Multiple sequence alignment - TraesCS7A01G008500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G008500 chr7A 100.000 5532 0 0 1 5532 3845152 3839621 0.000000e+00 10216.0
1 TraesCS7A01G008500 chr7A 84.039 1936 267 25 2476 4390 2800443 2798529 0.000000e+00 1825.0
2 TraesCS7A01G008500 chr7A 81.079 1057 176 15 979 2013 2805906 2804852 0.000000e+00 822.0
3 TraesCS7A01G008500 chr7A 82.301 678 78 29 4879 5532 3801976 3801317 2.910000e-152 549.0
4 TraesCS7A01G008500 chr7A 87.019 416 35 9 5126 5532 2126311 2125906 8.450000e-123 451.0
5 TraesCS7A01G008500 chr7A 73.950 357 62 23 1921 2265 2687442 2687105 1.260000e-21 115.0
6 TraesCS7A01G008500 chr7D 95.622 2695 81 8 1897 4587 4009767 4007106 0.000000e+00 4289.0
7 TraesCS7A01G008500 chr7D 81.369 3505 569 65 979 4450 3552640 3549187 0.000000e+00 2778.0
8 TraesCS7A01G008500 chr7D 80.966 3541 577 74 979 4480 2904911 2901429 0.000000e+00 2715.0
9 TraesCS7A01G008500 chr7D 84.360 2078 263 32 2354 4380 3423787 3421721 0.000000e+00 1980.0
10 TraesCS7A01G008500 chr7D 81.410 2028 297 47 1823 3825 2687453 2685481 0.000000e+00 1583.0
11 TraesCS7A01G008500 chr7D 95.613 889 38 1 977 1865 4010595 4009708 0.000000e+00 1424.0
12 TraesCS7A01G008500 chr7D 92.012 964 49 17 4588 5532 4007007 4006053 0.000000e+00 1328.0
13 TraesCS7A01G008500 chr7D 85.169 708 52 27 4844 5532 3421365 3420692 0.000000e+00 676.0
14 TraesCS7A01G008500 chr7D 92.575 431 13 7 4 428 4011755 4011338 7.930000e-168 601.0
15 TraesCS7A01G008500 chr7D 82.805 442 42 23 4844 5263 2678605 2678176 1.130000e-96 364.0
16 TraesCS7A01G008500 chr7D 93.706 143 8 1 756 898 4010737 4010596 4.340000e-51 213.0
17 TraesCS7A01G008500 chr7D 95.726 117 4 1 493 609 4011334 4011219 2.630000e-43 187.0
18 TraesCS7A01G008500 chr7D 100.000 33 0 0 659 691 4010763 4010731 1.660000e-05 62.1
19 TraesCS7A01G008500 chr4A 87.172 3656 360 63 958 4568 739605557 739609148 0.000000e+00 4052.0
20 TraesCS7A01G008500 chr4A 84.671 3438 445 60 962 4368 742161124 742157738 0.000000e+00 3354.0
21 TraesCS7A01G008500 chr4A 84.713 3310 382 73 1457 4711 740494224 740497464 0.000000e+00 3195.0
22 TraesCS7A01G008500 chr4A 87.949 2755 262 35 1206 3922 740150804 740148082 0.000000e+00 3184.0
23 TraesCS7A01G008500 chr4A 85.871 2272 260 33 2126 4384 740122897 740120674 0.000000e+00 2361.0
24 TraesCS7A01G008500 chr4A 87.653 2041 227 20 2338 4371 742021130 742023152 0.000000e+00 2350.0
25 TraesCS7A01G008500 chr4A 84.653 2020 255 31 2470 4458 739886463 739888458 0.000000e+00 1962.0
26 TraesCS7A01G008500 chr4A 83.205 1560 205 37 3161 4696 741505836 741504310 0.000000e+00 1376.0
27 TraesCS7A01G008500 chr4A 87.719 1083 88 24 4476 5532 733821805 733822868 0.000000e+00 1221.0
28 TraesCS7A01G008500 chr4A 88.828 913 87 9 958 1855 742019768 742020680 0.000000e+00 1107.0
29 TraesCS7A01G008500 chr4A 86.145 1061 104 23 958 1979 740124065 740123009 0.000000e+00 1105.0
30 TraesCS7A01G008500 chr4A 87.449 733 53 22 4825 5532 742023256 742023974 0.000000e+00 808.0
31 TraesCS7A01G008500 chr4A 85.994 714 65 21 4844 5532 739609281 739609984 0.000000e+00 732.0
32 TraesCS7A01G008500 chr4A 87.822 583 31 23 4976 5532 740134389 740133821 0.000000e+00 647.0
33 TraesCS7A01G008500 chr4A 83.262 705 74 28 4844 5532 733984227 733983551 4.740000e-170 608.0
34 TraesCS7A01G008500 chr4A 82.296 723 75 34 4844 5532 740497462 740498165 1.340000e-160 577.0
35 TraesCS7A01G008500 chr4A 80.617 681 86 27 4883 5532 741504309 741503644 8.330000e-133 484.0
36 TraesCS7A01G008500 chr4A 82.302 582 62 20 4844 5409 740120253 740119697 3.020000e-127 466.0
37 TraesCS7A01G008500 chr4A 79.118 431 52 25 4844 5247 733808354 733808773 4.250000e-66 263.0
38 TraesCS7A01G008500 chr4A 78.868 265 28 10 1 256 739990062 739989817 2.670000e-33 154.0
39 TraesCS7A01G008500 chr4A 74.924 331 44 21 4399 4716 740120550 740120246 1.260000e-21 115.0
40 TraesCS7A01G008500 chr4A 94.118 51 3 0 4722 4772 722907529 722907479 1.650000e-10 78.7
41 TraesCS7A01G008500 chr4A 81.818 99 8 6 142 236 733826675 733826583 2.140000e-09 75.0
42 TraesCS7A01G008500 chr1D 82.222 2070 316 40 2320 4371 464795416 464797451 0.000000e+00 1736.0
43 TraesCS7A01G008500 chr3A 97.531 81 2 0 314 394 99426270 99426190 7.470000e-29 139.0
44 TraesCS7A01G008500 chr3A 96.491 57 2 0 4717 4773 531961386 531961442 1.640000e-15 95.3
45 TraesCS7A01G008500 chrUn 89.091 110 9 3 310 419 287061832 287061726 3.480000e-27 134.0
46 TraesCS7A01G008500 chr3D 93.478 92 3 3 308 396 149291980 149292071 3.480000e-27 134.0
47 TraesCS7A01G008500 chr3D 89.091 110 9 3 310 419 570116478 570116372 3.480000e-27 134.0
48 TraesCS7A01G008500 chr1B 93.407 91 3 2 315 405 593927161 593927074 1.250000e-26 132.0
49 TraesCS7A01G008500 chr1B 96.491 57 2 0 4717 4773 40362508 40362452 1.640000e-15 95.3
50 TraesCS7A01G008500 chr1B 76.263 198 29 11 710 889 2921420 2921223 7.630000e-14 89.8
51 TraesCS7A01G008500 chr5B 94.186 86 4 1 310 395 13722193 13722277 4.500000e-26 130.0
52 TraesCS7A01G008500 chr3B 91.579 95 7 1 308 402 621537376 621537469 4.500000e-26 130.0
53 TraesCS7A01G008500 chr2D 87.736 106 11 2 315 419 379699523 379699419 7.530000e-24 122.0
54 TraesCS7A01G008500 chr2D 96.491 57 2 0 4717 4773 634297814 634297870 1.640000e-15 95.3
55 TraesCS7A01G008500 chr1A 83.871 93 12 2 677 769 589109287 589109376 9.870000e-13 86.1
56 TraesCS7A01G008500 chr1A 95.652 46 2 0 4728 4773 494803587 494803632 2.140000e-09 75.0
57 TraesCS7A01G008500 chr6A 92.982 57 4 0 4717 4773 8341464 8341520 3.550000e-12 84.2
58 TraesCS7A01G008500 chr2B 91.525 59 4 1 4716 4773 790879219 790879161 4.590000e-11 80.5
59 TraesCS7A01G008500 chr6D 84.337 83 8 3 696 773 469795459 469795541 5.940000e-10 76.8
60 TraesCS7A01G008500 chr7B 91.071 56 3 1 4717 4770 387670714 387670769 2.140000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G008500 chr7A 3839621 3845152 5531 True 10216.000000 10216 100.000000 1 5532 1 chr7A.!!$R6 5531
1 TraesCS7A01G008500 chr7A 2798529 2800443 1914 True 1825.000000 1825 84.039000 2476 4390 1 chr7A.!!$R3 1914
2 TraesCS7A01G008500 chr7A 2804852 2805906 1054 True 822.000000 822 81.079000 979 2013 1 chr7A.!!$R4 1034
3 TraesCS7A01G008500 chr7A 3801317 3801976 659 True 549.000000 549 82.301000 4879 5532 1 chr7A.!!$R5 653
4 TraesCS7A01G008500 chr7D 3549187 3552640 3453 True 2778.000000 2778 81.369000 979 4450 1 chr7D.!!$R4 3471
5 TraesCS7A01G008500 chr7D 2901429 2904911 3482 True 2715.000000 2715 80.966000 979 4480 1 chr7D.!!$R3 3501
6 TraesCS7A01G008500 chr7D 2685481 2687453 1972 True 1583.000000 1583 81.410000 1823 3825 1 chr7D.!!$R2 2002
7 TraesCS7A01G008500 chr7D 3420692 3423787 3095 True 1328.000000 1980 84.764500 2354 5532 2 chr7D.!!$R5 3178
8 TraesCS7A01G008500 chr7D 4006053 4011755 5702 True 1157.728571 4289 95.036286 4 5532 7 chr7D.!!$R6 5528
9 TraesCS7A01G008500 chr4A 742157738 742161124 3386 True 3354.000000 3354 84.671000 962 4368 1 chr4A.!!$R7 3406
10 TraesCS7A01G008500 chr4A 740148082 740150804 2722 True 3184.000000 3184 87.949000 1206 3922 1 chr4A.!!$R6 2716
11 TraesCS7A01G008500 chr4A 739605557 739609984 4427 False 2392.000000 4052 86.583000 958 5532 2 chr4A.!!$F4 4574
12 TraesCS7A01G008500 chr4A 739886463 739888458 1995 False 1962.000000 1962 84.653000 2470 4458 1 chr4A.!!$F3 1988
13 TraesCS7A01G008500 chr4A 740494224 740498165 3941 False 1886.000000 3195 83.504500 1457 5532 2 chr4A.!!$F5 4075
14 TraesCS7A01G008500 chr4A 742019768 742023974 4206 False 1421.666667 2350 87.976667 958 5532 3 chr4A.!!$F6 4574
15 TraesCS7A01G008500 chr4A 733821805 733822868 1063 False 1221.000000 1221 87.719000 4476 5532 1 chr4A.!!$F2 1056
16 TraesCS7A01G008500 chr4A 740119697 740124065 4368 True 1011.750000 2361 82.310500 958 5409 4 chr4A.!!$R8 4451
17 TraesCS7A01G008500 chr4A 741503644 741505836 2192 True 930.000000 1376 81.911000 3161 5532 2 chr4A.!!$R9 2371
18 TraesCS7A01G008500 chr4A 740133821 740134389 568 True 647.000000 647 87.822000 4976 5532 1 chr4A.!!$R5 556
19 TraesCS7A01G008500 chr4A 733983551 733984227 676 True 608.000000 608 83.262000 4844 5532 1 chr4A.!!$R3 688
20 TraesCS7A01G008500 chr1D 464795416 464797451 2035 False 1736.000000 1736 82.222000 2320 4371 1 chr1D.!!$F1 2051

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
712 1123 0.032813 CCCCTGAATGGCCACATCTT 60.033 55.0 8.16 0.0 35.94 2.40 F
741 1152 0.105453 TAGCTCCTCCCCATCTCCAC 60.105 60.0 0.00 0.0 0.00 4.02 F
975 1386 0.159345 CTTGCGCACAAACAAATCGC 59.841 50.0 11.12 0.0 45.23 4.58 F
1568 1988 0.477204 AGTGATGGGGATGCTGATGG 59.523 55.0 0.00 0.0 0.00 3.51 F
2159 2662 0.039708 ACTTCCGTCTTCCGTCGAAC 60.040 55.0 0.00 0.0 33.66 3.95 F
3857 4402 0.042131 TCGGGTGTAGGGATTCCAGT 59.958 55.0 4.80 0.0 34.83 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2149 2652 0.599558 ACGATGAAGGTTCGACGGAA 59.400 50.000 0.0 0.0 39.81 4.30 R
2150 2653 0.599558 AACGATGAAGGTTCGACGGA 59.400 50.000 0.0 0.0 39.81 4.69 R
2151 2654 0.713883 CAACGATGAAGGTTCGACGG 59.286 55.000 0.0 0.0 39.81 4.79 R
3512 4053 1.202879 CCCAAGTCCAGTACCAGCAAA 60.203 52.381 0.0 0.0 0.00 3.68 R
3859 4404 0.680061 GGGGTTCTCTTCGTGACTGT 59.320 55.000 0.0 0.0 0.00 3.55 R
5368 6514 1.080298 GGACACACACAAACACACGA 58.920 50.000 0.0 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 8.635765 ACAAAAGATAAAAATAGAGAGTGGCA 57.364 30.769 0.00 0.00 0.00 4.92
60 61 9.247861 ACAAAAGATAAAAATAGAGAGTGGCAT 57.752 29.630 0.00 0.00 0.00 4.40
63 64 9.466497 AAAGATAAAAATAGAGAGTGGCATTCA 57.534 29.630 12.78 0.00 0.00 2.57
64 65 9.466497 AAGATAAAAATAGAGAGTGGCATTCAA 57.534 29.630 12.78 0.00 0.00 2.69
65 66 9.466497 AGATAAAAATAGAGAGTGGCATTCAAA 57.534 29.630 12.78 0.00 0.00 2.69
66 67 9.508567 GATAAAAATAGAGAGTGGCATTCAAAC 57.491 33.333 12.78 3.65 0.00 2.93
68 69 2.550830 AGAGAGTGGCATTCAAACGT 57.449 45.000 12.78 0.00 0.00 3.99
69 70 3.678056 AGAGAGTGGCATTCAAACGTA 57.322 42.857 12.78 0.00 0.00 3.57
70 71 3.589988 AGAGAGTGGCATTCAAACGTAG 58.410 45.455 12.78 0.00 0.00 3.51
72 73 1.130561 GAGTGGCATTCAAACGTAGCC 59.869 52.381 4.99 0.00 45.41 3.93
73 74 1.165270 GTGGCATTCAAACGTAGCCT 58.835 50.000 0.00 0.00 45.42 4.58
92 93 4.344102 AGCCTTGCTTGCAATTCATGATAT 59.656 37.500 8.55 0.00 33.89 1.63
162 167 5.902613 TTCAAATTTCCCTGCATCTGTAG 57.097 39.130 0.00 0.00 0.00 2.74
233 238 3.817647 CCAACTGATAAGAATAGCCAGCC 59.182 47.826 0.00 0.00 0.00 4.85
305 310 8.305317 TGTCATGATTCAGATGTGCAATAAAAA 58.695 29.630 0.00 0.00 0.00 1.94
365 370 9.733219 AGCGTTTAGATCACTACTTTAGTTATC 57.267 33.333 0.00 0.95 38.88 1.75
390 395 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
391 396 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
428 433 1.549203 ACATGTCTTGGGATGCCAAC 58.451 50.000 15.64 7.92 0.00 3.77
429 434 1.203038 ACATGTCTTGGGATGCCAACA 60.203 47.619 15.64 13.92 0.00 3.33
430 435 1.203052 CATGTCTTGGGATGCCAACAC 59.797 52.381 15.64 15.83 0.00 3.32
432 437 1.303236 TCTTGGGATGCCAACACGG 60.303 57.895 15.64 5.58 38.11 4.94
434 439 1.152652 TTGGGATGCCAACACGGTT 60.153 52.632 15.64 0.00 36.97 4.44
435 440 0.757188 TTGGGATGCCAACACGGTTT 60.757 50.000 15.64 0.00 36.97 3.27
436 441 1.288752 GGGATGCCAACACGGTTTG 59.711 57.895 0.00 0.00 36.97 2.93
442 447 3.816388 CAACACGGTTTGGACGGT 58.184 55.556 0.00 0.00 39.59 4.83
446 451 4.941309 ACGGTTTGGACGGTGGCC 62.941 66.667 0.00 0.00 37.85 5.36
448 453 4.280019 GGTTTGGACGGTGGCCCT 62.280 66.667 0.00 0.00 0.00 5.19
449 454 2.203437 GTTTGGACGGTGGCCCTT 60.203 61.111 0.00 0.00 0.00 3.95
450 455 2.203422 TTTGGACGGTGGCCCTTG 60.203 61.111 0.00 0.00 0.00 3.61
451 456 3.801068 TTTGGACGGTGGCCCTTGG 62.801 63.158 0.00 0.00 0.00 3.61
453 458 4.717313 GGACGGTGGCCCTTGGAC 62.717 72.222 0.00 0.00 0.00 4.02
454 459 3.948719 GACGGTGGCCCTTGGACA 61.949 66.667 0.00 0.00 39.14 4.02
455 460 3.485346 GACGGTGGCCCTTGGACAA 62.485 63.158 0.00 0.00 45.35 3.18
456 461 2.983592 CGGTGGCCCTTGGACAAC 60.984 66.667 0.00 0.00 45.35 3.32
457 462 2.600470 GGTGGCCCTTGGACAACC 60.600 66.667 0.00 0.00 44.06 3.77
458 463 2.600470 GTGGCCCTTGGACAACCC 60.600 66.667 0.00 0.00 45.35 4.11
459 464 3.106609 TGGCCCTTGGACAACCCA 61.107 61.111 0.00 0.00 38.06 4.51
460 465 2.445155 GGCCCTTGGACAACCCAT 59.555 61.111 0.00 0.00 46.10 4.00
461 466 1.984026 GGCCCTTGGACAACCCATG 60.984 63.158 0.00 0.00 46.10 3.66
479 484 4.704833 GGGCGAGCTGCTCACCAA 62.705 66.667 31.24 0.00 46.33 3.67
480 485 3.123620 GGCGAGCTGCTCACCAAG 61.124 66.667 27.21 13.33 45.43 3.61
481 486 2.047844 GCGAGCTGCTCACCAAGA 60.048 61.111 27.46 0.00 41.73 3.02
482 487 1.669115 GCGAGCTGCTCACCAAGAA 60.669 57.895 27.46 0.00 41.73 2.52
483 488 1.230635 GCGAGCTGCTCACCAAGAAA 61.231 55.000 27.46 0.00 41.73 2.52
484 489 1.229428 CGAGCTGCTCACCAAGAAAA 58.771 50.000 27.46 0.00 0.00 2.29
485 490 1.808945 CGAGCTGCTCACCAAGAAAAT 59.191 47.619 27.46 0.00 0.00 1.82
486 491 2.159599 CGAGCTGCTCACCAAGAAAATC 60.160 50.000 27.46 0.00 0.00 2.17
487 492 2.816087 GAGCTGCTCACCAAGAAAATCA 59.184 45.455 24.02 0.00 0.00 2.57
488 493 3.428532 AGCTGCTCACCAAGAAAATCAT 58.571 40.909 0.00 0.00 0.00 2.45
489 494 3.830755 AGCTGCTCACCAAGAAAATCATT 59.169 39.130 0.00 0.00 0.00 2.57
490 495 4.282703 AGCTGCTCACCAAGAAAATCATTT 59.717 37.500 0.00 0.00 0.00 2.32
491 496 5.477984 AGCTGCTCACCAAGAAAATCATTTA 59.522 36.000 0.00 0.00 0.00 1.40
492 497 5.803967 GCTGCTCACCAAGAAAATCATTTAG 59.196 40.000 0.00 0.00 0.00 1.85
493 498 6.571150 GCTGCTCACCAAGAAAATCATTTAGT 60.571 38.462 0.00 0.00 0.00 2.24
494 499 7.288810 TGCTCACCAAGAAAATCATTTAGTT 57.711 32.000 0.00 0.00 0.00 2.24
495 500 7.147312 TGCTCACCAAGAAAATCATTTAGTTG 58.853 34.615 0.00 0.00 0.00 3.16
553 558 0.396435 CCACCCCTTTTCAAAAGCCC 59.604 55.000 4.15 0.00 0.00 5.19
557 562 2.092646 ACCCCTTTTCAAAAGCCCAAAC 60.093 45.455 4.15 0.00 0.00 2.93
617 622 2.647683 GGAGAGGCCCAATTCTAAGG 57.352 55.000 0.00 0.00 0.00 2.69
618 623 2.127708 GGAGAGGCCCAATTCTAAGGA 58.872 52.381 0.00 0.00 0.00 3.36
619 624 2.713708 GGAGAGGCCCAATTCTAAGGAT 59.286 50.000 0.00 0.00 0.00 3.24
620 625 3.244735 GGAGAGGCCCAATTCTAAGGATC 60.245 52.174 0.00 0.00 0.00 3.36
621 626 2.370189 AGAGGCCCAATTCTAAGGATCG 59.630 50.000 0.00 0.00 0.00 3.69
622 627 2.368875 GAGGCCCAATTCTAAGGATCGA 59.631 50.000 0.00 0.00 0.00 3.59
623 628 2.982488 AGGCCCAATTCTAAGGATCGAT 59.018 45.455 0.00 0.00 0.00 3.59
624 629 3.008485 AGGCCCAATTCTAAGGATCGATC 59.992 47.826 17.36 17.36 0.00 3.69
625 630 3.008485 GGCCCAATTCTAAGGATCGATCT 59.992 47.826 23.96 8.80 0.00 2.75
626 631 3.999663 GCCCAATTCTAAGGATCGATCTG 59.000 47.826 23.96 11.91 0.00 2.90
627 632 4.573900 CCCAATTCTAAGGATCGATCTGG 58.426 47.826 23.96 19.23 0.00 3.86
628 633 4.284490 CCCAATTCTAAGGATCGATCTGGA 59.716 45.833 23.96 10.61 0.00 3.86
629 634 5.477510 CCAATTCTAAGGATCGATCTGGAG 58.522 45.833 23.96 17.15 0.00 3.86
630 635 4.799564 ATTCTAAGGATCGATCTGGAGC 57.200 45.455 23.96 7.86 0.00 4.70
631 636 2.520069 TCTAAGGATCGATCTGGAGCC 58.480 52.381 23.96 7.88 42.82 4.70
632 637 1.548269 CTAAGGATCGATCTGGAGCCC 59.452 57.143 23.96 7.14 43.53 5.19
633 638 1.124477 AAGGATCGATCTGGAGCCCC 61.124 60.000 23.96 6.39 43.53 5.80
634 639 2.653702 GATCGATCTGGAGCCCCG 59.346 66.667 18.29 0.00 34.29 5.73
635 640 2.123251 ATCGATCTGGAGCCCCGT 60.123 61.111 0.00 0.00 34.29 5.28
636 641 1.749334 GATCGATCTGGAGCCCCGTT 61.749 60.000 18.29 0.00 34.29 4.44
637 642 1.749334 ATCGATCTGGAGCCCCGTTC 61.749 60.000 0.00 0.00 34.29 3.95
638 643 2.506472 GATCTGGAGCCCCGTTCC 59.494 66.667 0.00 0.00 33.44 3.62
639 644 3.090532 ATCTGGAGCCCCGTTCCC 61.091 66.667 0.00 0.00 31.76 3.97
644 649 3.787001 GAGCCCCGTTCCCCTCTG 61.787 72.222 0.00 0.00 0.00 3.35
647 652 3.400054 CCCCGTTCCCCTCTGGTC 61.400 72.222 0.00 0.00 34.77 4.02
648 653 3.771160 CCCGTTCCCCTCTGGTCG 61.771 72.222 0.00 0.00 34.77 4.79
649 654 4.452733 CCGTTCCCCTCTGGTCGC 62.453 72.222 0.00 0.00 33.64 5.19
650 655 4.796231 CGTTCCCCTCTGGTCGCG 62.796 72.222 0.00 0.00 34.77 5.87
651 656 3.692406 GTTCCCCTCTGGTCGCGT 61.692 66.667 5.77 0.00 34.77 6.01
652 657 3.379445 TTCCCCTCTGGTCGCGTC 61.379 66.667 5.77 0.00 34.77 5.19
691 1102 1.839994 TCAATTGCTCCTCCCCTAGTG 59.160 52.381 0.00 0.00 0.00 2.74
692 1103 1.561542 CAATTGCTCCTCCCCTAGTGT 59.438 52.381 0.00 0.00 0.00 3.55
693 1104 1.501582 ATTGCTCCTCCCCTAGTGTC 58.498 55.000 0.00 0.00 0.00 3.67
694 1105 0.617820 TTGCTCCTCCCCTAGTGTCC 60.618 60.000 0.00 0.00 0.00 4.02
695 1106 1.762858 GCTCCTCCCCTAGTGTCCC 60.763 68.421 0.00 0.00 0.00 4.46
696 1107 1.075151 CTCCTCCCCTAGTGTCCCC 60.075 68.421 0.00 0.00 0.00 4.81
697 1108 1.549322 TCCTCCCCTAGTGTCCCCT 60.549 63.158 0.00 0.00 0.00 4.79
698 1109 1.383248 CCTCCCCTAGTGTCCCCTG 60.383 68.421 0.00 0.00 0.00 4.45
699 1110 1.704082 CTCCCCTAGTGTCCCCTGA 59.296 63.158 0.00 0.00 0.00 3.86
700 1111 0.042731 CTCCCCTAGTGTCCCCTGAA 59.957 60.000 0.00 0.00 0.00 3.02
701 1112 0.722676 TCCCCTAGTGTCCCCTGAAT 59.277 55.000 0.00 0.00 0.00 2.57
702 1113 0.839946 CCCCTAGTGTCCCCTGAATG 59.160 60.000 0.00 0.00 0.00 2.67
703 1114 0.839946 CCCTAGTGTCCCCTGAATGG 59.160 60.000 0.00 0.00 0.00 3.16
704 1115 0.181350 CCTAGTGTCCCCTGAATGGC 59.819 60.000 0.00 0.00 0.00 4.40
705 1116 0.181350 CTAGTGTCCCCTGAATGGCC 59.819 60.000 0.00 0.00 0.00 5.36
706 1117 0.548926 TAGTGTCCCCTGAATGGCCA 60.549 55.000 8.56 8.56 0.00 5.36
707 1118 1.678970 GTGTCCCCTGAATGGCCAC 60.679 63.158 8.16 0.00 0.00 5.01
708 1119 2.159490 TGTCCCCTGAATGGCCACA 61.159 57.895 8.16 0.36 0.00 4.17
709 1120 1.307647 GTCCCCTGAATGGCCACAT 59.692 57.895 8.16 0.00 39.54 3.21
710 1121 0.753111 GTCCCCTGAATGGCCACATC 60.753 60.000 8.16 10.95 35.94 3.06
711 1122 0.920763 TCCCCTGAATGGCCACATCT 60.921 55.000 8.16 0.00 35.94 2.90
712 1123 0.032813 CCCCTGAATGGCCACATCTT 60.033 55.000 8.16 0.00 35.94 2.40
713 1124 1.396653 CCCTGAATGGCCACATCTTC 58.603 55.000 8.16 9.00 35.94 2.87
714 1125 1.064166 CCCTGAATGGCCACATCTTCT 60.064 52.381 8.16 0.00 35.94 2.85
715 1126 2.622452 CCCTGAATGGCCACATCTTCTT 60.622 50.000 8.16 0.00 35.94 2.52
716 1127 2.686915 CCTGAATGGCCACATCTTCTTC 59.313 50.000 8.16 6.84 35.94 2.87
717 1128 3.349927 CTGAATGGCCACATCTTCTTCA 58.650 45.455 8.16 11.78 35.94 3.02
718 1129 3.952323 CTGAATGGCCACATCTTCTTCAT 59.048 43.478 8.16 0.00 35.94 2.57
719 1130 3.949754 TGAATGGCCACATCTTCTTCATC 59.050 43.478 8.16 0.00 35.94 2.92
720 1131 2.425143 TGGCCACATCTTCTTCATCC 57.575 50.000 0.00 0.00 0.00 3.51
721 1132 1.918262 TGGCCACATCTTCTTCATCCT 59.082 47.619 0.00 0.00 0.00 3.24
722 1133 2.309755 TGGCCACATCTTCTTCATCCTT 59.690 45.455 0.00 0.00 0.00 3.36
723 1134 3.523157 TGGCCACATCTTCTTCATCCTTA 59.477 43.478 0.00 0.00 0.00 2.69
724 1135 4.133078 GGCCACATCTTCTTCATCCTTAG 58.867 47.826 0.00 0.00 0.00 2.18
725 1136 3.563390 GCCACATCTTCTTCATCCTTAGC 59.437 47.826 0.00 0.00 0.00 3.09
726 1137 4.685575 GCCACATCTTCTTCATCCTTAGCT 60.686 45.833 0.00 0.00 0.00 3.32
727 1138 5.055812 CCACATCTTCTTCATCCTTAGCTC 58.944 45.833 0.00 0.00 0.00 4.09
728 1139 5.055812 CACATCTTCTTCATCCTTAGCTCC 58.944 45.833 0.00 0.00 0.00 4.70
729 1140 4.968080 ACATCTTCTTCATCCTTAGCTCCT 59.032 41.667 0.00 0.00 0.00 3.69
730 1141 5.070313 ACATCTTCTTCATCCTTAGCTCCTC 59.930 44.000 0.00 0.00 0.00 3.71
731 1142 3.964031 TCTTCTTCATCCTTAGCTCCTCC 59.036 47.826 0.00 0.00 0.00 4.30
732 1143 2.683768 TCTTCATCCTTAGCTCCTCCC 58.316 52.381 0.00 0.00 0.00 4.30
733 1144 1.696884 CTTCATCCTTAGCTCCTCCCC 59.303 57.143 0.00 0.00 0.00 4.81
734 1145 0.642156 TCATCCTTAGCTCCTCCCCA 59.358 55.000 0.00 0.00 0.00 4.96
735 1146 1.224120 TCATCCTTAGCTCCTCCCCAT 59.776 52.381 0.00 0.00 0.00 4.00
736 1147 1.627834 CATCCTTAGCTCCTCCCCATC 59.372 57.143 0.00 0.00 0.00 3.51
737 1148 0.944999 TCCTTAGCTCCTCCCCATCT 59.055 55.000 0.00 0.00 0.00 2.90
738 1149 1.133009 TCCTTAGCTCCTCCCCATCTC 60.133 57.143 0.00 0.00 0.00 2.75
739 1150 1.347062 CTTAGCTCCTCCCCATCTCC 58.653 60.000 0.00 0.00 0.00 3.71
740 1151 0.642156 TTAGCTCCTCCCCATCTCCA 59.358 55.000 0.00 0.00 0.00 3.86
741 1152 0.105453 TAGCTCCTCCCCATCTCCAC 60.105 60.000 0.00 0.00 0.00 4.02
742 1153 1.383803 GCTCCTCCCCATCTCCACT 60.384 63.158 0.00 0.00 0.00 4.00
743 1154 0.105453 GCTCCTCCCCATCTCCACTA 60.105 60.000 0.00 0.00 0.00 2.74
744 1155 2.008242 CTCCTCCCCATCTCCACTAG 57.992 60.000 0.00 0.00 0.00 2.57
745 1156 1.219213 CTCCTCCCCATCTCCACTAGT 59.781 57.143 0.00 0.00 0.00 2.57
746 1157 1.218196 TCCTCCCCATCTCCACTAGTC 59.782 57.143 0.00 0.00 0.00 2.59
747 1158 1.710816 CTCCCCATCTCCACTAGTCC 58.289 60.000 0.00 0.00 0.00 3.85
748 1159 0.264955 TCCCCATCTCCACTAGTCCC 59.735 60.000 0.00 0.00 0.00 4.46
749 1160 0.764752 CCCCATCTCCACTAGTCCCC 60.765 65.000 0.00 0.00 0.00 4.81
750 1161 0.266152 CCCATCTCCACTAGTCCCCT 59.734 60.000 0.00 0.00 0.00 4.79
751 1162 1.503784 CCCATCTCCACTAGTCCCCTA 59.496 57.143 0.00 0.00 0.00 3.53
752 1163 2.599677 CCATCTCCACTAGTCCCCTAC 58.400 57.143 0.00 0.00 0.00 3.18
753 1164 2.178106 CCATCTCCACTAGTCCCCTACT 59.822 54.545 0.00 0.00 42.62 2.57
754 1165 3.374318 CCATCTCCACTAGTCCCCTACTT 60.374 52.174 0.00 0.00 39.80 2.24
755 1166 3.666345 TCTCCACTAGTCCCCTACTTC 57.334 52.381 0.00 0.00 39.80 3.01
756 1167 2.244252 TCTCCACTAGTCCCCTACTTCC 59.756 54.545 0.00 0.00 39.80 3.46
757 1168 1.290130 TCCACTAGTCCCCTACTTCCC 59.710 57.143 0.00 0.00 39.80 3.97
758 1169 1.291335 CCACTAGTCCCCTACTTCCCT 59.709 57.143 0.00 0.00 39.80 4.20
759 1170 2.389715 CACTAGTCCCCTACTTCCCTG 58.610 57.143 0.00 0.00 39.80 4.45
760 1171 2.024273 CACTAGTCCCCTACTTCCCTGA 60.024 54.545 0.00 0.00 39.80 3.86
761 1172 2.024177 ACTAGTCCCCTACTTCCCTGAC 60.024 54.545 0.00 0.00 39.80 3.51
762 1173 1.094269 AGTCCCCTACTTCCCTGACT 58.906 55.000 0.00 0.00 33.35 3.41
766 1177 1.344496 CCCCTACTTCCCTGACTCCAT 60.344 57.143 0.00 0.00 0.00 3.41
809 1220 1.290134 GTGAGTCCCCTCCCAAATCT 58.710 55.000 0.00 0.00 36.86 2.40
830 1241 6.398234 TCTCCATCTCCTTCTATTTTCTCG 57.602 41.667 0.00 0.00 0.00 4.04
867 1278 2.034939 TCAAATCCAACAGCAGCAAGTG 59.965 45.455 0.00 0.00 0.00 3.16
880 1291 1.654954 GCAAGTGGATCTGCAGCCTG 61.655 60.000 9.47 1.42 0.00 4.85
897 1308 2.224378 GCCTGTAGCAGCATATTCTCCA 60.224 50.000 0.00 0.00 42.97 3.86
898 1309 3.558746 GCCTGTAGCAGCATATTCTCCAT 60.559 47.826 0.00 0.00 42.97 3.41
899 1310 4.323028 GCCTGTAGCAGCATATTCTCCATA 60.323 45.833 0.00 0.00 42.97 2.74
900 1311 5.174395 CCTGTAGCAGCATATTCTCCATAC 58.826 45.833 0.00 0.00 0.00 2.39
901 1312 5.046735 CCTGTAGCAGCATATTCTCCATACT 60.047 44.000 0.00 0.00 0.00 2.12
902 1313 6.425210 TGTAGCAGCATATTCTCCATACTT 57.575 37.500 0.00 0.00 0.00 2.24
903 1314 7.310052 CCTGTAGCAGCATATTCTCCATACTTA 60.310 40.741 0.00 0.00 0.00 2.24
904 1315 7.378966 TGTAGCAGCATATTCTCCATACTTAC 58.621 38.462 0.00 0.00 0.00 2.34
905 1316 6.678568 AGCAGCATATTCTCCATACTTACT 57.321 37.500 0.00 0.00 0.00 2.24
906 1317 7.072263 AGCAGCATATTCTCCATACTTACTT 57.928 36.000 0.00 0.00 0.00 2.24
907 1318 6.933521 AGCAGCATATTCTCCATACTTACTTG 59.066 38.462 0.00 0.00 0.00 3.16
908 1319 6.348050 GCAGCATATTCTCCATACTTACTTGC 60.348 42.308 0.00 0.00 0.00 4.01
909 1320 6.707608 CAGCATATTCTCCATACTTACTTGCA 59.292 38.462 0.00 0.00 0.00 4.08
910 1321 7.389884 CAGCATATTCTCCATACTTACTTGCAT 59.610 37.037 0.00 0.00 0.00 3.96
911 1322 7.941238 AGCATATTCTCCATACTTACTTGCATT 59.059 33.333 0.00 0.00 0.00 3.56
912 1323 8.571336 GCATATTCTCCATACTTACTTGCATTT 58.429 33.333 0.00 0.00 0.00 2.32
915 1326 8.814038 ATTCTCCATACTTACTTGCATTTTCT 57.186 30.769 0.00 0.00 0.00 2.52
916 1327 8.635765 TTCTCCATACTTACTTGCATTTTCTT 57.364 30.769 0.00 0.00 0.00 2.52
917 1328 9.733556 TTCTCCATACTTACTTGCATTTTCTTA 57.266 29.630 0.00 0.00 0.00 2.10
918 1329 9.162764 TCTCCATACTTACTTGCATTTTCTTAC 57.837 33.333 0.00 0.00 0.00 2.34
919 1330 9.167311 CTCCATACTTACTTGCATTTTCTTACT 57.833 33.333 0.00 0.00 0.00 2.24
920 1331 8.946085 TCCATACTTACTTGCATTTTCTTACTG 58.054 33.333 0.00 0.00 0.00 2.74
921 1332 8.730680 CCATACTTACTTGCATTTTCTTACTGT 58.269 33.333 0.00 0.00 0.00 3.55
922 1333 9.760660 CATACTTACTTGCATTTTCTTACTGTC 57.239 33.333 0.00 0.00 0.00 3.51
923 1334 6.888430 ACTTACTTGCATTTTCTTACTGTCG 58.112 36.000 0.00 0.00 0.00 4.35
924 1335 4.147219 ACTTGCATTTTCTTACTGTCGC 57.853 40.909 0.00 0.00 0.00 5.19
925 1336 3.815401 ACTTGCATTTTCTTACTGTCGCT 59.185 39.130 0.00 0.00 0.00 4.93
926 1337 4.275936 ACTTGCATTTTCTTACTGTCGCTT 59.724 37.500 0.00 0.00 0.00 4.68
927 1338 4.145876 TGCATTTTCTTACTGTCGCTTG 57.854 40.909 0.00 0.00 0.00 4.01
928 1339 2.911102 GCATTTTCTTACTGTCGCTTGC 59.089 45.455 0.00 0.00 0.00 4.01
929 1340 3.365364 GCATTTTCTTACTGTCGCTTGCT 60.365 43.478 0.00 0.00 0.00 3.91
930 1341 4.142902 GCATTTTCTTACTGTCGCTTGCTA 60.143 41.667 0.00 0.00 0.00 3.49
931 1342 5.447818 GCATTTTCTTACTGTCGCTTGCTAT 60.448 40.000 0.00 0.00 0.00 2.97
932 1343 6.546395 CATTTTCTTACTGTCGCTTGCTATT 58.454 36.000 0.00 0.00 0.00 1.73
933 1344 6.554334 TTTTCTTACTGTCGCTTGCTATTT 57.446 33.333 0.00 0.00 0.00 1.40
934 1345 6.554334 TTTCTTACTGTCGCTTGCTATTTT 57.446 33.333 0.00 0.00 0.00 1.82
935 1346 6.554334 TTCTTACTGTCGCTTGCTATTTTT 57.446 33.333 0.00 0.00 0.00 1.94
960 1371 3.911661 AAATCTGACTCAGTTGCTTGC 57.088 42.857 5.94 0.00 32.61 4.01
975 1386 0.159345 CTTGCGCACAAACAAATCGC 59.841 50.000 11.12 0.00 45.23 4.58
1005 1425 1.332889 TGCTGAGAGCGACCATGGAT 61.333 55.000 21.47 1.98 46.26 3.41
1100 1520 0.804989 GGCGTCAAGGAAGATGTTGG 59.195 55.000 0.00 0.00 0.00 3.77
1320 1740 3.779183 AGAAGCTCATGAAGAAGATGGGA 59.221 43.478 0.00 0.00 0.00 4.37
1568 1988 0.477204 AGTGATGGGGATGCTGATGG 59.523 55.000 0.00 0.00 0.00 3.51
1574 1994 1.150081 GGGATGCTGATGGGTCCAG 59.850 63.158 0.00 0.00 32.31 3.86
1652 2072 3.378112 GCCAAAGCACTGTATGATAAGCA 59.622 43.478 0.00 0.00 39.53 3.91
1872 2322 1.063717 AGTGATTAGGGGGTTGCATGG 60.064 52.381 0.00 0.00 0.00 3.66
1913 2363 1.544691 TCTGAGAACAAGAGGTACGCC 59.455 52.381 0.00 0.00 0.00 5.68
1926 2380 1.485895 GGTACGCCCCCTGTTATGTAA 59.514 52.381 0.00 0.00 0.00 2.41
2044 2538 5.010719 GGGTTTCGATGTCCTATCATCACTA 59.989 44.000 7.32 0.00 42.82 2.74
2109 2611 9.936329 AATAATGTATTGTATCAAGGTTTCCCT 57.064 29.630 0.00 0.00 45.63 4.20
2115 2617 4.431378 TGTATCAAGGTTTCCCTACTCCA 58.569 43.478 0.00 0.00 41.56 3.86
2119 2621 6.848562 ATCAAGGTTTCCCTACTCCATTAT 57.151 37.500 0.00 0.00 41.56 1.28
2120 2622 6.001449 TCAAGGTTTCCCTACTCCATTATG 57.999 41.667 0.00 0.00 41.56 1.90
2121 2623 5.104109 TCAAGGTTTCCCTACTCCATTATGG 60.104 44.000 4.57 4.57 41.56 2.74
2122 2624 4.380791 AGGTTTCCCTACTCCATTATGGT 58.619 43.478 11.39 0.00 40.19 3.55
2123 2625 4.794067 AGGTTTCCCTACTCCATTATGGTT 59.206 41.667 11.39 2.44 40.19 3.67
2149 2652 1.057851 TTGGGTTGGGACTTCCGTCT 61.058 55.000 0.00 0.00 40.10 4.18
2150 2653 1.057851 TGGGTTGGGACTTCCGTCTT 61.058 55.000 0.00 0.00 40.10 3.01
2151 2654 0.321387 GGGTTGGGACTTCCGTCTTC 60.321 60.000 0.00 0.00 40.10 2.87
2153 2656 0.669625 GTTGGGACTTCCGTCTTCCG 60.670 60.000 0.00 0.00 40.10 4.30
2154 2657 1.117142 TTGGGACTTCCGTCTTCCGT 61.117 55.000 0.00 0.00 40.10 4.69
2155 2658 1.214853 GGGACTTCCGTCTTCCGTC 59.785 63.158 0.00 0.00 40.10 4.79
2156 2659 1.154073 GGACTTCCGTCTTCCGTCG 60.154 63.158 0.00 0.00 40.10 5.12
2157 2660 1.580845 GGACTTCCGTCTTCCGTCGA 61.581 60.000 0.00 0.00 40.10 4.20
2158 2661 0.239347 GACTTCCGTCTTCCGTCGAA 59.761 55.000 0.00 0.00 37.19 3.71
2159 2662 0.039708 ACTTCCGTCTTCCGTCGAAC 60.040 55.000 0.00 0.00 33.66 3.95
2636 3155 4.806247 GCCAGTGAAGTATACAAGCTACAG 59.194 45.833 5.50 0.00 0.00 2.74
3198 3739 7.148137 TGTCAAAGGAGGAAAAGTTTGTTACTC 60.148 37.037 0.00 0.00 35.54 2.59
3245 3786 1.135603 TCTTCACATTGCAATGCTCGC 60.136 47.619 33.94 0.00 40.04 5.03
3512 4053 7.177392 CCAAAGGAAATAGGACATCTGAAGTTT 59.823 37.037 0.00 0.00 0.00 2.66
3548 4089 5.998363 GGACTTGGGTAGAAATAGCATAAGG 59.002 44.000 0.00 0.00 0.00 2.69
3602 4143 3.144506 ACTGAAGTGCTTGAACATCTGG 58.855 45.455 0.00 0.00 0.00 3.86
3761 4305 8.844441 TTTTTAAAAGCGTATATGTACATGGC 57.156 30.769 18.81 14.96 0.00 4.40
3848 4393 2.037511 TGGTTTAGTTGTCGGGTGTAGG 59.962 50.000 0.00 0.00 0.00 3.18
3854 4399 0.906775 TTGTCGGGTGTAGGGATTCC 59.093 55.000 0.00 0.00 0.00 3.01
3855 4400 0.252330 TGTCGGGTGTAGGGATTCCA 60.252 55.000 4.80 0.00 34.83 3.53
3856 4401 0.464452 GTCGGGTGTAGGGATTCCAG 59.536 60.000 4.80 0.00 34.83 3.86
3857 4402 0.042131 TCGGGTGTAGGGATTCCAGT 59.958 55.000 4.80 0.00 34.83 4.00
3858 4403 0.464452 CGGGTGTAGGGATTCCAGTC 59.536 60.000 4.80 0.00 34.83 3.51
3859 4404 1.580059 GGGTGTAGGGATTCCAGTCA 58.420 55.000 4.80 0.00 34.83 3.41
4046 4620 3.131396 TGGAAGTTTTCGAGAGCTTGTC 58.869 45.455 9.79 3.30 0.00 3.18
4094 4680 0.611618 TCCACCATGACACCATTGGC 60.612 55.000 1.54 0.00 32.96 4.52
4095 4681 1.507630 CACCATGACACCATTGGCG 59.492 57.895 1.54 0.00 30.42 5.69
4096 4682 1.678635 ACCATGACACCATTGGCGG 60.679 57.895 1.54 0.00 30.42 6.13
4097 4683 2.491152 CATGACACCATTGGCGGC 59.509 61.111 0.00 0.00 30.42 6.53
4098 4684 3.133464 ATGACACCATTGGCGGCG 61.133 61.111 0.51 0.51 30.42 6.46
4121 4707 2.221299 AGGTGCGTTCCCCAAGCTA 61.221 57.895 0.00 0.00 0.00 3.32
4470 5204 2.388890 ATCTCCATGGGCAGCGCTAC 62.389 60.000 10.99 3.45 0.00 3.58
4519 5261 8.491045 TTCCTTTCTTTCCCAGATTAAAACAT 57.509 30.769 0.00 0.00 0.00 2.71
4778 5795 7.328982 GCCCTTAAAATACGCTATTAGAGAGAC 59.671 40.741 1.14 0.00 0.00 3.36
5301 6445 3.973472 AAAGAGGGTCTTGGGTTTTCT 57.027 42.857 0.00 0.00 36.71 2.52
5335 6479 2.937799 TGGTGTGTGTCGTTTAGGTTTC 59.062 45.455 0.00 0.00 0.00 2.78
5352 6496 5.098663 AGGTTTCTATCTTGGGTCTTGGTA 58.901 41.667 0.00 0.00 0.00 3.25
5368 6514 3.737559 TGGTATTGGAGATTGTGCCTT 57.262 42.857 0.00 0.00 0.00 4.35
5375 6521 1.512926 GAGATTGTGCCTTCGTGTGT 58.487 50.000 0.00 0.00 0.00 3.72
5376 6522 1.873591 GAGATTGTGCCTTCGTGTGTT 59.126 47.619 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.388500 CCTTCATGTACAGGCATTTGAAAAATT 59.612 33.333 1.79 0.00 0.00 1.82
1 2 6.875195 CCTTCATGTACAGGCATTTGAAAAAT 59.125 34.615 1.79 0.00 0.00 1.82
2 3 6.183360 ACCTTCATGTACAGGCATTTGAAAAA 60.183 34.615 1.79 0.00 32.79 1.94
55 56 1.539388 CAAGGCTACGTTTGAATGCCA 59.461 47.619 0.00 0.00 45.42 4.92
56 57 1.732405 GCAAGGCTACGTTTGAATGCC 60.732 52.381 0.00 0.00 43.52 4.40
57 58 1.200020 AGCAAGGCTACGTTTGAATGC 59.800 47.619 0.00 0.00 36.99 3.56
58 59 3.236816 CAAGCAAGGCTACGTTTGAATG 58.763 45.455 0.00 0.00 38.25 2.67
59 60 2.351738 GCAAGCAAGGCTACGTTTGAAT 60.352 45.455 14.77 0.00 38.25 2.57
60 61 1.001815 GCAAGCAAGGCTACGTTTGAA 60.002 47.619 14.77 0.00 38.25 2.69
61 62 0.591170 GCAAGCAAGGCTACGTTTGA 59.409 50.000 14.77 0.00 38.25 2.69
62 63 0.310543 TGCAAGCAAGGCTACGTTTG 59.689 50.000 0.00 8.48 38.25 2.93
63 64 1.028905 TTGCAAGCAAGGCTACGTTT 58.971 45.000 2.89 0.00 38.25 3.60
64 65 1.247567 ATTGCAAGCAAGGCTACGTT 58.752 45.000 13.35 0.00 38.25 3.99
65 66 1.200020 GAATTGCAAGCAAGGCTACGT 59.800 47.619 13.35 0.00 38.25 3.57
66 67 1.199789 TGAATTGCAAGCAAGGCTACG 59.800 47.619 13.35 0.00 38.25 3.51
68 69 3.090790 TCATGAATTGCAAGCAAGGCTA 58.909 40.909 13.35 0.69 38.25 3.93
69 70 1.897133 TCATGAATTGCAAGCAAGGCT 59.103 42.857 13.35 0.46 42.56 4.58
70 71 2.373540 TCATGAATTGCAAGCAAGGC 57.626 45.000 13.35 7.95 39.47 4.35
72 73 7.946655 AATCATATCATGAATTGCAAGCAAG 57.053 32.000 13.35 3.18 43.50 4.01
73 74 9.471084 CTAAATCATATCATGAATTGCAAGCAA 57.529 29.630 10.19 10.19 43.50 3.91
92 93 4.640789 AAACGGTGCAACAACTAAATCA 57.359 36.364 0.98 0.00 39.98 2.57
162 167 3.787001 CCCAGCCGAACCTCCCTC 61.787 72.222 0.00 0.00 0.00 4.30
201 206 2.191786 TATCAGTTGGGTGGCGGGTG 62.192 60.000 0.00 0.00 0.00 4.61
202 207 1.493854 TTATCAGTTGGGTGGCGGGT 61.494 55.000 0.00 0.00 0.00 5.28
203 208 0.748005 CTTATCAGTTGGGTGGCGGG 60.748 60.000 0.00 0.00 0.00 6.13
204 209 0.251916 TCTTATCAGTTGGGTGGCGG 59.748 55.000 0.00 0.00 0.00 6.13
205 210 2.107950 TTCTTATCAGTTGGGTGGCG 57.892 50.000 0.00 0.00 0.00 5.69
206 211 3.565902 GCTATTCTTATCAGTTGGGTGGC 59.434 47.826 0.00 0.00 0.00 5.01
233 238 7.083875 TGTTGTTTCTTTCTTCAGTTAGGTG 57.916 36.000 0.00 0.00 0.00 4.00
305 310 6.781507 AGTTTACAGAGGGAGTACAGTAGTTT 59.218 38.462 0.00 0.00 0.00 2.66
365 370 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
389 394 3.263425 TGTTCAAACATACTCCCTCCTCC 59.737 47.826 0.00 0.00 33.17 4.30
390 395 4.553330 TGTTCAAACATACTCCCTCCTC 57.447 45.455 0.00 0.00 33.17 3.71
428 433 3.656045 GCCACCGTCCAAACCGTG 61.656 66.667 0.00 0.00 35.27 4.94
429 434 4.941309 GGCCACCGTCCAAACCGT 62.941 66.667 0.00 0.00 0.00 4.83
432 437 2.203437 AAGGGCCACCGTCCAAAC 60.203 61.111 6.18 0.00 43.47 2.93
434 439 4.278513 CCAAGGGCCACCGTCCAA 62.279 66.667 6.18 0.00 43.47 3.53
436 441 4.717313 GTCCAAGGGCCACCGTCC 62.717 72.222 6.18 0.00 43.47 4.79
437 442 3.485346 TTGTCCAAGGGCCACCGTC 62.485 63.158 6.18 0.00 43.47 4.79
438 443 3.494254 TTGTCCAAGGGCCACCGT 61.494 61.111 6.18 0.00 43.47 4.83
439 444 2.983592 GTTGTCCAAGGGCCACCG 60.984 66.667 6.18 0.00 43.47 4.94
440 445 2.600470 GGTTGTCCAAGGGCCACC 60.600 66.667 6.18 0.00 0.00 4.61
441 446 2.600470 GGGTTGTCCAAGGGCCAC 60.600 66.667 6.18 0.00 35.00 5.01
442 447 3.106609 TGGGTTGTCCAAGGGCCA 61.107 61.111 6.18 0.00 43.84 5.36
450 455 3.995506 CTCGCCCCATGGGTTGTCC 62.996 68.421 29.33 10.76 46.51 4.02
451 456 2.438434 CTCGCCCCATGGGTTGTC 60.438 66.667 29.33 13.82 46.51 3.18
452 457 4.740822 GCTCGCCCCATGGGTTGT 62.741 66.667 29.33 0.00 46.51 3.32
453 458 4.431131 AGCTCGCCCCATGGGTTG 62.431 66.667 29.33 20.34 46.51 3.77
454 459 4.431131 CAGCTCGCCCCATGGGTT 62.431 66.667 29.33 4.77 46.51 4.11
458 463 4.478371 TGAGCAGCTCGCCCCATG 62.478 66.667 17.81 0.00 44.04 3.66
459 464 4.479993 GTGAGCAGCTCGCCCCAT 62.480 66.667 23.40 0.00 44.04 4.00
464 469 1.230635 TTTCTTGGTGAGCAGCTCGC 61.231 55.000 25.41 25.41 39.93 5.03
465 470 1.229428 TTTTCTTGGTGAGCAGCTCG 58.771 50.000 17.81 2.93 32.35 5.03
466 471 2.816087 TGATTTTCTTGGTGAGCAGCTC 59.184 45.455 16.21 16.21 0.00 4.09
467 472 2.867624 TGATTTTCTTGGTGAGCAGCT 58.132 42.857 0.00 0.00 0.00 4.24
468 473 3.863142 ATGATTTTCTTGGTGAGCAGC 57.137 42.857 0.00 0.00 0.00 5.25
469 474 6.917533 ACTAAATGATTTTCTTGGTGAGCAG 58.082 36.000 0.00 0.00 0.00 4.24
470 475 6.899393 ACTAAATGATTTTCTTGGTGAGCA 57.101 33.333 0.00 0.00 0.00 4.26
471 476 7.147976 ACAACTAAATGATTTTCTTGGTGAGC 58.852 34.615 0.00 0.00 0.00 4.26
472 477 9.533253 AAACAACTAAATGATTTTCTTGGTGAG 57.467 29.630 0.00 0.00 0.00 3.51
473 478 9.883142 AAAACAACTAAATGATTTTCTTGGTGA 57.117 25.926 0.00 0.00 0.00 4.02
609 614 3.513515 GGCTCCAGATCGATCCTTAGAAT 59.486 47.826 21.66 0.00 0.00 2.40
610 615 2.894126 GGCTCCAGATCGATCCTTAGAA 59.106 50.000 21.66 1.56 0.00 2.10
611 616 2.520069 GGCTCCAGATCGATCCTTAGA 58.480 52.381 21.66 11.98 0.00 2.10
612 617 1.548269 GGGCTCCAGATCGATCCTTAG 59.452 57.143 21.66 16.06 0.00 2.18
613 618 1.633774 GGGCTCCAGATCGATCCTTA 58.366 55.000 21.66 6.41 0.00 2.69
614 619 1.124477 GGGGCTCCAGATCGATCCTT 61.124 60.000 21.66 1.12 0.00 3.36
615 620 1.535202 GGGGCTCCAGATCGATCCT 60.535 63.158 21.66 6.67 0.00 3.24
616 621 2.936912 CGGGGCTCCAGATCGATCC 61.937 68.421 21.66 5.90 0.00 3.36
617 622 1.749334 AACGGGGCTCCAGATCGATC 61.749 60.000 17.91 17.91 0.00 3.69
618 623 1.749334 GAACGGGGCTCCAGATCGAT 61.749 60.000 1.96 0.00 0.00 3.59
619 624 2.363795 AACGGGGCTCCAGATCGA 60.364 61.111 1.96 0.00 0.00 3.59
620 625 2.107141 GAACGGGGCTCCAGATCG 59.893 66.667 1.96 0.00 0.00 3.69
621 626 2.506472 GGAACGGGGCTCCAGATC 59.494 66.667 1.96 0.00 32.77 2.75
622 627 3.090532 GGGAACGGGGCTCCAGAT 61.091 66.667 1.96 0.00 34.34 2.90
627 632 3.787001 CAGAGGGGAACGGGGCTC 61.787 72.222 0.00 0.00 0.00 4.70
630 635 3.400054 GACCAGAGGGGAACGGGG 61.400 72.222 0.00 0.00 41.15 5.73
631 636 3.771160 CGACCAGAGGGGAACGGG 61.771 72.222 0.00 0.00 41.15 5.28
632 637 4.452733 GCGACCAGAGGGGAACGG 62.453 72.222 0.00 0.00 41.15 4.44
633 638 4.796231 CGCGACCAGAGGGGAACG 62.796 72.222 0.00 0.00 41.15 3.95
634 639 3.644399 GACGCGACCAGAGGGGAAC 62.644 68.421 15.93 0.00 41.15 3.62
635 640 3.379445 GACGCGACCAGAGGGGAA 61.379 66.667 15.93 0.00 41.15 3.97
643 648 2.915659 AAGACCTGGACGCGACCA 60.916 61.111 27.70 27.70 38.33 4.02
644 649 2.126031 GAAGACCTGGACGCGACC 60.126 66.667 20.91 20.91 0.00 4.79
645 650 0.733223 GAAGAAGACCTGGACGCGAC 60.733 60.000 15.93 6.56 0.00 5.19
646 651 1.585006 GAAGAAGACCTGGACGCGA 59.415 57.895 15.93 0.00 0.00 5.87
647 652 1.446272 GGAAGAAGACCTGGACGCG 60.446 63.158 3.53 3.53 0.00 6.01
648 653 0.108567 GAGGAAGAAGACCTGGACGC 60.109 60.000 0.00 0.00 37.93 5.19
649 654 0.533032 GGAGGAAGAAGACCTGGACG 59.467 60.000 0.00 0.00 37.93 4.79
650 655 1.828595 GAGGAGGAAGAAGACCTGGAC 59.171 57.143 0.00 0.00 37.93 4.02
651 656 1.719378 AGAGGAGGAAGAAGACCTGGA 59.281 52.381 0.00 0.00 37.93 3.86
652 657 2.107366 GAGAGGAGGAAGAAGACCTGG 58.893 57.143 0.00 0.00 37.93 4.45
653 658 2.813907 TGAGAGGAGGAAGAAGACCTG 58.186 52.381 0.00 0.00 37.93 4.00
654 659 3.551635 TTGAGAGGAGGAAGAAGACCT 57.448 47.619 0.00 0.00 40.80 3.85
655 660 4.512484 CAATTGAGAGGAGGAAGAAGACC 58.488 47.826 0.00 0.00 0.00 3.85
656 661 3.938334 GCAATTGAGAGGAGGAAGAAGAC 59.062 47.826 10.34 0.00 0.00 3.01
657 662 3.843027 AGCAATTGAGAGGAGGAAGAAGA 59.157 43.478 10.34 0.00 0.00 2.87
691 1102 0.753111 GATGTGGCCATTCAGGGGAC 60.753 60.000 9.72 0.00 38.09 4.46
692 1103 0.920763 AGATGTGGCCATTCAGGGGA 60.921 55.000 9.72 0.00 38.09 4.81
693 1104 0.032813 AAGATGTGGCCATTCAGGGG 60.033 55.000 9.72 0.00 38.09 4.79
694 1105 1.064166 AGAAGATGTGGCCATTCAGGG 60.064 52.381 9.72 0.00 38.09 4.45
695 1106 2.431954 AGAAGATGTGGCCATTCAGG 57.568 50.000 9.72 0.00 41.84 3.86
696 1107 3.349927 TGAAGAAGATGTGGCCATTCAG 58.650 45.455 9.72 0.00 0.00 3.02
697 1108 3.438216 TGAAGAAGATGTGGCCATTCA 57.562 42.857 9.72 10.44 0.00 2.57
698 1109 3.317430 GGATGAAGAAGATGTGGCCATTC 59.683 47.826 9.72 8.97 0.00 2.67
699 1110 3.053095 AGGATGAAGAAGATGTGGCCATT 60.053 43.478 9.72 0.00 0.00 3.16
700 1111 2.512896 AGGATGAAGAAGATGTGGCCAT 59.487 45.455 9.72 0.00 0.00 4.40
701 1112 1.918262 AGGATGAAGAAGATGTGGCCA 59.082 47.619 0.00 0.00 0.00 5.36
702 1113 2.725221 AGGATGAAGAAGATGTGGCC 57.275 50.000 0.00 0.00 0.00 5.36
703 1114 3.563390 GCTAAGGATGAAGAAGATGTGGC 59.437 47.826 0.00 0.00 0.00 5.01
704 1115 5.033589 AGCTAAGGATGAAGAAGATGTGG 57.966 43.478 0.00 0.00 0.00 4.17
705 1116 5.055812 GGAGCTAAGGATGAAGAAGATGTG 58.944 45.833 0.00 0.00 0.00 3.21
706 1117 4.968080 AGGAGCTAAGGATGAAGAAGATGT 59.032 41.667 0.00 0.00 0.00 3.06
707 1118 5.511202 GGAGGAGCTAAGGATGAAGAAGATG 60.511 48.000 0.00 0.00 0.00 2.90
708 1119 4.592778 GGAGGAGCTAAGGATGAAGAAGAT 59.407 45.833 0.00 0.00 0.00 2.40
709 1120 3.964031 GGAGGAGCTAAGGATGAAGAAGA 59.036 47.826 0.00 0.00 0.00 2.87
710 1121 3.070878 GGGAGGAGCTAAGGATGAAGAAG 59.929 52.174 0.00 0.00 0.00 2.85
711 1122 3.041946 GGGAGGAGCTAAGGATGAAGAA 58.958 50.000 0.00 0.00 0.00 2.52
712 1123 2.683768 GGGAGGAGCTAAGGATGAAGA 58.316 52.381 0.00 0.00 0.00 2.87
713 1124 1.696884 GGGGAGGAGCTAAGGATGAAG 59.303 57.143 0.00 0.00 0.00 3.02
714 1125 1.009552 TGGGGAGGAGCTAAGGATGAA 59.990 52.381 0.00 0.00 0.00 2.57
715 1126 0.642156 TGGGGAGGAGCTAAGGATGA 59.358 55.000 0.00 0.00 0.00 2.92
716 1127 1.627834 GATGGGGAGGAGCTAAGGATG 59.372 57.143 0.00 0.00 0.00 3.51
717 1128 1.511747 AGATGGGGAGGAGCTAAGGAT 59.488 52.381 0.00 0.00 0.00 3.24
718 1129 0.944999 AGATGGGGAGGAGCTAAGGA 59.055 55.000 0.00 0.00 0.00 3.36
719 1130 1.347062 GAGATGGGGAGGAGCTAAGG 58.653 60.000 0.00 0.00 0.00 2.69
720 1131 1.347062 GGAGATGGGGAGGAGCTAAG 58.653 60.000 0.00 0.00 0.00 2.18
721 1132 0.642156 TGGAGATGGGGAGGAGCTAA 59.358 55.000 0.00 0.00 0.00 3.09
722 1133 0.105453 GTGGAGATGGGGAGGAGCTA 60.105 60.000 0.00 0.00 0.00 3.32
723 1134 1.383803 GTGGAGATGGGGAGGAGCT 60.384 63.158 0.00 0.00 0.00 4.09
724 1135 0.105453 TAGTGGAGATGGGGAGGAGC 60.105 60.000 0.00 0.00 0.00 4.70
725 1136 1.219213 ACTAGTGGAGATGGGGAGGAG 59.781 57.143 0.00 0.00 0.00 3.69
726 1137 1.218196 GACTAGTGGAGATGGGGAGGA 59.782 57.143 0.00 0.00 0.00 3.71
727 1138 1.710816 GACTAGTGGAGATGGGGAGG 58.289 60.000 0.00 0.00 0.00 4.30
728 1139 1.710816 GGACTAGTGGAGATGGGGAG 58.289 60.000 0.00 0.00 0.00 4.30
729 1140 0.264955 GGGACTAGTGGAGATGGGGA 59.735 60.000 0.00 0.00 0.00 4.81
730 1141 0.764752 GGGGACTAGTGGAGATGGGG 60.765 65.000 0.00 0.00 0.00 4.96
731 1142 0.266152 AGGGGACTAGTGGAGATGGG 59.734 60.000 0.00 0.00 40.61 4.00
732 1143 2.178106 AGTAGGGGACTAGTGGAGATGG 59.822 54.545 0.00 0.00 44.96 3.51
733 1144 3.603965 AGTAGGGGACTAGTGGAGATG 57.396 52.381 0.00 0.00 44.96 2.90
734 1145 3.117054 GGAAGTAGGGGACTAGTGGAGAT 60.117 52.174 0.00 0.00 45.96 2.75
735 1146 2.244252 GGAAGTAGGGGACTAGTGGAGA 59.756 54.545 0.00 0.00 45.96 3.71
736 1147 2.668625 GGAAGTAGGGGACTAGTGGAG 58.331 57.143 0.00 0.00 45.96 3.86
737 1148 1.290130 GGGAAGTAGGGGACTAGTGGA 59.710 57.143 0.00 0.00 45.96 4.02
738 1149 1.291335 AGGGAAGTAGGGGACTAGTGG 59.709 57.143 0.00 0.00 45.96 4.00
739 1150 2.024273 TCAGGGAAGTAGGGGACTAGTG 60.024 54.545 0.00 0.00 45.96 2.74
741 1152 2.245287 AGTCAGGGAAGTAGGGGACTAG 59.755 54.545 0.00 0.00 45.49 2.57
742 1153 2.244252 GAGTCAGGGAAGTAGGGGACTA 59.756 54.545 0.00 0.00 43.67 2.59
744 1155 1.487300 GAGTCAGGGAAGTAGGGGAC 58.513 60.000 0.00 0.00 0.00 4.46
745 1156 0.338814 GGAGTCAGGGAAGTAGGGGA 59.661 60.000 0.00 0.00 0.00 4.81
746 1157 0.042731 TGGAGTCAGGGAAGTAGGGG 59.957 60.000 0.00 0.00 0.00 4.79
747 1158 1.765314 CATGGAGTCAGGGAAGTAGGG 59.235 57.143 0.00 0.00 0.00 3.53
748 1159 2.697751 CTCATGGAGTCAGGGAAGTAGG 59.302 54.545 0.00 0.00 0.00 3.18
749 1160 2.102252 GCTCATGGAGTCAGGGAAGTAG 59.898 54.545 0.00 0.00 31.39 2.57
750 1161 2.111384 GCTCATGGAGTCAGGGAAGTA 58.889 52.381 0.00 0.00 31.39 2.24
751 1162 0.908198 GCTCATGGAGTCAGGGAAGT 59.092 55.000 0.00 0.00 31.39 3.01
752 1163 0.907486 TGCTCATGGAGTCAGGGAAG 59.093 55.000 0.00 0.00 31.39 3.46
753 1164 1.280133 CTTGCTCATGGAGTCAGGGAA 59.720 52.381 0.00 0.00 31.39 3.97
754 1165 0.907486 CTTGCTCATGGAGTCAGGGA 59.093 55.000 0.00 0.00 31.39 4.20
755 1166 0.617413 ACTTGCTCATGGAGTCAGGG 59.383 55.000 0.00 0.00 31.39 4.45
756 1167 1.554160 AGACTTGCTCATGGAGTCAGG 59.446 52.381 16.25 8.48 41.67 3.86
757 1168 2.619147 CAGACTTGCTCATGGAGTCAG 58.381 52.381 16.25 8.70 41.67 3.51
758 1169 1.338484 GCAGACTTGCTCATGGAGTCA 60.338 52.381 16.25 4.69 46.95 3.41
759 1170 1.367659 GCAGACTTGCTCATGGAGTC 58.632 55.000 9.81 9.81 46.95 3.36
760 1171 3.547567 GCAGACTTGCTCATGGAGT 57.452 52.632 0.00 0.00 46.95 3.85
780 1191 2.048127 GGACTCACCTCACGCACC 60.048 66.667 0.00 0.00 35.41 5.01
809 1220 7.061054 TCTACGAGAAAATAGAAGGAGATGGA 58.939 38.462 0.00 0.00 0.00 3.41
867 1278 1.524002 TGCTACAGGCTGCAGATCC 59.476 57.895 20.43 10.41 42.39 3.36
880 1291 7.607250 AGTAAGTATGGAGAATATGCTGCTAC 58.393 38.462 3.58 4.21 0.00 3.58
897 1308 8.656849 CGACAGTAAGAAAATGCAAGTAAGTAT 58.343 33.333 0.00 0.00 0.00 2.12
898 1309 7.359765 GCGACAGTAAGAAAATGCAAGTAAGTA 60.360 37.037 0.00 0.00 0.00 2.24
899 1310 6.565999 GCGACAGTAAGAAAATGCAAGTAAGT 60.566 38.462 0.00 0.00 0.00 2.24
900 1311 5.790495 GCGACAGTAAGAAAATGCAAGTAAG 59.210 40.000 0.00 0.00 0.00 2.34
901 1312 5.468746 AGCGACAGTAAGAAAATGCAAGTAA 59.531 36.000 0.00 0.00 0.00 2.24
902 1313 4.994852 AGCGACAGTAAGAAAATGCAAGTA 59.005 37.500 0.00 0.00 0.00 2.24
903 1314 3.815401 AGCGACAGTAAGAAAATGCAAGT 59.185 39.130 0.00 0.00 0.00 3.16
904 1315 4.410492 AGCGACAGTAAGAAAATGCAAG 57.590 40.909 0.00 0.00 0.00 4.01
905 1316 4.536065 CAAGCGACAGTAAGAAAATGCAA 58.464 39.130 0.00 0.00 0.00 4.08
906 1317 3.609175 GCAAGCGACAGTAAGAAAATGCA 60.609 43.478 0.00 0.00 0.00 3.96
907 1318 2.911102 GCAAGCGACAGTAAGAAAATGC 59.089 45.455 0.00 0.00 0.00 3.56
908 1319 4.410492 AGCAAGCGACAGTAAGAAAATG 57.590 40.909 0.00 0.00 0.00 2.32
909 1320 6.743575 AATAGCAAGCGACAGTAAGAAAAT 57.256 33.333 0.00 0.00 0.00 1.82
910 1321 6.554334 AAATAGCAAGCGACAGTAAGAAAA 57.446 33.333 0.00 0.00 0.00 2.29
911 1322 6.554334 AAAATAGCAAGCGACAGTAAGAAA 57.446 33.333 0.00 0.00 0.00 2.52
912 1323 6.554334 AAAAATAGCAAGCGACAGTAAGAA 57.446 33.333 0.00 0.00 0.00 2.52
932 1343 8.169977 AGCAACTGAGTCAGATTTATGAAAAA 57.830 30.769 26.86 0.00 35.18 1.94
933 1344 7.750229 AGCAACTGAGTCAGATTTATGAAAA 57.250 32.000 26.86 0.00 35.18 2.29
934 1345 7.587629 CAAGCAACTGAGTCAGATTTATGAAA 58.412 34.615 26.86 0.00 35.18 2.69
935 1346 6.348786 GCAAGCAACTGAGTCAGATTTATGAA 60.349 38.462 26.86 0.00 35.18 2.57
936 1347 5.122869 GCAAGCAACTGAGTCAGATTTATGA 59.877 40.000 26.86 0.00 35.18 2.15
937 1348 5.330295 GCAAGCAACTGAGTCAGATTTATG 58.670 41.667 26.86 18.14 35.18 1.90
938 1349 4.093998 CGCAAGCAACTGAGTCAGATTTAT 59.906 41.667 26.86 6.89 35.18 1.40
939 1350 3.433274 CGCAAGCAACTGAGTCAGATTTA 59.567 43.478 26.86 0.00 35.18 1.40
940 1351 2.225019 CGCAAGCAACTGAGTCAGATTT 59.775 45.455 26.86 8.65 35.18 2.17
941 1352 1.802960 CGCAAGCAACTGAGTCAGATT 59.197 47.619 26.86 13.63 35.18 2.40
942 1353 1.436600 CGCAAGCAACTGAGTCAGAT 58.563 50.000 26.86 12.52 35.18 2.90
943 1354 2.904664 CGCAAGCAACTGAGTCAGA 58.095 52.632 26.86 0.00 35.18 3.27
956 1367 0.159345 GCGATTTGTTTGTGCGCAAG 59.841 50.000 14.00 0.77 46.19 4.01
960 1371 1.535636 TTGCGCGATTTGTTTGTGCG 61.536 50.000 12.10 0.00 46.51 5.34
975 1386 3.429141 CTCAGCAGCTGGGTTGCG 61.429 66.667 22.62 0.00 44.23 4.85
1100 1520 4.286032 TCTCCAGCTCTCTCTCTAGATACC 59.714 50.000 0.00 0.00 0.00 2.73
1430 1850 4.160899 CCAACTGGATTAGCAGCCATGC 62.161 54.545 0.00 0.00 45.39 4.06
1568 1988 2.237392 AGTATCTTGAGTTGCCTGGACC 59.763 50.000 0.00 0.00 0.00 4.46
1850 2288 3.480470 CATGCAACCCCCTAATCACTAG 58.520 50.000 0.00 0.00 0.00 2.57
1855 2293 2.310538 CTTCCATGCAACCCCCTAATC 58.689 52.381 0.00 0.00 0.00 1.75
1872 2322 7.322664 TCAGAATTCAATAATTGGTTGCCTTC 58.677 34.615 8.44 1.20 35.41 3.46
1941 2406 6.926313 ACGCTATTCTCTCCCATTTACTATC 58.074 40.000 0.00 0.00 0.00 2.08
1954 2419 4.211125 TCTCAGGATTGACGCTATTCTCT 58.789 43.478 0.00 0.00 0.00 3.10
2110 2612 9.500701 AACCCAAATTATAAACCATAATGGAGT 57.499 29.630 0.00 0.00 40.96 3.85
2115 2617 8.710239 GTCCCAACCCAAATTATAAACCATAAT 58.290 33.333 0.00 0.00 40.83 1.28
2119 2621 5.656420 AGTCCCAACCCAAATTATAAACCA 58.344 37.500 0.00 0.00 0.00 3.67
2120 2622 6.351541 GGAAGTCCCAACCCAAATTATAAACC 60.352 42.308 0.00 0.00 34.14 3.27
2121 2623 6.626402 CGGAAGTCCCAACCCAAATTATAAAC 60.626 42.308 0.00 0.00 34.14 2.01
2122 2624 5.419471 CGGAAGTCCCAACCCAAATTATAAA 59.581 40.000 0.00 0.00 34.14 1.40
2123 2625 4.951094 CGGAAGTCCCAACCCAAATTATAA 59.049 41.667 0.00 0.00 34.14 0.98
2149 2652 0.599558 ACGATGAAGGTTCGACGGAA 59.400 50.000 0.00 0.00 39.81 4.30
2150 2653 0.599558 AACGATGAAGGTTCGACGGA 59.400 50.000 0.00 0.00 39.81 4.69
2151 2654 0.713883 CAACGATGAAGGTTCGACGG 59.286 55.000 0.00 0.00 39.81 4.79
2153 2656 3.246699 TGAAACAACGATGAAGGTTCGAC 59.753 43.478 0.00 0.00 39.81 4.20
2154 2657 3.459145 TGAAACAACGATGAAGGTTCGA 58.541 40.909 0.00 0.00 39.81 3.71
2155 2658 3.870723 TGAAACAACGATGAAGGTTCG 57.129 42.857 0.00 0.00 42.20 3.95
2156 2659 9.651718 GAATATATGAAACAACGATGAAGGTTC 57.348 33.333 0.00 0.00 0.00 3.62
2157 2660 9.396022 AGAATATATGAAACAACGATGAAGGTT 57.604 29.630 0.00 0.00 0.00 3.50
2158 2661 8.964476 AGAATATATGAAACAACGATGAAGGT 57.036 30.769 0.00 0.00 0.00 3.50
2558 3077 5.357878 TGTGATTATCCTGCTTCCACAATTC 59.642 40.000 0.00 0.00 31.21 2.17
2636 3155 6.405176 CCTTGGATAAATCAAGAGAAAGTGGC 60.405 42.308 5.51 0.00 42.94 5.01
3012 3535 1.880941 ACCCCTAGTTCCTCATGGAC 58.119 55.000 0.00 0.00 43.06 4.02
3025 3548 5.322754 CAATCTCGAATAGTCCTACCCCTA 58.677 45.833 0.00 0.00 0.00 3.53
3225 3766 2.905959 CGAGCATTGCAATGTGAAGA 57.094 45.000 33.67 0.00 38.65 2.87
3245 3786 4.749099 GCTCTATGATGAACAACTAGCCTG 59.251 45.833 0.00 0.00 0.00 4.85
3283 3824 3.554524 CTTGCTTGTAATGTTGACGTGG 58.445 45.455 0.00 0.00 0.00 4.94
3512 4053 1.202879 CCCAAGTCCAGTACCAGCAAA 60.203 52.381 0.00 0.00 0.00 3.68
3548 4089 4.678309 CGACCAATACTCTCTGGAAGTTCC 60.678 50.000 15.50 15.50 36.49 3.62
3602 4143 2.622942 TGGCACTTCAATGTCTGTTTCC 59.377 45.455 0.00 0.00 0.00 3.13
3761 4305 4.932200 GCCCAACTATTCATTCTCCTATCG 59.068 45.833 0.00 0.00 0.00 2.92
3848 4393 1.272490 TCGTGACTGTGACTGGAATCC 59.728 52.381 0.00 0.00 0.00 3.01
3854 4399 3.046390 GTTCTCTTCGTGACTGTGACTG 58.954 50.000 0.00 0.00 0.00 3.51
3855 4400 2.034812 GGTTCTCTTCGTGACTGTGACT 59.965 50.000 0.00 0.00 0.00 3.41
3856 4401 2.395654 GGTTCTCTTCGTGACTGTGAC 58.604 52.381 0.00 0.00 0.00 3.67
3857 4402 1.340248 GGGTTCTCTTCGTGACTGTGA 59.660 52.381 0.00 0.00 0.00 3.58
3858 4403 1.605712 GGGGTTCTCTTCGTGACTGTG 60.606 57.143 0.00 0.00 0.00 3.66
3859 4404 0.680061 GGGGTTCTCTTCGTGACTGT 59.320 55.000 0.00 0.00 0.00 3.55
3928 4502 1.072965 CCATCATCCCAGGTTCTAGGC 59.927 57.143 0.00 0.00 0.00 3.93
4014 4588 3.821033 CGAAAACTTCCAAAGACCTCCAT 59.179 43.478 0.00 0.00 0.00 3.41
4046 4620 2.125350 GTCTCCAGCTTGAGGGCG 60.125 66.667 14.43 0.00 37.29 6.13
4121 4707 2.439507 TGCTTCTGTCCTGAAGAACCTT 59.560 45.455 15.51 0.00 44.40 3.50
4625 5503 9.875691 GATTGGCAGTTCCTTTTATTTAATCTT 57.124 29.630 0.00 0.00 35.26 2.40
4668 5556 2.093306 TCGTGTGGGCAGATTTGTAG 57.907 50.000 0.00 0.00 0.00 2.74
4800 5817 5.984695 ATAGCGTCCTGAGCAATATCTAA 57.015 39.130 0.00 0.00 37.01 2.10
4801 5818 5.066634 GCTATAGCGTCCTGAGCAATATCTA 59.933 44.000 9.40 0.00 37.01 1.98
5227 6370 4.240175 ACAGACTACTCGACCTCAAAAC 57.760 45.455 0.00 0.00 0.00 2.43
5232 6375 1.813786 AGCAACAGACTACTCGACCTC 59.186 52.381 0.00 0.00 0.00 3.85
5233 6376 1.912417 AGCAACAGACTACTCGACCT 58.088 50.000 0.00 0.00 0.00 3.85
5335 6479 5.366768 TCTCCAATACCAAGACCCAAGATAG 59.633 44.000 0.00 0.00 0.00 2.08
5352 6496 2.086869 CACGAAGGCACAATCTCCAAT 58.913 47.619 0.00 0.00 0.00 3.16
5368 6514 1.080298 GGACACACACAAACACACGA 58.920 50.000 0.00 0.00 0.00 4.35
5375 6521 3.192422 CCAAAGAACAGGACACACACAAA 59.808 43.478 0.00 0.00 0.00 2.83
5376 6522 2.752354 CCAAAGAACAGGACACACACAA 59.248 45.455 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.