Multiple sequence alignment - TraesCS7A01G010900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G010900 chr7A 100.000 2481 0 0 1 2481 4900130 4897650 0.000000e+00 4582.0
1 TraesCS7A01G010900 chr7A 83.573 487 50 18 1483 1963 5614368 5613906 2.010000e-116 429.0
2 TraesCS7A01G010900 chr7A 83.004 506 49 18 1482 1961 6303494 6303000 9.330000e-115 424.0
3 TraesCS7A01G010900 chr7A 86.375 389 42 10 1506 1889 6132747 6132365 5.620000e-112 414.0
4 TraesCS7A01G010900 chr7A 85.625 320 27 10 1482 1783 6279983 6279665 4.530000e-83 318.0
5 TraesCS7A01G010900 chr7A 93.204 103 7 0 999 1101 6303976 6303874 4.860000e-33 152.0
6 TraesCS7A01G010900 chr7A 93.333 45 3 0 1375 1419 183911394 183911350 1.810000e-07 67.6
7 TraesCS7A01G010900 chr7A 100.000 30 0 0 2789 2818 4897342 4897313 3.920000e-04 56.5
8 TraesCS7A01G010900 chr4A 91.063 1007 42 26 1506 2481 738746788 738747777 0.000000e+00 1317.0
9 TraesCS7A01G010900 chr4A 86.792 212 14 7 996 1201 738746364 738746567 1.020000e-54 224.0
10 TraesCS7A01G010900 chr4A 79.897 194 12 13 256 432 738745543 738745726 1.770000e-22 117.0
11 TraesCS7A01G010900 chr4A 100.000 42 0 0 1366 1407 82849227 82849186 8.370000e-11 78.7
12 TraesCS7A01G010900 chr4A 90.385 52 5 0 535 586 738745852 738745903 5.040000e-08 69.4
13 TraesCS7A01G010900 chr4A 100.000 30 0 0 2789 2818 738747854 738747883 3.920000e-04 56.5
14 TraesCS7A01G010900 chr7D 90.326 982 39 25 1515 2481 4995804 4994864 0.000000e+00 1236.0
15 TraesCS7A01G010900 chr7D 87.105 411 39 10 1482 1889 5034906 5034507 1.190000e-123 453.0
16 TraesCS7A01G010900 chr7D 86.269 386 34 10 1482 1849 5036308 5035924 4.370000e-108 401.0
17 TraesCS7A01G010900 chr7D 84.477 277 20 13 950 1210 4996248 4995979 4.660000e-63 252.0
18 TraesCS7A01G010900 chr7D 92.233 103 8 0 999 1101 5036754 5036652 2.260000e-31 147.0
19 TraesCS7A01G010900 chr7D 81.690 142 12 8 1420 1557 5035241 5035110 3.840000e-19 106.0
20 TraesCS7A01G010900 chr7D 95.556 45 1 1 1918 1961 5035886 5035842 1.400000e-08 71.3
21 TraesCS7A01G010900 chr5A 89.189 74 6 2 1336 1407 677129730 677129657 1.080000e-14 91.6
22 TraesCS7A01G010900 chr2A 100.000 43 0 0 1366 1408 31043362 31043404 2.330000e-11 80.5
23 TraesCS7A01G010900 chr5B 100.000 42 0 0 1366 1407 689995141 689995100 8.370000e-11 78.7
24 TraesCS7A01G010900 chr1B 100.000 42 0 0 1366 1407 662158822 662158863 8.370000e-11 78.7
25 TraesCS7A01G010900 chr1B 100.000 42 0 0 1366 1407 662161375 662161416 8.370000e-11 78.7
26 TraesCS7A01G010900 chr1A 100.000 42 0 0 1366 1407 527694900 527694941 8.370000e-11 78.7
27 TraesCS7A01G010900 chr3D 87.500 72 2 1 1339 1410 199243801 199243737 3.010000e-10 76.8
28 TraesCS7A01G010900 chr3D 95.455 44 2 0 1366 1409 556143628 556143671 1.400000e-08 71.3
29 TraesCS7A01G010900 chr3D 83.824 68 2 1 1330 1388 116015577 116015510 3.920000e-04 56.5
30 TraesCS7A01G010900 chr2B 95.745 47 1 1 1366 1411 18809654 18809700 1.080000e-09 75.0
31 TraesCS7A01G010900 chr5D 95.652 46 1 1 1366 1411 231356320 231356364 3.890000e-09 73.1
32 TraesCS7A01G010900 chr4B 92.308 52 3 1 1360 1410 418344900 418344951 3.890000e-09 73.1
33 TraesCS7A01G010900 chr3B 95.455 44 2 0 1366 1409 739125842 739125885 1.400000e-08 71.3
34 TraesCS7A01G010900 chr3A 95.455 44 2 0 1366 1409 35768078 35768035 1.400000e-08 71.3
35 TraesCS7A01G010900 chr3A 93.333 45 3 0 1366 1410 108468005 108467961 1.810000e-07 67.6
36 TraesCS7A01G010900 chr1D 96.774 31 1 0 1336 1366 112471934 112471964 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G010900 chr7A 4897313 4900130 2817 True 2319.25 4582 100.0000 1 2818 2 chr7A.!!$R5 2817
1 TraesCS7A01G010900 chr7A 6303000 6303976 976 True 288.00 424 88.1040 999 1961 2 chr7A.!!$R6 962
2 TraesCS7A01G010900 chr4A 738745543 738747883 2340 False 356.78 1317 89.6274 256 2818 5 chr4A.!!$F1 2562
3 TraesCS7A01G010900 chr7D 4994864 4996248 1384 True 744.00 1236 87.4015 950 2481 2 chr7D.!!$R1 1531
4 TraesCS7A01G010900 chr7D 5034507 5036754 2247 True 235.66 453 88.5706 999 1961 5 chr7D.!!$R2 962

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 135 0.035317 TCCTTGCACGAGAAGCACAT 59.965 50.0 0.0 0.0 42.54 3.21 F
348 353 0.039798 CGACGGACGGACAGAAGAAA 60.040 55.0 0.0 0.0 38.46 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1453 1719 0.250234 TACATGTGACAGCCTCCTGC 59.750 55.0 9.11 0.0 43.02 4.85 R
2007 3735 0.251297 TGGCTCCCACACAAATGAGG 60.251 55.0 0.00 0.0 36.39 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.975663 ATCATGATCTTTTCATAAGAGAAGCA 57.024 30.769 1.18 0.00 43.40 3.91
33 34 8.206325 TCATGATCTTTTCATAAGAGAAGCAC 57.794 34.615 0.00 0.00 43.40 4.40
34 35 7.825761 TCATGATCTTTTCATAAGAGAAGCACA 59.174 33.333 0.00 0.00 43.40 4.57
35 36 7.984422 TGATCTTTTCATAAGAGAAGCACAA 57.016 32.000 0.00 0.00 36.27 3.33
36 37 8.394971 TGATCTTTTCATAAGAGAAGCACAAA 57.605 30.769 0.00 0.00 36.27 2.83
37 38 9.017509 TGATCTTTTCATAAGAGAAGCACAAAT 57.982 29.630 0.00 0.00 36.27 2.32
38 39 9.852091 GATCTTTTCATAAGAGAAGCACAAATT 57.148 29.630 0.00 0.00 36.27 1.82
40 41 9.467258 TCTTTTCATAAGAGAAGCACAAATTTG 57.533 29.630 16.67 16.67 36.27 2.32
41 42 9.252962 CTTTTCATAAGAGAAGCACAAATTTGT 57.747 29.630 18.13 18.13 33.05 2.83
42 43 9.598517 TTTTCATAAGAGAAGCACAAATTTGTT 57.401 25.926 21.10 7.41 39.91 2.83
43 44 9.598517 TTTCATAAGAGAAGCACAAATTTGTTT 57.401 25.926 21.10 13.92 39.91 2.83
44 45 8.801715 TCATAAGAGAAGCACAAATTTGTTTC 57.198 30.769 21.10 20.89 39.91 2.78
45 46 8.632679 TCATAAGAGAAGCACAAATTTGTTTCT 58.367 29.630 26.95 26.95 39.60 2.52
46 47 8.697067 CATAAGAGAAGCACAAATTTGTTTCTG 58.303 33.333 29.75 18.11 37.99 3.02
47 48 6.212888 AGAGAAGCACAAATTTGTTTCTGT 57.787 33.333 29.75 25.42 37.99 3.41
48 49 6.038356 AGAGAAGCACAAATTTGTTTCTGTG 58.962 36.000 29.75 18.01 37.99 3.66
49 50 5.964758 AGAAGCACAAATTTGTTTCTGTGA 58.035 33.333 26.41 0.00 41.35 3.58
50 51 6.038356 AGAAGCACAAATTTGTTTCTGTGAG 58.962 36.000 26.41 14.13 41.35 3.51
51 52 5.581126 AGCACAAATTTGTTTCTGTGAGA 57.419 34.783 21.10 0.00 41.35 3.27
52 53 5.964758 AGCACAAATTTGTTTCTGTGAGAA 58.035 33.333 21.10 0.00 41.35 2.87
53 54 6.038356 AGCACAAATTTGTTTCTGTGAGAAG 58.962 36.000 21.10 6.78 41.35 2.85
54 55 5.276536 GCACAAATTTGTTTCTGTGAGAAGC 60.277 40.000 21.10 12.61 41.35 3.86
55 56 5.806502 CACAAATTTGTTTCTGTGAGAAGCA 59.193 36.000 21.10 0.00 42.40 3.91
56 57 5.807011 ACAAATTTGTTTCTGTGAGAAGCAC 59.193 36.000 18.13 0.00 43.49 4.40
57 58 6.572119 ACAAATTTGTTTCTGTGAGAAGCACA 60.572 34.615 18.13 0.00 46.59 4.57
64 65 2.690326 GTGAGAAGCACAACCGTGT 58.310 52.632 0.00 0.00 46.91 4.49
65 66 1.014352 GTGAGAAGCACAACCGTGTT 58.986 50.000 0.00 0.00 46.91 3.32
70 71 2.559998 AAGCACAACCGTGTTTCTTG 57.440 45.000 0.00 0.00 42.19 3.02
71 72 0.738389 AGCACAACCGTGTTTCTTGG 59.262 50.000 0.00 0.00 45.50 3.61
72 73 0.736053 GCACAACCGTGTTTCTTGGA 59.264 50.000 0.00 0.00 45.50 3.53
73 74 1.133407 GCACAACCGTGTTTCTTGGAA 59.867 47.619 0.00 0.00 45.50 3.53
74 75 2.416162 GCACAACCGTGTTTCTTGGAAA 60.416 45.455 0.00 0.00 45.50 3.13
75 76 3.839293 CACAACCGTGTTTCTTGGAAAA 58.161 40.909 0.00 0.00 38.41 2.29
76 77 3.857093 CACAACCGTGTTTCTTGGAAAAG 59.143 43.478 0.00 0.00 38.41 2.27
77 78 3.119280 ACAACCGTGTTTCTTGGAAAAGG 60.119 43.478 0.00 0.00 32.58 3.11
78 79 3.007473 ACCGTGTTTCTTGGAAAAGGA 57.993 42.857 13.29 0.00 0.00 3.36
79 80 3.358118 ACCGTGTTTCTTGGAAAAGGAA 58.642 40.909 13.29 0.00 0.00 3.36
80 81 3.764972 ACCGTGTTTCTTGGAAAAGGAAA 59.235 39.130 13.29 0.00 0.00 3.13
81 82 4.221041 ACCGTGTTTCTTGGAAAAGGAAAA 59.779 37.500 13.29 0.00 32.00 2.29
82 83 5.172205 CCGTGTTTCTTGGAAAAGGAAAAA 58.828 37.500 0.00 0.00 32.00 1.94
130 131 2.774439 TTTTTCCTTGCACGAGAAGC 57.226 45.000 0.00 0.00 0.00 3.86
131 132 1.674359 TTTTCCTTGCACGAGAAGCA 58.326 45.000 0.00 0.00 40.85 3.91
132 133 0.944386 TTTCCTTGCACGAGAAGCAC 59.056 50.000 0.00 0.00 42.54 4.40
133 134 0.179059 TTCCTTGCACGAGAAGCACA 60.179 50.000 0.00 0.00 42.54 4.57
134 135 0.035317 TCCTTGCACGAGAAGCACAT 59.965 50.000 0.00 0.00 42.54 3.21
135 136 1.275010 TCCTTGCACGAGAAGCACATA 59.725 47.619 0.00 0.00 42.54 2.29
136 137 2.093500 TCCTTGCACGAGAAGCACATAT 60.093 45.455 0.00 0.00 42.54 1.78
137 138 2.679837 CCTTGCACGAGAAGCACATATT 59.320 45.455 0.00 0.00 42.54 1.28
138 139 3.127548 CCTTGCACGAGAAGCACATATTT 59.872 43.478 0.00 0.00 42.54 1.40
139 140 3.745332 TGCACGAGAAGCACATATTTG 57.255 42.857 0.00 0.00 37.02 2.32
140 141 3.333804 TGCACGAGAAGCACATATTTGA 58.666 40.909 0.00 0.00 37.02 2.69
141 142 3.371898 TGCACGAGAAGCACATATTTGAG 59.628 43.478 0.00 0.00 37.02 3.02
142 143 3.618594 GCACGAGAAGCACATATTTGAGA 59.381 43.478 0.00 0.00 0.00 3.27
143 144 4.093408 GCACGAGAAGCACATATTTGAGAA 59.907 41.667 0.00 0.00 0.00 2.87
144 145 5.220739 GCACGAGAAGCACATATTTGAGAAT 60.221 40.000 0.00 0.00 0.00 2.40
145 146 6.417327 CACGAGAAGCACATATTTGAGAATC 58.583 40.000 0.00 0.00 0.00 2.52
162 163 6.969366 TGAGAATCACCATTAACAACAAGTG 58.031 36.000 0.00 0.00 42.56 3.16
163 164 6.770303 TGAGAATCACCATTAACAACAAGTGA 59.230 34.615 0.00 0.00 42.56 3.41
164 165 7.448161 TGAGAATCACCATTAACAACAAGTGAT 59.552 33.333 0.00 0.00 42.56 3.06
168 169 8.592105 ATCACCATTAACAACAAGTGATTTTG 57.408 30.769 0.00 0.00 40.98 2.44
169 170 6.478344 TCACCATTAACAACAAGTGATTTTGC 59.522 34.615 0.00 0.00 29.75 3.68
170 171 6.257411 CACCATTAACAACAAGTGATTTTGCA 59.743 34.615 0.00 0.00 0.00 4.08
171 172 6.991531 ACCATTAACAACAAGTGATTTTGCAT 59.008 30.769 0.00 0.00 0.00 3.96
172 173 8.147058 ACCATTAACAACAAGTGATTTTGCATA 58.853 29.630 0.00 0.00 0.00 3.14
173 174 9.153721 CCATTAACAACAAGTGATTTTGCATAT 57.846 29.630 0.00 0.00 0.00 1.78
177 178 7.656707 ACAACAAGTGATTTTGCATATTTCC 57.343 32.000 0.00 0.00 0.00 3.13
178 179 7.444299 ACAACAAGTGATTTTGCATATTTCCT 58.556 30.769 0.00 0.00 0.00 3.36
179 180 7.933033 ACAACAAGTGATTTTGCATATTTCCTT 59.067 29.630 0.00 0.00 0.00 3.36
180 181 8.776470 CAACAAGTGATTTTGCATATTTCCTTT 58.224 29.630 0.00 0.00 0.00 3.11
181 182 8.907222 ACAAGTGATTTTGCATATTTCCTTTT 57.093 26.923 0.00 0.00 0.00 2.27
182 183 9.341078 ACAAGTGATTTTGCATATTTCCTTTTT 57.659 25.926 0.00 0.00 0.00 1.94
207 208 8.537049 TTTTGAGACATTTTGCATATTTCCTG 57.463 30.769 0.00 0.00 0.00 3.86
208 209 7.465353 TTGAGACATTTTGCATATTTCCTGA 57.535 32.000 0.00 0.00 0.00 3.86
209 210 7.092137 TGAGACATTTTGCATATTTCCTGAG 57.908 36.000 0.00 0.00 0.00 3.35
210 211 6.885918 TGAGACATTTTGCATATTTCCTGAGA 59.114 34.615 0.00 0.00 0.00 3.27
211 212 7.394077 TGAGACATTTTGCATATTTCCTGAGAA 59.606 33.333 0.00 0.00 0.00 2.87
212 213 7.769220 AGACATTTTGCATATTTCCTGAGAAG 58.231 34.615 0.00 0.00 32.35 2.85
213 214 6.870769 ACATTTTGCATATTTCCTGAGAAGG 58.129 36.000 0.00 0.00 32.35 3.46
214 215 5.920193 TTTTGCATATTTCCTGAGAAGGG 57.080 39.130 0.00 0.00 32.35 3.95
215 216 3.582998 TGCATATTTCCTGAGAAGGGG 57.417 47.619 0.00 0.00 32.35 4.79
216 217 3.122480 TGCATATTTCCTGAGAAGGGGA 58.878 45.455 0.00 0.00 32.35 4.81
217 218 3.137176 TGCATATTTCCTGAGAAGGGGAG 59.863 47.826 0.00 0.00 32.35 4.30
218 219 3.137360 GCATATTTCCTGAGAAGGGGAGT 59.863 47.826 0.00 0.00 32.35 3.85
219 220 4.712476 CATATTTCCTGAGAAGGGGAGTG 58.288 47.826 0.00 0.00 32.35 3.51
220 221 1.362224 TTTCCTGAGAAGGGGAGTGG 58.638 55.000 0.00 0.00 32.35 4.00
221 222 0.193574 TTCCTGAGAAGGGGAGTGGT 59.806 55.000 0.00 0.00 32.80 4.16
222 223 0.252284 TCCTGAGAAGGGGAGTGGTC 60.252 60.000 0.00 0.00 0.00 4.02
223 224 1.268283 CCTGAGAAGGGGAGTGGTCC 61.268 65.000 0.00 0.00 43.05 4.46
232 233 3.403558 GAGTGGTCCCAGCCCCTC 61.404 72.222 0.00 0.00 0.00 4.30
233 234 4.270153 AGTGGTCCCAGCCCCTCA 62.270 66.667 0.00 0.00 0.00 3.86
234 235 4.035102 GTGGTCCCAGCCCCTCAC 62.035 72.222 0.00 0.00 0.00 3.51
237 238 4.083862 GTCCCAGCCCCTCACGTC 62.084 72.222 0.00 0.00 0.00 4.34
238 239 4.316823 TCCCAGCCCCTCACGTCT 62.317 66.667 0.00 0.00 0.00 4.18
239 240 3.775654 CCCAGCCCCTCACGTCTC 61.776 72.222 0.00 0.00 0.00 3.36
240 241 4.135153 CCAGCCCCTCACGTCTCG 62.135 72.222 0.00 0.00 0.00 4.04
241 242 3.374402 CAGCCCCTCACGTCTCGT 61.374 66.667 0.00 0.00 42.36 4.18
242 243 2.600769 AGCCCCTCACGTCTCGTT 60.601 61.111 0.00 0.00 38.32 3.85
243 244 2.207924 AGCCCCTCACGTCTCGTTT 61.208 57.895 0.00 0.00 38.32 3.60
244 245 1.737008 GCCCCTCACGTCTCGTTTC 60.737 63.158 0.00 0.00 38.32 2.78
245 246 1.965219 CCCCTCACGTCTCGTTTCT 59.035 57.895 0.00 0.00 38.32 2.52
246 247 0.317479 CCCCTCACGTCTCGTTTCTT 59.683 55.000 0.00 0.00 38.32 2.52
247 248 1.669211 CCCCTCACGTCTCGTTTCTTC 60.669 57.143 0.00 0.00 38.32 2.87
248 249 1.269998 CCCTCACGTCTCGTTTCTTCT 59.730 52.381 0.00 0.00 38.32 2.85
249 250 2.586900 CCTCACGTCTCGTTTCTTCTC 58.413 52.381 0.00 0.00 38.32 2.87
250 251 2.586900 CTCACGTCTCGTTTCTTCTCC 58.413 52.381 0.00 0.00 38.32 3.71
251 252 1.268899 TCACGTCTCGTTTCTTCTCCC 59.731 52.381 0.00 0.00 38.32 4.30
252 253 0.602060 ACGTCTCGTTTCTTCTCCCC 59.398 55.000 0.00 0.00 36.35 4.81
253 254 0.456312 CGTCTCGTTTCTTCTCCCCG 60.456 60.000 0.00 0.00 0.00 5.73
254 255 0.736672 GTCTCGTTTCTTCTCCCCGC 60.737 60.000 0.00 0.00 0.00 6.13
259 260 1.911766 TTTCTTCTCCCCGCCGTCT 60.912 57.895 0.00 0.00 0.00 4.18
262 263 2.283676 TTCTCCCCGCCGTCTTCT 60.284 61.111 0.00 0.00 0.00 2.85
267 268 1.003718 CCCCGCCGTCTTCTTCTTT 60.004 57.895 0.00 0.00 0.00 2.52
272 273 2.548480 CCGCCGTCTTCTTCTTTTTCTT 59.452 45.455 0.00 0.00 0.00 2.52
273 274 3.364068 CCGCCGTCTTCTTCTTTTTCTTC 60.364 47.826 0.00 0.00 0.00 2.87
341 346 1.371337 AATCGATCGACGGACGGACA 61.371 55.000 22.06 0.00 42.82 4.02
348 353 0.039798 CGACGGACGGACAGAAGAAA 60.040 55.000 0.00 0.00 38.46 2.52
349 354 1.416373 GACGGACGGACAGAAGAAAC 58.584 55.000 0.00 0.00 0.00 2.78
372 387 2.016318 CATGGCGATTTGGTTCTAGCA 58.984 47.619 0.00 0.00 0.00 3.49
373 388 2.192664 TGGCGATTTGGTTCTAGCAA 57.807 45.000 0.00 0.00 33.27 3.91
374 389 2.083774 TGGCGATTTGGTTCTAGCAAG 58.916 47.619 0.00 0.00 36.89 4.01
375 390 1.202188 GGCGATTTGGTTCTAGCAAGC 60.202 52.381 0.00 0.00 36.89 4.01
376 391 1.740025 GCGATTTGGTTCTAGCAAGCT 59.260 47.619 0.00 0.00 36.89 3.74
377 392 2.936498 GCGATTTGGTTCTAGCAAGCTA 59.064 45.455 1.37 1.37 36.89 3.32
378 393 3.001736 GCGATTTGGTTCTAGCAAGCTAG 59.998 47.826 20.32 20.32 45.38 3.42
379 394 3.557595 CGATTTGGTTCTAGCAAGCTAGG 59.442 47.826 24.40 9.83 44.45 3.02
380 395 4.518249 GATTTGGTTCTAGCAAGCTAGGT 58.482 43.478 24.40 0.00 44.45 3.08
381 396 3.611766 TTGGTTCTAGCAAGCTAGGTC 57.388 47.619 24.40 17.74 44.45 3.85
382 397 2.821437 TGGTTCTAGCAAGCTAGGTCT 58.179 47.619 24.40 0.00 44.45 3.85
383 398 3.173965 TGGTTCTAGCAAGCTAGGTCTT 58.826 45.455 24.40 0.00 44.45 3.01
384 399 3.195825 TGGTTCTAGCAAGCTAGGTCTTC 59.804 47.826 24.40 12.80 44.45 2.87
387 402 1.414550 CTAGCAAGCTAGGTCTTCCCC 59.585 57.143 18.97 0.00 41.58 4.81
413 428 4.137543 CGATTATTCCCCTTCCTTCCTTG 58.862 47.826 0.00 0.00 0.00 3.61
420 435 1.377333 CTTCCTTCCTTGTCGCCCC 60.377 63.158 0.00 0.00 0.00 5.80
422 437 3.646715 CCTTCCTTGTCGCCCCCA 61.647 66.667 0.00 0.00 0.00 4.96
435 453 3.797353 CCCCACCGGCTGCTACAT 61.797 66.667 0.00 0.00 0.00 2.29
436 454 2.203070 CCCACCGGCTGCTACATC 60.203 66.667 0.00 0.00 0.00 3.06
437 455 2.586079 CCACCGGCTGCTACATCG 60.586 66.667 0.00 0.00 0.00 3.84
438 456 2.494445 CACCGGCTGCTACATCGA 59.506 61.111 0.00 0.00 0.00 3.59
440 458 2.348104 ACCGGCTGCTACATCGACA 61.348 57.895 0.00 0.00 0.00 4.35
441 459 1.589993 CCGGCTGCTACATCGACAG 60.590 63.158 0.00 0.00 34.48 3.51
443 461 0.593518 CGGCTGCTACATCGACAGAG 60.594 60.000 4.30 0.00 33.10 3.35
445 463 0.873743 GCTGCTACATCGACAGAGCC 60.874 60.000 10.73 0.00 33.87 4.70
446 464 0.743688 CTGCTACATCGACAGAGCCT 59.256 55.000 10.73 0.00 33.87 4.58
447 465 1.135915 CTGCTACATCGACAGAGCCTT 59.864 52.381 10.73 0.00 33.87 4.35
448 466 1.135139 TGCTACATCGACAGAGCCTTC 59.865 52.381 10.73 0.00 33.87 3.46
449 467 1.537135 GCTACATCGACAGAGCCTTCC 60.537 57.143 3.46 0.00 0.00 3.46
450 468 2.028130 CTACATCGACAGAGCCTTCCT 58.972 52.381 0.00 0.00 0.00 3.36
452 470 0.809241 CATCGACAGAGCCTTCCTGC 60.809 60.000 0.00 0.00 35.14 4.85
453 471 2.290122 ATCGACAGAGCCTTCCTGCG 62.290 60.000 0.00 0.00 35.14 5.18
454 472 2.973899 GACAGAGCCTTCCTGCGA 59.026 61.111 0.00 0.00 35.14 5.10
455 473 1.446966 GACAGAGCCTTCCTGCGAC 60.447 63.158 0.00 0.00 35.14 5.19
456 474 1.882989 GACAGAGCCTTCCTGCGACT 61.883 60.000 0.00 0.00 35.14 4.18
457 475 1.294780 CAGAGCCTTCCTGCGACTT 59.705 57.895 0.00 0.00 36.02 3.01
458 476 0.739112 CAGAGCCTTCCTGCGACTTC 60.739 60.000 0.00 0.00 36.02 3.01
460 478 2.436824 GCCTTCCTGCGACTTCCC 60.437 66.667 0.00 0.00 0.00 3.97
461 479 2.125512 CCTTCCTGCGACTTCCCG 60.126 66.667 0.00 0.00 0.00 5.14
462 480 2.125512 CTTCCTGCGACTTCCCGG 60.126 66.667 0.00 0.00 0.00 5.73
463 481 4.388499 TTCCTGCGACTTCCCGGC 62.388 66.667 0.00 0.00 0.00 6.13
488 506 2.711311 CATCCAATCTGCACGCCG 59.289 61.111 0.00 0.00 0.00 6.46
489 507 1.815003 CATCCAATCTGCACGCCGA 60.815 57.895 0.00 0.00 0.00 5.54
510 543 2.674220 GGCCAAGGGACTGGAGGAG 61.674 68.421 0.00 0.00 40.86 3.69
512 545 1.920325 CCAAGGGACTGGAGGAGCA 60.920 63.158 0.00 0.00 40.86 4.26
514 547 0.322008 CAAGGGACTGGAGGAGCAAC 60.322 60.000 0.00 0.00 40.86 4.17
515 548 0.768221 AAGGGACTGGAGGAGCAACA 60.768 55.000 0.00 0.00 40.86 3.33
516 549 0.768221 AGGGACTGGAGGAGCAACAA 60.768 55.000 0.00 0.00 37.18 2.83
517 550 0.322008 GGGACTGGAGGAGCAACAAG 60.322 60.000 0.00 0.00 0.00 3.16
518 551 0.398318 GGACTGGAGGAGCAACAAGT 59.602 55.000 0.00 0.00 0.00 3.16
519 552 1.623811 GGACTGGAGGAGCAACAAGTA 59.376 52.381 0.00 0.00 0.00 2.24
520 553 2.613223 GGACTGGAGGAGCAACAAGTAC 60.613 54.545 0.00 0.00 0.00 2.73
521 554 2.300437 GACTGGAGGAGCAACAAGTACT 59.700 50.000 0.00 0.00 0.00 2.73
522 555 2.706190 ACTGGAGGAGCAACAAGTACTT 59.294 45.455 1.12 1.12 0.00 2.24
524 557 4.246458 CTGGAGGAGCAACAAGTACTTAC 58.754 47.826 8.04 0.00 0.00 2.34
526 559 3.261137 GGAGGAGCAACAAGTACTTACCT 59.739 47.826 8.04 9.91 0.00 3.08
527 560 4.262938 GGAGGAGCAACAAGTACTTACCTT 60.263 45.833 8.04 0.00 0.00 3.50
528 561 5.306114 AGGAGCAACAAGTACTTACCTTT 57.694 39.130 8.04 0.00 0.00 3.11
530 563 5.061179 GGAGCAACAAGTACTTACCTTTCA 58.939 41.667 8.04 0.00 0.00 2.69
531 564 5.529800 GGAGCAACAAGTACTTACCTTTCAA 59.470 40.000 8.04 0.00 0.00 2.69
532 565 6.206829 GGAGCAACAAGTACTTACCTTTCAAT 59.793 38.462 8.04 0.00 0.00 2.57
533 566 7.203255 AGCAACAAGTACTTACCTTTCAATC 57.797 36.000 8.04 0.00 0.00 2.67
534 567 6.073222 AGCAACAAGTACTTACCTTTCAATCG 60.073 38.462 8.04 0.00 0.00 3.34
535 568 6.599437 CAACAAGTACTTACCTTTCAATCGG 58.401 40.000 8.04 0.00 0.00 4.18
541 586 1.745232 TACCTTTCAATCGGCGCAAT 58.255 45.000 10.83 0.00 0.00 3.56
572 617 1.078709 TGCTTCGCCTCTTTCAATCG 58.921 50.000 0.00 0.00 0.00 3.34
577 622 0.855349 CGCCTCTTTCAATCGGATCG 59.145 55.000 0.00 0.00 0.00 3.69
582 627 1.412710 TCTTTCAATCGGATCGGAGGG 59.587 52.381 9.03 3.77 0.00 4.30
586 631 0.249911 CAATCGGATCGGAGGGTTCC 60.250 60.000 9.03 0.00 40.33 3.62
587 632 0.398664 AATCGGATCGGAGGGTTCCT 60.399 55.000 9.03 0.00 41.67 3.36
596 641 2.936032 AGGGTTCCTCAGGTGGCC 60.936 66.667 0.00 0.00 0.00 5.36
597 642 3.256960 GGGTTCCTCAGGTGGCCA 61.257 66.667 0.00 0.00 0.00 5.36
598 643 2.034221 GGTTCCTCAGGTGGCCAC 59.966 66.667 28.57 28.57 0.00 5.01
627 676 2.575694 AGTGATTCTCGCTAGTGCAG 57.424 50.000 0.00 0.00 35.10 4.41
631 680 3.061429 GTGATTCTCGCTAGTGCAGAAAC 59.939 47.826 16.70 15.10 38.64 2.78
641 690 4.215399 GCTAGTGCAGAAACCAAACATGTA 59.785 41.667 0.00 0.00 39.41 2.29
645 694 4.036262 GTGCAGAAACCAAACATGTACAGA 59.964 41.667 0.00 0.00 0.00 3.41
649 698 6.198966 GCAGAAACCAAACATGTACAGAAAAG 59.801 38.462 0.00 0.00 0.00 2.27
651 700 7.973388 CAGAAACCAAACATGTACAGAAAAGAA 59.027 33.333 0.00 0.00 0.00 2.52
653 702 9.145865 GAAACCAAACATGTACAGAAAAGAAAA 57.854 29.630 0.00 0.00 0.00 2.29
672 721 4.705482 AAAAACCTGCAGCTGGGT 57.295 50.000 21.55 13.40 37.44 4.51
674 723 0.465287 AAAAACCTGCAGCTGGGTTG 59.535 50.000 23.13 0.00 44.02 3.77
675 724 0.687427 AAAACCTGCAGCTGGGTTGT 60.687 50.000 23.13 17.19 44.02 3.32
677 726 0.184933 AACCTGCAGCTGGGTTGTTA 59.815 50.000 22.15 0.00 43.28 2.41
679 728 1.203050 ACCTGCAGCTGGGTTGTTATT 60.203 47.619 21.55 0.00 30.80 1.40
681 730 1.888512 CTGCAGCTGGGTTGTTATTGT 59.111 47.619 17.12 0.00 0.00 2.71
683 732 2.035704 TGCAGCTGGGTTGTTATTGTTG 59.964 45.455 17.12 0.00 0.00 3.33
684 733 2.035832 GCAGCTGGGTTGTTATTGTTGT 59.964 45.455 17.12 0.00 0.00 3.32
685 734 3.492482 GCAGCTGGGTTGTTATTGTTGTT 60.492 43.478 17.12 0.00 0.00 2.83
686 735 4.261825 GCAGCTGGGTTGTTATTGTTGTTA 60.262 41.667 17.12 0.00 0.00 2.41
687 736 5.566627 GCAGCTGGGTTGTTATTGTTGTTAT 60.567 40.000 17.12 0.00 0.00 1.89
689 738 7.630513 GCAGCTGGGTTGTTATTGTTGTTATAT 60.631 37.037 17.12 0.00 0.00 0.86
690 739 8.898761 CAGCTGGGTTGTTATTGTTGTTATATA 58.101 33.333 5.57 0.00 0.00 0.86
691 740 8.899771 AGCTGGGTTGTTATTGTTGTTATATAC 58.100 33.333 0.00 0.00 0.00 1.47
692 741 8.899771 GCTGGGTTGTTATTGTTGTTATATACT 58.100 33.333 0.00 0.00 0.00 2.12
717 766 9.621629 CTACGAGAGAGTATCATATAATCCCTT 57.378 37.037 0.00 0.00 37.82 3.95
718 767 8.287439 ACGAGAGAGTATCATATAATCCCTTG 57.713 38.462 0.00 0.00 37.82 3.61
729 778 1.720781 AATCCCTTGCCTGCAGTTTT 58.279 45.000 13.81 0.00 0.00 2.43
732 781 0.465287 CCCTTGCCTGCAGTTTTTGT 59.535 50.000 13.81 0.00 0.00 2.83
734 783 2.288395 CCCTTGCCTGCAGTTTTTGTAG 60.288 50.000 13.81 0.00 39.04 2.74
741 790 3.254166 CCTGCAGTTTTTGTAGCATCTGT 59.746 43.478 13.81 0.00 38.11 3.41
742 791 4.261741 CCTGCAGTTTTTGTAGCATCTGTT 60.262 41.667 13.81 0.00 38.11 3.16
743 792 5.261209 TGCAGTTTTTGTAGCATCTGTTT 57.739 34.783 0.00 0.00 31.05 2.83
744 793 6.384258 TGCAGTTTTTGTAGCATCTGTTTA 57.616 33.333 0.00 0.00 31.05 2.01
746 795 6.862608 TGCAGTTTTTGTAGCATCTGTTTATG 59.137 34.615 0.00 0.00 31.05 1.90
747 796 6.863126 GCAGTTTTTGTAGCATCTGTTTATGT 59.137 34.615 0.00 0.00 0.00 2.29
772 830 7.773864 TTACTTAACAACAATCACACGAAGA 57.226 32.000 0.00 0.00 0.00 2.87
780 838 4.887748 ACAATCACACGAAGAAGATGACT 58.112 39.130 0.00 0.00 0.00 3.41
781 839 6.025749 ACAATCACACGAAGAAGATGACTA 57.974 37.500 0.00 0.00 0.00 2.59
782 840 6.634805 ACAATCACACGAAGAAGATGACTAT 58.365 36.000 0.00 0.00 0.00 2.12
784 842 7.063898 ACAATCACACGAAGAAGATGACTATTG 59.936 37.037 0.00 0.00 0.00 1.90
785 843 6.267496 TCACACGAAGAAGATGACTATTGA 57.733 37.500 0.00 0.00 0.00 2.57
786 844 6.867550 TCACACGAAGAAGATGACTATTGAT 58.132 36.000 0.00 0.00 0.00 2.57
787 845 6.975197 TCACACGAAGAAGATGACTATTGATC 59.025 38.462 0.00 0.00 0.00 2.92
789 847 7.276438 CACACGAAGAAGATGACTATTGATCAA 59.724 37.037 11.26 11.26 0.00 2.57
790 848 7.490725 ACACGAAGAAGATGACTATTGATCAAG 59.509 37.037 14.54 3.46 0.00 3.02
791 849 6.983307 ACGAAGAAGATGACTATTGATCAAGG 59.017 38.462 14.54 11.33 0.00 3.61
792 850 6.073873 CGAAGAAGATGACTATTGATCAAGGC 60.074 42.308 14.54 3.62 0.00 4.35
824 894 5.665459 AGTGATAGTTAACTGTGCTCATCC 58.335 41.667 18.56 6.35 0.00 3.51
843 932 3.476552 TCCCCTGATGATCATTTAACGC 58.523 45.455 10.14 0.00 0.00 4.84
851 940 6.593072 TGATGATCATTTAACGCGAATCATC 58.407 36.000 15.93 20.80 41.84 2.92
908 997 2.143876 AAAAGTGTTGGGCAGTCAGT 57.856 45.000 0.00 0.00 0.00 3.41
909 998 1.680338 AAAGTGTTGGGCAGTCAGTC 58.320 50.000 0.00 0.00 0.00 3.51
910 999 0.546122 AAGTGTTGGGCAGTCAGTCA 59.454 50.000 0.00 0.00 0.00 3.41
911 1000 0.767375 AGTGTTGGGCAGTCAGTCAT 59.233 50.000 0.00 0.00 0.00 3.06
912 1001 0.877071 GTGTTGGGCAGTCAGTCATG 59.123 55.000 0.00 0.00 0.00 3.07
913 1002 0.890542 TGTTGGGCAGTCAGTCATGC 60.891 55.000 0.00 0.00 41.80 4.06
914 1003 0.607489 GTTGGGCAGTCAGTCATGCT 60.607 55.000 0.00 0.00 42.19 3.79
915 1004 0.321919 TTGGGCAGTCAGTCATGCTC 60.322 55.000 0.00 0.00 43.47 4.26
916 1005 1.196766 TGGGCAGTCAGTCATGCTCT 61.197 55.000 0.00 0.00 43.56 4.09
925 1045 3.431572 GTCAGTCATGCTCTGTTTCAGAC 59.568 47.826 14.23 0.00 35.39 3.51
928 1048 4.063689 AGTCATGCTCTGTTTCAGACAAG 58.936 43.478 0.00 0.00 37.93 3.16
931 1051 4.753610 TCATGCTCTGTTTCAGACAAGAAG 59.246 41.667 0.00 0.00 37.93 2.85
932 1052 4.406648 TGCTCTGTTTCAGACAAGAAGA 57.593 40.909 0.00 0.00 37.93 2.87
933 1053 4.965814 TGCTCTGTTTCAGACAAGAAGAT 58.034 39.130 0.00 0.00 37.93 2.40
936 1056 6.815641 TGCTCTGTTTCAGACAAGAAGATATC 59.184 38.462 0.00 0.00 37.93 1.63
938 1058 6.925211 TCTGTTTCAGACAAGAAGATATCGT 58.075 36.000 0.00 0.00 37.93 3.73
942 1062 6.951256 TTCAGACAAGAAGATATCGTTGTG 57.049 37.500 19.59 11.42 32.87 3.33
943 1063 4.864806 TCAGACAAGAAGATATCGTTGTGC 59.135 41.667 19.59 13.33 32.87 4.57
945 1065 2.348666 ACAAGAAGATATCGTTGTGCGC 59.651 45.455 15.95 0.00 41.07 6.09
946 1066 2.586258 AGAAGATATCGTTGTGCGCT 57.414 45.000 9.73 0.00 41.07 5.92
947 1067 2.893637 AGAAGATATCGTTGTGCGCTT 58.106 42.857 9.73 0.00 41.07 4.68
948 1068 2.604914 AGAAGATATCGTTGTGCGCTTG 59.395 45.455 9.73 0.00 41.07 4.01
965 1085 4.270325 GCGCTTGTTAGATTCCTAATTCGT 59.730 41.667 0.00 0.00 37.23 3.85
967 1087 6.411652 CGCTTGTTAGATTCCTAATTCGTTC 58.588 40.000 0.00 0.00 37.23 3.95
983 1103 0.377203 GTTCGGTGAATCGGATTGGC 59.623 55.000 8.18 0.55 0.00 4.52
1005 1142 1.696336 GCAGGAAGGAGATAGATGGCA 59.304 52.381 0.00 0.00 0.00 4.92
1110 1247 5.470047 TCCAGGTGAAGAAGAAGTAGAAC 57.530 43.478 0.00 0.00 0.00 3.01
1115 1252 4.452795 GGTGAAGAAGAAGTAGAACCAAGC 59.547 45.833 0.00 0.00 0.00 4.01
1117 1254 5.050023 GTGAAGAAGAAGTAGAACCAAGCAC 60.050 44.000 0.00 0.00 0.00 4.40
1123 1260 7.885399 AGAAGAAGTAGAACCAAGCACAATTAT 59.115 33.333 0.00 0.00 0.00 1.28
1152 1289 3.145286 GCTTCTCTTCCTTGCTGACTTT 58.855 45.455 0.00 0.00 0.00 2.66
1153 1290 3.567585 GCTTCTCTTCCTTGCTGACTTTT 59.432 43.478 0.00 0.00 0.00 2.27
1154 1291 4.757149 GCTTCTCTTCCTTGCTGACTTTTA 59.243 41.667 0.00 0.00 0.00 1.52
1155 1292 5.106752 GCTTCTCTTCCTTGCTGACTTTTAG 60.107 44.000 0.00 0.00 0.00 1.85
1156 1293 4.319177 TCTCTTCCTTGCTGACTTTTAGC 58.681 43.478 0.00 0.00 41.49 3.09
1157 1294 4.040952 TCTCTTCCTTGCTGACTTTTAGCT 59.959 41.667 0.00 0.00 41.66 3.32
1160 1297 1.881973 CCTTGCTGACTTTTAGCTGCA 59.118 47.619 1.02 0.00 41.66 4.41
1161 1298 2.490903 CCTTGCTGACTTTTAGCTGCAT 59.509 45.455 1.02 0.00 41.66 3.96
1162 1299 3.057033 CCTTGCTGACTTTTAGCTGCATT 60.057 43.478 1.02 0.00 41.66 3.56
1188 1333 2.616510 GGGGTCAAGATTGGACAGACAG 60.617 54.545 0.00 0.00 37.00 3.51
1201 1346 5.423015 TGGACAGACAGAGCTTAATCAATC 58.577 41.667 0.00 0.00 0.00 2.67
1211 1358 7.500559 ACAGAGCTTAATCAATCAATAGGAACC 59.499 37.037 0.00 0.00 0.00 3.62
1214 1361 9.561069 GAGCTTAATCAATCAATAGGAACCTAA 57.439 33.333 4.63 0.00 31.73 2.69
1215 1362 9.566432 AGCTTAATCAATCAATAGGAACCTAAG 57.434 33.333 4.63 1.73 31.73 2.18
1231 1392 5.959618 ACCTAAGTTTAATGTTGGACTGC 57.040 39.130 0.00 0.00 0.00 4.40
1244 1405 0.393537 GGACTGCTTGGGGATGTCAG 60.394 60.000 0.00 0.00 0.00 3.51
1252 1413 2.507407 TGGGGATGTCAGGCTAAAAC 57.493 50.000 0.00 0.00 0.00 2.43
1253 1414 1.707989 TGGGGATGTCAGGCTAAAACA 59.292 47.619 0.00 0.00 0.00 2.83
1263 1443 5.008613 TGTCAGGCTAAAACAAAACTAGCTG 59.991 40.000 0.00 0.00 38.47 4.24
1264 1444 4.023193 TCAGGCTAAAACAAAACTAGCTGC 60.023 41.667 0.00 0.00 38.47 5.25
1271 1451 1.873591 ACAAAACTAGCTGCGGACTTG 59.126 47.619 0.00 0.00 0.00 3.16
1272 1452 1.873591 CAAAACTAGCTGCGGACTTGT 59.126 47.619 0.00 0.00 0.00 3.16
1277 1457 4.730949 ACTAGCTGCGGACTTGTAATTA 57.269 40.909 0.00 0.00 0.00 1.40
1278 1458 5.080969 ACTAGCTGCGGACTTGTAATTAA 57.919 39.130 0.00 0.00 0.00 1.40
1288 1495 8.564574 TGCGGACTTGTAATTAATTATCCAATC 58.435 33.333 18.92 13.68 0.00 2.67
1306 1513 3.944055 ATCTGAGCACGTTTCTGTAGT 57.056 42.857 0.00 0.00 0.00 2.73
1310 1517 3.381045 TGAGCACGTTTCTGTAGTTGAG 58.619 45.455 0.00 0.00 0.00 3.02
1311 1518 3.181479 TGAGCACGTTTCTGTAGTTGAGT 60.181 43.478 0.00 0.00 0.00 3.41
1312 1519 3.793559 AGCACGTTTCTGTAGTTGAGTT 58.206 40.909 0.00 0.00 0.00 3.01
1363 1589 7.414222 ACTCCCTCTGTAAACAAATATACGA 57.586 36.000 0.00 0.00 0.00 3.43
1364 1590 7.490000 ACTCCCTCTGTAAACAAATATACGAG 58.510 38.462 0.00 0.00 0.00 4.18
1365 1591 7.123847 ACTCCCTCTGTAAACAAATATACGAGT 59.876 37.037 0.00 0.00 0.00 4.18
1366 1592 7.844009 TCCCTCTGTAAACAAATATACGAGTT 58.156 34.615 0.00 0.00 0.00 3.01
1367 1593 8.970020 TCCCTCTGTAAACAAATATACGAGTTA 58.030 33.333 0.00 0.00 0.00 2.24
1368 1594 9.245962 CCCTCTGTAAACAAATATACGAGTTAG 57.754 37.037 0.00 0.00 0.00 2.34
1369 1595 9.798994 CCTCTGTAAACAAATATACGAGTTAGT 57.201 33.333 0.00 0.00 0.00 2.24
1380 1606 8.725212 AATATACGAGTTAGTGATCTAAACGC 57.275 34.615 0.00 0.00 39.38 4.84
1381 1607 4.698583 ACGAGTTAGTGATCTAAACGCT 57.301 40.909 0.00 0.00 39.38 5.07
1382 1608 4.660105 ACGAGTTAGTGATCTAAACGCTC 58.340 43.478 0.00 0.00 39.38 5.03
1383 1609 4.395542 ACGAGTTAGTGATCTAAACGCTCT 59.604 41.667 0.00 0.00 39.38 4.09
1384 1610 5.106237 ACGAGTTAGTGATCTAAACGCTCTT 60.106 40.000 0.00 0.00 39.38 2.85
1385 1611 6.093219 ACGAGTTAGTGATCTAAACGCTCTTA 59.907 38.462 0.00 0.00 39.38 2.10
1386 1612 7.133513 CGAGTTAGTGATCTAAACGCTCTTAT 58.866 38.462 0.00 0.00 37.81 1.73
1387 1613 8.281194 CGAGTTAGTGATCTAAACGCTCTTATA 58.719 37.037 0.00 0.00 37.81 0.98
1388 1614 9.947669 GAGTTAGTGATCTAAACGCTCTTATAA 57.052 33.333 0.00 0.00 37.81 0.98
1393 1619 9.654663 AGTGATCTAAACGCTCTTATAAAAGTT 57.345 29.630 0.00 0.00 34.13 2.66
1401 1627 7.829378 ACGCTCTTATAAAAGTTTACAGAGG 57.171 36.000 16.49 11.85 35.69 3.69
1402 1628 6.817140 ACGCTCTTATAAAAGTTTACAGAGGG 59.183 38.462 22.31 22.31 43.34 4.30
1403 1629 7.039882 CGCTCTTATAAAAGTTTACAGAGGGA 58.960 38.462 20.93 3.69 42.11 4.20
1404 1630 7.222999 CGCTCTTATAAAAGTTTACAGAGGGAG 59.777 40.741 20.93 10.43 42.11 4.30
1405 1631 8.041919 GCTCTTATAAAAGTTTACAGAGGGAGT 58.958 37.037 16.49 0.00 35.69 3.85
1422 1648 6.553100 AGAGGGAGTATATTGGAGTTTCAGAG 59.447 42.308 0.00 0.00 0.00 3.35
1424 1650 7.079048 AGGGAGTATATTGGAGTTTCAGAGAT 58.921 38.462 0.00 0.00 0.00 2.75
1425 1651 8.235230 AGGGAGTATATTGGAGTTTCAGAGATA 58.765 37.037 0.00 0.00 0.00 1.98
1441 1707 7.742556 TCAGAGATACACTGTGATCTATCTG 57.257 40.000 18.57 18.46 42.63 2.90
1443 1709 7.443879 TCAGAGATACACTGTGATCTATCTGTC 59.556 40.741 18.57 9.53 42.63 3.51
1444 1710 6.426633 AGAGATACACTGTGATCTATCTGTCG 59.573 42.308 18.57 0.00 32.47 4.35
1445 1711 3.428746 ACACTGTGATCTATCTGTCGC 57.571 47.619 15.86 0.00 0.00 5.19
1446 1712 2.755103 ACACTGTGATCTATCTGTCGCA 59.245 45.455 15.86 0.00 34.11 5.10
1450 1716 2.223665 TGTGATCTATCTGTCGCAGCAG 60.224 50.000 0.00 0.00 37.81 4.24
1451 1717 2.027385 TGATCTATCTGTCGCAGCAGT 58.973 47.619 0.00 0.00 37.70 4.40
1452 1718 2.428530 TGATCTATCTGTCGCAGCAGTT 59.571 45.455 0.00 0.14 37.70 3.16
1453 1719 2.284263 TCTATCTGTCGCAGCAGTTG 57.716 50.000 0.00 0.00 37.70 3.16
1462 1728 2.033757 CAGCAGTTGCAGGAGGCT 59.966 61.111 6.90 0.00 45.15 4.58
1463 1729 2.033757 AGCAGTTGCAGGAGGCTG 59.966 61.111 6.90 2.67 45.15 4.85
1464 1730 2.282040 GCAGTTGCAGGAGGCTGT 60.282 61.111 0.00 0.00 45.15 4.40
1465 1731 2.331132 GCAGTTGCAGGAGGCTGTC 61.331 63.158 0.00 0.00 45.15 3.51
1466 1732 1.071987 CAGTTGCAGGAGGCTGTCA 59.928 57.895 0.00 0.00 45.15 3.58
1467 1733 1.072159 AGTTGCAGGAGGCTGTCAC 59.928 57.895 0.00 0.00 45.15 3.67
1468 1734 1.227943 GTTGCAGGAGGCTGTCACA 60.228 57.895 0.00 0.00 45.15 3.58
1469 1735 0.607489 GTTGCAGGAGGCTGTCACAT 60.607 55.000 0.00 0.00 45.15 3.21
1470 1736 0.607217 TTGCAGGAGGCTGTCACATG 60.607 55.000 0.00 0.00 45.15 3.21
1471 1737 1.002868 GCAGGAGGCTGTCACATGT 60.003 57.895 0.00 0.00 40.25 3.21
1472 1738 0.250234 GCAGGAGGCTGTCACATGTA 59.750 55.000 0.00 0.00 40.25 2.29
1473 1739 1.741732 GCAGGAGGCTGTCACATGTAG 60.742 57.143 0.00 0.00 40.25 2.74
1474 1740 1.134580 CAGGAGGCTGTCACATGTAGG 60.135 57.143 0.00 0.00 0.00 3.18
1475 1741 1.195115 GGAGGCTGTCACATGTAGGA 58.805 55.000 0.00 0.00 0.00 2.94
1476 1742 1.137872 GGAGGCTGTCACATGTAGGAG 59.862 57.143 0.00 0.00 0.00 3.69
1477 1743 0.539051 AGGCTGTCACATGTAGGAGC 59.461 55.000 0.00 5.82 0.00 4.70
1478 1744 0.539051 GGCTGTCACATGTAGGAGCT 59.461 55.000 17.13 0.00 0.00 4.09
1479 1745 1.472376 GGCTGTCACATGTAGGAGCTC 60.472 57.143 17.13 4.71 0.00 4.09
1480 1746 1.472376 GCTGTCACATGTAGGAGCTCC 60.472 57.143 26.22 26.22 0.00 4.70
1523 1789 8.688747 TCGATATGATATGCTATGATCTGTCT 57.311 34.615 0.00 0.00 0.00 3.41
1604 1888 1.766461 CTAGGGGAGGAATGGCCGT 60.766 63.158 0.00 0.00 43.43 5.68
1745 2029 1.008767 GAAGTACGAGCGCGCCTAT 60.009 57.895 30.33 15.97 42.48 2.57
1827 3529 6.531594 GCAGGAGAATTGGTAGCAAATTAAAC 59.468 38.462 12.00 1.44 0.00 2.01
2000 3728 2.051334 TTTGTTGTGTGGGGAGACAG 57.949 50.000 0.00 0.00 0.00 3.51
2002 3730 1.208706 TGTTGTGTGGGGAGACAGAA 58.791 50.000 0.00 0.00 0.00 3.02
2005 3733 3.392947 TGTTGTGTGGGGAGACAGAATTA 59.607 43.478 0.00 0.00 32.32 1.40
2007 3735 4.487714 TGTGTGGGGAGACAGAATTATC 57.512 45.455 0.00 0.00 0.00 1.75
2008 3736 3.199946 TGTGTGGGGAGACAGAATTATCC 59.800 47.826 0.00 0.00 0.00 2.59
2049 3780 9.598517 GCCATTTTCTCATTGGTCATAAATAAA 57.401 29.630 0.00 0.00 32.90 1.40
2062 3793 9.664332 TGGTCATAAATAAAAATGGATGGTTTG 57.336 29.630 0.00 0.00 0.00 2.93
2075 3806 7.664552 ATGGATGGTTTGACAATGTATGATT 57.335 32.000 0.00 0.00 0.00 2.57
2101 3832 7.168219 TGTATTTCCTTGCTCAGATTAGTTGT 58.832 34.615 0.00 0.00 0.00 3.32
2158 3893 3.925299 TGACAAGCAACACAAACACATTG 59.075 39.130 0.00 0.00 44.95 2.82
2169 3904 8.388853 CAACACAAACACATTGATTTGATTTGA 58.611 29.630 18.52 0.00 41.85 2.69
2179 3914 9.767228 ACATTGATTTGATTTGAGATGAAAACA 57.233 25.926 0.00 0.00 0.00 2.83
2188 3923 9.263538 TGATTTGAGATGAAAACAAAATTCAGG 57.736 29.630 0.00 0.00 39.92 3.86
2189 3924 9.480053 GATTTGAGATGAAAACAAAATTCAGGA 57.520 29.630 0.00 0.00 39.92 3.86
2195 3930 8.423349 AGATGAAAACAAAATTCAGGAACATCA 58.577 29.630 0.00 0.00 39.92 3.07
2196 3931 8.961294 ATGAAAACAAAATTCAGGAACATCAA 57.039 26.923 0.00 0.00 39.92 2.57
2220 3955 9.746711 CAAAAGAAAAATACTATCAGACACTCG 57.253 33.333 0.00 0.00 0.00 4.18
2229 3964 3.791973 ATCAGACACTCGTCATTCTCC 57.208 47.619 0.00 0.00 45.23 3.71
2296 4031 5.104277 TGTGTACAGGGAAGAAGAAAAAGGA 60.104 40.000 0.00 0.00 0.00 3.36
2359 4094 4.421033 TCACGACTTACTGCTTCTACAG 57.579 45.455 0.00 0.00 43.59 2.74
2474 4210 2.775890 CTGGACAAGAACAGCAGACAT 58.224 47.619 0.00 0.00 0.00 3.06
2475 4211 2.483106 CTGGACAAGAACAGCAGACATG 59.517 50.000 0.00 0.00 0.00 3.21
2476 4212 2.104622 TGGACAAGAACAGCAGACATGA 59.895 45.455 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 7.984422 TTGTGCTTCTCTTATGAAAAGATCA 57.016 32.000 0.00 0.00 43.67 2.92
12 13 9.852091 AATTTGTGCTTCTCTTATGAAAAGATC 57.148 29.630 0.00 0.00 0.00 2.75
14 15 9.467258 CAAATTTGTGCTTCTCTTATGAAAAGA 57.533 29.630 10.15 0.00 0.00 2.52
15 16 9.252962 ACAAATTTGTGCTTCTCTTATGAAAAG 57.747 29.630 22.71 0.00 40.49 2.27
16 17 9.598517 AACAAATTTGTGCTTCTCTTATGAAAA 57.401 25.926 23.93 0.00 41.31 2.29
17 18 9.598517 AAACAAATTTGTGCTTCTCTTATGAAA 57.401 25.926 23.93 0.00 41.31 2.69
18 19 9.248291 GAAACAAATTTGTGCTTCTCTTATGAA 57.752 29.630 23.93 0.00 41.31 2.57
19 20 8.632679 AGAAACAAATTTGTGCTTCTCTTATGA 58.367 29.630 23.93 0.00 41.31 2.15
20 21 8.697067 CAGAAACAAATTTGTGCTTCTCTTATG 58.303 33.333 25.24 17.31 41.31 1.90
21 22 8.416329 ACAGAAACAAATTTGTGCTTCTCTTAT 58.584 29.630 25.24 11.38 41.64 1.73
22 23 7.701924 CACAGAAACAAATTTGTGCTTCTCTTA 59.298 33.333 25.24 0.00 41.64 2.10
23 24 6.532657 CACAGAAACAAATTTGTGCTTCTCTT 59.467 34.615 25.24 15.39 41.64 2.85
24 25 6.038356 CACAGAAACAAATTTGTGCTTCTCT 58.962 36.000 25.24 16.63 41.64 3.10
25 26 6.035843 TCACAGAAACAAATTTGTGCTTCTC 58.964 36.000 25.24 16.78 41.64 2.87
26 27 5.964758 TCACAGAAACAAATTTGTGCTTCT 58.035 33.333 23.93 23.68 41.64 2.85
27 28 6.035843 TCTCACAGAAACAAATTTGTGCTTC 58.964 36.000 23.93 22.05 41.64 3.86
28 29 5.964758 TCTCACAGAAACAAATTTGTGCTT 58.035 33.333 23.93 15.38 41.64 3.91
29 30 5.581126 TCTCACAGAAACAAATTTGTGCT 57.419 34.783 23.93 19.85 41.64 4.40
30 31 5.276536 GCTTCTCACAGAAACAAATTTGTGC 60.277 40.000 23.93 18.08 41.64 4.57
31 32 5.806502 TGCTTCTCACAGAAACAAATTTGTG 59.193 36.000 23.93 13.81 43.15 3.33
32 33 5.807011 GTGCTTCTCACAGAAACAAATTTGT 59.193 36.000 18.13 18.13 44.98 2.83
33 34 6.264909 GTGCTTCTCACAGAAACAAATTTG 57.735 37.500 16.67 16.67 44.98 2.32
52 53 7.839883 CTTTTCCAAGAAACACGGTTGTGCT 62.840 44.000 0.00 0.00 40.02 4.40
53 54 5.720340 CTTTTCCAAGAAACACGGTTGTGC 61.720 45.833 0.00 0.00 40.02 4.57
54 55 3.857093 CTTTTCCAAGAAACACGGTTGTG 59.143 43.478 0.00 0.00 41.24 3.33
55 56 3.119280 CCTTTTCCAAGAAACACGGTTGT 60.119 43.478 0.00 0.00 31.92 3.32
56 57 3.129638 TCCTTTTCCAAGAAACACGGTTG 59.870 43.478 0.00 0.00 30.57 3.77
57 58 3.358118 TCCTTTTCCAAGAAACACGGTT 58.642 40.909 0.00 0.00 30.57 4.44
58 59 3.007473 TCCTTTTCCAAGAAACACGGT 57.993 42.857 0.00 0.00 30.57 4.83
59 60 4.379339 TTTCCTTTTCCAAGAAACACGG 57.621 40.909 0.00 0.00 30.57 4.94
111 112 2.020720 TGCTTCTCGTGCAAGGAAAAA 58.979 42.857 0.00 0.00 37.51 1.94
112 113 1.333619 GTGCTTCTCGTGCAAGGAAAA 59.666 47.619 0.00 0.00 42.41 2.29
113 114 0.944386 GTGCTTCTCGTGCAAGGAAA 59.056 50.000 0.00 0.00 42.41 3.13
114 115 0.179059 TGTGCTTCTCGTGCAAGGAA 60.179 50.000 0.00 1.93 42.41 3.36
115 116 0.035317 ATGTGCTTCTCGTGCAAGGA 59.965 50.000 0.00 0.00 42.41 3.36
116 117 1.725641 TATGTGCTTCTCGTGCAAGG 58.274 50.000 0.00 0.00 42.41 3.61
117 118 4.093514 CAAATATGTGCTTCTCGTGCAAG 58.906 43.478 0.00 0.00 42.41 4.01
118 119 3.750652 TCAAATATGTGCTTCTCGTGCAA 59.249 39.130 0.00 0.00 42.41 4.08
119 120 3.333804 TCAAATATGTGCTTCTCGTGCA 58.666 40.909 0.00 0.00 38.19 4.57
120 121 3.618594 TCTCAAATATGTGCTTCTCGTGC 59.381 43.478 0.00 0.00 0.00 5.34
121 122 5.784750 TTCTCAAATATGTGCTTCTCGTG 57.215 39.130 0.00 0.00 0.00 4.35
122 123 6.036517 GTGATTCTCAAATATGTGCTTCTCGT 59.963 38.462 0.00 0.00 0.00 4.18
123 124 6.417327 GTGATTCTCAAATATGTGCTTCTCG 58.583 40.000 0.00 0.00 0.00 4.04
124 125 6.317140 TGGTGATTCTCAAATATGTGCTTCTC 59.683 38.462 0.00 0.00 0.00 2.87
125 126 6.182627 TGGTGATTCTCAAATATGTGCTTCT 58.817 36.000 0.00 0.00 0.00 2.85
126 127 6.441093 TGGTGATTCTCAAATATGTGCTTC 57.559 37.500 0.00 0.00 0.00 3.86
127 128 7.414222 AATGGTGATTCTCAAATATGTGCTT 57.586 32.000 0.00 0.00 0.00 3.91
128 129 8.408601 GTTAATGGTGATTCTCAAATATGTGCT 58.591 33.333 0.00 0.00 0.00 4.40
129 130 8.190122 TGTTAATGGTGATTCTCAAATATGTGC 58.810 33.333 0.00 0.00 0.00 4.57
135 136 8.641541 ACTTGTTGTTAATGGTGATTCTCAAAT 58.358 29.630 0.00 0.00 0.00 2.32
136 137 7.920151 CACTTGTTGTTAATGGTGATTCTCAAA 59.080 33.333 0.00 0.00 0.00 2.69
137 138 7.284261 TCACTTGTTGTTAATGGTGATTCTCAA 59.716 33.333 0.00 0.00 0.00 3.02
138 139 6.770303 TCACTTGTTGTTAATGGTGATTCTCA 59.230 34.615 0.00 0.00 0.00 3.27
139 140 7.202016 TCACTTGTTGTTAATGGTGATTCTC 57.798 36.000 0.00 0.00 0.00 2.87
140 141 7.765695 ATCACTTGTTGTTAATGGTGATTCT 57.234 32.000 0.00 0.00 40.15 2.40
141 142 8.816640 AAATCACTTGTTGTTAATGGTGATTC 57.183 30.769 15.99 0.00 46.62 2.52
143 144 7.171337 GCAAAATCACTTGTTGTTAATGGTGAT 59.829 33.333 0.00 0.00 43.37 3.06
144 145 6.478344 GCAAAATCACTTGTTGTTAATGGTGA 59.522 34.615 0.00 0.00 37.94 4.02
145 146 6.257411 TGCAAAATCACTTGTTGTTAATGGTG 59.743 34.615 0.00 0.00 0.00 4.17
146 147 6.344500 TGCAAAATCACTTGTTGTTAATGGT 58.656 32.000 0.00 0.00 0.00 3.55
147 148 6.841443 TGCAAAATCACTTGTTGTTAATGG 57.159 33.333 0.00 0.00 0.00 3.16
151 152 9.202273 GGAAATATGCAAAATCACTTGTTGTTA 57.798 29.630 0.00 0.00 0.00 2.41
152 153 7.933033 AGGAAATATGCAAAATCACTTGTTGTT 59.067 29.630 0.00 0.00 0.00 2.83
153 154 7.444299 AGGAAATATGCAAAATCACTTGTTGT 58.556 30.769 0.00 0.00 0.00 3.32
154 155 7.894376 AGGAAATATGCAAAATCACTTGTTG 57.106 32.000 0.00 0.00 0.00 3.33
155 156 8.907222 AAAGGAAATATGCAAAATCACTTGTT 57.093 26.923 0.00 0.00 0.00 2.83
156 157 8.907222 AAAAGGAAATATGCAAAATCACTTGT 57.093 26.923 0.00 0.00 0.00 3.16
181 182 8.991026 CAGGAAATATGCAAAATGTCTCAAAAA 58.009 29.630 0.00 0.00 0.00 1.94
182 183 8.366401 TCAGGAAATATGCAAAATGTCTCAAAA 58.634 29.630 0.00 0.00 0.00 2.44
183 184 7.894708 TCAGGAAATATGCAAAATGTCTCAAA 58.105 30.769 0.00 0.00 0.00 2.69
184 185 7.394077 TCTCAGGAAATATGCAAAATGTCTCAA 59.606 33.333 0.00 0.00 0.00 3.02
185 186 6.885918 TCTCAGGAAATATGCAAAATGTCTCA 59.114 34.615 0.00 0.00 0.00 3.27
186 187 7.325660 TCTCAGGAAATATGCAAAATGTCTC 57.674 36.000 0.00 0.00 0.00 3.36
187 188 7.147949 CCTTCTCAGGAAATATGCAAAATGTCT 60.148 37.037 0.00 0.00 44.19 3.41
188 189 6.976925 CCTTCTCAGGAAATATGCAAAATGTC 59.023 38.462 0.00 0.00 44.19 3.06
189 190 6.127253 CCCTTCTCAGGAAATATGCAAAATGT 60.127 38.462 0.00 0.00 44.19 2.71
190 191 6.278363 CCCTTCTCAGGAAATATGCAAAATG 58.722 40.000 0.00 0.00 44.19 2.32
191 192 5.364735 CCCCTTCTCAGGAAATATGCAAAAT 59.635 40.000 0.00 0.00 44.19 1.82
192 193 4.711355 CCCCTTCTCAGGAAATATGCAAAA 59.289 41.667 0.00 0.00 44.19 2.44
193 194 4.017591 TCCCCTTCTCAGGAAATATGCAAA 60.018 41.667 0.00 0.00 44.19 3.68
194 195 3.527253 TCCCCTTCTCAGGAAATATGCAA 59.473 43.478 0.00 0.00 44.19 4.08
195 196 3.122480 TCCCCTTCTCAGGAAATATGCA 58.878 45.455 0.00 0.00 44.19 3.96
196 197 3.137360 ACTCCCCTTCTCAGGAAATATGC 59.863 47.826 0.00 0.00 44.19 3.14
197 198 4.445448 CCACTCCCCTTCTCAGGAAATATG 60.445 50.000 0.00 0.00 44.19 1.78
198 199 3.718956 CCACTCCCCTTCTCAGGAAATAT 59.281 47.826 0.00 0.00 44.19 1.28
199 200 3.115390 CCACTCCCCTTCTCAGGAAATA 58.885 50.000 0.00 0.00 44.19 1.40
200 201 1.918957 CCACTCCCCTTCTCAGGAAAT 59.081 52.381 0.00 0.00 44.19 2.17
201 202 1.362224 CCACTCCCCTTCTCAGGAAA 58.638 55.000 0.00 0.00 44.19 3.13
202 203 0.193574 ACCACTCCCCTTCTCAGGAA 59.806 55.000 0.00 0.00 44.19 3.36
203 204 0.252284 GACCACTCCCCTTCTCAGGA 60.252 60.000 0.00 0.00 44.19 3.86
204 205 1.268283 GGACCACTCCCCTTCTCAGG 61.268 65.000 0.00 0.00 40.45 3.86
205 206 2.291856 GGACCACTCCCCTTCTCAG 58.708 63.158 0.00 0.00 0.00 3.35
206 207 4.561155 GGACCACTCCCCTTCTCA 57.439 61.111 0.00 0.00 0.00 3.27
217 218 4.035102 GTGAGGGGCTGGGACCAC 62.035 72.222 0.00 0.00 27.52 4.16
220 221 4.083862 GACGTGAGGGGCTGGGAC 62.084 72.222 0.00 0.00 0.00 4.46
221 222 4.316823 AGACGTGAGGGGCTGGGA 62.317 66.667 0.00 0.00 0.00 4.37
222 223 3.775654 GAGACGTGAGGGGCTGGG 61.776 72.222 0.00 0.00 0.00 4.45
223 224 4.135153 CGAGACGTGAGGGGCTGG 62.135 72.222 0.00 0.00 0.00 4.85
224 225 2.436087 AAACGAGACGTGAGGGGCTG 62.436 60.000 0.00 0.00 39.99 4.85
225 226 2.156051 GAAACGAGACGTGAGGGGCT 62.156 60.000 0.00 0.00 39.99 5.19
226 227 1.737008 GAAACGAGACGTGAGGGGC 60.737 63.158 0.00 0.00 39.99 5.80
227 228 0.317479 AAGAAACGAGACGTGAGGGG 59.683 55.000 0.00 0.00 39.99 4.79
228 229 1.269998 AGAAGAAACGAGACGTGAGGG 59.730 52.381 0.00 0.00 39.99 4.30
229 230 2.586900 GAGAAGAAACGAGACGTGAGG 58.413 52.381 0.00 0.00 39.99 3.86
230 231 2.586900 GGAGAAGAAACGAGACGTGAG 58.413 52.381 0.00 0.00 39.99 3.51
231 232 1.268899 GGGAGAAGAAACGAGACGTGA 59.731 52.381 0.00 0.00 39.99 4.35
232 233 1.669211 GGGGAGAAGAAACGAGACGTG 60.669 57.143 0.00 0.00 39.99 4.49
233 234 0.602060 GGGGAGAAGAAACGAGACGT 59.398 55.000 0.00 0.00 43.97 4.34
234 235 0.456312 CGGGGAGAAGAAACGAGACG 60.456 60.000 0.00 0.00 0.00 4.18
235 236 0.736672 GCGGGGAGAAGAAACGAGAC 60.737 60.000 0.00 0.00 0.00 3.36
236 237 1.590147 GCGGGGAGAAGAAACGAGA 59.410 57.895 0.00 0.00 0.00 4.04
237 238 1.448013 GGCGGGGAGAAGAAACGAG 60.448 63.158 0.00 0.00 0.00 4.18
238 239 2.660802 GGCGGGGAGAAGAAACGA 59.339 61.111 0.00 0.00 0.00 3.85
239 240 2.813908 CGGCGGGGAGAAGAAACG 60.814 66.667 0.00 0.00 0.00 3.60
240 241 1.740664 GACGGCGGGGAGAAGAAAC 60.741 63.158 13.24 0.00 0.00 2.78
241 242 1.477685 AAGACGGCGGGGAGAAGAAA 61.478 55.000 13.24 0.00 0.00 2.52
242 243 1.885163 GAAGACGGCGGGGAGAAGAA 61.885 60.000 13.24 0.00 0.00 2.52
243 244 2.283676 AAGACGGCGGGGAGAAGA 60.284 61.111 13.24 0.00 0.00 2.87
244 245 1.889530 AAGAAGACGGCGGGGAGAAG 61.890 60.000 13.24 0.00 0.00 2.85
245 246 1.885163 GAAGAAGACGGCGGGGAGAA 61.885 60.000 13.24 0.00 0.00 2.87
246 247 2.283676 AAGAAGACGGCGGGGAGA 60.284 61.111 13.24 0.00 0.00 3.71
247 248 1.889530 AAGAAGAAGACGGCGGGGAG 61.890 60.000 13.24 0.00 0.00 4.30
248 249 1.477685 AAAGAAGAAGACGGCGGGGA 61.478 55.000 13.24 0.00 0.00 4.81
249 250 0.605589 AAAAGAAGAAGACGGCGGGG 60.606 55.000 13.24 0.00 0.00 5.73
250 251 1.197036 GAAAAAGAAGAAGACGGCGGG 59.803 52.381 13.24 0.00 0.00 6.13
251 252 2.143925 AGAAAAAGAAGAAGACGGCGG 58.856 47.619 13.24 0.00 0.00 6.13
252 253 3.495001 AGAAGAAAAAGAAGAAGACGGCG 59.505 43.478 4.80 4.80 0.00 6.46
253 254 5.697178 ACTAGAAGAAAAAGAAGAAGACGGC 59.303 40.000 0.00 0.00 0.00 5.68
254 255 7.542824 CCTACTAGAAGAAAAAGAAGAAGACGG 59.457 40.741 0.00 0.00 0.00 4.79
293 298 7.451877 GGGGAAAGGAGAAGAAAGACTTTTTAT 59.548 37.037 1.12 0.00 39.13 1.40
294 299 6.776116 GGGGAAAGGAGAAGAAAGACTTTTTA 59.224 38.462 1.12 0.00 39.13 1.52
304 309 3.561313 CGATTTGGGGGAAAGGAGAAGAA 60.561 47.826 0.00 0.00 0.00 2.52
308 313 1.663911 TCGATTTGGGGGAAAGGAGA 58.336 50.000 0.00 0.00 0.00 3.71
341 346 3.356529 AATCGCCATGGAGTTTCTTCT 57.643 42.857 18.40 0.00 0.00 2.85
348 353 1.004745 AGAACCAAATCGCCATGGAGT 59.995 47.619 18.40 0.00 39.12 3.85
349 354 1.755179 AGAACCAAATCGCCATGGAG 58.245 50.000 18.40 13.80 39.12 3.86
372 387 0.326713 GGGAGGGGAAGACCTAGCTT 60.327 60.000 0.00 0.00 42.10 3.74
373 388 1.315216 GGGAGGGGAAGACCTAGCT 59.685 63.158 0.00 0.00 42.10 3.32
374 389 2.134933 CGGGAGGGGAAGACCTAGC 61.135 68.421 0.00 0.00 42.10 3.42
375 390 0.188834 ATCGGGAGGGGAAGACCTAG 59.811 60.000 0.00 0.00 42.10 3.02
376 391 0.640495 AATCGGGAGGGGAAGACCTA 59.360 55.000 0.00 0.00 42.10 3.08
377 392 0.640495 TAATCGGGAGGGGAAGACCT 59.360 55.000 0.00 0.00 45.57 3.85
378 393 1.730851 ATAATCGGGAGGGGAAGACC 58.269 55.000 0.00 0.00 39.11 3.85
379 394 2.038689 GGAATAATCGGGAGGGGAAGAC 59.961 54.545 0.00 0.00 0.00 3.01
380 395 2.335933 GGAATAATCGGGAGGGGAAGA 58.664 52.381 0.00 0.00 0.00 2.87
381 396 1.351350 GGGAATAATCGGGAGGGGAAG 59.649 57.143 0.00 0.00 0.00 3.46
382 397 1.441695 GGGAATAATCGGGAGGGGAA 58.558 55.000 0.00 0.00 0.00 3.97
383 398 0.475048 GGGGAATAATCGGGAGGGGA 60.475 60.000 0.00 0.00 0.00 4.81
384 399 0.475828 AGGGGAATAATCGGGAGGGG 60.476 60.000 0.00 0.00 0.00 4.79
387 402 2.339769 AGGAAGGGGAATAATCGGGAG 58.660 52.381 0.00 0.00 0.00 4.30
420 435 2.586079 CGATGTAGCAGCCGGTGG 60.586 66.667 1.90 0.00 0.00 4.61
422 437 2.284798 CTGTCGATGTAGCAGCCGGT 62.285 60.000 1.90 0.00 0.00 5.28
432 450 0.534412 CAGGAAGGCTCTGTCGATGT 59.466 55.000 0.00 0.00 0.00 3.06
433 451 0.809241 GCAGGAAGGCTCTGTCGATG 60.809 60.000 5.26 0.00 34.89 3.84
434 452 1.519719 GCAGGAAGGCTCTGTCGAT 59.480 57.895 5.26 0.00 34.89 3.59
435 453 2.973899 GCAGGAAGGCTCTGTCGA 59.026 61.111 5.26 0.00 34.89 4.20
436 454 2.507992 CGCAGGAAGGCTCTGTCG 60.508 66.667 5.26 5.65 34.89 4.35
437 455 1.446966 GTCGCAGGAAGGCTCTGTC 60.447 63.158 5.26 0.00 34.89 3.51
438 456 1.476007 AAGTCGCAGGAAGGCTCTGT 61.476 55.000 5.26 0.00 34.89 3.41
440 458 1.594310 GAAGTCGCAGGAAGGCTCT 59.406 57.895 0.00 0.00 0.00 4.09
441 459 1.448717 GGAAGTCGCAGGAAGGCTC 60.449 63.158 0.00 0.00 0.00 4.70
443 461 2.436824 GGGAAGTCGCAGGAAGGC 60.437 66.667 0.00 0.00 0.00 4.35
445 463 2.125512 CCGGGAAGTCGCAGGAAG 60.126 66.667 0.00 0.00 0.00 3.46
446 464 4.388499 GCCGGGAAGTCGCAGGAA 62.388 66.667 2.18 0.00 0.00 3.36
465 483 4.619140 GCAGATTGGATGCGCGGC 62.619 66.667 8.83 0.00 33.31 6.53
466 484 3.204119 TGCAGATTGGATGCGCGG 61.204 61.111 8.83 0.00 46.87 6.46
467 485 2.023741 GTGCAGATTGGATGCGCG 59.976 61.111 0.00 0.00 46.87 6.86
468 486 2.023741 CGTGCAGATTGGATGCGC 59.976 61.111 0.00 0.00 46.87 6.09
469 487 2.023741 GCGTGCAGATTGGATGCG 59.976 61.111 0.00 0.00 46.87 4.73
471 489 1.769098 CTCGGCGTGCAGATTGGATG 61.769 60.000 6.85 0.00 0.00 3.51
472 490 1.522355 CTCGGCGTGCAGATTGGAT 60.522 57.895 6.85 0.00 0.00 3.41
488 506 2.190488 CTCCAGTCCCTTGGCCACTC 62.190 65.000 3.88 0.00 38.16 3.51
489 507 2.121963 TCCAGTCCCTTGGCCACT 60.122 61.111 3.88 0.00 38.16 4.00
493 526 2.993853 CTCCTCCAGTCCCTTGGC 59.006 66.667 0.00 0.00 38.16 4.52
500 533 2.300437 AGTACTTGTTGCTCCTCCAGTC 59.700 50.000 0.00 0.00 0.00 3.51
501 534 2.330216 AGTACTTGTTGCTCCTCCAGT 58.670 47.619 0.00 0.00 0.00 4.00
502 535 3.409026 AAGTACTTGTTGCTCCTCCAG 57.591 47.619 7.48 0.00 0.00 3.86
503 536 3.007614 GGTAAGTACTTGTTGCTCCTCCA 59.992 47.826 18.56 0.00 0.00 3.86
510 543 6.077838 CGATTGAAAGGTAAGTACTTGTTGC 58.922 40.000 18.56 8.07 0.00 4.17
512 545 5.180680 GCCGATTGAAAGGTAAGTACTTGTT 59.819 40.000 18.56 6.17 0.00 2.83
514 547 4.201685 CGCCGATTGAAAGGTAAGTACTTG 60.202 45.833 18.56 0.00 0.00 3.16
515 548 3.930848 CGCCGATTGAAAGGTAAGTACTT 59.069 43.478 13.68 13.68 0.00 2.24
516 549 3.518590 CGCCGATTGAAAGGTAAGTACT 58.481 45.455 0.00 0.00 0.00 2.73
517 550 2.030091 GCGCCGATTGAAAGGTAAGTAC 59.970 50.000 0.00 0.00 0.00 2.73
518 551 2.273557 GCGCCGATTGAAAGGTAAGTA 58.726 47.619 0.00 0.00 0.00 2.24
519 552 1.084289 GCGCCGATTGAAAGGTAAGT 58.916 50.000 0.00 0.00 0.00 2.24
520 553 1.083489 TGCGCCGATTGAAAGGTAAG 58.917 50.000 4.18 0.00 0.00 2.34
521 554 1.524848 TTGCGCCGATTGAAAGGTAA 58.475 45.000 4.18 0.00 0.00 2.85
522 555 1.668751 GATTGCGCCGATTGAAAGGTA 59.331 47.619 4.18 0.00 0.00 3.08
524 557 0.451383 TGATTGCGCCGATTGAAAGG 59.549 50.000 4.18 0.00 0.00 3.11
526 559 1.135431 CCTTGATTGCGCCGATTGAAA 60.135 47.619 4.18 0.00 0.00 2.69
527 560 0.451383 CCTTGATTGCGCCGATTGAA 59.549 50.000 4.18 0.00 0.00 2.69
528 561 0.676466 ACCTTGATTGCGCCGATTGA 60.676 50.000 4.18 0.00 0.00 2.57
530 563 1.603802 CATACCTTGATTGCGCCGATT 59.396 47.619 4.18 0.00 0.00 3.34
531 564 1.229428 CATACCTTGATTGCGCCGAT 58.771 50.000 4.18 0.00 0.00 4.18
532 565 0.107897 ACATACCTTGATTGCGCCGA 60.108 50.000 4.18 0.00 0.00 5.54
533 566 1.577468 TACATACCTTGATTGCGCCG 58.423 50.000 4.18 0.00 0.00 6.46
534 567 2.350772 GCATACATACCTTGATTGCGCC 60.351 50.000 4.18 0.00 30.99 6.53
535 568 2.549754 AGCATACATACCTTGATTGCGC 59.450 45.455 0.00 0.00 39.82 6.09
592 637 3.468552 ACTAGTGTAGTGGTGGCCA 57.531 52.632 0.00 0.00 37.69 5.36
600 645 5.994887 CTAGCGAGAATCACTAGTGTAGT 57.005 43.478 21.99 8.67 41.68 2.73
609 654 2.568696 TCTGCACTAGCGAGAATCAC 57.431 50.000 0.00 0.00 46.23 3.06
617 662 1.601903 TGTTTGGTTTCTGCACTAGCG 59.398 47.619 0.00 0.00 46.23 4.26
618 663 3.004734 ACATGTTTGGTTTCTGCACTAGC 59.995 43.478 0.00 0.00 42.57 3.42
623 668 4.203226 TCTGTACATGTTTGGTTTCTGCA 58.797 39.130 2.30 0.00 0.00 4.41
627 676 8.696410 TTTCTTTTCTGTACATGTTTGGTTTC 57.304 30.769 2.30 0.00 0.00 2.78
655 704 0.465287 CAACCCAGCTGCAGGTTTTT 59.535 50.000 20.87 6.63 43.98 1.94
656 705 0.687427 ACAACCCAGCTGCAGGTTTT 60.687 50.000 20.87 14.22 43.98 2.43
657 706 0.687427 AACAACCCAGCTGCAGGTTT 60.687 50.000 20.87 5.50 43.98 3.27
659 708 0.405585 ATAACAACCCAGCTGCAGGT 59.594 50.000 13.85 13.85 38.27 4.00
662 711 1.993956 ACAATAACAACCCAGCTGCA 58.006 45.000 8.66 0.00 0.00 4.41
663 712 2.035832 ACAACAATAACAACCCAGCTGC 59.964 45.455 8.66 0.00 0.00 5.25
664 713 4.320608 AACAACAATAACAACCCAGCTG 57.679 40.909 6.78 6.78 0.00 4.24
666 715 8.899771 AGTATATAACAACAATAACAACCCAGC 58.100 33.333 0.00 0.00 0.00 4.85
690 739 8.774183 AGGGATTATATGATACTCTCTCGTAGT 58.226 37.037 0.00 0.00 0.00 2.73
691 740 9.621629 AAGGGATTATATGATACTCTCTCGTAG 57.378 37.037 0.00 0.00 0.00 3.51
692 741 9.397280 CAAGGGATTATATGATACTCTCTCGTA 57.603 37.037 0.00 0.00 0.00 3.43
693 742 7.147983 GCAAGGGATTATATGATACTCTCTCGT 60.148 40.741 0.00 0.00 0.00 4.18
697 746 7.271511 CAGGCAAGGGATTATATGATACTCTC 58.728 42.308 0.00 0.00 0.00 3.20
698 747 6.352565 GCAGGCAAGGGATTATATGATACTCT 60.353 42.308 0.00 0.00 0.00 3.24
699 748 5.819901 GCAGGCAAGGGATTATATGATACTC 59.180 44.000 0.00 0.00 0.00 2.59
700 749 5.251468 TGCAGGCAAGGGATTATATGATACT 59.749 40.000 0.00 0.00 0.00 2.12
701 750 5.500234 TGCAGGCAAGGGATTATATGATAC 58.500 41.667 0.00 0.00 0.00 2.24
702 751 5.251468 ACTGCAGGCAAGGGATTATATGATA 59.749 40.000 19.93 0.00 0.00 2.15
703 752 4.043812 ACTGCAGGCAAGGGATTATATGAT 59.956 41.667 19.93 0.00 0.00 2.45
704 753 3.395607 ACTGCAGGCAAGGGATTATATGA 59.604 43.478 19.93 0.00 0.00 2.15
705 754 3.759581 ACTGCAGGCAAGGGATTATATG 58.240 45.455 19.93 0.00 0.00 1.78
706 755 4.459852 AACTGCAGGCAAGGGATTATAT 57.540 40.909 19.93 0.00 0.00 0.86
707 756 3.951563 AACTGCAGGCAAGGGATTATA 57.048 42.857 19.93 0.00 0.00 0.98
708 757 2.834638 AACTGCAGGCAAGGGATTAT 57.165 45.000 19.93 0.00 0.00 1.28
709 758 2.603075 AAACTGCAGGCAAGGGATTA 57.397 45.000 19.93 0.00 0.00 1.75
710 759 1.720781 AAAACTGCAGGCAAGGGATT 58.279 45.000 19.93 0.00 0.00 3.01
711 760 1.345415 CAAAAACTGCAGGCAAGGGAT 59.655 47.619 19.93 0.00 0.00 3.85
712 761 0.752054 CAAAAACTGCAGGCAAGGGA 59.248 50.000 19.93 0.00 0.00 4.20
717 766 1.397672 TGCTACAAAAACTGCAGGCA 58.602 45.000 19.93 12.20 0.00 4.75
718 767 2.229784 AGATGCTACAAAAACTGCAGGC 59.770 45.455 19.93 9.51 38.87 4.85
746 795 8.117988 TCTTCGTGTGATTGTTGTTAAGTAAAC 58.882 33.333 0.00 0.00 38.67 2.01
747 796 8.199176 TCTTCGTGTGATTGTTGTTAAGTAAA 57.801 30.769 0.00 0.00 0.00 2.01
750 799 6.537301 TCTTCTTCGTGTGATTGTTGTTAAGT 59.463 34.615 0.00 0.00 0.00 2.24
751 800 6.943981 TCTTCTTCGTGTGATTGTTGTTAAG 58.056 36.000 0.00 0.00 0.00 1.85
752 801 6.912203 TCTTCTTCGTGTGATTGTTGTTAA 57.088 33.333 0.00 0.00 0.00 2.01
753 802 6.704050 TCATCTTCTTCGTGTGATTGTTGTTA 59.296 34.615 0.00 0.00 0.00 2.41
754 803 5.527214 TCATCTTCTTCGTGTGATTGTTGTT 59.473 36.000 0.00 0.00 0.00 2.83
755 804 5.050091 GTCATCTTCTTCGTGTGATTGTTGT 60.050 40.000 0.00 0.00 0.00 3.32
756 805 5.178252 AGTCATCTTCTTCGTGTGATTGTTG 59.822 40.000 0.00 0.00 0.00 3.33
757 806 5.300752 AGTCATCTTCTTCGTGTGATTGTT 58.699 37.500 0.00 0.00 0.00 2.83
758 807 4.887748 AGTCATCTTCTTCGTGTGATTGT 58.112 39.130 0.00 0.00 0.00 2.71
761 810 6.867550 TCAATAGTCATCTTCTTCGTGTGAT 58.132 36.000 0.00 0.00 0.00 3.06
762 811 6.267496 TCAATAGTCATCTTCTTCGTGTGA 57.733 37.500 0.00 0.00 0.00 3.58
763 812 6.753744 TGATCAATAGTCATCTTCTTCGTGTG 59.246 38.462 0.00 0.00 0.00 3.82
764 813 6.867550 TGATCAATAGTCATCTTCTTCGTGT 58.132 36.000 0.00 0.00 0.00 4.49
767 816 6.073873 GCCTTGATCAATAGTCATCTTCTTCG 60.074 42.308 8.96 0.00 0.00 3.79
768 817 6.765036 TGCCTTGATCAATAGTCATCTTCTTC 59.235 38.462 8.96 0.00 0.00 2.87
798 867 7.928706 GGATGAGCACAGTTAACTATCACTATT 59.071 37.037 8.04 0.00 0.00 1.73
804 873 4.101741 AGGGGATGAGCACAGTTAACTATC 59.898 45.833 8.04 6.53 0.00 2.08
809 878 2.265367 TCAGGGGATGAGCACAGTTAA 58.735 47.619 0.00 0.00 32.77 2.01
824 894 3.130633 TCGCGTTAAATGATCATCAGGG 58.869 45.455 9.06 7.45 0.00 4.45
836 925 6.578020 AGTTTATCGATGATTCGCGTTAAA 57.422 33.333 8.54 0.00 45.10 1.52
838 927 6.576313 GTCTAGTTTATCGATGATTCGCGTTA 59.424 38.462 8.54 0.00 45.10 3.18
842 931 6.936222 ATGTCTAGTTTATCGATGATTCGC 57.064 37.500 8.54 0.00 45.10 4.70
843 932 9.268255 GTCTATGTCTAGTTTATCGATGATTCG 57.732 37.037 8.54 0.00 46.87 3.34
874 963 8.701895 CCCAACACTTTTAGATAGGAGTACATA 58.298 37.037 0.00 0.00 0.00 2.29
875 964 7.565680 CCCAACACTTTTAGATAGGAGTACAT 58.434 38.462 0.00 0.00 0.00 2.29
876 965 6.575649 GCCCAACACTTTTAGATAGGAGTACA 60.576 42.308 0.00 0.00 0.00 2.90
877 966 5.816258 GCCCAACACTTTTAGATAGGAGTAC 59.184 44.000 0.00 0.00 0.00 2.73
878 967 5.486063 TGCCCAACACTTTTAGATAGGAGTA 59.514 40.000 0.00 0.00 0.00 2.59
880 969 4.843728 TGCCCAACACTTTTAGATAGGAG 58.156 43.478 0.00 0.00 0.00 3.69
881 970 4.288626 ACTGCCCAACACTTTTAGATAGGA 59.711 41.667 0.00 0.00 0.00 2.94
882 971 4.589908 ACTGCCCAACACTTTTAGATAGG 58.410 43.478 0.00 0.00 0.00 2.57
883 972 5.245531 TGACTGCCCAACACTTTTAGATAG 58.754 41.667 0.00 0.00 0.00 2.08
884 973 5.221843 ACTGACTGCCCAACACTTTTAGATA 60.222 40.000 0.00 0.00 0.00 1.98
885 974 4.074970 CTGACTGCCCAACACTTTTAGAT 58.925 43.478 0.00 0.00 0.00 1.98
886 975 3.118038 ACTGACTGCCCAACACTTTTAGA 60.118 43.478 0.00 0.00 0.00 2.10
888 977 3.211045 GACTGACTGCCCAACACTTTTA 58.789 45.455 0.00 0.00 0.00 1.52
889 978 2.024414 GACTGACTGCCCAACACTTTT 58.976 47.619 0.00 0.00 0.00 2.27
890 979 1.064758 TGACTGACTGCCCAACACTTT 60.065 47.619 0.00 0.00 0.00 2.66
891 980 0.546122 TGACTGACTGCCCAACACTT 59.454 50.000 0.00 0.00 0.00 3.16
895 984 0.607489 AGCATGACTGACTGCCCAAC 60.607 55.000 0.00 0.00 39.22 3.77
908 997 4.341366 TCTTGTCTGAAACAGAGCATGA 57.659 40.909 0.00 8.13 41.46 3.07
909 998 4.753610 TCTTCTTGTCTGAAACAGAGCATG 59.246 41.667 1.53 0.00 41.46 4.06
910 999 4.965814 TCTTCTTGTCTGAAACAGAGCAT 58.034 39.130 1.53 0.00 41.46 3.79
911 1000 4.406648 TCTTCTTGTCTGAAACAGAGCA 57.593 40.909 1.53 1.82 41.46 4.26
912 1001 6.019961 CGATATCTTCTTGTCTGAAACAGAGC 60.020 42.308 0.34 0.00 41.46 4.09
913 1002 7.032580 ACGATATCTTCTTGTCTGAAACAGAG 58.967 38.462 0.34 0.00 41.46 3.35
914 1003 6.925211 ACGATATCTTCTTGTCTGAAACAGA 58.075 36.000 0.34 0.00 39.58 3.41
915 1004 7.116948 ACAACGATATCTTCTTGTCTGAAACAG 59.883 37.037 0.34 0.00 39.58 3.16
916 1005 6.929049 ACAACGATATCTTCTTGTCTGAAACA 59.071 34.615 0.34 0.00 35.59 2.83
936 1056 7.082820 TTAGGAATCTAACAAGCGCACAACG 62.083 44.000 11.47 0.00 36.31 4.10
938 1058 2.778299 AGGAATCTAACAAGCGCACAA 58.222 42.857 11.47 0.00 0.00 3.33
942 1062 4.270325 ACGAATTAGGAATCTAACAAGCGC 59.730 41.667 0.00 0.00 38.19 5.92
943 1063 5.968387 ACGAATTAGGAATCTAACAAGCG 57.032 39.130 0.00 0.00 38.19 4.68
945 1065 6.534079 ACCGAACGAATTAGGAATCTAACAAG 59.466 38.462 0.00 0.00 38.19 3.16
946 1066 6.311935 CACCGAACGAATTAGGAATCTAACAA 59.688 38.462 0.00 0.00 38.19 2.83
947 1067 5.808540 CACCGAACGAATTAGGAATCTAACA 59.191 40.000 0.00 0.00 38.19 2.41
948 1068 6.038356 TCACCGAACGAATTAGGAATCTAAC 58.962 40.000 0.00 0.00 38.19 2.34
965 1085 0.746563 GGCCAATCCGATTCACCGAA 60.747 55.000 0.00 0.00 0.00 4.30
967 1087 3.420943 GGCCAATCCGATTCACCG 58.579 61.111 0.00 0.00 0.00 4.94
983 1103 1.274728 CCATCTATCTCCTTCCTGCGG 59.725 57.143 0.00 0.00 0.00 5.69
988 1113 4.906747 ATTCTGCCATCTATCTCCTTCC 57.093 45.455 0.00 0.00 0.00 3.46
990 1115 4.414846 ACCAATTCTGCCATCTATCTCCTT 59.585 41.667 0.00 0.00 0.00 3.36
1107 1244 8.720562 AGCAAATTAAATAATTGTGCTTGGTTC 58.279 29.630 18.88 0.23 41.51 3.62
1110 1247 8.938906 AGAAGCAAATTAAATAATTGTGCTTGG 58.061 29.630 28.47 9.27 45.82 3.61
1123 1260 6.265196 TCAGCAAGGAAGAGAAGCAAATTAAA 59.735 34.615 0.00 0.00 0.00 1.52
1188 1333 9.561069 TTAGGTTCCTATTGATTGATTAAGCTC 57.439 33.333 0.00 0.00 0.00 4.09
1201 1346 9.238368 TCCAACATTAAACTTAGGTTCCTATTG 57.762 33.333 0.00 0.00 34.14 1.90
1211 1358 6.381801 CCAAGCAGTCCAACATTAAACTTAG 58.618 40.000 0.00 0.00 0.00 2.18
1214 1361 3.573967 CCCAAGCAGTCCAACATTAAACT 59.426 43.478 0.00 0.00 0.00 2.66
1215 1362 3.306019 CCCCAAGCAGTCCAACATTAAAC 60.306 47.826 0.00 0.00 0.00 2.01
1217 1364 2.109128 TCCCCAAGCAGTCCAACATTAA 59.891 45.455 0.00 0.00 0.00 1.40
1218 1365 1.707989 TCCCCAAGCAGTCCAACATTA 59.292 47.619 0.00 0.00 0.00 1.90
1231 1392 2.755103 GTTTTAGCCTGACATCCCCAAG 59.245 50.000 0.00 0.00 0.00 3.61
1244 1405 3.234386 CGCAGCTAGTTTTGTTTTAGCC 58.766 45.455 0.00 0.00 40.44 3.93
1252 1413 1.873591 ACAAGTCCGCAGCTAGTTTTG 59.126 47.619 0.00 0.00 0.00 2.44
1253 1414 2.256117 ACAAGTCCGCAGCTAGTTTT 57.744 45.000 0.00 0.00 0.00 2.43
1263 1443 8.784043 AGATTGGATAATTAATTACAAGTCCGC 58.216 33.333 10.07 7.21 0.00 5.54
1271 1451 8.774586 ACGTGCTCAGATTGGATAATTAATTAC 58.225 33.333 10.07 4.99 0.00 1.89
1272 1452 8.902540 ACGTGCTCAGATTGGATAATTAATTA 57.097 30.769 10.27 10.27 0.00 1.40
1277 1457 5.882557 AGAAACGTGCTCAGATTGGATAATT 59.117 36.000 0.00 0.00 0.00 1.40
1278 1458 5.295292 CAGAAACGTGCTCAGATTGGATAAT 59.705 40.000 0.00 0.00 0.00 1.28
1288 1495 3.381045 TCAACTACAGAAACGTGCTCAG 58.619 45.455 0.00 0.00 0.00 3.35
1293 1500 5.233476 TGCTAAACTCAACTACAGAAACGTG 59.767 40.000 0.00 0.00 0.00 4.49
1340 1566 7.490000 ACTCGTATATTTGTTTACAGAGGGAG 58.510 38.462 0.00 0.00 0.00 4.30
1341 1567 7.414222 ACTCGTATATTTGTTTACAGAGGGA 57.586 36.000 0.00 0.00 0.00 4.20
1342 1568 9.245962 CTAACTCGTATATTTGTTTACAGAGGG 57.754 37.037 0.00 0.00 0.00 4.30
1343 1569 9.798994 ACTAACTCGTATATTTGTTTACAGAGG 57.201 33.333 0.00 0.00 0.00 3.69
1354 1580 9.178427 GCGTTTAGATCACTAACTCGTATATTT 57.822 33.333 0.00 0.00 38.18 1.40
1355 1581 8.566260 AGCGTTTAGATCACTAACTCGTATATT 58.434 33.333 0.00 0.00 38.18 1.28
1356 1582 8.097078 AGCGTTTAGATCACTAACTCGTATAT 57.903 34.615 0.00 0.00 38.18 0.86
1357 1583 7.440556 AGAGCGTTTAGATCACTAACTCGTATA 59.559 37.037 0.00 0.00 38.18 1.47
1358 1584 6.260493 AGAGCGTTTAGATCACTAACTCGTAT 59.740 38.462 0.00 0.00 38.18 3.06
1359 1585 5.583854 AGAGCGTTTAGATCACTAACTCGTA 59.416 40.000 0.00 0.00 38.18 3.43
1360 1586 4.395542 AGAGCGTTTAGATCACTAACTCGT 59.604 41.667 0.00 0.00 38.18 4.18
1361 1587 4.911053 AGAGCGTTTAGATCACTAACTCG 58.089 43.478 0.00 0.00 38.18 4.18
1362 1588 9.947669 TTATAAGAGCGTTTAGATCACTAACTC 57.052 33.333 0.00 0.00 38.18 3.01
1367 1593 9.654663 AACTTTTATAAGAGCGTTTAGATCACT 57.345 29.630 3.00 0.00 37.82 3.41
1375 1601 8.718734 CCTCTGTAAACTTTTATAAGAGCGTTT 58.281 33.333 13.76 6.02 36.27 3.60
1376 1602 7.333672 CCCTCTGTAAACTTTTATAAGAGCGTT 59.666 37.037 13.76 1.38 36.27 4.84
1377 1603 6.817140 CCCTCTGTAAACTTTTATAAGAGCGT 59.183 38.462 13.76 0.00 36.27 5.07
1378 1604 7.039882 TCCCTCTGTAAACTTTTATAAGAGCG 58.960 38.462 13.76 9.07 36.27 5.03
1379 1605 8.041919 ACTCCCTCTGTAAACTTTTATAAGAGC 58.958 37.037 13.76 0.00 36.27 4.09
1387 1613 8.832735 TCCAATATACTCCCTCTGTAAACTTTT 58.167 33.333 0.00 0.00 0.00 2.27
1388 1614 8.388656 TCCAATATACTCCCTCTGTAAACTTT 57.611 34.615 0.00 0.00 0.00 2.66
1389 1615 7.624077 ACTCCAATATACTCCCTCTGTAAACTT 59.376 37.037 0.00 0.00 0.00 2.66
1390 1616 7.133483 ACTCCAATATACTCCCTCTGTAAACT 58.867 38.462 0.00 0.00 0.00 2.66
1391 1617 7.362802 ACTCCAATATACTCCCTCTGTAAAC 57.637 40.000 0.00 0.00 0.00 2.01
1392 1618 7.989947 AACTCCAATATACTCCCTCTGTAAA 57.010 36.000 0.00 0.00 0.00 2.01
1393 1619 7.622081 TGAAACTCCAATATACTCCCTCTGTAA 59.378 37.037 0.00 0.00 0.00 2.41
1394 1620 7.130099 TGAAACTCCAATATACTCCCTCTGTA 58.870 38.462 0.00 0.00 0.00 2.74
1395 1621 5.964477 TGAAACTCCAATATACTCCCTCTGT 59.036 40.000 0.00 0.00 0.00 3.41
1396 1622 6.325028 TCTGAAACTCCAATATACTCCCTCTG 59.675 42.308 0.00 0.00 0.00 3.35
1397 1623 6.444704 TCTGAAACTCCAATATACTCCCTCT 58.555 40.000 0.00 0.00 0.00 3.69
1398 1624 6.551601 TCTCTGAAACTCCAATATACTCCCTC 59.448 42.308 0.00 0.00 0.00 4.30
1399 1625 6.444704 TCTCTGAAACTCCAATATACTCCCT 58.555 40.000 0.00 0.00 0.00 4.20
1400 1626 6.732896 TCTCTGAAACTCCAATATACTCCC 57.267 41.667 0.00 0.00 0.00 4.30
1401 1627 8.861086 TGTATCTCTGAAACTCCAATATACTCC 58.139 37.037 0.00 0.00 0.00 3.85
1402 1628 9.685828 GTGTATCTCTGAAACTCCAATATACTC 57.314 37.037 0.00 0.00 0.00 2.59
1403 1629 9.427821 AGTGTATCTCTGAAACTCCAATATACT 57.572 33.333 0.00 0.00 0.00 2.12
1404 1630 9.469807 CAGTGTATCTCTGAAACTCCAATATAC 57.530 37.037 0.00 0.00 35.20 1.47
1405 1631 9.201989 ACAGTGTATCTCTGAAACTCCAATATA 57.798 33.333 0.00 0.00 36.81 0.86
1406 1632 7.984050 CACAGTGTATCTCTGAAACTCCAATAT 59.016 37.037 0.00 0.00 36.81 1.28
1407 1633 7.178451 TCACAGTGTATCTCTGAAACTCCAATA 59.822 37.037 0.00 0.00 36.81 1.90
1408 1634 6.014242 TCACAGTGTATCTCTGAAACTCCAAT 60.014 38.462 0.00 0.00 36.81 3.16
1409 1635 5.304357 TCACAGTGTATCTCTGAAACTCCAA 59.696 40.000 0.00 0.00 36.81 3.53
1422 1648 5.150683 GCGACAGATAGATCACAGTGTATC 58.849 45.833 0.00 1.26 0.00 2.24
1424 1650 3.945285 TGCGACAGATAGATCACAGTGTA 59.055 43.478 0.00 0.00 0.00 2.90
1425 1651 2.755103 TGCGACAGATAGATCACAGTGT 59.245 45.455 0.00 0.00 0.00 3.55
1445 1711 2.033757 AGCCTCCTGCAACTGCTG 59.966 61.111 2.95 2.36 44.83 4.41
1446 1712 2.033757 CAGCCTCCTGCAACTGCT 59.966 61.111 2.95 0.00 44.83 4.24
1447 1713 2.282040 ACAGCCTCCTGCAACTGC 60.282 61.111 0.00 0.00 43.02 4.40
1450 1716 0.607489 ATGTGACAGCCTCCTGCAAC 60.607 55.000 0.00 0.00 43.02 4.17
1451 1717 0.607217 CATGTGACAGCCTCCTGCAA 60.607 55.000 0.00 0.00 43.02 4.08
1452 1718 1.002990 CATGTGACAGCCTCCTGCA 60.003 57.895 0.00 0.00 43.02 4.41
1453 1719 0.250234 TACATGTGACAGCCTCCTGC 59.750 55.000 9.11 0.00 43.02 4.85
1454 1720 1.134580 CCTACATGTGACAGCCTCCTG 60.135 57.143 9.11 0.00 44.80 3.86
1455 1721 1.198713 CCTACATGTGACAGCCTCCT 58.801 55.000 9.11 0.00 0.00 3.69
1456 1722 1.137872 CTCCTACATGTGACAGCCTCC 59.862 57.143 9.11 0.00 0.00 4.30
1457 1723 1.472376 GCTCCTACATGTGACAGCCTC 60.472 57.143 9.11 0.00 0.00 4.70
1458 1724 0.539051 GCTCCTACATGTGACAGCCT 59.461 55.000 9.11 0.00 0.00 4.58
1459 1725 0.539051 AGCTCCTACATGTGACAGCC 59.461 55.000 9.11 0.00 0.00 4.85
1460 1726 1.472376 GGAGCTCCTACATGTGACAGC 60.472 57.143 26.25 12.15 0.00 4.40
1461 1727 1.827344 TGGAGCTCCTACATGTGACAG 59.173 52.381 32.28 1.98 36.82 3.51
1462 1728 1.937191 TGGAGCTCCTACATGTGACA 58.063 50.000 32.28 6.14 36.82 3.58
1463 1729 3.118629 TGAATGGAGCTCCTACATGTGAC 60.119 47.826 32.28 13.60 34.89 3.67
1464 1730 3.106827 TGAATGGAGCTCCTACATGTGA 58.893 45.455 32.28 11.02 34.89 3.58
1465 1731 3.133542 TCTGAATGGAGCTCCTACATGTG 59.866 47.826 32.28 16.18 34.89 3.21
1466 1732 3.378512 TCTGAATGGAGCTCCTACATGT 58.621 45.455 32.28 11.66 34.89 3.21
1467 1733 4.202336 ACATCTGAATGGAGCTCCTACATG 60.202 45.833 32.28 23.76 34.89 3.21
1468 1734 3.972638 ACATCTGAATGGAGCTCCTACAT 59.027 43.478 32.28 15.97 36.45 2.29
1469 1735 3.378512 ACATCTGAATGGAGCTCCTACA 58.621 45.455 32.28 24.93 37.19 2.74
1470 1736 3.551863 CGACATCTGAATGGAGCTCCTAC 60.552 52.174 32.28 22.10 37.19 3.18
1471 1737 2.625314 CGACATCTGAATGGAGCTCCTA 59.375 50.000 32.28 19.38 37.19 2.94
1472 1738 1.411977 CGACATCTGAATGGAGCTCCT 59.588 52.381 32.28 14.69 37.19 3.69
1473 1739 1.410517 TCGACATCTGAATGGAGCTCC 59.589 52.381 26.78 26.78 37.19 4.70
1474 1740 2.360483 TCTCGACATCTGAATGGAGCTC 59.640 50.000 4.71 4.71 37.19 4.09
1475 1741 2.100584 GTCTCGACATCTGAATGGAGCT 59.899 50.000 0.00 0.00 37.19 4.09
1476 1742 2.468831 GTCTCGACATCTGAATGGAGC 58.531 52.381 0.00 0.00 37.19 4.70
1477 1743 2.692557 AGGTCTCGACATCTGAATGGAG 59.307 50.000 0.00 0.00 37.19 3.86
1478 1744 2.690497 GAGGTCTCGACATCTGAATGGA 59.310 50.000 4.61 0.00 38.89 3.41
1479 1745 3.090952 GAGGTCTCGACATCTGAATGG 57.909 52.381 4.61 0.00 38.89 3.16
1523 1789 9.695526 CTCCAAACACAATCAAAATTGAGATAA 57.304 29.630 5.22 0.00 44.25 1.75
1604 1888 1.671742 GTGGGAGAAGAGGAACGCA 59.328 57.895 0.00 0.00 0.00 5.24
1745 2029 2.992847 TGTACTTCTGGGACTCCTCA 57.007 50.000 0.00 0.00 0.00 3.86
1827 3529 4.746115 CACACATGGTTGGTTGAATCTTTG 59.254 41.667 0.00 0.00 0.00 2.77
1909 3634 7.458409 CCAACAGACTGGTAGTAGTAGTTTA 57.542 40.000 7.51 0.00 30.98 2.01
2000 3728 5.221126 GCTCCCACACAAATGAGGATAATTC 60.221 44.000 0.00 0.00 38.80 2.17
2002 3730 4.210331 GCTCCCACACAAATGAGGATAAT 58.790 43.478 0.00 0.00 38.80 1.28
2005 3733 1.341383 GGCTCCCACACAAATGAGGAT 60.341 52.381 0.00 0.00 38.80 3.24
2007 3735 0.251297 TGGCTCCCACACAAATGAGG 60.251 55.000 0.00 0.00 36.39 3.86
2008 3736 1.843368 ATGGCTCCCACACAAATGAG 58.157 50.000 0.00 0.00 35.80 2.90
2049 3780 7.479352 TCATACATTGTCAAACCATCCATTT 57.521 32.000 0.00 0.00 0.00 2.32
2062 3793 9.023967 GCAAGGAAATACAAATCATACATTGTC 57.976 33.333 0.00 0.00 40.14 3.18
2075 3806 7.665559 ACAACTAATCTGAGCAAGGAAATACAA 59.334 33.333 0.00 0.00 0.00 2.41
2116 3847 5.945191 TGTCATGAGCCATCTGTTTATGAAA 59.055 36.000 0.00 0.00 0.00 2.69
2117 3848 5.499313 TGTCATGAGCCATCTGTTTATGAA 58.501 37.500 0.00 0.00 0.00 2.57
2118 3849 5.101648 TGTCATGAGCCATCTGTTTATGA 57.898 39.130 0.00 0.00 0.00 2.15
2119 3850 5.732528 GCTTGTCATGAGCCATCTGTTTATG 60.733 44.000 0.00 0.00 34.06 1.90
2120 3851 4.337555 GCTTGTCATGAGCCATCTGTTTAT 59.662 41.667 0.00 0.00 34.06 1.40
2121 3852 3.691118 GCTTGTCATGAGCCATCTGTTTA 59.309 43.478 0.00 0.00 34.06 2.01
2169 3904 8.423349 TGATGTTCCTGAATTTTGTTTTCATCT 58.577 29.630 0.00 0.00 32.94 2.90
2195 3930 9.490379 ACGAGTGTCTGATAGTATTTTTCTTTT 57.510 29.630 0.00 0.00 0.00 2.27
2196 3931 9.141400 GACGAGTGTCTGATAGTATTTTTCTTT 57.859 33.333 0.00 0.00 42.08 2.52
2217 3952 3.288809 TGATATGCGGAGAATGACGAG 57.711 47.619 0.00 0.00 0.00 4.18
2220 3955 5.106791 CCTGAATTGATATGCGGAGAATGAC 60.107 44.000 0.00 0.00 0.00 3.06
2229 3964 6.162079 AGAGATGTACCTGAATTGATATGCG 58.838 40.000 0.00 0.00 0.00 4.73
2296 4031 4.104102 TGGTCCAAGGACTCAAACTTGTAT 59.896 41.667 18.03 0.00 44.04 2.29
2359 4094 2.034179 GCGGGGATACAATTTTGTAGGC 59.966 50.000 8.90 4.14 45.80 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.