Multiple sequence alignment - TraesCS7A01G008400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G008400 chr7A 100.000 1640 0 0 934 2573 3807737 3806098 0.000000e+00 3029.0
1 TraesCS7A01G008400 chr7A 100.000 1480 0 0 2883 4362 3805788 3804309 0.000000e+00 2734.0
2 TraesCS7A01G008400 chr7A 100.000 655 0 0 1 655 3808670 3808016 0.000000e+00 1210.0
3 TraesCS7A01G008400 chr7A 93.292 641 43 0 958 1598 3844195 3843555 0.000000e+00 946.0
4 TraesCS7A01G008400 chr7A 87.781 401 43 2 3968 4362 3842785 3842385 8.540000e-127 464.0
5 TraesCS7A01G008400 chr7A 91.852 270 21 1 6 274 77668027 77668296 4.120000e-100 375.0
6 TraesCS7A01G008400 chr7A 85.526 304 28 9 3147 3449 2805303 2805015 1.970000e-78 303.0
7 TraesCS7A01G008400 chr5B 95.287 976 45 1 1597 2572 308535099 308534125 0.000000e+00 1546.0
8 TraesCS7A01G008400 chr5B 91.760 267 21 1 9 274 491820490 491820756 1.920000e-98 370.0
9 TraesCS7A01G008400 chr2A 96.101 949 36 1 1596 2544 715381094 715382041 0.000000e+00 1546.0
10 TraesCS7A01G008400 chr2A 98.354 243 4 0 2883 3125 715382517 715382759 1.120000e-115 427.0
11 TraesCS7A01G008400 chr6B 95.046 969 47 1 1598 2566 648179128 648180095 0.000000e+00 1522.0
12 TraesCS7A01G008400 chr6B 95.556 45 0 2 3897 3939 41755343 41755299 2.180000e-08 71.3
13 TraesCS7A01G008400 chr1B 94.592 980 49 3 1595 2572 29079617 29078640 0.000000e+00 1513.0
14 TraesCS7A01G008400 chr1B 94.365 976 53 2 1598 2572 622943808 622942834 0.000000e+00 1496.0
15 TraesCS7A01G008400 chr1B 94.224 277 16 0 6 282 470880972 470880696 1.450000e-114 424.0
16 TraesCS7A01G008400 chr6A 94.153 992 51 7 1583 2572 419774102 419773116 0.000000e+00 1504.0
17 TraesCS7A01G008400 chr3D 94.371 977 52 2 1597 2572 20702649 20703623 0.000000e+00 1496.0
18 TraesCS7A01G008400 chr3D 100.000 38 0 0 3902 3939 361057846 361057809 2.180000e-08 71.3
19 TraesCS7A01G008400 chr1D 94.715 965 48 3 1603 2566 31052304 31053266 0.000000e+00 1496.0
20 TraesCS7A01G008400 chr1D 94.057 976 56 2 1597 2572 270634336 270635309 0.000000e+00 1480.0
21 TraesCS7A01G008400 chr1D 89.963 269 27 0 3147 3415 464794073 464794341 8.980000e-92 348.0
22 TraesCS7A01G008400 chr4A 93.721 653 40 1 946 1598 739605545 739606196 0.000000e+00 977.0
23 TraesCS7A01G008400 chr4A 92.738 661 48 0 938 1598 742019748 742020408 0.000000e+00 955.0
24 TraesCS7A01G008400 chr4A 90.323 651 60 3 949 1598 742161137 742160489 0.000000e+00 850.0
25 TraesCS7A01G008400 chr4A 89.482 656 61 4 950 1598 740124073 740123419 0.000000e+00 822.0
26 TraesCS7A01G008400 chr4A 85.954 655 75 12 949 1598 739982332 739981690 0.000000e+00 684.0
27 TraesCS7A01G008400 chr4A 91.860 430 29 3 3939 4362 742021129 742021558 2.900000e-166 595.0
28 TraesCS7A01G008400 chr4A 91.204 432 29 5 3939 4362 740122710 740122280 2.920000e-161 579.0
29 TraesCS7A01G008400 chr4A 82.039 618 108 3 983 1598 740442561 740441945 1.390000e-144 523.0
30 TraesCS7A01G008400 chr4A 89.027 401 38 3 3968 4362 739606968 739607368 3.920000e-135 492.0
31 TraesCS7A01G008400 chr4A 89.487 390 30 8 274 655 742019327 742019713 2.360000e-132 483.0
32 TraesCS7A01G008400 chr4A 94.788 307 16 0 3147 3453 742020391 742020697 3.050000e-131 479.0
33 TraesCS7A01G008400 chr4A 88.030 401 42 3 3968 4362 740149642 740149242 1.840000e-128 470.0
34 TraesCS7A01G008400 chr4A 93.770 305 19 0 3149 3453 740123434 740123130 3.980000e-125 459.0
35 TraesCS7A01G008400 chr4A 85.484 434 51 7 3939 4362 740495090 740495521 4.000000e-120 442.0
36 TraesCS7A01G008400 chr4A 83.641 434 60 7 3939 4362 742159752 742159320 8.790000e-107 398.0
37 TraesCS7A01G008400 chr4A 85.271 387 28 13 3460 3845 740123085 740122727 5.330000e-99 372.0
38 TraesCS7A01G008400 chr4A 82.587 402 59 9 3970 4362 733806027 733806426 1.160000e-90 344.0
39 TraesCS7A01G008400 chr4A 83.505 388 45 17 274 655 739982733 739982359 1.160000e-90 344.0
40 TraesCS7A01G008400 chr4A 81.108 397 52 16 267 645 739605116 739605507 3.300000e-76 296.0
41 TraesCS7A01G008400 chr4A 83.333 264 42 2 3149 3411 734001952 734001690 4.360000e-60 243.0
42 TraesCS7A01G008400 chr4A 82.373 295 33 10 3149 3440 742160504 742160226 5.640000e-59 239.0
43 TraesCS7A01G008400 chr4A 80.255 314 45 8 3138 3450 741421360 741421657 2.040000e-53 220.0
44 TraesCS7A01G008400 chr4A 78.502 307 51 8 3147 3453 739885711 739886002 2.070000e-43 187.0
45 TraesCS7A01G008400 chr7D 92.616 623 46 0 976 1598 4010596 4009974 0.000000e+00 896.0
46 TraesCS7A01G008400 chr7D 81.877 618 107 5 984 1598 2904906 2904291 2.330000e-142 516.0
47 TraesCS7A01G008400 chr7D 88.308 402 39 3 3968 4362 4009309 4008909 3.950000e-130 475.0
48 TraesCS7A01G008400 chr7D 97.561 41 0 1 3900 3939 58843786 58843826 7.830000e-08 69.4
49 TraesCS7A01G008400 chr6D 97.122 278 7 1 6 283 390609794 390610070 6.610000e-128 468.0
50 TraesCS7A01G008400 chr6D 100.000 42 0 0 3903 3944 294175541 294175500 1.300000e-10 78.7
51 TraesCS7A01G008400 chrUn 95.833 264 11 0 11 274 431212515 431212252 1.120000e-115 427.0
52 TraesCS7A01G008400 chrUn 95.492 244 11 0 11 254 369752913 369752670 1.470000e-104 390.0
53 TraesCS7A01G008400 chr7B 95.455 264 12 0 11 274 653186737 653187000 5.220000e-114 422.0
54 TraesCS7A01G008400 chr7B 95.455 264 12 0 11 274 653246919 653247182 5.220000e-114 422.0
55 TraesCS7A01G008400 chr4B 94.074 270 15 1 6 275 649831159 649831427 4.060000e-110 409.0
56 TraesCS7A01G008400 chr4B 97.561 41 0 1 3900 3939 536927828 536927868 7.830000e-08 69.4
57 TraesCS7A01G008400 chr3B 100.000 38 0 0 3902 3939 776178170 776178207 2.180000e-08 71.3
58 TraesCS7A01G008400 chr4D 100.000 37 0 0 3903 3939 215464464 215464500 7.830000e-08 69.4
59 TraesCS7A01G008400 chr4D 90.196 51 2 2 3891 3938 335043593 335043643 3.640000e-06 63.9
60 TraesCS7A01G008400 chr3A 89.091 55 1 4 3890 3939 130654341 130654287 3.640000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G008400 chr7A 3804309 3808670 4361 True 2324.333333 3029 100.000000 1 4362 3 chr7A.!!$R2 4361
1 TraesCS7A01G008400 chr7A 3842385 3844195 1810 True 705.000000 946 90.536500 958 4362 2 chr7A.!!$R3 3404
2 TraesCS7A01G008400 chr5B 308534125 308535099 974 True 1546.000000 1546 95.287000 1597 2572 1 chr5B.!!$R1 975
3 TraesCS7A01G008400 chr2A 715381094 715382759 1665 False 986.500000 1546 97.227500 1596 3125 2 chr2A.!!$F1 1529
4 TraesCS7A01G008400 chr6B 648179128 648180095 967 False 1522.000000 1522 95.046000 1598 2566 1 chr6B.!!$F1 968
5 TraesCS7A01G008400 chr1B 29078640 29079617 977 True 1513.000000 1513 94.592000 1595 2572 1 chr1B.!!$R1 977
6 TraesCS7A01G008400 chr1B 622942834 622943808 974 True 1496.000000 1496 94.365000 1598 2572 1 chr1B.!!$R3 974
7 TraesCS7A01G008400 chr6A 419773116 419774102 986 True 1504.000000 1504 94.153000 1583 2572 1 chr6A.!!$R1 989
8 TraesCS7A01G008400 chr3D 20702649 20703623 974 False 1496.000000 1496 94.371000 1597 2572 1 chr3D.!!$F1 975
9 TraesCS7A01G008400 chr1D 31052304 31053266 962 False 1496.000000 1496 94.715000 1603 2566 1 chr1D.!!$F1 963
10 TraesCS7A01G008400 chr1D 270634336 270635309 973 False 1480.000000 1480 94.057000 1597 2572 1 chr1D.!!$F2 975
11 TraesCS7A01G008400 chr4A 742019327 742021558 2231 False 628.000000 955 92.218250 274 4362 4 chr4A.!!$F6 4088
12 TraesCS7A01G008400 chr4A 739605116 739607368 2252 False 588.333333 977 87.952000 267 4362 3 chr4A.!!$F5 4095
13 TraesCS7A01G008400 chr4A 740122280 740124073 1793 True 558.000000 822 89.931750 950 4362 4 chr4A.!!$R5 3412
14 TraesCS7A01G008400 chr4A 740441945 740442561 616 True 523.000000 523 82.039000 983 1598 1 chr4A.!!$R3 615
15 TraesCS7A01G008400 chr4A 739981690 739982733 1043 True 514.000000 684 84.729500 274 1598 2 chr4A.!!$R4 1324
16 TraesCS7A01G008400 chr4A 742159320 742161137 1817 True 495.666667 850 85.445667 949 4362 3 chr4A.!!$R6 3413
17 TraesCS7A01G008400 chr7D 4008909 4010596 1687 True 685.500000 896 90.462000 976 4362 2 chr7D.!!$R2 3386
18 TraesCS7A01G008400 chr7D 2904291 2904906 615 True 516.000000 516 81.877000 984 1598 1 chr7D.!!$R1 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 136 0.036765 TTAAGACCATCCTGCGCGTT 60.037 50.0 8.43 0.0 0.00 4.84 F
138 139 0.036765 AGACCATCCTGCGCGTTTAA 60.037 50.0 8.43 0.0 0.00 1.52 F
558 567 0.038166 TGCTGAGGGAAAAAGCGGAT 59.962 50.0 0.00 0.0 39.88 4.18 F
1878 1913 0.687427 ACACTGCTGCCAAGGGTTTT 60.687 50.0 0.00 0.0 0.00 2.43 F
2225 2260 0.742281 CGCAATAGCAGGAGCACACT 60.742 55.0 0.00 0.0 45.49 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1462 1497 0.325296 TCCACTAGGCGAGGGTCAAT 60.325 55.000 0.00 0.0 33.74 2.57 R
1878 1913 1.755395 CCTCATCGTGTACCGGGGA 60.755 63.158 6.32 0.0 37.11 4.81 R
2330 2368 1.379176 CAGTGAGGAGGAGGAGCGA 60.379 63.158 0.00 0.0 0.00 4.93 R
3162 3342 0.323360 CAAGGCCTCCCAATCCGAAA 60.323 55.000 5.23 0.0 0.00 3.46 R
3926 4195 0.109342 ATAAGGAATGCAGAGGCCGG 59.891 55.000 0.00 0.0 40.13 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.539712 TGTCTACTCAATATAAGCAAGTTGC 57.460 36.000 20.44 20.44 45.46 4.17
37 38 2.653115 GCAAGTTGCAAGAGCCCC 59.347 61.111 22.90 0.00 44.26 5.80
38 39 1.905354 GCAAGTTGCAAGAGCCCCT 60.905 57.895 22.90 0.00 44.26 4.79
39 40 1.466851 GCAAGTTGCAAGAGCCCCTT 61.467 55.000 22.90 0.00 44.26 3.95
53 54 8.974060 CAAGAGCCCCTTGTTATATAACTTAA 57.026 34.615 22.82 11.35 45.52 1.85
54 55 9.574516 CAAGAGCCCCTTGTTATATAACTTAAT 57.425 33.333 22.82 6.18 45.52 1.40
55 56 9.574516 AAGAGCCCCTTGTTATATAACTTAATG 57.425 33.333 22.82 11.90 37.12 1.90
56 57 8.724310 AGAGCCCCTTGTTATATAACTTAATGT 58.276 33.333 22.82 6.02 37.12 2.71
57 58 9.350951 GAGCCCCTTGTTATATAACTTAATGTT 57.649 33.333 22.82 9.58 42.31 2.71
73 74 8.166422 ACTTAATGTTAGTATAAATGCCTGCC 57.834 34.615 0.00 0.00 0.00 4.85
74 75 7.777910 ACTTAATGTTAGTATAAATGCCTGCCA 59.222 33.333 0.00 0.00 0.00 4.92
75 76 8.526667 TTAATGTTAGTATAAATGCCTGCCAA 57.473 30.769 0.00 0.00 0.00 4.52
76 77 6.639632 ATGTTAGTATAAATGCCTGCCAAG 57.360 37.500 0.00 0.00 0.00 3.61
77 78 5.750524 TGTTAGTATAAATGCCTGCCAAGA 58.249 37.500 0.00 0.00 0.00 3.02
78 79 5.588648 TGTTAGTATAAATGCCTGCCAAGAC 59.411 40.000 0.00 0.00 0.00 3.01
79 80 4.510167 AGTATAAATGCCTGCCAAGACT 57.490 40.909 0.00 0.00 0.00 3.24
80 81 4.860022 AGTATAAATGCCTGCCAAGACTT 58.140 39.130 0.00 0.00 0.00 3.01
81 82 5.264395 AGTATAAATGCCTGCCAAGACTTT 58.736 37.500 0.00 0.00 0.00 2.66
82 83 2.825861 AAATGCCTGCCAAGACTTTG 57.174 45.000 0.00 0.00 0.00 2.77
83 84 1.708341 AATGCCTGCCAAGACTTTGT 58.292 45.000 0.00 0.00 32.21 2.83
84 85 0.963962 ATGCCTGCCAAGACTTTGTG 59.036 50.000 0.00 0.00 32.21 3.33
85 86 0.395586 TGCCTGCCAAGACTTTGTGT 60.396 50.000 0.00 0.00 32.21 3.72
86 87 0.746659 GCCTGCCAAGACTTTGTGTT 59.253 50.000 0.00 0.00 32.21 3.32
87 88 1.136891 GCCTGCCAAGACTTTGTGTTT 59.863 47.619 0.00 0.00 32.21 2.83
88 89 2.360801 GCCTGCCAAGACTTTGTGTTTA 59.639 45.455 0.00 0.00 32.21 2.01
89 90 3.005791 GCCTGCCAAGACTTTGTGTTTAT 59.994 43.478 0.00 0.00 32.21 1.40
90 91 4.798574 CCTGCCAAGACTTTGTGTTTATC 58.201 43.478 0.00 0.00 32.21 1.75
91 92 4.278170 CCTGCCAAGACTTTGTGTTTATCA 59.722 41.667 0.00 0.00 32.21 2.15
92 93 5.047802 CCTGCCAAGACTTTGTGTTTATCAT 60.048 40.000 0.00 0.00 32.21 2.45
93 94 6.012658 TGCCAAGACTTTGTGTTTATCATC 57.987 37.500 0.00 0.00 32.21 2.92
94 95 5.048083 TGCCAAGACTTTGTGTTTATCATCC 60.048 40.000 0.00 0.00 32.21 3.51
95 96 5.183904 GCCAAGACTTTGTGTTTATCATCCT 59.816 40.000 0.00 0.00 32.21 3.24
96 97 6.294731 GCCAAGACTTTGTGTTTATCATCCTT 60.295 38.462 0.00 0.00 32.21 3.36
97 98 7.661040 CCAAGACTTTGTGTTTATCATCCTTT 58.339 34.615 0.00 0.00 32.21 3.11
98 99 8.143835 CCAAGACTTTGTGTTTATCATCCTTTT 58.856 33.333 0.00 0.00 32.21 2.27
99 100 8.971321 CAAGACTTTGTGTTTATCATCCTTTTG 58.029 33.333 0.00 0.00 0.00 2.44
100 101 7.661040 AGACTTTGTGTTTATCATCCTTTTGG 58.339 34.615 0.00 0.00 42.21 3.28
115 116 5.694995 TCCTTTTGGATCTGATGTAATCCC 58.305 41.667 0.00 0.00 43.23 3.85
116 117 5.433051 TCCTTTTGGATCTGATGTAATCCCT 59.567 40.000 0.00 0.00 43.23 4.20
117 118 6.068853 TCCTTTTGGATCTGATGTAATCCCTT 60.069 38.462 0.00 0.00 43.23 3.95
118 119 7.128728 TCCTTTTGGATCTGATGTAATCCCTTA 59.871 37.037 0.00 0.00 43.23 2.69
119 120 7.779798 CCTTTTGGATCTGATGTAATCCCTTAA 59.220 37.037 0.00 0.00 42.48 1.85
120 121 8.752005 TTTTGGATCTGATGTAATCCCTTAAG 57.248 34.615 0.00 0.00 44.73 1.85
121 122 7.690454 TTGGATCTGATGTAATCCCTTAAGA 57.310 36.000 3.36 0.00 44.73 2.10
122 123 7.067496 TGGATCTGATGTAATCCCTTAAGAC 57.933 40.000 3.36 0.00 44.73 3.01
123 124 6.043243 TGGATCTGATGTAATCCCTTAAGACC 59.957 42.308 3.36 0.00 44.73 3.85
124 125 6.043243 GGATCTGATGTAATCCCTTAAGACCA 59.957 42.308 3.36 0.00 44.73 4.02
125 126 7.256835 GGATCTGATGTAATCCCTTAAGACCAT 60.257 40.741 3.36 0.00 44.73 3.55
126 127 7.067496 TCTGATGTAATCCCTTAAGACCATC 57.933 40.000 3.36 6.56 44.73 3.51
127 128 6.043243 TCTGATGTAATCCCTTAAGACCATCC 59.957 42.308 3.36 0.00 44.73 3.51
128 129 5.911178 TGATGTAATCCCTTAAGACCATCCT 59.089 40.000 3.36 0.00 44.73 3.24
129 130 5.630415 TGTAATCCCTTAAGACCATCCTG 57.370 43.478 3.36 0.00 0.00 3.86
130 131 3.584733 AATCCCTTAAGACCATCCTGC 57.415 47.619 3.36 0.00 0.00 4.85
131 132 0.830648 TCCCTTAAGACCATCCTGCG 59.169 55.000 3.36 0.00 0.00 5.18
132 133 0.815615 CCCTTAAGACCATCCTGCGC 60.816 60.000 3.36 0.00 0.00 6.09
133 134 1.154205 CCTTAAGACCATCCTGCGCG 61.154 60.000 0.00 0.00 0.00 6.86
134 135 0.460284 CTTAAGACCATCCTGCGCGT 60.460 55.000 8.43 0.00 0.00 6.01
135 136 0.036765 TTAAGACCATCCTGCGCGTT 60.037 50.000 8.43 0.00 0.00 4.84
136 137 0.036765 TAAGACCATCCTGCGCGTTT 60.037 50.000 8.43 0.00 0.00 3.60
137 138 0.036765 AAGACCATCCTGCGCGTTTA 60.037 50.000 8.43 0.00 0.00 2.01
138 139 0.036765 AGACCATCCTGCGCGTTTAA 60.037 50.000 8.43 0.00 0.00 1.52
139 140 0.096454 GACCATCCTGCGCGTTTAAC 59.904 55.000 8.43 0.00 0.00 2.01
140 141 0.321298 ACCATCCTGCGCGTTTAACT 60.321 50.000 8.43 0.00 0.00 2.24
141 142 1.066716 ACCATCCTGCGCGTTTAACTA 60.067 47.619 8.43 0.00 0.00 2.24
142 143 2.210116 CCATCCTGCGCGTTTAACTAT 58.790 47.619 8.43 0.00 0.00 2.12
143 144 2.221055 CCATCCTGCGCGTTTAACTATC 59.779 50.000 8.43 0.00 0.00 2.08
144 145 1.552226 TCCTGCGCGTTTAACTATCG 58.448 50.000 8.43 0.00 0.00 2.92
145 146 0.575390 CCTGCGCGTTTAACTATCGG 59.425 55.000 8.43 0.00 0.00 4.18
146 147 0.043310 CTGCGCGTTTAACTATCGGC 60.043 55.000 8.43 0.00 0.00 5.54
147 148 0.458889 TGCGCGTTTAACTATCGGCT 60.459 50.000 8.43 0.00 0.00 5.52
148 149 1.202279 TGCGCGTTTAACTATCGGCTA 60.202 47.619 8.43 0.00 0.00 3.93
149 150 2.056577 GCGCGTTTAACTATCGGCTAT 58.943 47.619 8.43 0.00 0.00 2.97
150 151 2.473984 GCGCGTTTAACTATCGGCTATT 59.526 45.455 8.43 0.00 0.00 1.73
151 152 3.060070 GCGCGTTTAACTATCGGCTATTT 60.060 43.478 8.43 0.00 0.00 1.40
152 153 4.685020 CGCGTTTAACTATCGGCTATTTC 58.315 43.478 0.00 0.00 0.00 2.17
153 154 4.443394 CGCGTTTAACTATCGGCTATTTCT 59.557 41.667 0.00 0.00 0.00 2.52
154 155 5.051240 CGCGTTTAACTATCGGCTATTTCTT 60.051 40.000 0.00 0.00 0.00 2.52
155 156 6.127403 GCGTTTAACTATCGGCTATTTCTTG 58.873 40.000 0.00 0.00 0.00 3.02
156 157 6.127403 CGTTTAACTATCGGCTATTTCTTGC 58.873 40.000 0.00 0.00 0.00 4.01
157 158 6.018994 CGTTTAACTATCGGCTATTTCTTGCT 60.019 38.462 0.00 0.00 0.00 3.91
158 159 7.465513 CGTTTAACTATCGGCTATTTCTTGCTT 60.466 37.037 0.00 0.00 0.00 3.91
159 160 8.823818 GTTTAACTATCGGCTATTTCTTGCTTA 58.176 33.333 0.00 0.00 0.00 3.09
160 161 8.589335 TTAACTATCGGCTATTTCTTGCTTAG 57.411 34.615 0.00 0.00 0.00 2.18
161 162 6.406692 ACTATCGGCTATTTCTTGCTTAGA 57.593 37.500 0.00 0.00 0.00 2.10
162 163 6.217294 ACTATCGGCTATTTCTTGCTTAGAC 58.783 40.000 0.00 0.00 30.90 2.59
163 164 4.737855 TCGGCTATTTCTTGCTTAGACT 57.262 40.909 0.00 0.00 30.90 3.24
164 165 4.433615 TCGGCTATTTCTTGCTTAGACTG 58.566 43.478 0.00 0.00 30.90 3.51
165 166 3.001736 CGGCTATTTCTTGCTTAGACTGC 59.998 47.826 0.00 0.00 30.90 4.40
166 167 4.195416 GGCTATTTCTTGCTTAGACTGCT 58.805 43.478 0.00 0.00 30.90 4.24
167 168 4.034975 GGCTATTTCTTGCTTAGACTGCTG 59.965 45.833 0.00 0.00 30.90 4.41
168 169 4.633565 GCTATTTCTTGCTTAGACTGCTGT 59.366 41.667 0.00 0.00 30.90 4.40
169 170 5.447010 GCTATTTCTTGCTTAGACTGCTGTG 60.447 44.000 0.00 0.00 30.90 3.66
170 171 3.475566 TTCTTGCTTAGACTGCTGTGT 57.524 42.857 0.00 0.00 30.90 3.72
171 172 2.759191 TCTTGCTTAGACTGCTGTGTG 58.241 47.619 0.00 0.00 0.00 3.82
172 173 1.802960 CTTGCTTAGACTGCTGTGTGG 59.197 52.381 0.00 0.00 0.00 4.17
173 174 0.758734 TGCTTAGACTGCTGTGTGGT 59.241 50.000 0.00 0.00 0.00 4.16
174 175 1.967779 TGCTTAGACTGCTGTGTGGTA 59.032 47.619 0.00 0.00 0.00 3.25
175 176 2.567169 TGCTTAGACTGCTGTGTGGTAT 59.433 45.455 0.00 0.00 0.00 2.73
176 177 2.932614 GCTTAGACTGCTGTGTGGTATG 59.067 50.000 0.00 0.00 0.00 2.39
177 178 2.672961 TAGACTGCTGTGTGGTATGC 57.327 50.000 0.00 0.00 0.00 3.14
178 179 0.979665 AGACTGCTGTGTGGTATGCT 59.020 50.000 0.00 0.00 0.00 3.79
179 180 1.349026 AGACTGCTGTGTGGTATGCTT 59.651 47.619 0.00 0.00 0.00 3.91
180 181 2.154462 GACTGCTGTGTGGTATGCTTT 58.846 47.619 0.00 0.00 0.00 3.51
181 182 2.554032 GACTGCTGTGTGGTATGCTTTT 59.446 45.455 0.00 0.00 0.00 2.27
182 183 3.750371 ACTGCTGTGTGGTATGCTTTTA 58.250 40.909 0.00 0.00 0.00 1.52
183 184 4.141287 ACTGCTGTGTGGTATGCTTTTAA 58.859 39.130 0.00 0.00 0.00 1.52
184 185 4.582656 ACTGCTGTGTGGTATGCTTTTAAA 59.417 37.500 0.00 0.00 0.00 1.52
185 186 5.068460 ACTGCTGTGTGGTATGCTTTTAAAA 59.932 36.000 0.00 0.00 0.00 1.52
186 187 5.285651 TGCTGTGTGGTATGCTTTTAAAAC 58.714 37.500 0.00 0.00 0.00 2.43
187 188 5.163509 TGCTGTGTGGTATGCTTTTAAAACA 60.164 36.000 0.00 1.50 0.00 2.83
188 189 5.402270 GCTGTGTGGTATGCTTTTAAAACAG 59.598 40.000 0.00 1.17 35.54 3.16
189 190 5.285651 TGTGTGGTATGCTTTTAAAACAGC 58.714 37.500 5.14 5.14 36.49 4.40
190 191 4.684242 GTGTGGTATGCTTTTAAAACAGCC 59.316 41.667 8.95 11.77 34.91 4.85
191 192 4.342378 TGTGGTATGCTTTTAAAACAGCCA 59.658 37.500 8.95 13.49 34.91 4.75
192 193 5.011533 TGTGGTATGCTTTTAAAACAGCCAT 59.988 36.000 19.51 13.13 34.91 4.40
193 194 6.209589 TGTGGTATGCTTTTAAAACAGCCATA 59.790 34.615 19.51 16.88 34.91 2.74
194 195 7.093992 GTGGTATGCTTTTAAAACAGCCATAA 58.906 34.615 19.51 3.95 34.91 1.90
195 196 7.763985 GTGGTATGCTTTTAAAACAGCCATAAT 59.236 33.333 19.51 8.78 34.91 1.28
196 197 8.972127 TGGTATGCTTTTAAAACAGCCATAATA 58.028 29.630 8.95 0.00 34.91 0.98
197 198 9.810545 GGTATGCTTTTAAAACAGCCATAATAA 57.189 29.630 8.95 0.00 34.91 1.40
201 202 9.988815 TGCTTTTAAAACAGCCATAATAAAAGA 57.011 25.926 18.32 7.30 40.31 2.52
230 231 5.314923 TGCTCATTCTTTCAATACTTGGC 57.685 39.130 0.00 0.00 0.00 4.52
231 232 5.012239 TGCTCATTCTTTCAATACTTGGCT 58.988 37.500 0.00 0.00 0.00 4.75
232 233 5.477984 TGCTCATTCTTTCAATACTTGGCTT 59.522 36.000 0.00 0.00 0.00 4.35
233 234 6.658816 TGCTCATTCTTTCAATACTTGGCTTA 59.341 34.615 0.00 0.00 0.00 3.09
234 235 6.969473 GCTCATTCTTTCAATACTTGGCTTAC 59.031 38.462 0.00 0.00 0.00 2.34
235 236 7.362056 GCTCATTCTTTCAATACTTGGCTTACA 60.362 37.037 0.00 0.00 0.00 2.41
236 237 7.816640 TCATTCTTTCAATACTTGGCTTACAC 58.183 34.615 0.00 0.00 0.00 2.90
237 238 7.665559 TCATTCTTTCAATACTTGGCTTACACT 59.334 33.333 0.00 0.00 0.00 3.55
238 239 7.435068 TTCTTTCAATACTTGGCTTACACTC 57.565 36.000 0.00 0.00 0.00 3.51
239 240 5.637810 TCTTTCAATACTTGGCTTACACTCG 59.362 40.000 0.00 0.00 0.00 4.18
240 241 3.857052 TCAATACTTGGCTTACACTCGG 58.143 45.455 0.00 0.00 0.00 4.63
241 242 2.311124 ATACTTGGCTTACACTCGGC 57.689 50.000 0.00 0.00 0.00 5.54
242 243 0.248289 TACTTGGCTTACACTCGGCC 59.752 55.000 0.00 0.00 45.45 6.13
243 244 1.296715 CTTGGCTTACACTCGGCCT 59.703 57.895 0.00 0.00 45.45 5.19
244 245 0.321653 CTTGGCTTACACTCGGCCTT 60.322 55.000 0.00 0.00 45.45 4.35
245 246 0.109723 TTGGCTTACACTCGGCCTTT 59.890 50.000 0.00 0.00 45.45 3.11
246 247 0.605319 TGGCTTACACTCGGCCTTTG 60.605 55.000 0.00 0.00 45.45 2.77
247 248 1.502190 GCTTACACTCGGCCTTTGC 59.498 57.895 0.00 0.00 0.00 3.68
248 249 1.787847 CTTACACTCGGCCTTTGCG 59.212 57.895 0.00 0.00 38.85 4.85
249 250 2.240612 CTTACACTCGGCCTTTGCGC 62.241 60.000 0.00 0.00 38.85 6.09
266 267 4.114997 CCATTGGCGCAACGGGTC 62.115 66.667 10.83 0.00 0.00 4.46
267 268 3.361158 CATTGGCGCAACGGGTCA 61.361 61.111 10.83 0.00 0.00 4.02
268 269 2.361104 ATTGGCGCAACGGGTCAT 60.361 55.556 10.83 0.00 28.70 3.06
269 270 2.406616 ATTGGCGCAACGGGTCATC 61.407 57.895 10.83 0.00 28.70 2.92
270 271 2.819984 ATTGGCGCAACGGGTCATCT 62.820 55.000 10.83 0.00 28.70 2.90
388 392 5.827797 ACTATATGCACTTGGTACCAATTGG 59.172 40.000 33.62 23.31 37.17 3.16
389 393 0.965439 TGCACTTGGTACCAATTGGC 59.035 50.000 33.62 29.78 37.17 4.52
393 397 3.556843 GCACTTGGTACCAATTGGCATTT 60.557 43.478 33.62 7.49 37.17 2.32
394 398 3.995705 CACTTGGTACCAATTGGCATTTG 59.004 43.478 28.68 16.95 39.32 2.32
396 400 1.067283 TGGTACCAATTGGCATTTGCG 60.067 47.619 24.79 11.18 43.26 4.85
397 401 1.203523 GGTACCAATTGGCATTTGCGA 59.796 47.619 24.79 3.96 43.26 5.10
399 403 2.298411 ACCAATTGGCATTTGCGATC 57.702 45.000 24.79 0.00 43.26 3.69
400 404 1.549620 ACCAATTGGCATTTGCGATCA 59.450 42.857 24.79 0.00 43.26 2.92
401 405 2.198406 CCAATTGGCATTTGCGATCAG 58.802 47.619 12.53 0.00 43.26 2.90
404 408 1.825090 TTGGCATTTGCGATCAGAGT 58.175 45.000 0.00 0.00 43.26 3.24
405 409 1.372582 TGGCATTTGCGATCAGAGTC 58.627 50.000 0.00 0.00 43.26 3.36
406 410 1.065926 TGGCATTTGCGATCAGAGTCT 60.066 47.619 0.00 0.00 43.26 3.24
410 414 4.387256 GGCATTTGCGATCAGAGTCTATAC 59.613 45.833 0.00 0.00 43.26 1.47
558 567 0.038166 TGCTGAGGGAAAAAGCGGAT 59.962 50.000 0.00 0.00 39.88 4.18
608 626 8.831550 AGTTTCTTTGATCTCAGTTTCAGTTAC 58.168 33.333 0.00 0.00 0.00 2.50
646 664 3.258372 TGAGTGTGTGAGGACATAACTCC 59.742 47.826 13.86 0.00 42.51 3.85
647 665 2.231478 AGTGTGTGAGGACATAACTCCG 59.769 50.000 0.00 0.00 35.20 4.63
980 1000 4.190001 TGTGCACAAACAAATCAAGCAAT 58.810 34.783 19.28 0.00 31.78 3.56
989 1009 1.552578 AATCAAGCAATCCAGCTGCA 58.447 45.000 8.66 0.00 45.89 4.41
1249 1278 1.887198 AGGACATCGTCGACAAGTTCT 59.113 47.619 17.16 11.32 32.65 3.01
1306 1335 2.032549 CCACACAAACTCAAGAAGCTCG 60.033 50.000 0.00 0.00 0.00 5.03
1344 1373 1.597742 TGTTCAGCAAGAGCAAGACC 58.402 50.000 0.00 0.00 45.49 3.85
1451 1486 2.646930 CATGGCTGCTAATCCAGTTGA 58.353 47.619 0.00 0.00 35.57 3.18
1477 1512 2.307768 TCACTATTGACCCTCGCCTAG 58.692 52.381 0.00 0.00 0.00 3.02
1713 1748 5.523916 CCAAAAGAAACGACAGAGAAAGAGA 59.476 40.000 0.00 0.00 0.00 3.10
1878 1913 0.687427 ACACTGCTGCCAAGGGTTTT 60.687 50.000 0.00 0.00 0.00 2.43
2225 2260 0.742281 CGCAATAGCAGGAGCACACT 60.742 55.000 0.00 0.00 45.49 3.55
2330 2368 2.561956 CGACGCCCCATATCCGAGT 61.562 63.158 0.00 0.00 0.00 4.18
2333 2371 2.048127 GCCCCATATCCGAGTCGC 60.048 66.667 7.12 0.00 0.00 5.19
2334 2372 2.574955 GCCCCATATCCGAGTCGCT 61.575 63.158 7.12 0.00 0.00 4.93
2335 2373 1.587054 CCCCATATCCGAGTCGCTC 59.413 63.158 7.12 0.00 0.00 5.03
3151 3331 4.640771 GGCTATACCAATGGGATCAAGA 57.359 45.455 0.00 0.00 38.86 3.02
3152 3332 5.184892 GGCTATACCAATGGGATCAAGAT 57.815 43.478 0.00 0.00 38.86 2.40
3153 3333 6.313519 GGCTATACCAATGGGATCAAGATA 57.686 41.667 0.00 0.00 38.86 1.98
3154 3334 6.116126 GGCTATACCAATGGGATCAAGATAC 58.884 44.000 0.00 0.00 38.86 2.24
3155 3335 6.069963 GGCTATACCAATGGGATCAAGATACT 60.070 42.308 0.00 0.00 38.86 2.12
3156 3336 7.044798 GCTATACCAATGGGATCAAGATACTC 58.955 42.308 0.00 0.00 38.05 2.59
3157 3337 7.093112 GCTATACCAATGGGATCAAGATACTCT 60.093 40.741 0.00 0.00 38.05 3.24
3158 3338 5.559148 ACCAATGGGATCAAGATACTCTC 57.441 43.478 3.55 0.00 38.05 3.20
3159 3339 5.222870 ACCAATGGGATCAAGATACTCTCT 58.777 41.667 3.55 0.00 38.05 3.10
3160 3340 6.385443 ACCAATGGGATCAAGATACTCTCTA 58.615 40.000 3.55 0.00 38.05 2.43
3161 3341 7.021873 ACCAATGGGATCAAGATACTCTCTAT 58.978 38.462 3.55 0.00 38.05 1.98
3162 3342 7.515514 ACCAATGGGATCAAGATACTCTCTATT 59.484 37.037 3.55 0.00 38.05 1.73
3163 3343 8.381636 CCAATGGGATCAAGATACTCTCTATTT 58.618 37.037 0.00 0.00 35.59 1.40
3171 3351 9.703892 ATCAAGATACTCTCTATTTTCGGATTG 57.296 33.333 0.00 0.00 32.41 2.67
3224 3404 6.054860 AGCACTGTATGATAACCTCAAAGT 57.945 37.500 0.00 0.00 37.44 2.66
3252 3432 2.429971 TGATTGCAGTGCTTTTGTTCCA 59.570 40.909 17.60 0.55 0.00 3.53
3453 3635 7.608761 TCAAGTAGTAAATGGGAAAATTAGCGT 59.391 33.333 0.00 0.00 0.00 5.07
3455 3637 4.993905 AGTAAATGGGAAAATTAGCGTGC 58.006 39.130 0.00 0.00 0.00 5.34
3458 3640 2.192664 TGGGAAAATTAGCGTGCTGA 57.807 45.000 4.25 0.00 0.00 4.26
3479 3703 9.899661 TGCTGAACACACCTTATTATATAGTTT 57.100 29.630 0.00 0.00 0.00 2.66
3535 3768 6.352137 GGGAAAAATAGCATCAAACCCAGAAT 60.352 38.462 0.00 0.00 35.41 2.40
3556 3789 9.591792 CAGAATGTTTGAGTTAGATATGAGTGA 57.408 33.333 0.00 0.00 0.00 3.41
3629 3868 8.872845 GGTCATTCTTGTATATTTTGCAAAAGG 58.127 33.333 27.08 6.43 28.96 3.11
3848 4117 7.986889 TCGATGAAATGGAATCAAACTCTGATA 59.013 33.333 0.00 0.00 44.43 2.15
3849 4118 8.615211 CGATGAAATGGAATCAAACTCTGATAA 58.385 33.333 0.00 0.00 44.43 1.75
3850 4119 9.947669 GATGAAATGGAATCAAACTCTGATAAG 57.052 33.333 0.00 0.00 44.43 1.73
3851 4120 8.284945 TGAAATGGAATCAAACTCTGATAAGG 57.715 34.615 0.00 0.00 44.43 2.69
3852 4121 7.890127 TGAAATGGAATCAAACTCTGATAAGGT 59.110 33.333 0.00 0.00 44.43 3.50
3853 4122 7.636150 AATGGAATCAAACTCTGATAAGGTG 57.364 36.000 0.00 0.00 44.43 4.00
3860 4129 5.181811 TCAAACTCTGATAAGGTGTTGCATG 59.818 40.000 0.00 0.00 0.00 4.06
3885 4154 0.930726 CTCTCTCCTACACCCCTCCT 59.069 60.000 0.00 0.00 0.00 3.69
3898 4167 4.263949 ACACCCCTCCTTTTCCTTATTCAG 60.264 45.833 0.00 0.00 0.00 3.02
3899 4168 3.923425 ACCCCTCCTTTTCCTTATTCAGT 59.077 43.478 0.00 0.00 0.00 3.41
3900 4169 5.045140 CACCCCTCCTTTTCCTTATTCAGTA 60.045 44.000 0.00 0.00 0.00 2.74
3901 4170 5.554350 ACCCCTCCTTTTCCTTATTCAGTAA 59.446 40.000 0.00 0.00 0.00 2.24
3902 4171 6.219772 ACCCCTCCTTTTCCTTATTCAGTAAT 59.780 38.462 0.00 0.00 0.00 1.89
3903 4172 7.126061 CCCCTCCTTTTCCTTATTCAGTAATT 58.874 38.462 0.00 0.00 0.00 1.40
3904 4173 7.619698 CCCCTCCTTTTCCTTATTCAGTAATTT 59.380 37.037 0.00 0.00 0.00 1.82
3905 4174 9.035890 CCCTCCTTTTCCTTATTCAGTAATTTT 57.964 33.333 0.00 0.00 0.00 1.82
3927 4196 3.750501 TTGAAAAGGAGGAATACCCCC 57.249 47.619 0.00 0.00 36.73 5.40
3928 4197 1.562475 TGAAAAGGAGGAATACCCCCG 59.438 52.381 0.00 0.00 36.73 5.73
3929 4198 0.924090 AAAAGGAGGAATACCCCCGG 59.076 55.000 0.00 0.00 36.73 5.73
3930 4199 1.642513 AAAGGAGGAATACCCCCGGC 61.643 60.000 0.00 0.00 36.73 6.13
3931 4200 3.567209 GGAGGAATACCCCCGGCC 61.567 72.222 0.00 0.00 36.73 6.13
3932 4201 2.447959 GAGGAATACCCCCGGCCT 60.448 66.667 0.00 0.00 36.73 5.19
3933 4202 2.447959 AGGAATACCCCCGGCCTC 60.448 66.667 0.00 0.00 36.73 4.70
3934 4203 2.447959 GGAATACCCCCGGCCTCT 60.448 66.667 0.00 0.00 0.00 3.69
3935 4204 2.819284 GGAATACCCCCGGCCTCTG 61.819 68.421 0.00 0.00 0.00 3.35
3936 4205 3.477578 GAATACCCCCGGCCTCTGC 62.478 68.421 0.00 0.00 0.00 4.26
3937 4206 4.815973 ATACCCCCGGCCTCTGCA 62.816 66.667 0.00 0.00 40.13 4.41
3938 4207 4.815973 TACCCCCGGCCTCTGCAT 62.816 66.667 0.00 0.00 40.13 3.96
3940 4209 4.883354 CCCCCGGCCTCTGCATTC 62.883 72.222 0.00 0.00 40.13 2.67
3941 4210 4.883354 CCCCGGCCTCTGCATTCC 62.883 72.222 0.00 0.00 40.13 3.01
3942 4211 3.801997 CCCGGCCTCTGCATTCCT 61.802 66.667 0.00 0.00 40.13 3.36
3943 4212 2.273449 CCGGCCTCTGCATTCCTT 59.727 61.111 0.00 0.00 40.13 3.36
3944 4213 1.526887 CCGGCCTCTGCATTCCTTA 59.473 57.895 0.00 0.00 40.13 2.69
3945 4214 0.109342 CCGGCCTCTGCATTCCTTAT 59.891 55.000 0.00 0.00 40.13 1.73
3946 4215 1.477558 CCGGCCTCTGCATTCCTTATT 60.478 52.381 0.00 0.00 40.13 1.40
3947 4216 1.876156 CGGCCTCTGCATTCCTTATTC 59.124 52.381 0.00 0.00 40.13 1.75
3948 4217 2.746142 CGGCCTCTGCATTCCTTATTCA 60.746 50.000 0.00 0.00 40.13 2.57
3955 4225 6.769822 CCTCTGCATTCCTTATTCAGTAATGT 59.230 38.462 0.00 0.00 30.59 2.71
4036 4310 8.808240 TTTACATACTTAGGGGGATTGTAGAT 57.192 34.615 0.00 0.00 0.00 1.98
4037 4311 6.688073 ACATACTTAGGGGGATTGTAGATG 57.312 41.667 0.00 0.00 0.00 2.90
4194 4471 6.376299 AGGACAATCACAACTACTCGTATACA 59.624 38.462 3.32 0.00 0.00 2.29
4210 4487 4.893795 GTATACACGAAGTTGCCACAATC 58.106 43.478 0.00 0.00 41.61 2.67
4258 4535 8.526147 CAACCACTTTCTCTTGATTTATCCAAT 58.474 33.333 0.00 0.00 0.00 3.16
4288 4569 6.704937 TCATAGAAGATTATCTTGTGCTGCAG 59.295 38.462 12.63 10.11 36.73 4.41
4303 4584 3.390967 TGCTGCAGTAGAATGGCCTAATA 59.609 43.478 16.64 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.102993 TGCAACTTGCTTATATTGAGTAGACA 58.897 34.615 14.78 0.00 45.31 3.41
5 6 7.539712 TGCAACTTGCTTATATTGAGTAGAC 57.460 36.000 14.78 0.00 45.31 2.59
6 7 8.040727 TCTTGCAACTTGCTTATATTGAGTAGA 58.959 33.333 14.78 0.00 45.31 2.59
8 9 7.201644 GCTCTTGCAACTTGCTTATATTGAGTA 60.202 37.037 14.78 0.00 45.31 2.59
9 10 6.404074 GCTCTTGCAACTTGCTTATATTGAGT 60.404 38.462 14.78 0.00 45.31 3.41
10 11 5.970023 GCTCTTGCAACTTGCTTATATTGAG 59.030 40.000 14.78 11.14 45.31 3.02
12 13 5.039333 GGCTCTTGCAACTTGCTTATATTG 58.961 41.667 14.78 1.07 45.31 1.90
13 14 4.098501 GGGCTCTTGCAACTTGCTTATATT 59.901 41.667 14.78 0.00 45.31 1.28
14 15 3.633986 GGGCTCTTGCAACTTGCTTATAT 59.366 43.478 14.78 0.00 45.31 0.86
15 16 3.016736 GGGCTCTTGCAACTTGCTTATA 58.983 45.455 14.78 0.00 45.31 0.98
16 17 1.821136 GGGCTCTTGCAACTTGCTTAT 59.179 47.619 14.78 0.00 45.31 1.73
17 18 1.247567 GGGCTCTTGCAACTTGCTTA 58.752 50.000 14.78 2.66 45.31 3.09
18 19 1.466851 GGGGCTCTTGCAACTTGCTT 61.467 55.000 14.78 0.00 45.31 3.91
19 20 1.905354 GGGGCTCTTGCAACTTGCT 60.905 57.895 14.78 0.00 45.31 3.91
20 21 1.466851 AAGGGGCTCTTGCAACTTGC 61.467 55.000 0.00 6.82 45.29 4.01
21 22 0.316204 CAAGGGGCTCTTGCAACTTG 59.684 55.000 15.26 9.87 45.24 3.16
22 23 2.737503 CAAGGGGCTCTTGCAACTT 58.262 52.632 15.26 0.00 45.24 2.66
23 24 4.507969 CAAGGGGCTCTTGCAACT 57.492 55.556 15.26 0.00 45.24 3.16
29 30 9.574516 CATTAAGTTATATAACAAGGGGCTCTT 57.425 33.333 24.05 10.92 38.62 2.85
30 31 8.724310 ACATTAAGTTATATAACAAGGGGCTCT 58.276 33.333 24.05 1.14 38.62 4.09
31 32 8.919777 ACATTAAGTTATATAACAAGGGGCTC 57.080 34.615 24.05 0.00 38.62 4.70
47 48 8.630037 GGCAGGCATTTATACTAACATTAAGTT 58.370 33.333 0.00 0.00 44.27 2.66
48 49 7.777910 TGGCAGGCATTTATACTAACATTAAGT 59.222 33.333 0.00 0.00 0.00 2.24
49 50 8.165239 TGGCAGGCATTTATACTAACATTAAG 57.835 34.615 0.00 0.00 0.00 1.85
50 51 8.526667 TTGGCAGGCATTTATACTAACATTAA 57.473 30.769 0.00 0.00 0.00 1.40
51 52 7.996066 TCTTGGCAGGCATTTATACTAACATTA 59.004 33.333 0.00 0.00 0.00 1.90
52 53 6.833416 TCTTGGCAGGCATTTATACTAACATT 59.167 34.615 0.00 0.00 0.00 2.71
53 54 6.263168 GTCTTGGCAGGCATTTATACTAACAT 59.737 38.462 0.00 0.00 0.00 2.71
54 55 5.588648 GTCTTGGCAGGCATTTATACTAACA 59.411 40.000 0.00 0.00 0.00 2.41
55 56 5.823045 AGTCTTGGCAGGCATTTATACTAAC 59.177 40.000 0.00 0.00 0.00 2.34
56 57 6.001449 AGTCTTGGCAGGCATTTATACTAA 57.999 37.500 0.00 0.00 0.00 2.24
57 58 5.630415 AGTCTTGGCAGGCATTTATACTA 57.370 39.130 0.00 0.00 0.00 1.82
58 59 4.510167 AGTCTTGGCAGGCATTTATACT 57.490 40.909 0.00 0.00 0.00 2.12
59 60 5.105756 ACAAAGTCTTGGCAGGCATTTATAC 60.106 40.000 0.00 0.00 36.82 1.47
60 61 5.016173 ACAAAGTCTTGGCAGGCATTTATA 58.984 37.500 0.00 0.00 36.82 0.98
61 62 3.834231 ACAAAGTCTTGGCAGGCATTTAT 59.166 39.130 0.00 0.00 36.82 1.40
62 63 3.005684 CACAAAGTCTTGGCAGGCATTTA 59.994 43.478 0.00 0.00 36.82 1.40
63 64 2.041701 ACAAAGTCTTGGCAGGCATTT 58.958 42.857 0.00 0.00 36.82 2.32
64 65 1.342174 CACAAAGTCTTGGCAGGCATT 59.658 47.619 0.00 0.00 36.82 3.56
65 66 0.963962 CACAAAGTCTTGGCAGGCAT 59.036 50.000 0.00 0.00 36.82 4.40
66 67 0.395586 ACACAAAGTCTTGGCAGGCA 60.396 50.000 0.00 0.00 36.82 4.75
67 68 0.746659 AACACAAAGTCTTGGCAGGC 59.253 50.000 0.00 0.00 36.82 4.85
68 69 4.278170 TGATAAACACAAAGTCTTGGCAGG 59.722 41.667 0.00 0.00 36.82 4.85
69 70 5.437289 TGATAAACACAAAGTCTTGGCAG 57.563 39.130 0.00 0.00 36.82 4.85
70 71 5.048083 GGATGATAAACACAAAGTCTTGGCA 60.048 40.000 0.00 0.00 36.82 4.92
71 72 5.183904 AGGATGATAAACACAAAGTCTTGGC 59.816 40.000 0.00 0.00 36.82 4.52
72 73 6.824305 AGGATGATAAACACAAAGTCTTGG 57.176 37.500 0.00 0.00 36.82 3.61
73 74 8.971321 CAAAAGGATGATAAACACAAAGTCTTG 58.029 33.333 0.00 0.00 38.61 3.02
74 75 8.143835 CCAAAAGGATGATAAACACAAAGTCTT 58.856 33.333 0.00 0.00 0.00 3.01
75 76 7.505585 TCCAAAAGGATGATAAACACAAAGTCT 59.494 33.333 0.00 0.00 0.00 3.24
76 77 7.657336 TCCAAAAGGATGATAAACACAAAGTC 58.343 34.615 0.00 0.00 0.00 3.01
77 78 7.595819 TCCAAAAGGATGATAAACACAAAGT 57.404 32.000 0.00 0.00 0.00 2.66
78 79 8.526147 AGATCCAAAAGGATGATAAACACAAAG 58.474 33.333 1.01 0.00 0.00 2.77
79 80 8.306038 CAGATCCAAAAGGATGATAAACACAAA 58.694 33.333 1.01 0.00 0.00 2.83
80 81 7.669304 TCAGATCCAAAAGGATGATAAACACAA 59.331 33.333 1.01 0.00 0.00 3.33
81 82 7.174413 TCAGATCCAAAAGGATGATAAACACA 58.826 34.615 1.01 0.00 0.00 3.72
82 83 7.630242 TCAGATCCAAAAGGATGATAAACAC 57.370 36.000 1.01 0.00 0.00 3.32
83 84 7.835682 ACATCAGATCCAAAAGGATGATAAACA 59.164 33.333 1.01 0.00 38.87 2.83
84 85 8.230472 ACATCAGATCCAAAAGGATGATAAAC 57.770 34.615 1.01 0.00 38.87 2.01
85 86 9.919416 TTACATCAGATCCAAAAGGATGATAAA 57.081 29.630 1.01 0.00 38.87 1.40
87 88 9.730705 GATTACATCAGATCCAAAAGGATGATA 57.269 33.333 1.01 0.00 38.87 2.15
88 89 7.668886 GGATTACATCAGATCCAAAAGGATGAT 59.331 37.037 1.01 0.00 41.21 2.45
89 90 7.000472 GGATTACATCAGATCCAAAAGGATGA 59.000 38.462 1.01 0.00 41.21 2.92
90 91 6.208204 GGGATTACATCAGATCCAAAAGGATG 59.792 42.308 1.01 0.00 42.94 3.51
91 92 6.103797 AGGGATTACATCAGATCCAAAAGGAT 59.896 38.462 0.00 0.00 42.94 3.24
92 93 5.433051 AGGGATTACATCAGATCCAAAAGGA 59.567 40.000 4.91 0.00 42.94 3.36
93 94 5.699143 AGGGATTACATCAGATCCAAAAGG 58.301 41.667 4.91 0.00 42.94 3.11
94 95 8.752005 TTAAGGGATTACATCAGATCCAAAAG 57.248 34.615 4.91 0.00 42.94 2.27
95 96 8.556589 TCTTAAGGGATTACATCAGATCCAAAA 58.443 33.333 1.85 0.00 42.94 2.44
96 97 7.993183 GTCTTAAGGGATTACATCAGATCCAAA 59.007 37.037 1.85 0.00 42.94 3.28
97 98 7.420214 GGTCTTAAGGGATTACATCAGATCCAA 60.420 40.741 1.85 0.00 42.94 3.53
98 99 6.043243 GGTCTTAAGGGATTACATCAGATCCA 59.957 42.308 1.85 0.00 42.94 3.41
99 100 6.043243 TGGTCTTAAGGGATTACATCAGATCC 59.957 42.308 1.85 0.00 40.90 3.36
100 101 7.067496 TGGTCTTAAGGGATTACATCAGATC 57.933 40.000 1.85 0.00 0.00 2.75
101 102 7.256835 GGATGGTCTTAAGGGATTACATCAGAT 60.257 40.741 1.85 0.00 36.20 2.90
102 103 6.043243 GGATGGTCTTAAGGGATTACATCAGA 59.957 42.308 1.85 0.00 36.20 3.27
103 104 6.043706 AGGATGGTCTTAAGGGATTACATCAG 59.956 42.308 1.85 0.00 36.20 2.90
104 105 5.911178 AGGATGGTCTTAAGGGATTACATCA 59.089 40.000 1.85 0.00 36.20 3.07
105 106 6.234177 CAGGATGGTCTTAAGGGATTACATC 58.766 44.000 1.85 7.72 34.33 3.06
106 107 5.456763 GCAGGATGGTCTTAAGGGATTACAT 60.457 44.000 1.85 0.00 35.86 2.29
107 108 4.141482 GCAGGATGGTCTTAAGGGATTACA 60.141 45.833 1.85 0.00 35.86 2.41
108 109 4.390264 GCAGGATGGTCTTAAGGGATTAC 58.610 47.826 1.85 0.00 35.86 1.89
109 110 3.071023 CGCAGGATGGTCTTAAGGGATTA 59.929 47.826 1.85 0.00 35.86 1.75
110 111 2.158755 CGCAGGATGGTCTTAAGGGATT 60.159 50.000 1.85 0.00 35.86 3.01
111 112 1.417890 CGCAGGATGGTCTTAAGGGAT 59.582 52.381 1.85 0.00 35.86 3.85
112 113 0.830648 CGCAGGATGGTCTTAAGGGA 59.169 55.000 1.85 0.00 35.86 4.20
113 114 0.815615 GCGCAGGATGGTCTTAAGGG 60.816 60.000 0.30 0.00 35.86 3.95
114 115 1.154205 CGCGCAGGATGGTCTTAAGG 61.154 60.000 8.75 0.00 35.86 2.69
115 116 0.460284 ACGCGCAGGATGGTCTTAAG 60.460 55.000 5.73 0.00 35.86 1.85
116 117 0.036765 AACGCGCAGGATGGTCTTAA 60.037 50.000 5.73 0.00 35.86 1.85
117 118 0.036765 AAACGCGCAGGATGGTCTTA 60.037 50.000 5.73 0.00 35.86 2.10
118 119 0.036765 TAAACGCGCAGGATGGTCTT 60.037 50.000 5.73 0.00 35.86 3.01
119 120 0.036765 TTAAACGCGCAGGATGGTCT 60.037 50.000 5.73 0.00 35.86 3.85
120 121 0.096454 GTTAAACGCGCAGGATGGTC 59.904 55.000 5.73 0.00 35.86 4.02
121 122 0.321298 AGTTAAACGCGCAGGATGGT 60.321 50.000 5.73 0.00 35.86 3.55
122 123 1.647346 TAGTTAAACGCGCAGGATGG 58.353 50.000 5.73 0.00 35.86 3.51
123 124 2.097396 CGATAGTTAAACGCGCAGGATG 60.097 50.000 5.73 0.00 40.87 3.51
124 125 2.124903 CGATAGTTAAACGCGCAGGAT 58.875 47.619 5.73 0.00 0.00 3.24
125 126 1.552226 CGATAGTTAAACGCGCAGGA 58.448 50.000 5.73 0.00 0.00 3.86
126 127 0.575390 CCGATAGTTAAACGCGCAGG 59.425 55.000 5.73 0.00 0.00 4.85
127 128 0.043310 GCCGATAGTTAAACGCGCAG 60.043 55.000 5.73 2.42 0.00 5.18
128 129 0.458889 AGCCGATAGTTAAACGCGCA 60.459 50.000 5.73 0.00 0.00 6.09
129 130 1.480205 TAGCCGATAGTTAAACGCGC 58.520 50.000 5.73 0.00 0.00 6.86
130 131 4.443394 AGAAATAGCCGATAGTTAAACGCG 59.557 41.667 3.53 3.53 0.00 6.01
131 132 5.902051 AGAAATAGCCGATAGTTAAACGC 57.098 39.130 0.00 0.00 0.00 4.84
132 133 6.018994 AGCAAGAAATAGCCGATAGTTAAACG 60.019 38.462 0.00 0.00 0.00 3.60
133 134 7.247929 AGCAAGAAATAGCCGATAGTTAAAC 57.752 36.000 0.00 0.00 0.00 2.01
134 135 7.859325 AAGCAAGAAATAGCCGATAGTTAAA 57.141 32.000 0.00 0.00 0.00 1.52
135 136 8.418662 TCTAAGCAAGAAATAGCCGATAGTTAA 58.581 33.333 0.00 0.00 0.00 2.01
136 137 7.866393 GTCTAAGCAAGAAATAGCCGATAGTTA 59.134 37.037 0.00 0.00 35.47 2.24
137 138 6.702282 GTCTAAGCAAGAAATAGCCGATAGTT 59.298 38.462 0.00 0.00 35.47 2.24
138 139 6.041069 AGTCTAAGCAAGAAATAGCCGATAGT 59.959 38.462 0.00 0.00 35.47 2.12
139 140 6.364706 CAGTCTAAGCAAGAAATAGCCGATAG 59.635 42.308 0.00 0.00 35.47 2.08
140 141 6.216569 CAGTCTAAGCAAGAAATAGCCGATA 58.783 40.000 0.00 0.00 35.47 2.92
141 142 5.053145 CAGTCTAAGCAAGAAATAGCCGAT 58.947 41.667 0.00 0.00 35.47 4.18
142 143 4.433615 CAGTCTAAGCAAGAAATAGCCGA 58.566 43.478 0.00 0.00 35.47 5.54
143 144 3.001736 GCAGTCTAAGCAAGAAATAGCCG 59.998 47.826 0.00 0.00 35.47 5.52
144 145 4.034975 CAGCAGTCTAAGCAAGAAATAGCC 59.965 45.833 0.00 0.00 35.47 3.93
145 146 4.633565 ACAGCAGTCTAAGCAAGAAATAGC 59.366 41.667 0.00 0.00 35.47 2.97
146 147 5.641209 ACACAGCAGTCTAAGCAAGAAATAG 59.359 40.000 0.00 0.00 35.47 1.73
147 148 5.409520 CACACAGCAGTCTAAGCAAGAAATA 59.590 40.000 0.00 0.00 35.47 1.40
148 149 4.214971 CACACAGCAGTCTAAGCAAGAAAT 59.785 41.667 0.00 0.00 35.47 2.17
149 150 3.561310 CACACAGCAGTCTAAGCAAGAAA 59.439 43.478 0.00 0.00 35.47 2.52
150 151 3.133691 CACACAGCAGTCTAAGCAAGAA 58.866 45.455 0.00 0.00 35.47 2.52
151 152 2.548707 CCACACAGCAGTCTAAGCAAGA 60.549 50.000 0.00 0.00 0.00 3.02
152 153 1.802960 CCACACAGCAGTCTAAGCAAG 59.197 52.381 0.00 0.00 0.00 4.01
153 154 1.140852 ACCACACAGCAGTCTAAGCAA 59.859 47.619 0.00 0.00 0.00 3.91
154 155 0.758734 ACCACACAGCAGTCTAAGCA 59.241 50.000 0.00 0.00 0.00 3.91
155 156 2.743636 TACCACACAGCAGTCTAAGC 57.256 50.000 0.00 0.00 0.00 3.09
156 157 2.932614 GCATACCACACAGCAGTCTAAG 59.067 50.000 0.00 0.00 0.00 2.18
157 158 2.567169 AGCATACCACACAGCAGTCTAA 59.433 45.455 0.00 0.00 0.00 2.10
158 159 2.179427 AGCATACCACACAGCAGTCTA 58.821 47.619 0.00 0.00 0.00 2.59
159 160 0.979665 AGCATACCACACAGCAGTCT 59.020 50.000 0.00 0.00 0.00 3.24
160 161 1.813513 AAGCATACCACACAGCAGTC 58.186 50.000 0.00 0.00 0.00 3.51
161 162 2.276732 AAAGCATACCACACAGCAGT 57.723 45.000 0.00 0.00 0.00 4.40
162 163 4.764679 TTAAAAGCATACCACACAGCAG 57.235 40.909 0.00 0.00 0.00 4.24
163 164 5.163509 TGTTTTAAAAGCATACCACACAGCA 60.164 36.000 0.00 0.00 0.00 4.41
164 165 5.285651 TGTTTTAAAAGCATACCACACAGC 58.714 37.500 0.00 0.00 0.00 4.40
165 166 5.402270 GCTGTTTTAAAAGCATACCACACAG 59.598 40.000 0.00 3.22 39.31 3.66
166 167 5.285651 GCTGTTTTAAAAGCATACCACACA 58.714 37.500 0.00 0.00 39.31 3.72
167 168 4.684242 GGCTGTTTTAAAAGCATACCACAC 59.316 41.667 12.68 0.00 41.36 3.82
168 169 4.342378 TGGCTGTTTTAAAAGCATACCACA 59.658 37.500 12.68 0.62 41.36 4.17
169 170 4.877282 TGGCTGTTTTAAAAGCATACCAC 58.123 39.130 12.68 0.00 41.36 4.16
170 171 5.736951 ATGGCTGTTTTAAAAGCATACCA 57.263 34.783 12.68 15.63 41.36 3.25
171 172 9.810545 TTATTATGGCTGTTTTAAAAGCATACC 57.189 29.630 12.68 11.99 41.36 2.73
175 176 9.988815 TCTTTTATTATGGCTGTTTTAAAAGCA 57.011 25.926 12.68 8.13 41.36 3.91
221 222 2.629051 GCCGAGTGTAAGCCAAGTATT 58.371 47.619 0.00 0.00 0.00 1.89
222 223 1.134491 GGCCGAGTGTAAGCCAAGTAT 60.134 52.381 0.00 0.00 46.34 2.12
223 224 0.248289 GGCCGAGTGTAAGCCAAGTA 59.752 55.000 0.00 0.00 46.34 2.24
224 225 1.003718 GGCCGAGTGTAAGCCAAGT 60.004 57.895 0.00 0.00 46.34 3.16
225 226 3.890674 GGCCGAGTGTAAGCCAAG 58.109 61.111 0.00 0.00 46.34 3.61
229 230 1.502190 GCAAAGGCCGAGTGTAAGC 59.498 57.895 0.00 0.00 0.00 3.09
230 231 1.787847 CGCAAAGGCCGAGTGTAAG 59.212 57.895 0.00 0.00 36.38 2.34
231 232 2.322081 GCGCAAAGGCCGAGTGTAA 61.322 57.895 0.30 0.00 36.38 2.41
232 233 2.740826 GCGCAAAGGCCGAGTGTA 60.741 61.111 0.30 0.00 36.38 2.90
249 250 4.114997 GACCCGTTGCGCCAATGG 62.115 66.667 18.38 18.38 46.70 3.16
250 251 2.597117 GATGACCCGTTGCGCCAATG 62.597 60.000 4.18 4.86 0.00 2.82
251 252 2.361104 ATGACCCGTTGCGCCAAT 60.361 55.556 4.18 0.00 0.00 3.16
252 253 2.173758 TAGATGACCCGTTGCGCCAA 62.174 55.000 4.18 0.00 0.00 4.52
253 254 2.572095 CTAGATGACCCGTTGCGCCA 62.572 60.000 4.18 0.00 0.00 5.69
254 255 1.883084 CTAGATGACCCGTTGCGCC 60.883 63.158 4.18 0.00 0.00 6.53
255 256 0.101759 TACTAGATGACCCGTTGCGC 59.898 55.000 0.00 0.00 0.00 6.09
256 257 2.795175 ATACTAGATGACCCGTTGCG 57.205 50.000 0.00 0.00 0.00 4.85
257 258 9.298774 GTTTATATATACTAGATGACCCGTTGC 57.701 37.037 0.00 0.00 0.00 4.17
287 288 4.838904 AAATGAGAACTAGTACCCCCAC 57.161 45.455 0.00 0.00 0.00 4.61
318 321 8.801299 TGCTTGTCTTAATTCAATAATTCCACA 58.199 29.630 0.00 0.00 36.67 4.17
377 381 1.203523 TCGCAAATGCCAATTGGTACC 59.796 47.619 25.19 4.43 37.91 3.34
384 388 2.357009 GACTCTGATCGCAAATGCCAAT 59.643 45.455 0.00 0.00 37.91 3.16
385 389 1.739466 GACTCTGATCGCAAATGCCAA 59.261 47.619 0.00 0.00 37.91 4.52
388 392 4.984785 TGTATAGACTCTGATCGCAAATGC 59.015 41.667 0.00 0.00 37.78 3.56
389 393 5.116225 CGTGTATAGACTCTGATCGCAAATG 59.884 44.000 0.00 0.00 0.00 2.32
393 397 3.002348 CACGTGTATAGACTCTGATCGCA 59.998 47.826 7.58 0.00 0.00 5.10
394 398 3.247886 TCACGTGTATAGACTCTGATCGC 59.752 47.826 16.51 0.00 0.00 4.58
396 400 8.090250 ACTAATCACGTGTATAGACTCTGATC 57.910 38.462 26.01 0.00 0.00 2.92
397 401 8.346300 CAACTAATCACGTGTATAGACTCTGAT 58.654 37.037 26.01 5.11 0.00 2.90
399 403 7.473366 ACAACTAATCACGTGTATAGACTCTG 58.527 38.462 26.01 19.89 0.00 3.35
400 404 7.627298 ACAACTAATCACGTGTATAGACTCT 57.373 36.000 26.01 9.83 0.00 3.24
401 405 7.854916 GGTACAACTAATCACGTGTATAGACTC 59.145 40.741 26.01 15.31 0.00 3.36
404 408 7.628769 TGGTACAACTAATCACGTGTATAGA 57.371 36.000 26.01 6.83 31.92 1.98
540 549 2.038387 TATCCGCTTTTTCCCTCAGC 57.962 50.000 0.00 0.00 0.00 4.26
542 551 8.934023 ATATATTTTATCCGCTTTTTCCCTCA 57.066 30.769 0.00 0.00 0.00 3.86
568 577 7.645058 TCAAAGAAACTTGTCTTCCATTCTT 57.355 32.000 0.00 0.00 36.84 2.52
623 641 4.262463 GGAGTTATGTCCTCACACACTCAA 60.262 45.833 14.12 0.00 42.88 3.02
624 642 3.258372 GGAGTTATGTCCTCACACACTCA 59.742 47.826 14.12 0.00 42.88 3.41
933 953 1.627329 TGCTTTCTGAGGATGAGCTGT 59.373 47.619 0.00 0.00 34.34 4.40
934 954 2.008329 GTGCTTTCTGAGGATGAGCTG 58.992 52.381 0.00 0.00 34.34 4.24
935 955 1.907936 AGTGCTTTCTGAGGATGAGCT 59.092 47.619 0.00 0.00 34.34 4.09
936 956 2.399916 AGTGCTTTCTGAGGATGAGC 57.600 50.000 0.00 0.00 34.04 4.26
980 1000 2.677875 TCGCTCTCTGCAGCTGGA 60.678 61.111 17.12 12.70 43.06 3.86
989 1009 1.000993 AGGTCCATGGTCGCTCTCT 59.999 57.895 12.58 0.00 0.00 3.10
1306 1335 5.299279 TGAACAAGTTTCCCATCTTCTTCAC 59.701 40.000 0.00 0.00 28.95 3.18
1364 1393 2.939103 CGGACCTTGATGTCTTTGATCC 59.061 50.000 0.00 0.00 35.54 3.36
1451 1486 3.470709 CGAGGGTCAATAGTGATTGCAT 58.529 45.455 0.00 0.00 42.01 3.96
1462 1497 0.325296 TCCACTAGGCGAGGGTCAAT 60.325 55.000 0.00 0.00 33.74 2.57
1477 1512 2.832129 TCTGGTCCTTGTACAGATCCAC 59.168 50.000 0.00 0.00 36.41 4.02
1713 1748 4.032331 CGTTGTCGGCATTTGTTTCTTTTT 59.968 37.500 0.00 0.00 0.00 1.94
1878 1913 1.755395 CCTCATCGTGTACCGGGGA 60.755 63.158 6.32 0.00 37.11 4.81
1927 1962 2.829384 GGTGCCACCTGACCTTCCA 61.829 63.158 6.63 0.00 34.73 3.53
2330 2368 1.379176 CAGTGAGGAGGAGGAGCGA 60.379 63.158 0.00 0.00 0.00 4.93
2333 2371 3.074999 GCGCAGTGAGGAGGAGGAG 62.075 68.421 0.30 0.00 0.00 3.69
2334 2372 3.071206 GCGCAGTGAGGAGGAGGA 61.071 66.667 0.30 0.00 0.00 3.71
2335 2373 4.154347 GGCGCAGTGAGGAGGAGG 62.154 72.222 10.83 0.00 0.00 4.30
3130 3310 4.640771 TCTTGATCCCATTGGTATAGCC 57.359 45.455 1.20 0.00 37.90 3.93
3131 3311 6.951971 AGTATCTTGATCCCATTGGTATAGC 58.048 40.000 1.20 0.00 0.00 2.97
3150 3330 6.994221 TCCCAATCCGAAAATAGAGAGTATC 58.006 40.000 0.00 0.00 0.00 2.24
3151 3331 6.014156 CCTCCCAATCCGAAAATAGAGAGTAT 60.014 42.308 0.00 0.00 0.00 2.12
3152 3332 5.304614 CCTCCCAATCCGAAAATAGAGAGTA 59.695 44.000 0.00 0.00 0.00 2.59
3153 3333 4.101741 CCTCCCAATCCGAAAATAGAGAGT 59.898 45.833 0.00 0.00 0.00 3.24
3154 3334 4.636249 CCTCCCAATCCGAAAATAGAGAG 58.364 47.826 0.00 0.00 0.00 3.20
3155 3335 3.181454 GCCTCCCAATCCGAAAATAGAGA 60.181 47.826 0.00 0.00 0.00 3.10
3156 3336 3.142174 GCCTCCCAATCCGAAAATAGAG 58.858 50.000 0.00 0.00 0.00 2.43
3157 3337 2.158667 GGCCTCCCAATCCGAAAATAGA 60.159 50.000 0.00 0.00 0.00 1.98
3158 3338 2.158608 AGGCCTCCCAATCCGAAAATAG 60.159 50.000 0.00 0.00 0.00 1.73
3159 3339 1.850345 AGGCCTCCCAATCCGAAAATA 59.150 47.619 0.00 0.00 0.00 1.40
3160 3340 0.631212 AGGCCTCCCAATCCGAAAAT 59.369 50.000 0.00 0.00 0.00 1.82
3161 3341 0.407918 AAGGCCTCCCAATCCGAAAA 59.592 50.000 5.23 0.00 0.00 2.29
3162 3342 0.323360 CAAGGCCTCCCAATCCGAAA 60.323 55.000 5.23 0.00 0.00 3.46
3163 3343 1.302949 CAAGGCCTCCCAATCCGAA 59.697 57.895 5.23 0.00 0.00 4.30
3171 3351 2.361737 GTCTTGCCAAGGCCTCCC 60.362 66.667 5.23 0.00 41.09 4.30
3224 3404 1.985473 AGCACTGCAATCAAACTCCA 58.015 45.000 3.30 0.00 0.00 3.86
3267 3447 6.017605 TGTCATTGAGAAGTTTCTTCAAGCTC 60.018 38.462 11.27 0.00 37.73 4.09
3453 3635 9.899661 AAACTATATAATAAGGTGTGTTCAGCA 57.100 29.630 0.00 0.00 43.57 4.41
3492 3717 7.639113 TTTTCCCCATTTACTACTTAGCATG 57.361 36.000 0.00 0.00 0.00 4.06
3495 3720 8.350722 GCTATTTTTCCCCATTTACTACTTAGC 58.649 37.037 0.00 0.00 0.00 3.09
3496 3721 9.403583 TGCTATTTTTCCCCATTTACTACTTAG 57.596 33.333 0.00 0.00 0.00 2.18
3548 3781 9.559732 TGTCTCAAAAAGAATTCTTCACTCATA 57.440 29.630 20.71 2.59 35.21 2.15
3558 3791 9.483062 CGATGTAAGATGTCTCAAAAAGAATTC 57.517 33.333 0.00 0.00 35.21 2.17
3583 3822 0.466189 ATAGGCCATGCAAACCCTCG 60.466 55.000 5.01 0.00 0.00 4.63
3700 3960 6.372659 AGAATATATGAATGTGGGCGAACATC 59.627 38.462 5.08 1.38 39.89 3.06
3769 4037 9.554053 TTTCCCCATCTAAAAAGATAAATCCAA 57.446 29.630 0.00 0.00 0.00 3.53
3822 4091 6.172630 TCAGAGTTTGATTCCATTTCATCGA 58.827 36.000 0.00 0.00 0.00 3.59
3848 4117 1.542915 GAGACATGCATGCAACACCTT 59.457 47.619 26.68 3.45 0.00 3.50
3849 4118 1.171308 GAGACATGCATGCAACACCT 58.829 50.000 26.68 18.38 0.00 4.00
3850 4119 1.131883 GAGAGACATGCATGCAACACC 59.868 52.381 26.68 13.92 0.00 4.16
3851 4120 2.082231 AGAGAGACATGCATGCAACAC 58.918 47.619 26.68 17.59 0.00 3.32
3852 4121 2.353323 GAGAGAGACATGCATGCAACA 58.647 47.619 26.68 0.33 0.00 3.33
3853 4122 1.669779 GGAGAGAGACATGCATGCAAC 59.330 52.381 26.68 18.30 0.00 4.17
3860 4129 1.410882 GGGTGTAGGAGAGAGACATGC 59.589 57.143 0.00 0.00 0.00 4.06
3915 4184 2.447959 AGGCCGGGGGTATTCCTC 60.448 66.667 2.18 0.00 35.33 3.71
3916 4185 2.447959 GAGGCCGGGGGTATTCCT 60.448 66.667 2.18 0.00 35.33 3.36
3917 4186 2.447959 AGAGGCCGGGGGTATTCC 60.448 66.667 2.18 0.00 0.00 3.01
3918 4187 2.829592 CAGAGGCCGGGGGTATTC 59.170 66.667 2.18 0.00 0.00 1.75
3919 4188 3.489513 GCAGAGGCCGGGGGTATT 61.490 66.667 2.18 0.00 0.00 1.89
3920 4189 4.815973 TGCAGAGGCCGGGGGTAT 62.816 66.667 2.18 0.00 40.13 2.73
3921 4190 4.815973 ATGCAGAGGCCGGGGGTA 62.816 66.667 2.18 0.00 40.13 3.69
3923 4192 4.883354 GAATGCAGAGGCCGGGGG 62.883 72.222 2.18 0.00 40.13 5.40
3924 4193 4.883354 GGAATGCAGAGGCCGGGG 62.883 72.222 2.18 0.00 40.13 5.73
3925 4194 1.983119 TAAGGAATGCAGAGGCCGGG 61.983 60.000 2.18 0.00 40.13 5.73
3926 4195 0.109342 ATAAGGAATGCAGAGGCCGG 59.891 55.000 0.00 0.00 40.13 6.13
3927 4196 1.876156 GAATAAGGAATGCAGAGGCCG 59.124 52.381 0.00 0.00 40.13 6.13
3928 4197 2.883386 CTGAATAAGGAATGCAGAGGCC 59.117 50.000 0.00 0.00 43.34 5.19
3929 4198 3.549794 ACTGAATAAGGAATGCAGAGGC 58.450 45.455 0.00 0.00 43.34 4.70
3939 4208 9.958180 TCTTGAATTGACATTACTGAATAAGGA 57.042 29.630 0.00 0.00 0.00 3.36
3945 4214 9.897744 GTTGAATCTTGAATTGACATTACTGAA 57.102 29.630 0.00 0.00 0.00 3.02
3946 4215 9.065798 TGTTGAATCTTGAATTGACATTACTGA 57.934 29.630 0.00 0.00 0.00 3.41
3947 4216 9.681692 TTGTTGAATCTTGAATTGACATTACTG 57.318 29.630 0.00 0.00 0.00 2.74
3948 4217 9.903682 CTTGTTGAATCTTGAATTGACATTACT 57.096 29.630 0.00 0.00 0.00 2.24
3955 4225 5.047802 GCCTCCTTGTTGAATCTTGAATTGA 60.048 40.000 0.00 0.00 0.00 2.57
4069 4343 2.017049 GTACCTGTCATTGGCATCCAC 58.983 52.381 0.00 0.00 30.78 4.02
4160 4437 1.741401 TGATTGTCCTGCTTCCGCG 60.741 57.895 0.00 0.00 39.65 6.46
4194 4471 1.574428 GCGATTGTGGCAACTTCGT 59.426 52.632 15.47 0.00 36.01 3.85
4210 4487 2.893637 AGCTTGTATACTTCACTGGCG 58.106 47.619 4.17 0.00 0.00 5.69
4258 4535 9.842775 AGCACAAGATAATCTTCTATGAAATCA 57.157 29.630 0.00 0.00 33.78 2.57
4288 4569 7.719633 TGTTGGAAGATTATTAGGCCATTCTAC 59.280 37.037 5.01 0.00 0.00 2.59
4303 4584 7.437713 TGTCATATACCTCTGTTGGAAGATT 57.562 36.000 0.00 0.00 0.00 2.40
4326 4607 9.050601 ACACCACCACATTTATGTAAAATTTTG 57.949 29.630 13.76 0.00 39.39 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.