178 TGAGCACAAACCAACAAACGA 59.187 42.857 0.00 0.00 0.00 3.85
2244 2432 2.614229 GGTCTCCACTTCTCCTTTGAGC 60.614 54.545 0.00 0.00 38.58 4.26
2272 2460 8.703336 CACGATATAAATACACACATGAAGAGG 58.297 37.037 0.00 0.00 0.00 3.69
2293 2481 6.677781 ATTTCAAACCAATACGATCACGAT 57.322 33.333 0.00 0.00 42.66 3.73
2301 2489 3.181545 GCGCACAATTTCAAACCAATACG 60.182 43.478 0.30 0.00 0.00 3.06
2318 2506 0.503961 GAAATTGCACAACAGCGCAC 59.496 50.000 11.47 0.00 38.00 5.34
2352 2540 1.273327 CCCCCAGTTGTGATTTTCTGC 59.727 52.381 0.00 0.00 0.00 4.26
2360 2548 0.401395 AGGAGTTCCCCCAGTTGTGA 60.401 55.000 0.00 0.00 36.42 3.58
3079 3267 2.502947 TCTCTGTGGAGGATGTCATTGG 59.497 50.000 0.00 0.00 39.86 3.16
3080 3268 3.900966 TCTCTGTGGAGGATGTCATTG 57.099 47.619 0.00 0.00 39.86 2.82
3081 3269 5.045359 TGAATTCTCTGTGGAGGATGTCATT 60.045 40.000 7.05 0.00 37.81 2.57
3082 3270 4.472470 TGAATTCTCTGTGGAGGATGTCAT 59.528 41.667 7.05 0.00 37.81 3.06
3083 3271 3.840078 TGAATTCTCTGTGGAGGATGTCA 59.160 43.478 7.05 0.00 37.81 3.58
3084 3272 4.187694 GTGAATTCTCTGTGGAGGATGTC 58.812 47.826 7.05 0.00 37.81 3.06
3085 3273 3.368843 CGTGAATTCTCTGTGGAGGATGT 60.369 47.826 7.05 0.00 37.81 3.06
3086 3274 3.193263 CGTGAATTCTCTGTGGAGGATG 58.807 50.000 7.05 0.00 37.81 3.51
3087 3275 2.419297 GCGTGAATTCTCTGTGGAGGAT 60.419 50.000 7.05 0.00 39.36 3.24
3088 3276 1.066858 GCGTGAATTCTCTGTGGAGGA 60.067 52.381 7.05 0.00 39.86 3.71
3089 3277 1.363744 GCGTGAATTCTCTGTGGAGG 58.636 55.000 7.05 0.00 39.86 4.30
3090 3278 1.066573 AGGCGTGAATTCTCTGTGGAG 60.067 52.381 7.05 0.00 40.73 3.86
3091 3279 0.976641 AGGCGTGAATTCTCTGTGGA 59.023 50.000 7.05 0.00 0.00 4.02
3092 3280 1.066573 AGAGGCGTGAATTCTCTGTGG 60.067 52.381 7.05 0.00 36.61 4.17
3093 3281 1.998315 CAGAGGCGTGAATTCTCTGTG 59.002 52.381 7.05 4.62 45.50 3.66
3094 3282 2.376808 CAGAGGCGTGAATTCTCTGT 57.623 50.000 7.05 0.00 45.50 3.41
3096 3284 2.499289 ACATCAGAGGCGTGAATTCTCT 59.501 45.455 7.05 0.00 38.29 3.10
3097 3285 2.898705 ACATCAGAGGCGTGAATTCTC 58.101 47.619 7.05 1.90 0.00 2.87
3098 3286 3.340814 AACATCAGAGGCGTGAATTCT 57.659 42.857 7.05 0.00 0.00 2.40
3099 3287 3.436704 TGAAACATCAGAGGCGTGAATTC 59.563 43.478 0.00 0.00 0.00 2.17
3100 3288 3.411446 TGAAACATCAGAGGCGTGAATT 58.589 40.909 0.00 0.00 0.00 2.17
3101 3289 3.005554 CTGAAACATCAGAGGCGTGAAT 58.994 45.455 0.00 0.00 39.99 2.57
3102 3290 2.037121 TCTGAAACATCAGAGGCGTGAA 59.963 45.455 4.49 0.00 41.34 3.18
3103 3291 1.618343 TCTGAAACATCAGAGGCGTGA 59.382 47.619 4.49 0.00 41.34 4.35
3104 3292 2.084610 TCTGAAACATCAGAGGCGTG 57.915 50.000 4.49 0.00 41.34 5.34
3110 3298 2.550855 GCCACCACTCTGAAACATCAGA 60.551 50.000 8.16 8.16 43.68 3.27
3111 3299 1.808945 GCCACCACTCTGAAACATCAG 59.191 52.381 0.00 0.00 39.00 2.90
3112 3300 1.142667 TGCCACCACTCTGAAACATCA 59.857 47.619 0.00 0.00 0.00 3.07
3113 3301 1.896220 TGCCACCACTCTGAAACATC 58.104 50.000 0.00 0.00 0.00 3.06
3114 3302 2.363306 TTGCCACCACTCTGAAACAT 57.637 45.000 0.00 0.00 0.00 2.71
3115 3303 2.023673 CTTTGCCACCACTCTGAAACA 58.976 47.619 0.00 0.00 0.00 2.83
3116 3304 2.024414 ACTTTGCCACCACTCTGAAAC 58.976 47.619 0.00 0.00 0.00 2.78
3117 3305 2.435372 ACTTTGCCACCACTCTGAAA 57.565 45.000 0.00 0.00 0.00 2.69
3118 3306 2.297701 GAACTTTGCCACCACTCTGAA 58.702 47.619 0.00 0.00 0.00 3.02
3119 3307 1.476833 GGAACTTTGCCACCACTCTGA 60.477 52.381 0.00 0.00 0.00 3.27
3120 3308 0.954452 GGAACTTTGCCACCACTCTG 59.046 55.000 0.00 0.00 0.00 3.35
3121 3309 0.846693 AGGAACTTTGCCACCACTCT 59.153 50.000 0.00 0.00 27.25 3.24
3122 3310 3.421567 AGGAACTTTGCCACCACTC 57.578 52.632 0.00 0.00 27.25 3.51
3137 3325 3.136641 AGCTCCCTAATTCCTGAAGGA 57.863 47.619 0.00 0.00 43.73 3.36
3138 3326 3.941704 AAGCTCCCTAATTCCTGAAGG 57.058 47.619 0.00 0.00 0.00 3.46
3139 3327 4.384940 GCTAAGCTCCCTAATTCCTGAAG 58.615 47.826 0.00 0.00 0.00 3.02
3140 3328 3.181465 CGCTAAGCTCCCTAATTCCTGAA 60.181 47.826 0.00 0.00 0.00 3.02
3141 3329 2.365617 CGCTAAGCTCCCTAATTCCTGA 59.634 50.000 0.00 0.00 0.00 3.86
3142 3330 2.365617 TCGCTAAGCTCCCTAATTCCTG 59.634 50.000 0.00 0.00 0.00 3.86
3143 3331 2.679082 TCGCTAAGCTCCCTAATTCCT 58.321 47.619 0.00 0.00 0.00 3.36
3144 3332 3.686916 ATCGCTAAGCTCCCTAATTCC 57.313 47.619 0.00 0.00 0.00 3.01
3145 3333 5.064071 GCATAATCGCTAAGCTCCCTAATTC 59.936 44.000 0.00 0.00 0.00 2.17
3146 3334 4.938226 GCATAATCGCTAAGCTCCCTAATT 59.062 41.667 0.00 0.00 0.00 1.40
3147 3335 4.020218 TGCATAATCGCTAAGCTCCCTAAT 60.020 41.667 0.00 0.00 0.00 1.73
3148 3336 3.323691 TGCATAATCGCTAAGCTCCCTAA 59.676 43.478 0.00 0.00 0.00 2.69
3149 3337 2.897326 TGCATAATCGCTAAGCTCCCTA 59.103 45.455 0.00 0.00 0.00 3.53
3150 3338 1.694150 TGCATAATCGCTAAGCTCCCT 59.306 47.619 0.00 0.00 0.00 4.20
3151 3339 2.072298 CTGCATAATCGCTAAGCTCCC 58.928 52.381 0.00 0.00 0.00 4.30
3152 3340 1.462670 GCTGCATAATCGCTAAGCTCC 59.537 52.381 0.00 0.00 30.43 4.70
3153 3341 1.462670 GGCTGCATAATCGCTAAGCTC 59.537 52.381 0.50 0.00 32.89 4.09
3154 3342 1.517242 GGCTGCATAATCGCTAAGCT 58.483 50.000 0.50 0.00 32.89 3.74
3155 3343 0.519077 GGGCTGCATAATCGCTAAGC 59.481 55.000 0.50 0.00 31.84 3.09
3156 3344 0.792640 CGGGCTGCATAATCGCTAAG 59.207 55.000 0.50 0.00 0.00 2.18
3157 3345 1.227999 GCGGGCTGCATAATCGCTAA 61.228 55.000 14.74 0.00 45.45 3.09
3158 3346 1.667830 GCGGGCTGCATAATCGCTA 60.668 57.895 14.74 0.00 45.45 4.26
3159 3347 2.974698 GCGGGCTGCATAATCGCT 60.975 61.111 14.74 0.00 45.45 4.93
3160 3348 4.374702 CGCGGGCTGCATAATCGC 62.375 66.667 19.92 4.69 46.97 4.58
3161 3349 2.661537 TCGCGGGCTGCATAATCG 60.662 61.111 19.92 0.16 46.97 3.34
3162 3350 1.436195 TTGTCGCGGGCTGCATAATC 61.436 55.000 19.92 3.87 46.97 1.75
3163 3351 1.029408 TTTGTCGCGGGCTGCATAAT 61.029 50.000 19.92 0.00 46.97 1.28
3164 3352 1.672682 TTTGTCGCGGGCTGCATAA 60.673 52.632 19.92 6.94 46.97 1.90
3165 3353 2.046796 TTTGTCGCGGGCTGCATA 60.047 55.556 19.92 2.21 46.97 3.14
3166 3354 3.737172 GTTTGTCGCGGGCTGCAT 61.737 61.111 19.92 0.00 46.97 3.96
3167 3355 4.927782 AGTTTGTCGCGGGCTGCA 62.928 61.111 19.92 2.50 46.97 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.