Multiple sequence alignment - TraesCS7A01G006300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G006300 chr7A 100.000 5778 0 0 1 5778 3006780 3012557 0.000000e+00 10671.0
1 TraesCS7A01G006300 chr7A 96.092 2047 72 5 2444 4489 3630146 3628107 0.000000e+00 3330.0
2 TraesCS7A01G006300 chr7A 87.220 2144 238 26 2385 4506 3323404 3321275 0.000000e+00 2409.0
3 TraesCS7A01G006300 chr7A 89.609 1203 109 8 2385 3579 3573284 3572090 0.000000e+00 1515.0
4 TraesCS7A01G006300 chr7A 88.173 1040 94 15 2345 3377 2578863 2579880 0.000000e+00 1212.0
5 TraesCS7A01G006300 chr7A 84.170 1295 143 29 3441 4722 2579872 2581117 0.000000e+00 1199.0
6 TraesCS7A01G006300 chr7A 87.978 890 93 8 3062 3942 2861675 2862559 0.000000e+00 1038.0
7 TraesCS7A01G006300 chr7A 84.455 862 123 9 3629 4486 3572109 3571255 0.000000e+00 839.0
8 TraesCS7A01G006300 chr7A 83.621 580 75 13 1704 2268 3573918 3573344 1.430000e-145 527.0
9 TraesCS7A01G006300 chr7A 82.234 591 81 15 1700 2268 3324079 3323491 6.730000e-134 488.0
10 TraesCS7A01G006300 chr7A 95.890 219 9 0 5495 5713 2667239 2667457 7.120000e-94 355.0
11 TraesCS7A01G006300 chr7A 95.349 215 8 2 5495 5708 2584388 2584601 1.990000e-89 340.0
12 TraesCS7A01G006300 chr7A 84.638 345 39 7 1668 2007 2571203 2571538 1.200000e-86 331.0
13 TraesCS7A01G006300 chr7A 87.248 298 21 4 5202 5482 2666555 2666852 2.010000e-84 324.0
14 TraesCS7A01G006300 chr7A 84.615 338 32 6 5164 5482 2583695 2584031 9.340000e-83 318.0
15 TraesCS7A01G006300 chr7A 80.866 439 51 12 5068 5479 1991830 1991398 1.210000e-81 315.0
16 TraesCS7A01G006300 chr7A 83.792 327 42 8 1668 1988 2860522 2860843 3.380000e-77 300.0
17 TraesCS7A01G006300 chr7A 89.048 210 18 3 5068 5277 2864569 2864773 7.430000e-64 255.0
18 TraesCS7A01G006300 chr7A 85.156 128 13 5 4950 5072 279160481 279160355 6.080000e-25 126.0
19 TraesCS7A01G006300 chr7A 85.000 100 14 1 5609 5708 3593352 3593450 3.680000e-17 100.0
20 TraesCS7A01G006300 chr4A 87.638 2168 230 20 2344 4489 739818239 739816088 0.000000e+00 2484.0
21 TraesCS7A01G006300 chr4A 82.843 2209 317 40 2372 4546 740891515 740893695 0.000000e+00 1923.0
22 TraesCS7A01G006300 chr4A 89.197 1333 104 20 2344 3673 742275204 742276499 0.000000e+00 1628.0
23 TraesCS7A01G006300 chr4A 83.249 1773 263 22 2344 4105 733960856 733962605 0.000000e+00 1598.0
24 TraesCS7A01G006300 chr4A 88.131 1129 99 17 1090 2211 740590508 740589408 0.000000e+00 1310.0
25 TraesCS7A01G006300 chr4A 80.769 1222 164 29 1073 2268 741971352 741972528 0.000000e+00 889.0
26 TraesCS7A01G006300 chr4A 85.731 834 93 13 3666 4489 742276787 742277604 0.000000e+00 857.0
27 TraesCS7A01G006300 chr4A 88.352 704 65 8 2288 2984 741471878 741471185 0.000000e+00 830.0
28 TraesCS7A01G006300 chr4A 89.831 590 43 8 1673 2256 741472458 741471880 0.000000e+00 741.0
29 TraesCS7A01G006300 chr4A 77.845 1318 198 49 3441 4722 740588167 740586908 0.000000e+00 730.0
30 TraesCS7A01G006300 chr4A 81.363 939 110 36 1053 1962 740065711 740066613 0.000000e+00 704.0
31 TraesCS7A01G006300 chr4A 91.807 415 14 10 82 477 739803645 739803232 1.410000e-155 560.0
32 TraesCS7A01G006300 chr4A 88.937 461 37 9 519 966 739803248 739802789 1.820000e-154 556.0
33 TraesCS7A01G006300 chr4A 82.248 614 94 11 1053 1652 739828867 739828255 3.090000e-142 516.0
34 TraesCS7A01G006300 chr4A 86.422 464 49 9 519 970 740872482 740872943 4.020000e-136 496.0
35 TraesCS7A01G006300 chr4A 81.107 614 87 18 1054 1652 733931355 733931954 1.130000e-126 464.0
36 TraesCS7A01G006300 chr4A 80.467 599 83 19 1701 2269 742274595 742275189 1.490000e-115 427.0
37 TraesCS7A01G006300 chr4A 81.465 437 50 11 5068 5479 741479605 741479175 4.320000e-86 329.0
38 TraesCS7A01G006300 chr4A 89.370 254 3 5 243 477 740872250 740872498 1.220000e-76 298.0
39 TraesCS7A01G006300 chr4A 88.745 231 24 2 1 231 740872051 740872279 1.230000e-71 281.0
40 TraesCS7A01G006300 chr4A 89.340 197 21 0 1031 1227 741801807 741802003 1.240000e-61 248.0
41 TraesCS7A01G006300 chr4A 86.957 207 20 7 2058 2263 733960635 733960835 5.830000e-55 226.0
42 TraesCS7A01G006300 chr4A 85.915 213 28 1 2052 2262 740891250 740891462 5.830000e-55 226.0
43 TraesCS7A01G006300 chr4A 85.227 88 5 1 4854 4933 741469349 741469262 3.710000e-12 84.2
44 TraesCS7A01G006300 chr4A 97.826 46 0 1 475 519 742641551 742641596 1.730000e-10 78.7
45 TraesCS7A01G006300 chr7D 85.762 2381 265 38 2361 4722 3754624 3756949 0.000000e+00 2451.0
46 TraesCS7A01G006300 chr7D 84.906 1431 172 18 2980 4400 3769842 3768446 0.000000e+00 1406.0
47 TraesCS7A01G006300 chr7D 80.924 1190 193 28 3488 4657 3431311 3430136 0.000000e+00 909.0
48 TraesCS7A01G006300 chr7D 91.637 562 44 1 2427 2988 3778441 3777883 0.000000e+00 774.0
49 TraesCS7A01G006300 chr7D 82.065 959 114 19 1073 2007 3740561 3741485 0.000000e+00 765.0
50 TraesCS7A01G006300 chr7D 89.137 626 47 11 1047 1651 3435100 3434475 0.000000e+00 760.0
51 TraesCS7A01G006300 chr7D 87.164 483 45 10 518 989 3435578 3435102 3.070000e-147 532.0
52 TraesCS7A01G006300 chr7D 86.248 509 16 14 1 477 3436047 3435561 2.400000e-138 503.0
53 TraesCS7A01G006300 chr7D 83.220 441 41 16 5068 5482 3623127 3622694 1.970000e-99 374.0
54 TraesCS7A01G006300 chr7D 81.007 437 51 16 5068 5479 2353052 2352623 9.340000e-83 318.0
55 TraesCS7A01G006300 chr7D 81.007 437 51 16 5068 5479 3782327 3781898 9.340000e-83 318.0
56 TraesCS7A01G006300 chr7D 86.100 259 32 4 5068 5323 3426409 3426152 5.700000e-70 276.0
57 TraesCS7A01G006300 chr7D 78.982 452 41 20 5068 5476 3576647 3576207 5.740000e-65 259.0
58 TraesCS7A01G006300 chr7D 86.449 214 27 2 2057 2268 3432885 3432672 3.480000e-57 233.0
59 TraesCS7A01G006300 chr7D 84.932 219 31 1 2052 2268 3754352 3754570 2.710000e-53 220.0
60 TraesCS7A01G006300 chr7D 91.837 49 3 1 477 525 29290792 29290839 3.740000e-07 67.6
61 TraesCS7A01G006300 chrUn 78.361 952 170 20 3626 4568 23782222 23783146 8.340000e-163 584.0
62 TraesCS7A01G006300 chrUn 78.361 952 170 20 3626 4568 291096679 291097603 8.340000e-163 584.0
63 TraesCS7A01G006300 chrUn 79.712 626 93 21 1668 2267 23780534 23781151 6.920000e-114 422.0
64 TraesCS7A01G006300 chrUn 79.712 626 93 21 1668 2267 291094991 291095608 6.920000e-114 422.0
65 TraesCS7A01G006300 chrUn 87.500 128 12 4 4950 5075 156736081 156735956 1.680000e-30 145.0
66 TraesCS7A01G006300 chrUn 86.719 128 13 4 4950 5075 156682391 156682266 7.810000e-29 139.0
67 TraesCS7A01G006300 chrUn 86.047 129 14 3 4950 5075 110264334 110264461 1.010000e-27 135.0
68 TraesCS7A01G006300 chrUn 86.047 129 14 3 4950 5075 156617772 156617645 1.010000e-27 135.0
69 TraesCS7A01G006300 chrUn 86.047 129 14 3 4950 5075 371509653 371509780 1.010000e-27 135.0
70 TraesCS7A01G006300 chrUn 86.179 123 12 4 4950 5068 45464133 45464012 1.690000e-25 128.0
71 TraesCS7A01G006300 chr7B 88.034 117 11 2 4950 5063 664844407 664844523 1.010000e-27 135.0
72 TraesCS7A01G006300 chr5A 83.721 129 17 4 4950 5075 699534059 699534186 1.020000e-22 119.0
73 TraesCS7A01G006300 chr3D 97.826 46 1 0 474 519 612287668 612287713 4.800000e-11 80.5
74 TraesCS7A01G006300 chr3D 93.878 49 1 2 472 519 127334723 127334676 8.030000e-09 73.1
75 TraesCS7A01G006300 chr1A 95.833 48 1 1 473 519 564394475 564394522 6.210000e-10 76.8
76 TraesCS7A01G006300 chr6A 97.674 43 1 0 477 519 613661492 613661534 2.230000e-09 75.0
77 TraesCS7A01G006300 chr6B 95.455 44 2 0 476 519 214023841 214023884 2.890000e-08 71.3
78 TraesCS7A01G006300 chr2D 95.349 43 2 0 477 519 17808524 17808566 1.040000e-07 69.4
79 TraesCS7A01G006300 chr5B 95.349 43 1 1 476 518 395739635 395739594 3.740000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G006300 chr7A 3006780 3012557 5777 False 10671.000000 10671 100.000000 1 5778 1 chr7A.!!$F2 5777
1 TraesCS7A01G006300 chr7A 3628107 3630146 2039 True 3330.000000 3330 96.092000 2444 4489 1 chr7A.!!$R2 2045
2 TraesCS7A01G006300 chr7A 3321275 3324079 2804 True 1448.500000 2409 84.727000 1700 4506 2 chr7A.!!$R4 2806
3 TraesCS7A01G006300 chr7A 3571255 3573918 2663 True 960.333333 1515 85.895000 1704 4486 3 chr7A.!!$R5 2782
4 TraesCS7A01G006300 chr7A 2578863 2584601 5738 False 767.250000 1212 88.076750 2345 5708 4 chr7A.!!$F4 3363
5 TraesCS7A01G006300 chr7A 2860522 2864773 4251 False 531.000000 1038 86.939333 1668 5277 3 chr7A.!!$F6 3609
6 TraesCS7A01G006300 chr7A 2666555 2667457 902 False 339.500000 355 91.569000 5202 5713 2 chr7A.!!$F5 511
7 TraesCS7A01G006300 chr4A 739816088 739818239 2151 True 2484.000000 2484 87.638000 2344 4489 1 chr4A.!!$R1 2145
8 TraesCS7A01G006300 chr4A 740891250 740893695 2445 False 1074.500000 1923 84.379000 2052 4546 2 chr4A.!!$F8 2494
9 TraesCS7A01G006300 chr4A 740586908 740590508 3600 True 1020.000000 1310 82.988000 1090 4722 2 chr4A.!!$R5 3632
10 TraesCS7A01G006300 chr4A 742274595 742277604 3009 False 970.666667 1628 85.131667 1701 4489 3 chr4A.!!$F9 2788
11 TraesCS7A01G006300 chr4A 733960635 733962605 1970 False 912.000000 1598 85.103000 2058 4105 2 chr4A.!!$F6 2047
12 TraesCS7A01G006300 chr4A 741971352 741972528 1176 False 889.000000 889 80.769000 1073 2268 1 chr4A.!!$F4 1195
13 TraesCS7A01G006300 chr4A 740065711 740066613 902 False 704.000000 704 81.363000 1053 1962 1 chr4A.!!$F2 909
14 TraesCS7A01G006300 chr4A 739802789 739803645 856 True 558.000000 560 90.372000 82 966 2 chr4A.!!$R4 884
15 TraesCS7A01G006300 chr4A 741469262 741472458 3196 True 551.733333 830 87.803333 1673 4933 3 chr4A.!!$R6 3260
16 TraesCS7A01G006300 chr4A 739828255 739828867 612 True 516.000000 516 82.248000 1053 1652 1 chr4A.!!$R2 599
17 TraesCS7A01G006300 chr4A 733931355 733931954 599 False 464.000000 464 81.107000 1054 1652 1 chr4A.!!$F1 598
18 TraesCS7A01G006300 chr4A 740872051 740872943 892 False 358.333333 496 88.179000 1 970 3 chr4A.!!$F7 969
19 TraesCS7A01G006300 chr7D 3768446 3769842 1396 True 1406.000000 1406 84.906000 2980 4400 1 chr7D.!!$R4 1420
20 TraesCS7A01G006300 chr7D 3754352 3756949 2597 False 1335.500000 2451 85.347000 2052 4722 2 chr7D.!!$F3 2670
21 TraesCS7A01G006300 chr7D 3740561 3741485 924 False 765.000000 765 82.065000 1073 2007 1 chr7D.!!$F1 934
22 TraesCS7A01G006300 chr7D 3777883 3782327 4444 True 546.000000 774 86.322000 2427 5479 2 chr7D.!!$R6 3052
23 TraesCS7A01G006300 chr7D 3426152 3436047 9895 True 535.500000 909 86.003667 1 5323 6 chr7D.!!$R5 5322
24 TraesCS7A01G006300 chrUn 23780534 23783146 2612 False 503.000000 584 79.036500 1668 4568 2 chrUn.!!$F3 2900
25 TraesCS7A01G006300 chrUn 291094991 291097603 2612 False 503.000000 584 79.036500 1668 4568 2 chrUn.!!$F4 2900

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
985 1038 0.451383 ATGCACACACACACACACAC 59.549 50.0 0.00 0.00 0.00 3.82 F
1223 1280 0.508641 CTCGCAAGGACGTCAAGTTG 59.491 55.0 18.91 17.27 38.47 3.16 F
1773 1975 0.614415 TGCCAGCCTTGTTTATGGGG 60.614 55.0 0.00 0.00 33.23 4.96 F
3433 6356 1.439543 GGAGATAGGGGGTCTGCAAT 58.560 55.0 0.00 0.00 34.58 3.56 F
4675 8106 0.634465 GGAAGAGGAGGAGGAGGAGT 59.366 60.0 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2376 4364 0.835941 CAGGCTTCATCCTAGTGGCT 59.164 55.0 0.00 0.0 33.95 4.75 R
3168 5680 0.034477 TTCCAAGGGCCTCGAAATCC 60.034 55.0 6.46 0.0 0.00 3.01 R
3668 6961 0.394192 CTGTGTGAGCCCTCTGTTGA 59.606 55.0 0.00 0.0 0.00 3.18 R
4740 8177 0.034337 TTACGAGTGGGAAGCCACAC 59.966 55.0 0.00 0.0 42.56 3.82 R
5493 13993 0.033504 GACGGTCTTGCTCTGTGGAA 59.966 55.0 0.00 0.0 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 160 8.726870 AGCGTTATTATATTGGCCGTAATATT 57.273 30.769 12.26 0.00 35.47 1.28
468 492 4.899352 ATTCAAGCCACTGAGAGTAAGT 57.101 40.909 0.00 0.00 0.00 2.24
469 493 4.689612 TTCAAGCCACTGAGAGTAAGTT 57.310 40.909 0.00 0.00 0.00 2.66
470 494 5.801531 TTCAAGCCACTGAGAGTAAGTTA 57.198 39.130 0.00 0.00 0.00 2.24
471 495 5.392767 TCAAGCCACTGAGAGTAAGTTAG 57.607 43.478 0.00 0.00 0.00 2.34
473 497 4.792521 AGCCACTGAGAGTAAGTTAGTG 57.207 45.455 0.00 0.00 38.70 2.74
476 500 4.561734 GCCACTGAGAGTAAGTTAGTGCTT 60.562 45.833 0.00 0.00 37.89 3.91
477 501 5.336531 GCCACTGAGAGTAAGTTAGTGCTTA 60.337 44.000 0.00 0.00 37.89 3.09
478 502 6.094061 CCACTGAGAGTAAGTTAGTGCTTAC 58.906 44.000 7.64 7.64 46.66 2.34
486 510 6.404712 GTAAGTTAGTGCTTACCATGTGAC 57.595 41.667 5.04 0.00 42.84 3.67
487 511 4.617253 AGTTAGTGCTTACCATGTGACA 57.383 40.909 0.00 0.00 0.00 3.58
488 512 4.315803 AGTTAGTGCTTACCATGTGACAC 58.684 43.478 0.00 0.00 0.00 3.67
501 525 2.924421 TGTGACACATGTGGTAAGCAA 58.076 42.857 28.64 5.83 34.19 3.91
502 526 3.485394 TGTGACACATGTGGTAAGCAAT 58.515 40.909 28.64 5.90 34.19 3.56
504 528 3.081061 TGACACATGTGGTAAGCAATCC 58.919 45.455 28.64 6.08 34.19 3.01
505 529 3.081061 GACACATGTGGTAAGCAATCCA 58.919 45.455 28.64 0.00 34.19 3.41
506 530 3.495331 ACACATGTGGTAAGCAATCCAA 58.505 40.909 28.64 0.00 35.38 3.53
508 532 4.236935 CACATGTGGTAAGCAATCCAAAC 58.763 43.478 18.51 0.00 35.38 2.93
510 534 4.343526 ACATGTGGTAAGCAATCCAAACAA 59.656 37.500 0.00 0.00 35.38 2.83
511 535 5.011943 ACATGTGGTAAGCAATCCAAACAAT 59.988 36.000 0.00 0.00 35.38 2.71
512 536 5.543507 TGTGGTAAGCAATCCAAACAATT 57.456 34.783 0.00 0.00 35.38 2.32
513 537 5.537188 TGTGGTAAGCAATCCAAACAATTC 58.463 37.500 0.00 0.00 35.38 2.17
514 538 5.069648 TGTGGTAAGCAATCCAAACAATTCA 59.930 36.000 0.00 0.00 35.38 2.57
515 539 5.988561 GTGGTAAGCAATCCAAACAATTCAA 59.011 36.000 0.00 0.00 35.38 2.69
516 540 6.481644 GTGGTAAGCAATCCAAACAATTCAAA 59.518 34.615 0.00 0.00 35.38 2.69
644 669 3.826729 GGACACAAGAAATTAGGCAACCT 59.173 43.478 0.00 0.00 37.71 3.50
655 680 1.915141 AGGCAACCTTCCATGTCTTG 58.085 50.000 0.00 0.00 37.17 3.02
665 690 2.665165 TCCATGTCTTGTGGCTTTTGT 58.335 42.857 0.00 0.00 36.66 2.83
667 692 3.125316 CCATGTCTTGTGGCTTTTGTTG 58.875 45.455 0.00 0.00 0.00 3.33
674 699 2.966050 TGTGGCTTTTGTTGGTTTGTC 58.034 42.857 0.00 0.00 0.00 3.18
829 875 3.243569 TGGTTGTAATCAAAGCCGGTTTG 60.244 43.478 15.48 15.48 46.17 2.93
871 921 7.174253 TCCTTGTTGCGTTAAGTTAATCTCATT 59.826 33.333 0.00 0.00 0.00 2.57
909 959 0.678048 AGAAGCGACCATTTGGAGGC 60.678 55.000 3.01 6.11 38.94 4.70
914 964 1.303317 GACCATTTGGAGGCCGTGT 60.303 57.895 3.01 0.00 38.94 4.49
920 973 2.386064 TTTGGAGGCCGTGTACGCTT 62.386 55.000 4.67 0.00 38.18 4.68
985 1038 0.451383 ATGCACACACACACACACAC 59.549 50.000 0.00 0.00 0.00 3.82
989 1042 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
990 1043 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
993 1046 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
994 1047 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
995 1048 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
997 1050 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
998 1051 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1001 1054 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1002 1055 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1004 1057 2.675348 CACACACACACACACACACATA 59.325 45.455 0.00 0.00 0.00 2.29
1005 1058 2.675844 ACACACACACACACACACATAC 59.324 45.455 0.00 0.00 0.00 2.39
1007 1060 2.675844 ACACACACACACACACATACAC 59.324 45.455 0.00 0.00 0.00 2.90
1009 1062 2.675844 ACACACACACACACATACACAC 59.324 45.455 0.00 0.00 0.00 3.82
1010 1063 2.675348 CACACACACACACATACACACA 59.325 45.455 0.00 0.00 0.00 3.72
1011 1064 2.675844 ACACACACACACATACACACAC 59.324 45.455 0.00 0.00 0.00 3.82
1012 1065 2.675348 CACACACACACATACACACACA 59.325 45.455 0.00 0.00 0.00 3.72
1013 1066 2.935849 ACACACACACATACACACACAG 59.064 45.455 0.00 0.00 0.00 3.66
1014 1067 3.194062 CACACACACATACACACACAGA 58.806 45.455 0.00 0.00 0.00 3.41
1017 1070 3.737774 CACACACATACACACACAGAGAG 59.262 47.826 0.00 0.00 0.00 3.20
1019 1072 4.233005 CACACATACACACACAGAGAGAG 58.767 47.826 0.00 0.00 0.00 3.20
1020 1073 3.256879 ACACATACACACACAGAGAGAGG 59.743 47.826 0.00 0.00 0.00 3.69
1021 1074 2.232452 ACATACACACACAGAGAGAGGC 59.768 50.000 0.00 0.00 0.00 4.70
1023 1076 0.678395 ACACACACAGAGAGAGGCAG 59.322 55.000 0.00 0.00 0.00 4.85
1024 1077 0.964700 CACACACAGAGAGAGGCAGA 59.035 55.000 0.00 0.00 0.00 4.26
1025 1078 1.067706 CACACACAGAGAGAGGCAGAG 60.068 57.143 0.00 0.00 0.00 3.35
1027 1080 1.473677 CACACAGAGAGAGGCAGAGAG 59.526 57.143 0.00 0.00 0.00 3.20
1029 1082 2.019249 CACAGAGAGAGGCAGAGAGAG 58.981 57.143 0.00 0.00 0.00 3.20
1031 1084 2.092753 ACAGAGAGAGGCAGAGAGAGAG 60.093 54.545 0.00 0.00 0.00 3.20
1034 1087 2.435805 GAGAGAGGCAGAGAGAGAGAGA 59.564 54.545 0.00 0.00 0.00 3.10
1035 1088 2.437281 AGAGAGGCAGAGAGAGAGAGAG 59.563 54.545 0.00 0.00 0.00 3.20
1036 1089 2.435805 GAGAGGCAGAGAGAGAGAGAGA 59.564 54.545 0.00 0.00 0.00 3.10
1037 1090 2.437281 AGAGGCAGAGAGAGAGAGAGAG 59.563 54.545 0.00 0.00 0.00 3.20
1038 1091 2.435805 GAGGCAGAGAGAGAGAGAGAGA 59.564 54.545 0.00 0.00 0.00 3.10
1040 1093 2.435805 GGCAGAGAGAGAGAGAGAGAGA 59.564 54.545 0.00 0.00 0.00 3.10
1041 1094 3.494048 GGCAGAGAGAGAGAGAGAGAGAG 60.494 56.522 0.00 0.00 0.00 3.20
1042 1095 3.133721 GCAGAGAGAGAGAGAGAGAGAGT 59.866 52.174 0.00 0.00 0.00 3.24
1043 1096 4.691175 CAGAGAGAGAGAGAGAGAGAGTG 58.309 52.174 0.00 0.00 0.00 3.51
1044 1097 4.403752 CAGAGAGAGAGAGAGAGAGAGTGA 59.596 50.000 0.00 0.00 0.00 3.41
1045 1098 5.070180 CAGAGAGAGAGAGAGAGAGAGTGAT 59.930 48.000 0.00 0.00 0.00 3.06
1067 1120 2.267961 GGGATGTTCTTCGGCGGT 59.732 61.111 7.21 0.00 0.00 5.68
1194 1251 0.895559 GGGCAGCCAGTACAAGCTTT 60.896 55.000 15.19 0.00 37.18 3.51
1223 1280 0.508641 CTCGCAAGGACGTCAAGTTG 59.491 55.000 18.91 17.27 38.47 3.16
1349 1406 1.662608 CGCTGATATGGAGGACGCT 59.337 57.895 0.00 0.00 0.00 5.07
1460 1520 4.478206 TTTCAGGGCAAGAGTAGATGAG 57.522 45.455 0.00 0.00 0.00 2.90
1624 1715 3.887716 GGAATGGACAGATGGAAGAATGG 59.112 47.826 0.00 0.00 0.00 3.16
1652 1752 5.403558 TCACATACCTGATAGGAGAAGGA 57.596 43.478 1.13 0.00 37.67 3.36
1654 1754 4.526262 CACATACCTGATAGGAGAAGGAGG 59.474 50.000 1.13 0.00 37.67 4.30
1657 1757 2.178984 ACCTGATAGGAGAAGGAGGAGG 59.821 54.545 1.13 0.00 37.67 4.30
1658 1758 2.448961 CCTGATAGGAGAAGGAGGAGGA 59.551 54.545 0.00 0.00 37.67 3.71
1659 1759 3.500289 CCTGATAGGAGAAGGAGGAGGAG 60.500 56.522 0.00 0.00 37.67 3.69
1660 1760 3.397618 CTGATAGGAGAAGGAGGAGGAGA 59.602 52.174 0.00 0.00 0.00 3.71
1661 1761 3.794399 TGATAGGAGAAGGAGGAGGAGAA 59.206 47.826 0.00 0.00 0.00 2.87
1662 1762 2.846665 AGGAGAAGGAGGAGGAGAAG 57.153 55.000 0.00 0.00 0.00 2.85
1663 1763 2.293246 AGGAGAAGGAGGAGGAGAAGA 58.707 52.381 0.00 0.00 0.00 2.87
1665 1765 2.021457 GAGAAGGAGGAGGAGAAGACG 58.979 57.143 0.00 0.00 0.00 4.18
1669 1769 1.636519 AGGAGGAGGAGAAGACGAAGA 59.363 52.381 0.00 0.00 0.00 2.87
1771 1973 1.205417 CCTTGCCAGCCTTGTTTATGG 59.795 52.381 0.00 0.00 35.84 2.74
1773 1975 0.614415 TGCCAGCCTTGTTTATGGGG 60.614 55.000 0.00 0.00 33.23 4.96
1881 2095 3.056250 TCTCAAGCAAGTAGGAGCTGAAG 60.056 47.826 0.00 0.00 41.70 3.02
1963 2181 6.449698 AGATGACAAAAGGTGTGCAAATTAG 58.550 36.000 0.00 0.00 41.96 1.73
2073 3539 7.321153 TGGTCAAGCTGTCTACTAATTAACTC 58.679 38.462 0.00 0.00 0.00 3.01
2154 3682 3.818180 AGAATGGGAGATCATCAGCAAC 58.182 45.455 0.00 0.00 0.00 4.17
2163 3691 3.522750 AGATCATCAGCAACTCTTTCCCT 59.477 43.478 0.00 0.00 0.00 4.20
2220 3984 1.933853 CGTATTGCTTCTGTACCAGGC 59.066 52.381 0.00 0.00 31.51 4.85
2231 3995 2.355756 CTGTACCAGGCGATCATTTTGG 59.644 50.000 0.00 0.00 35.07 3.28
2274 4038 8.284945 TCAGAATGAATCCTAAATGTTTCCTG 57.715 34.615 0.00 0.00 45.97 3.86
2276 4040 6.664816 AGAATGAATCCTAAATGTTTCCTGCA 59.335 34.615 0.00 0.00 0.00 4.41
2316 4268 2.196595 CCTAAATCTGGTCCCCTGTCA 58.803 52.381 0.00 0.00 0.00 3.58
2318 4270 2.887151 AAATCTGGTCCCCTGTCAAG 57.113 50.000 0.00 0.00 0.00 3.02
2320 4272 2.277008 ATCTGGTCCCCTGTCAAGAT 57.723 50.000 0.00 0.00 0.00 2.40
2321 4273 2.044793 TCTGGTCCCCTGTCAAGATT 57.955 50.000 0.00 0.00 0.00 2.40
2322 4274 3.199442 TCTGGTCCCCTGTCAAGATTA 57.801 47.619 0.00 0.00 0.00 1.75
2369 4357 2.011122 CTATACGGACCTGATGGGGT 57.989 55.000 0.00 0.00 43.07 4.95
2370 4358 1.618837 CTATACGGACCTGATGGGGTG 59.381 57.143 0.00 0.00 40.06 4.61
2376 4364 1.507140 GACCTGATGGGGTGGATGTA 58.493 55.000 0.00 0.00 40.06 2.29
2438 4930 2.573462 ACAGTGACCATCCTATTGTGCT 59.427 45.455 0.00 0.00 0.00 4.40
2599 5097 4.437682 AGTGGAATTCAGAACACTCCAA 57.562 40.909 7.93 0.00 39.84 3.53
2632 5130 3.492102 TGGTAGAGAGTTTGCAGCTTT 57.508 42.857 0.00 0.00 0.00 3.51
3158 5670 8.311836 TCTTAAATTCGTACAGTCTCTTTGGAT 58.688 33.333 0.00 0.00 0.00 3.41
3161 5673 8.649973 AAATTCGTACAGTCTCTTTGGATATC 57.350 34.615 0.00 0.00 0.00 1.63
3163 5675 6.378710 TCGTACAGTCTCTTTGGATATCTG 57.621 41.667 2.05 0.00 0.00 2.90
3166 5678 6.693545 CGTACAGTCTCTTTGGATATCTGTTC 59.306 42.308 2.05 0.00 36.36 3.18
3167 5679 6.865834 ACAGTCTCTTTGGATATCTGTTCT 57.134 37.500 2.05 0.00 31.95 3.01
3168 5680 6.638610 ACAGTCTCTTTGGATATCTGTTCTG 58.361 40.000 2.05 4.34 31.95 3.02
3271 5852 4.162320 GGACAGGAATCAGTGAGATACCAA 59.838 45.833 0.00 0.00 35.39 3.67
3433 6356 1.439543 GGAGATAGGGGGTCTGCAAT 58.560 55.000 0.00 0.00 34.58 3.56
3668 6961 2.695585 AGAGACCTTGGACCTGAGTTT 58.304 47.619 0.00 0.00 0.00 2.66
3748 7041 2.499289 CTGCTCTTGAGTGATACAGGGT 59.501 50.000 0.00 0.00 0.00 4.34
3757 7050 2.305927 AGTGATACAGGGTTGGTGAAGG 59.694 50.000 0.00 0.00 0.00 3.46
4412 7832 2.191375 CAGGAGCCCGTGCATGAT 59.809 61.111 7.72 0.00 41.13 2.45
4414 7834 2.592861 GGAGCCCGTGCATGATCC 60.593 66.667 7.72 8.18 41.13 3.36
4415 7835 2.507944 GAGCCCGTGCATGATCCT 59.492 61.111 7.72 0.00 41.13 3.24
4417 7837 2.037620 GAGCCCGTGCATGATCCTCT 62.038 60.000 7.72 0.00 41.13 3.69
4419 7839 0.749454 GCCCGTGCATGATCCTCTTT 60.749 55.000 7.72 0.00 37.47 2.52
4420 7840 1.755179 CCCGTGCATGATCCTCTTTT 58.245 50.000 7.72 0.00 0.00 2.27
4454 7874 0.998145 AAAGAAGCCCAGGAGCATCT 59.002 50.000 2.74 2.74 42.30 2.90
4532 7952 2.200337 GCTTGGCACGGGAGGTTTT 61.200 57.895 0.00 0.00 0.00 2.43
4583 8009 2.788233 CTGAGAATGAGATGAAGCGTCG 59.212 50.000 0.00 0.00 0.00 5.12
4675 8106 0.634465 GGAAGAGGAGGAGGAGGAGT 59.366 60.000 0.00 0.00 0.00 3.85
4722 8159 2.351738 CGTGATTGGGTTTCTTCCTTGC 60.352 50.000 0.00 0.00 0.00 4.01
4723 8160 2.893489 GTGATTGGGTTTCTTCCTTGCT 59.107 45.455 0.00 0.00 0.00 3.91
4725 8162 1.604604 TTGGGTTTCTTCCTTGCTCG 58.395 50.000 0.00 0.00 0.00 5.03
4728 8165 1.443802 GGTTTCTTCCTTGCTCGGAG 58.556 55.000 0.00 0.00 33.89 4.63
4731 8168 1.933021 TTCTTCCTTGCTCGGAGGTA 58.067 50.000 7.20 0.00 35.71 3.08
4733 8170 2.467880 TCTTCCTTGCTCGGAGGTAAT 58.532 47.619 7.20 0.00 35.71 1.89
4734 8171 2.431057 TCTTCCTTGCTCGGAGGTAATC 59.569 50.000 7.20 0.00 35.71 1.75
4735 8172 1.120530 TCCTTGCTCGGAGGTAATCC 58.879 55.000 7.20 0.00 45.64 3.01
4744 8181 2.295253 GGAGGTAATCCGTCTGTGTG 57.705 55.000 0.00 0.00 38.67 3.82
4745 8182 1.134788 GGAGGTAATCCGTCTGTGTGG 60.135 57.143 0.00 0.00 38.67 4.17
4769 8259 0.852777 CCACTCGTAATCAATCCGCG 59.147 55.000 0.00 0.00 0.00 6.46
4804 8314 3.485463 TTCTTTGACCAACAGACCGAT 57.515 42.857 0.00 0.00 0.00 4.18
4819 8477 4.150627 CAGACCGATCACTAACACACTTTG 59.849 45.833 0.00 0.00 0.00 2.77
4820 8478 4.056050 GACCGATCACTAACACACTTTGT 58.944 43.478 0.00 0.00 41.74 2.83
4849 8534 2.742053 GTCCGCAGTCTTAATTTGCAGA 59.258 45.455 0.43 0.00 37.69 4.26
4850 8535 3.002791 TCCGCAGTCTTAATTTGCAGAG 58.997 45.455 0.43 0.00 37.69 3.35
4865 8560 7.832503 ATTTGCAGAGTAATTGGTTATTTGC 57.167 32.000 0.00 0.00 0.00 3.68
4943 8655 3.181463 TGCTTGCTTCCTTGCTTCAAAAT 60.181 39.130 0.00 0.00 0.00 1.82
4947 8659 4.624015 TGCTTCCTTGCTTCAAAATCTTG 58.376 39.130 0.00 0.00 0.00 3.02
4948 8660 3.992427 GCTTCCTTGCTTCAAAATCTTGG 59.008 43.478 0.00 0.00 33.01 3.61
4956 8668 6.899393 TGCTTCAAAATCTTGGTTGTATCT 57.101 33.333 0.00 0.00 33.01 1.98
4957 8669 7.288810 TGCTTCAAAATCTTGGTTGTATCTT 57.711 32.000 0.00 0.00 33.01 2.40
4958 8670 7.147312 TGCTTCAAAATCTTGGTTGTATCTTG 58.853 34.615 0.00 0.00 33.01 3.02
4959 8671 7.147976 GCTTCAAAATCTTGGTTGTATCTTGT 58.852 34.615 0.00 0.00 33.01 3.16
4960 8672 7.327032 GCTTCAAAATCTTGGTTGTATCTTGTC 59.673 37.037 0.00 0.00 33.01 3.18
4961 8673 8.463930 TTCAAAATCTTGGTTGTATCTTGTCT 57.536 30.769 0.00 0.00 33.01 3.41
4962 8674 8.463930 TCAAAATCTTGGTTGTATCTTGTCTT 57.536 30.769 0.00 0.00 33.01 3.01
4963 8675 8.352201 TCAAAATCTTGGTTGTATCTTGTCTTG 58.648 33.333 0.00 0.00 33.01 3.02
4966 8678 4.104102 TCTTGGTTGTATCTTGTCTTGGGT 59.896 41.667 0.00 0.00 0.00 4.51
4967 8679 3.750371 TGGTTGTATCTTGTCTTGGGTG 58.250 45.455 0.00 0.00 0.00 4.61
4972 8684 3.135712 TGTATCTTGTCTTGGGTGTGTGT 59.864 43.478 0.00 0.00 0.00 3.72
4975 8687 2.091541 CTTGTCTTGGGTGTGTGTTGT 58.908 47.619 0.00 0.00 0.00 3.32
4978 8690 1.132262 GTCTTGGGTGTGTGTTGTGTG 59.868 52.381 0.00 0.00 0.00 3.82
4981 12655 2.407210 GGTGTGTGTTGTGTGCGG 59.593 61.111 0.00 0.00 0.00 5.69
4989 12663 3.882013 TTGTGTGCGGTGTTGGCG 61.882 61.111 0.00 0.00 0.00 5.69
4991 12665 4.605967 GTGTGCGGTGTTGGCGTG 62.606 66.667 0.00 0.00 0.00 5.34
4997 12671 1.585002 CGGTGTTGGCGTGTGTTTG 60.585 57.895 0.00 0.00 0.00 2.93
4999 12673 0.733729 GGTGTTGGCGTGTGTTTGTA 59.266 50.000 0.00 0.00 0.00 2.41
5000 12674 1.335496 GGTGTTGGCGTGTGTTTGTAT 59.665 47.619 0.00 0.00 0.00 2.29
5001 12675 2.603652 GGTGTTGGCGTGTGTTTGTATC 60.604 50.000 0.00 0.00 0.00 2.24
5002 12676 1.261885 TGTTGGCGTGTGTTTGTATCG 59.738 47.619 0.00 0.00 0.00 2.92
5003 12677 0.869068 TTGGCGTGTGTTTGTATCGG 59.131 50.000 0.00 0.00 0.00 4.18
5005 12679 0.441145 GGCGTGTGTTTGTATCGGTC 59.559 55.000 0.00 0.00 0.00 4.79
5006 12680 0.441145 GCGTGTGTTTGTATCGGTCC 59.559 55.000 0.00 0.00 0.00 4.46
5007 12681 1.785768 CGTGTGTTTGTATCGGTCCA 58.214 50.000 0.00 0.00 0.00 4.02
5008 12682 1.458064 CGTGTGTTTGTATCGGTCCAC 59.542 52.381 0.00 0.00 0.00 4.02
5009 12683 2.762745 GTGTGTTTGTATCGGTCCACT 58.237 47.619 0.00 0.00 0.00 4.00
5010 12684 2.735134 GTGTGTTTGTATCGGTCCACTC 59.265 50.000 0.00 0.00 0.00 3.51
5011 12685 2.365941 TGTGTTTGTATCGGTCCACTCA 59.634 45.455 0.00 0.00 0.00 3.41
5012 12686 2.993899 GTGTTTGTATCGGTCCACTCAG 59.006 50.000 0.00 0.00 0.00 3.35
5014 12688 3.070446 TGTTTGTATCGGTCCACTCAGTT 59.930 43.478 0.00 0.00 0.00 3.16
5015 12689 4.281435 TGTTTGTATCGGTCCACTCAGTTA 59.719 41.667 0.00 0.00 0.00 2.24
5016 12690 5.046878 TGTTTGTATCGGTCCACTCAGTTAT 60.047 40.000 0.00 0.00 0.00 1.89
5017 12691 5.670792 TTGTATCGGTCCACTCAGTTATT 57.329 39.130 0.00 0.00 0.00 1.40
5018 12692 5.006153 TGTATCGGTCCACTCAGTTATTG 57.994 43.478 0.00 0.00 0.00 1.90
5021 12695 2.894765 TCGGTCCACTCAGTTATTGTGA 59.105 45.455 0.00 0.00 33.95 3.58
5024 12698 4.620567 CGGTCCACTCAGTTATTGTGATGA 60.621 45.833 0.00 0.00 33.95 2.92
5035 12740 7.392953 TCAGTTATTGTGATGATGGTTGCTTTA 59.607 33.333 0.00 0.00 0.00 1.85
5036 12741 8.192774 CAGTTATTGTGATGATGGTTGCTTTAT 58.807 33.333 0.00 0.00 0.00 1.40
5084 13557 8.417780 TTTTTGTCAATGACCAGTAACAAATG 57.582 30.769 11.24 0.00 36.73 2.32
5085 13558 6.707440 TTGTCAATGACCAGTAACAAATGT 57.293 33.333 11.24 0.00 0.00 2.71
5155 13635 1.943116 GCTCTCAGCTCGCTCCAAGA 61.943 60.000 0.00 0.00 38.45 3.02
5199 13679 1.225704 GAGGTCAGCCATCCCCTTG 59.774 63.158 0.00 0.00 37.19 3.61
5229 13709 0.725784 CAACCTTTTGTAGCAGCGCG 60.726 55.000 0.00 0.00 0.00 6.86
5284 13764 4.831674 TCCATGAGCCATCACCATATAG 57.168 45.455 0.00 0.00 38.57 1.31
5294 13775 6.501805 AGCCATCACCATATAGAAACAGGATA 59.498 38.462 0.00 0.00 0.00 2.59
5314 13795 6.998673 AGGATAAATTAGCCAAGGTACATGTC 59.001 38.462 10.15 0.00 36.48 3.06
5396 13882 1.002257 ATTGCTCACCGCCATGACA 60.002 52.632 0.00 0.00 38.05 3.58
5406 13892 1.127701 CGCCATGACAAAAACGTTGG 58.872 50.000 0.00 0.00 0.00 3.77
5413 13913 1.590259 CAAAAACGTTGGTGGGGCG 60.590 57.895 0.00 0.00 0.00 6.13
5451 13951 0.882927 CCTCGGCGAAGGTTTTGACA 60.883 55.000 12.13 0.00 0.00 3.58
5482 13982 0.106708 AAGAGCGGTGAACAGAGCAA 59.893 50.000 0.00 0.00 0.00 3.91
5483 13983 0.320247 AGAGCGGTGAACAGAGCAAG 60.320 55.000 0.00 0.00 0.00 4.01
5487 13987 1.661112 GCGGTGAACAGAGCAAGTATC 59.339 52.381 0.00 0.00 0.00 2.24
5488 13988 2.271800 CGGTGAACAGAGCAAGTATCC 58.728 52.381 0.00 0.00 0.00 2.59
5492 13992 4.065088 GTGAACAGAGCAAGTATCCACAA 58.935 43.478 0.00 0.00 0.00 3.33
5493 13993 4.697352 GTGAACAGAGCAAGTATCCACAAT 59.303 41.667 0.00 0.00 0.00 2.71
5500 14389 4.012374 AGCAAGTATCCACAATTCCACAG 58.988 43.478 0.00 0.00 0.00 3.66
5613 14502 2.038952 TCAGCTGCTGTTTGTGATACCT 59.961 45.455 27.24 0.00 32.61 3.08
5646 14535 2.290260 TGGAAACGCATCACCAGAGAAT 60.290 45.455 0.00 0.00 0.00 2.40
5648 14537 2.029838 AACGCATCACCAGAGAATCC 57.970 50.000 0.00 0.00 33.66 3.01
5673 14562 3.275617 AGTGTTACCTCAAACAGTGCA 57.724 42.857 0.00 0.00 40.62 4.57
5708 14597 1.203428 TGGAAGACCATCCCTCCAAGA 60.203 52.381 0.00 0.00 41.77 3.02
5713 14602 2.040412 AGACCATCCCTCCAAGAACAAC 59.960 50.000 0.00 0.00 0.00 3.32
5714 14603 1.780309 ACCATCCCTCCAAGAACAACA 59.220 47.619 0.00 0.00 0.00 3.33
5715 14604 2.176798 ACCATCCCTCCAAGAACAACAA 59.823 45.455 0.00 0.00 0.00 2.83
5716 14605 2.821969 CCATCCCTCCAAGAACAACAAG 59.178 50.000 0.00 0.00 0.00 3.16
5717 14606 3.490348 CATCCCTCCAAGAACAACAAGT 58.510 45.455 0.00 0.00 0.00 3.16
5718 14607 2.930950 TCCCTCCAAGAACAACAAGTG 58.069 47.619 0.00 0.00 0.00 3.16
5719 14608 2.507886 TCCCTCCAAGAACAACAAGTGA 59.492 45.455 0.00 0.00 0.00 3.41
5720 14609 3.053991 TCCCTCCAAGAACAACAAGTGAA 60.054 43.478 0.00 0.00 0.00 3.18
5721 14610 3.316308 CCCTCCAAGAACAACAAGTGAAG 59.684 47.826 0.00 0.00 0.00 3.02
5722 14611 3.947834 CCTCCAAGAACAACAAGTGAAGT 59.052 43.478 0.00 0.00 0.00 3.01
5723 14612 5.123227 CCTCCAAGAACAACAAGTGAAGTA 58.877 41.667 0.00 0.00 0.00 2.24
5724 14613 5.588648 CCTCCAAGAACAACAAGTGAAGTAA 59.411 40.000 0.00 0.00 0.00 2.24
5725 14614 6.094881 CCTCCAAGAACAACAAGTGAAGTAAA 59.905 38.462 0.00 0.00 0.00 2.01
5726 14615 6.848451 TCCAAGAACAACAAGTGAAGTAAAC 58.152 36.000 0.00 0.00 0.00 2.01
5727 14616 6.657541 TCCAAGAACAACAAGTGAAGTAAACT 59.342 34.615 0.00 0.00 0.00 2.66
5728 14617 6.967199 CCAAGAACAACAAGTGAAGTAAACTC 59.033 38.462 0.00 0.00 0.00 3.01
5729 14618 7.148239 CCAAGAACAACAAGTGAAGTAAACTCT 60.148 37.037 0.00 0.00 0.00 3.24
5730 14619 7.308782 AGAACAACAAGTGAAGTAAACTCTG 57.691 36.000 0.00 0.00 0.00 3.35
5731 14620 6.879458 AGAACAACAAGTGAAGTAAACTCTGT 59.121 34.615 0.00 0.00 0.00 3.41
5732 14621 8.038944 AGAACAACAAGTGAAGTAAACTCTGTA 58.961 33.333 0.00 0.00 0.00 2.74
5733 14622 8.556213 AACAACAAGTGAAGTAAACTCTGTAA 57.444 30.769 0.00 0.00 0.00 2.41
5734 14623 7.971455 ACAACAAGTGAAGTAAACTCTGTAAC 58.029 34.615 0.00 0.00 0.00 2.50
5735 14624 7.822822 ACAACAAGTGAAGTAAACTCTGTAACT 59.177 33.333 0.00 0.00 0.00 2.24
5736 14625 8.665685 CAACAAGTGAAGTAAACTCTGTAACTT 58.334 33.333 0.00 0.00 34.96 2.66
5737 14626 8.788325 ACAAGTGAAGTAAACTCTGTAACTTT 57.212 30.769 0.00 0.00 32.51 2.66
5738 14627 9.880157 ACAAGTGAAGTAAACTCTGTAACTTTA 57.120 29.630 0.00 0.00 32.51 1.85
5740 14629 8.590719 AGTGAAGTAAACTCTGTAACTTTAGC 57.409 34.615 0.00 0.00 32.51 3.09
5741 14630 8.422566 AGTGAAGTAAACTCTGTAACTTTAGCT 58.577 33.333 0.00 0.00 32.51 3.32
5742 14631 8.488764 GTGAAGTAAACTCTGTAACTTTAGCTG 58.511 37.037 0.00 0.00 32.51 4.24
5743 14632 7.170998 TGAAGTAAACTCTGTAACTTTAGCTGC 59.829 37.037 0.00 0.00 32.51 5.25
5744 14633 6.760291 AGTAAACTCTGTAACTTTAGCTGCT 58.240 36.000 7.57 7.57 0.00 4.24
5745 14634 5.931441 AAACTCTGTAACTTTAGCTGCTG 57.069 39.130 13.43 0.00 0.00 4.41
5746 14635 4.608948 ACTCTGTAACTTTAGCTGCTGT 57.391 40.909 13.43 0.00 0.00 4.40
5747 14636 4.962155 ACTCTGTAACTTTAGCTGCTGTT 58.038 39.130 13.43 10.57 0.00 3.16
5748 14637 5.368989 ACTCTGTAACTTTAGCTGCTGTTT 58.631 37.500 13.43 2.49 0.00 2.83
5749 14638 5.237344 ACTCTGTAACTTTAGCTGCTGTTTG 59.763 40.000 13.43 2.48 0.00 2.93
5750 14639 4.024048 TCTGTAACTTTAGCTGCTGTTTGC 60.024 41.667 13.43 4.25 43.25 3.68
5751 14640 2.405892 AACTTTAGCTGCTGTTTGCG 57.594 45.000 13.43 0.00 46.63 4.85
5752 14641 1.593196 ACTTTAGCTGCTGTTTGCGA 58.407 45.000 13.43 0.00 46.63 5.10
5753 14642 2.154462 ACTTTAGCTGCTGTTTGCGAT 58.846 42.857 13.43 0.00 46.63 4.58
5754 14643 3.334691 ACTTTAGCTGCTGTTTGCGATA 58.665 40.909 13.43 0.00 46.63 2.92
5755 14644 3.125316 ACTTTAGCTGCTGTTTGCGATAC 59.875 43.478 13.43 0.00 46.63 2.24
5756 14645 1.651987 TAGCTGCTGTTTGCGATACC 58.348 50.000 13.43 0.00 46.63 2.73
5757 14646 0.036010 AGCTGCTGTTTGCGATACCT 60.036 50.000 0.00 0.00 46.63 3.08
5758 14647 0.375106 GCTGCTGTTTGCGATACCTC 59.625 55.000 0.00 0.00 46.63 3.85
5759 14648 1.725641 CTGCTGTTTGCGATACCTCA 58.274 50.000 0.00 0.00 46.63 3.86
5760 14649 2.076100 CTGCTGTTTGCGATACCTCAA 58.924 47.619 0.00 0.00 46.63 3.02
5761 14650 2.483877 CTGCTGTTTGCGATACCTCAAA 59.516 45.455 0.00 0.00 46.63 2.69
5762 14651 3.081061 TGCTGTTTGCGATACCTCAAAT 58.919 40.909 0.00 0.00 46.63 2.32
5763 14652 4.257731 TGCTGTTTGCGATACCTCAAATA 58.742 39.130 0.00 0.00 46.63 1.40
5764 14653 4.332543 TGCTGTTTGCGATACCTCAAATAG 59.667 41.667 6.97 6.97 46.63 1.73
5765 14654 4.332819 GCTGTTTGCGATACCTCAAATAGT 59.667 41.667 11.21 0.00 40.89 2.12
5766 14655 5.727791 GCTGTTTGCGATACCTCAAATAGTG 60.728 44.000 11.21 0.00 40.89 2.74
5767 14656 4.094294 TGTTTGCGATACCTCAAATAGTGC 59.906 41.667 0.00 0.00 35.06 4.40
5768 14657 3.535280 TGCGATACCTCAAATAGTGCA 57.465 42.857 0.00 0.00 0.00 4.57
5769 14658 3.194861 TGCGATACCTCAAATAGTGCAC 58.805 45.455 9.40 9.40 0.00 4.57
5770 14659 3.194861 GCGATACCTCAAATAGTGCACA 58.805 45.455 21.04 5.47 0.00 4.57
5771 14660 3.809832 GCGATACCTCAAATAGTGCACAT 59.190 43.478 21.04 7.78 0.00 3.21
5772 14661 4.273480 GCGATACCTCAAATAGTGCACATT 59.727 41.667 21.04 13.47 0.00 2.71
5773 14662 5.465390 GCGATACCTCAAATAGTGCACATTA 59.535 40.000 21.04 3.64 0.00 1.90
5774 14663 6.018262 GCGATACCTCAAATAGTGCACATTAA 60.018 38.462 21.04 1.29 0.00 1.40
5775 14664 7.466725 GCGATACCTCAAATAGTGCACATTAAA 60.467 37.037 21.04 7.59 0.00 1.52
5776 14665 7.850982 CGATACCTCAAATAGTGCACATTAAAC 59.149 37.037 21.04 0.00 0.00 2.01
5777 14666 8.807948 ATACCTCAAATAGTGCACATTAAACT 57.192 30.769 21.04 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 5.918576 TGAAGCAACGAACATATATACTCCG 59.081 40.000 0.00 0.00 0.00 4.63
95 96 6.700081 TGTGAAGCAACGAACATATATACTCC 59.300 38.462 0.00 0.00 0.00 3.85
280 286 2.492019 AAAAACGAGCAAAGCCTCAC 57.508 45.000 0.00 0.00 0.00 3.51
449 473 4.833380 ACTAACTTACTCTCAGTGGCTTGA 59.167 41.667 0.00 0.00 0.00 3.02
450 474 4.926238 CACTAACTTACTCTCAGTGGCTTG 59.074 45.833 0.00 0.00 34.35 4.01
451 475 4.561734 GCACTAACTTACTCTCAGTGGCTT 60.562 45.833 0.00 0.00 37.63 4.35
452 476 3.056465 GCACTAACTTACTCTCAGTGGCT 60.056 47.826 0.00 0.00 37.63 4.75
453 477 3.056465 AGCACTAACTTACTCTCAGTGGC 60.056 47.826 0.00 0.00 37.63 5.01
454 478 4.792521 AGCACTAACTTACTCTCAGTGG 57.207 45.455 0.00 0.00 37.63 4.00
464 488 5.929992 GTGTCACATGGTAAGCACTAACTTA 59.070 40.000 0.00 0.00 0.00 2.24
467 491 4.062293 TGTGTCACATGGTAAGCACTAAC 58.938 43.478 0.18 0.00 0.00 2.34
468 492 4.344359 TGTGTCACATGGTAAGCACTAA 57.656 40.909 0.18 0.00 0.00 2.24
469 493 4.551702 ATGTGTCACATGGTAAGCACTA 57.448 40.909 17.74 0.00 37.45 2.74
470 494 2.928801 TGTGTCACATGGTAAGCACT 57.071 45.000 0.18 0.00 0.00 4.40
480 504 3.138884 TGCTTACCACATGTGTCACAT 57.861 42.857 23.79 12.87 39.91 3.21
481 505 2.629336 TGCTTACCACATGTGTCACA 57.371 45.000 23.79 8.40 0.00 3.58
482 506 3.119849 GGATTGCTTACCACATGTGTCAC 60.120 47.826 23.79 9.40 0.00 3.67
483 507 3.081061 GGATTGCTTACCACATGTGTCA 58.919 45.455 23.79 8.71 0.00 3.58
486 510 4.236935 GTTTGGATTGCTTACCACATGTG 58.763 43.478 19.31 19.31 35.81 3.21
487 511 3.894427 TGTTTGGATTGCTTACCACATGT 59.106 39.130 0.00 0.00 35.81 3.21
488 512 4.517952 TGTTTGGATTGCTTACCACATG 57.482 40.909 0.00 0.00 35.81 3.21
491 515 5.537188 TGAATTGTTTGGATTGCTTACCAC 58.463 37.500 0.00 0.00 35.81 4.16
493 517 7.489574 TTTTGAATTGTTTGGATTGCTTACC 57.510 32.000 0.00 0.00 0.00 2.85
496 520 7.553760 ACTCTTTTTGAATTGTTTGGATTGCTT 59.446 29.630 0.00 0.00 0.00 3.91
497 521 7.049754 ACTCTTTTTGAATTGTTTGGATTGCT 58.950 30.769 0.00 0.00 0.00 3.91
498 522 7.250445 ACTCTTTTTGAATTGTTTGGATTGC 57.750 32.000 0.00 0.00 0.00 3.56
506 530 9.516314 GCACTAACTTACTCTTTTTGAATTGTT 57.484 29.630 0.00 0.00 0.00 2.83
508 532 9.736023 AAGCACTAACTTACTCTTTTTGAATTG 57.264 29.630 0.00 0.00 0.00 2.32
512 536 9.783256 GAAAAAGCACTAACTTACTCTTTTTGA 57.217 29.630 13.13 0.00 41.15 2.69
513 537 9.567848 TGAAAAAGCACTAACTTACTCTTTTTG 57.432 29.630 13.13 0.00 41.15 2.44
620 645 5.007682 GGTTGCCTAATTTCTTGTGTCCTA 58.992 41.667 0.00 0.00 0.00 2.94
624 649 4.280929 GGAAGGTTGCCTAATTTCTTGTGT 59.719 41.667 0.00 0.00 31.13 3.72
644 669 3.030291 ACAAAAGCCACAAGACATGGAA 58.970 40.909 0.00 0.00 39.87 3.53
655 680 2.966050 TGACAAACCAACAAAAGCCAC 58.034 42.857 0.00 0.00 0.00 5.01
665 690 3.196469 TCAGCACCAAATTGACAAACCAA 59.804 39.130 0.00 0.00 0.00 3.67
667 692 3.451141 TCAGCACCAAATTGACAAACC 57.549 42.857 0.00 0.00 0.00 3.27
674 699 5.381174 TCTCAAAGATCAGCACCAAATTG 57.619 39.130 0.00 0.00 0.00 2.32
699 724 0.967380 GAATGGCCAGTCCCACAAGG 60.967 60.000 22.62 0.00 37.79 3.61
736 761 3.056250 TGGTGACAGAGAAGATCAGCTTC 60.056 47.826 0.00 0.00 43.93 3.86
738 763 2.233431 GTGGTGACAGAGAAGATCAGCT 59.767 50.000 0.00 0.00 44.46 4.24
739 764 2.233431 AGTGGTGACAGAGAAGATCAGC 59.767 50.000 0.00 0.00 44.46 4.26
741 766 5.080337 AGTAAGTGGTGACAGAGAAGATCA 58.920 41.667 0.00 0.00 44.46 2.92
742 767 5.393678 GGAGTAAGTGGTGACAGAGAAGATC 60.394 48.000 0.00 0.00 44.46 2.75
909 959 1.736645 CTGGGTGAAGCGTACACGG 60.737 63.158 3.67 0.00 38.90 4.94
914 964 2.426024 GTGTCTATCTGGGTGAAGCGTA 59.574 50.000 0.00 0.00 0.00 4.42
920 973 4.285775 TGTGAATTGTGTCTATCTGGGTGA 59.714 41.667 0.00 0.00 0.00 4.02
985 1038 2.675348 TGTATGTGTGTGTGTGTGTGTG 59.325 45.455 0.00 0.00 0.00 3.82
989 1042 2.675348 TGTGTGTATGTGTGTGTGTGTG 59.325 45.455 0.00 0.00 0.00 3.82
990 1043 2.675844 GTGTGTGTATGTGTGTGTGTGT 59.324 45.455 0.00 0.00 0.00 3.72
993 1046 3.194062 TCTGTGTGTGTATGTGTGTGTG 58.806 45.455 0.00 0.00 0.00 3.82
994 1047 3.132111 TCTCTGTGTGTGTATGTGTGTGT 59.868 43.478 0.00 0.00 0.00 3.72
995 1048 3.716601 TCTCTGTGTGTGTATGTGTGTG 58.283 45.455 0.00 0.00 0.00 3.82
997 1050 4.233005 CTCTCTCTGTGTGTGTATGTGTG 58.767 47.826 0.00 0.00 0.00 3.82
998 1051 3.256879 CCTCTCTCTGTGTGTGTATGTGT 59.743 47.826 0.00 0.00 0.00 3.72
1001 1054 2.232208 TGCCTCTCTCTGTGTGTGTATG 59.768 50.000 0.00 0.00 0.00 2.39
1002 1055 2.495270 CTGCCTCTCTCTGTGTGTGTAT 59.505 50.000 0.00 0.00 0.00 2.29
1004 1057 0.678395 CTGCCTCTCTCTGTGTGTGT 59.322 55.000 0.00 0.00 0.00 3.72
1005 1058 0.964700 TCTGCCTCTCTCTGTGTGTG 59.035 55.000 0.00 0.00 0.00 3.82
1007 1060 1.473677 CTCTCTGCCTCTCTCTGTGTG 59.526 57.143 0.00 0.00 0.00 3.82
1009 1062 2.019249 CTCTCTCTGCCTCTCTCTGTG 58.981 57.143 0.00 0.00 0.00 3.66
1010 1063 1.915489 TCTCTCTCTGCCTCTCTCTGT 59.085 52.381 0.00 0.00 0.00 3.41
1011 1064 2.171237 TCTCTCTCTCTGCCTCTCTCTG 59.829 54.545 0.00 0.00 0.00 3.35
1012 1065 2.437281 CTCTCTCTCTCTGCCTCTCTCT 59.563 54.545 0.00 0.00 0.00 3.10
1013 1066 2.435805 TCTCTCTCTCTCTGCCTCTCTC 59.564 54.545 0.00 0.00 0.00 3.20
1014 1067 2.437281 CTCTCTCTCTCTCTGCCTCTCT 59.563 54.545 0.00 0.00 0.00 3.10
1017 1070 2.435805 TCTCTCTCTCTCTCTCTGCCTC 59.564 54.545 0.00 0.00 0.00 4.70
1019 1072 2.435805 TCTCTCTCTCTCTCTCTCTGCC 59.564 54.545 0.00 0.00 0.00 4.85
1020 1073 3.133721 ACTCTCTCTCTCTCTCTCTCTGC 59.866 52.174 0.00 0.00 0.00 4.26
1021 1074 4.403752 TCACTCTCTCTCTCTCTCTCTCTG 59.596 50.000 0.00 0.00 0.00 3.35
1023 1076 5.543507 ATCACTCTCTCTCTCTCTCTCTC 57.456 47.826 0.00 0.00 0.00 3.20
1024 1077 5.011533 GCTATCACTCTCTCTCTCTCTCTCT 59.988 48.000 0.00 0.00 0.00 3.10
1025 1078 5.221521 TGCTATCACTCTCTCTCTCTCTCTC 60.222 48.000 0.00 0.00 0.00 3.20
1027 1080 4.960938 TGCTATCACTCTCTCTCTCTCTC 58.039 47.826 0.00 0.00 0.00 3.20
1029 1082 4.067896 CCTGCTATCACTCTCTCTCTCTC 58.932 52.174 0.00 0.00 0.00 3.20
1031 1084 3.149196 CCCTGCTATCACTCTCTCTCTC 58.851 54.545 0.00 0.00 0.00 3.20
1034 1087 3.117169 ACATCCCTGCTATCACTCTCTCT 60.117 47.826 0.00 0.00 0.00 3.10
1035 1088 3.230134 ACATCCCTGCTATCACTCTCTC 58.770 50.000 0.00 0.00 0.00 3.20
1036 1089 3.326946 ACATCCCTGCTATCACTCTCT 57.673 47.619 0.00 0.00 0.00 3.10
1037 1090 3.640967 AGAACATCCCTGCTATCACTCTC 59.359 47.826 0.00 0.00 0.00 3.20
1038 1091 3.652055 AGAACATCCCTGCTATCACTCT 58.348 45.455 0.00 0.00 0.00 3.24
1040 1093 3.181471 CGAAGAACATCCCTGCTATCACT 60.181 47.826 0.00 0.00 0.00 3.41
1041 1094 3.126831 CGAAGAACATCCCTGCTATCAC 58.873 50.000 0.00 0.00 0.00 3.06
1042 1095 2.103094 CCGAAGAACATCCCTGCTATCA 59.897 50.000 0.00 0.00 0.00 2.15
1043 1096 2.760374 CCGAAGAACATCCCTGCTATC 58.240 52.381 0.00 0.00 0.00 2.08
1044 1097 1.202698 GCCGAAGAACATCCCTGCTAT 60.203 52.381 0.00 0.00 0.00 2.97
1045 1098 0.178068 GCCGAAGAACATCCCTGCTA 59.822 55.000 0.00 0.00 0.00 3.49
1223 1280 5.006386 ACAGACTTGAGGTTGGATTTGATC 58.994 41.667 0.00 0.00 0.00 2.92
1349 1406 3.761752 TGGTGAGTATGAAGTCATCGACA 59.238 43.478 0.00 0.00 38.79 4.35
1480 1540 2.945668 GCAGACTTGTTCTTCCACTTGT 59.054 45.455 0.00 0.00 28.96 3.16
1624 1715 3.834813 TCCTATCAGGTATGTGATGAGGC 59.165 47.826 0.00 0.00 37.72 4.70
1652 1752 3.443145 TCTTCTTCGTCTTCTCCTCCT 57.557 47.619 0.00 0.00 0.00 3.69
1654 1754 5.182380 TCTTCTTCTTCTTCGTCTTCTCCTC 59.818 44.000 0.00 0.00 0.00 3.71
1657 1757 6.084277 GTCTCTTCTTCTTCTTCGTCTTCTC 58.916 44.000 0.00 0.00 0.00 2.87
1658 1758 5.048294 GGTCTCTTCTTCTTCTTCGTCTTCT 60.048 44.000 0.00 0.00 0.00 2.85
1659 1759 5.158494 GGTCTCTTCTTCTTCTTCGTCTTC 58.842 45.833 0.00 0.00 0.00 2.87
1660 1760 4.585162 TGGTCTCTTCTTCTTCTTCGTCTT 59.415 41.667 0.00 0.00 0.00 3.01
1661 1761 4.022676 GTGGTCTCTTCTTCTTCTTCGTCT 60.023 45.833 0.00 0.00 0.00 4.18
1662 1762 4.231439 GTGGTCTCTTCTTCTTCTTCGTC 58.769 47.826 0.00 0.00 0.00 4.20
1663 1763 3.637229 TGTGGTCTCTTCTTCTTCTTCGT 59.363 43.478 0.00 0.00 0.00 3.85
1665 1765 4.446051 CGTTGTGGTCTCTTCTTCTTCTTC 59.554 45.833 0.00 0.00 0.00 2.87
1669 1769 3.113260 CCGTTGTGGTCTCTTCTTCTT 57.887 47.619 0.00 0.00 0.00 2.52
1694 1794 0.248215 CCATTTTGAGATGCGTCGCC 60.248 55.000 15.88 0.00 0.00 5.54
1695 1795 0.863119 GCCATTTTGAGATGCGTCGC 60.863 55.000 11.10 11.10 0.00 5.19
1698 1798 1.406539 GGATGCCATTTTGAGATGCGT 59.593 47.619 0.00 0.00 0.00 5.24
1771 1973 4.141688 ACTTATTTCCAATCTCCTCGTCCC 60.142 45.833 0.00 0.00 0.00 4.46
1773 1975 6.591313 GAACTTATTTCCAATCTCCTCGTC 57.409 41.667 0.00 0.00 0.00 4.20
1989 2209 7.480760 ACCTGGCAGTGAATATTTGTAAAAT 57.519 32.000 14.43 0.00 0.00 1.82
2154 3682 6.542370 TGCCGAGATTATTTTTAGGGAAAGAG 59.458 38.462 0.00 0.00 0.00 2.85
2163 3691 9.391006 ACAATTCTACTGCCGAGATTATTTTTA 57.609 29.630 0.00 0.00 0.00 1.52
2220 3984 6.313905 AGAGCTTGTTAGTACCAAAATGATCG 59.686 38.462 0.00 0.00 0.00 3.69
2231 3995 4.748892 TCTGATGCAGAGCTTGTTAGTAC 58.251 43.478 0.00 0.00 35.39 2.73
2283 4235 8.753133 GGACCAGATTTAGGATTCATTCTTTTT 58.247 33.333 0.00 0.00 0.00 1.94
2305 4257 6.152611 CAGGATTTAATCTTGACAGGGGACC 61.153 48.000 10.98 0.00 43.83 4.46
2341 4299 1.971357 AGGTCCGTATAGCCATCTTGG 59.029 52.381 0.00 0.00 41.55 3.61
2352 4310 1.054406 CCACCCCATCAGGTCCGTAT 61.054 60.000 0.00 0.00 38.39 3.06
2369 4357 3.328535 TCATCCTAGTGGCTACATCCA 57.671 47.619 2.02 0.00 0.00 3.41
2370 4358 3.556004 GCTTCATCCTAGTGGCTACATCC 60.556 52.174 2.02 0.00 0.00 3.51
2376 4364 0.835941 CAGGCTTCATCCTAGTGGCT 59.164 55.000 0.00 0.00 33.95 4.75
2438 4930 1.528076 GGCACACCACCACACATGA 60.528 57.895 0.00 0.00 35.26 3.07
2469 4961 1.730064 GCCATTGCTGAAAACATGCAG 59.270 47.619 0.00 0.00 38.01 4.41
2632 5130 1.476891 GTGAGGAAGATCGGTGTAGCA 59.523 52.381 0.00 0.00 0.00 3.49
3143 5655 7.147828 CCAGAACAGATATCCAAAGAGACTGTA 60.148 40.741 0.00 0.00 34.67 2.74
3145 5657 6.047870 CCAGAACAGATATCCAAAGAGACTG 58.952 44.000 0.00 0.00 0.00 3.51
3158 5670 3.181465 GGCCTCGAAATCCAGAACAGATA 60.181 47.826 0.00 0.00 0.00 1.98
3161 5673 1.373570 GGCCTCGAAATCCAGAACAG 58.626 55.000 0.00 0.00 0.00 3.16
3163 5675 0.253327 AGGGCCTCGAAATCCAGAAC 59.747 55.000 0.00 0.00 0.00 3.01
3166 5678 0.749454 CCAAGGGCCTCGAAATCCAG 60.749 60.000 6.46 0.00 0.00 3.86
3167 5679 1.204786 TCCAAGGGCCTCGAAATCCA 61.205 55.000 6.46 0.00 0.00 3.41
3168 5680 0.034477 TTCCAAGGGCCTCGAAATCC 60.034 55.000 6.46 0.00 0.00 3.01
3271 5852 2.482326 GCAGCCTTGCTATTTCCGT 58.518 52.632 0.00 0.00 46.95 4.69
3409 6332 0.787733 AGACCCCCTATCTCCCTAGC 59.212 60.000 0.00 0.00 0.00 3.42
3433 6356 4.890581 GCTCAGGTCCAGAGTCTCTAAATA 59.109 45.833 12.51 0.00 35.55 1.40
3668 6961 0.394192 CTGTGTGAGCCCTCTGTTGA 59.606 55.000 0.00 0.00 0.00 3.18
3757 7050 2.640184 CCCTTCGATTTCCCTTGGTAC 58.360 52.381 0.00 0.00 0.00 3.34
4419 7839 3.269538 TCTTTCCTCACGGTGTCAAAA 57.730 42.857 8.17 6.28 0.00 2.44
4420 7840 2.992124 TCTTTCCTCACGGTGTCAAA 57.008 45.000 8.17 5.14 0.00 2.69
4427 7847 0.674895 CTGGGCTTCTTTCCTCACGG 60.675 60.000 0.00 0.00 0.00 4.94
4493 7913 0.396278 CTCCTGGGCTGGGAAAATCC 60.396 60.000 0.00 0.00 35.23 3.01
4507 7927 2.435586 CCGTGCCAAGCTCTCCTG 60.436 66.667 0.00 0.00 0.00 3.86
4538 7958 4.340246 TCCCACTGCTGCTGCTGG 62.340 66.667 22.83 18.76 41.57 4.85
4583 8009 2.934801 GCCAAGCTCTTCTTCTCCTCAC 60.935 54.545 0.00 0.00 31.27 3.51
4675 8106 0.467384 GCTGCTGCTTCCAGGATCTA 59.533 55.000 8.53 0.00 38.81 1.98
4725 8162 1.134788 CCACACAGACGGATTACCTCC 60.135 57.143 0.00 0.00 41.07 4.30
4728 8165 0.249398 AGCCACACAGACGGATTACC 59.751 55.000 0.00 0.00 0.00 2.85
4731 8168 0.321653 GGAAGCCACACAGACGGATT 60.322 55.000 0.00 0.00 32.45 3.01
4733 8170 2.741092 GGAAGCCACACAGACGGA 59.259 61.111 0.00 0.00 0.00 4.69
4734 8171 2.358737 GGGAAGCCACACAGACGG 60.359 66.667 0.00 0.00 0.00 4.79
4735 8172 1.961277 GTGGGAAGCCACACAGACG 60.961 63.158 0.00 0.00 40.13 4.18
4736 8173 0.603975 GAGTGGGAAGCCACACAGAC 60.604 60.000 0.00 0.00 42.56 3.51
4738 8175 1.669115 CGAGTGGGAAGCCACACAG 60.669 63.158 0.00 0.00 42.56 3.66
4740 8177 0.034337 TTACGAGTGGGAAGCCACAC 59.966 55.000 0.00 0.00 42.56 3.82
4742 8179 1.066430 TGATTACGAGTGGGAAGCCAC 60.066 52.381 0.00 0.00 40.64 5.01
4743 8180 1.271856 TGATTACGAGTGGGAAGCCA 58.728 50.000 0.00 0.00 0.00 4.75
4744 8181 2.396590 TTGATTACGAGTGGGAAGCC 57.603 50.000 0.00 0.00 0.00 4.35
4745 8182 2.872858 GGATTGATTACGAGTGGGAAGC 59.127 50.000 0.00 0.00 0.00 3.86
4769 8259 6.183360 TGGTCAAAGAAAGAAAGATCCAACAC 60.183 38.462 0.00 0.00 0.00 3.32
4819 8477 2.573941 AGACTGCGGACGGTATAAAC 57.426 50.000 0.00 0.00 34.75 2.01
4820 8478 4.717233 TTAAGACTGCGGACGGTATAAA 57.283 40.909 0.00 0.00 34.75 1.40
4821 8479 4.924305 ATTAAGACTGCGGACGGTATAA 57.076 40.909 0.00 0.00 34.75 0.98
4822 8480 4.924305 AATTAAGACTGCGGACGGTATA 57.076 40.909 0.00 0.00 34.75 1.47
4823 8481 3.814005 AATTAAGACTGCGGACGGTAT 57.186 42.857 0.00 0.00 34.75 2.73
4828 8486 2.742053 TCTGCAAATTAAGACTGCGGAC 59.258 45.455 0.00 0.00 44.49 4.79
4829 8487 3.002791 CTCTGCAAATTAAGACTGCGGA 58.997 45.455 13.91 13.91 46.55 5.54
4865 8560 6.782298 ATAGTTGAAGATGATTGCGATGAG 57.218 37.500 0.00 0.00 0.00 2.90
4943 8655 4.104102 ACCCAAGACAAGATACAACCAAGA 59.896 41.667 0.00 0.00 0.00 3.02
4947 8659 3.502211 CACACCCAAGACAAGATACAACC 59.498 47.826 0.00 0.00 0.00 3.77
4948 8660 4.024048 CACACACCCAAGACAAGATACAAC 60.024 45.833 0.00 0.00 0.00 3.32
4956 8668 1.815613 CACAACACACACCCAAGACAA 59.184 47.619 0.00 0.00 0.00 3.18
4957 8669 1.271652 ACACAACACACACCCAAGACA 60.272 47.619 0.00 0.00 0.00 3.41
4958 8670 1.132262 CACACAACACACACCCAAGAC 59.868 52.381 0.00 0.00 0.00 3.01
4959 8671 1.458398 CACACAACACACACCCAAGA 58.542 50.000 0.00 0.00 0.00 3.02
4960 8672 0.179140 GCACACAACACACACCCAAG 60.179 55.000 0.00 0.00 0.00 3.61
4961 8673 1.886585 GCACACAACACACACCCAA 59.113 52.632 0.00 0.00 0.00 4.12
4962 8674 2.402572 CGCACACAACACACACCCA 61.403 57.895 0.00 0.00 0.00 4.51
4963 8675 2.407210 CGCACACAACACACACCC 59.593 61.111 0.00 0.00 0.00 4.61
4966 8678 1.237954 AACACCGCACACAACACACA 61.238 50.000 0.00 0.00 0.00 3.72
4967 8679 0.796491 CAACACCGCACACAACACAC 60.796 55.000 0.00 0.00 0.00 3.82
4972 8684 3.882013 CGCCAACACCGCACACAA 61.882 61.111 0.00 0.00 0.00 3.33
4978 8690 3.404141 AAACACACGCCAACACCGC 62.404 57.895 0.00 0.00 0.00 5.68
4981 12655 2.646250 GATACAAACACACGCCAACAC 58.354 47.619 0.00 0.00 0.00 3.32
4989 12663 2.735134 GAGTGGACCGATACAAACACAC 59.265 50.000 0.00 0.00 0.00 3.82
4991 12665 2.993899 CTGAGTGGACCGATACAAACAC 59.006 50.000 0.00 0.00 0.00 3.32
4997 12671 4.804139 CACAATAACTGAGTGGACCGATAC 59.196 45.833 0.00 0.00 0.00 2.24
4999 12673 3.513912 TCACAATAACTGAGTGGACCGAT 59.486 43.478 0.00 0.00 34.17 4.18
5000 12674 2.894765 TCACAATAACTGAGTGGACCGA 59.105 45.455 0.00 0.00 34.17 4.69
5001 12675 3.313012 TCACAATAACTGAGTGGACCG 57.687 47.619 0.00 0.00 34.17 4.79
5002 12676 4.832248 TCATCACAATAACTGAGTGGACC 58.168 43.478 0.00 0.00 34.17 4.46
5003 12677 5.295292 CCATCATCACAATAACTGAGTGGAC 59.705 44.000 0.00 0.00 34.17 4.02
5005 12679 5.188434 ACCATCATCACAATAACTGAGTGG 58.812 41.667 0.00 0.00 34.17 4.00
5006 12680 6.549061 CAACCATCATCACAATAACTGAGTG 58.451 40.000 0.00 0.00 34.67 3.51
5007 12681 5.124457 GCAACCATCATCACAATAACTGAGT 59.876 40.000 0.00 0.00 0.00 3.41
5008 12682 5.356190 AGCAACCATCATCACAATAACTGAG 59.644 40.000 0.00 0.00 0.00 3.35
5009 12683 5.255687 AGCAACCATCATCACAATAACTGA 58.744 37.500 0.00 0.00 0.00 3.41
5010 12684 5.571784 AGCAACCATCATCACAATAACTG 57.428 39.130 0.00 0.00 0.00 3.16
5011 12685 6.594788 AAAGCAACCATCATCACAATAACT 57.405 33.333 0.00 0.00 0.00 2.24
5095 13568 2.107378 TGGTGTCATTAAGTTGGAGCCA 59.893 45.455 0.00 0.00 0.00 4.75
5155 13635 5.764686 CGGTTTTACCAGGGTTTTAGTTAGT 59.235 40.000 0.00 0.00 38.47 2.24
5187 13667 0.251787 GTTTGACCAAGGGGATGGCT 60.252 55.000 0.00 0.00 44.75 4.75
5190 13670 1.453155 CGAGTTTGACCAAGGGGATG 58.547 55.000 0.00 0.00 38.05 3.51
5199 13679 2.159296 ACAAAAGGTTGCGAGTTTGACC 60.159 45.455 10.31 0.00 38.39 4.02
5229 13709 5.824624 TGAGAAGATCCATAACAATTGGCTC 59.175 40.000 10.83 0.00 34.06 4.70
5234 13714 8.501070 AGGAAGATGAGAAGATCCATAACAATT 58.499 33.333 0.00 0.00 32.47 2.32
5284 13764 6.775594 ACCTTGGCTAATTTATCCTGTTTC 57.224 37.500 0.00 0.00 0.00 2.78
5294 13775 4.929479 TGGACATGTACCTTGGCTAATTT 58.071 39.130 5.38 0.00 0.00 1.82
5314 13795 9.321562 ACCGTTAAAAGAACAGTGTATATATGG 57.678 33.333 0.00 0.00 0.00 2.74
5396 13882 2.787567 CCGCCCCACCAACGTTTTT 61.788 57.895 0.00 0.00 0.00 1.94
5406 13892 1.523938 GCTCTTGATACCGCCCCAC 60.524 63.158 0.00 0.00 0.00 4.61
5413 13913 2.433970 AGGCTTCTCTGCTCTTGATACC 59.566 50.000 0.00 0.00 0.00 2.73
5451 13951 2.510238 GCTCTTGCAGGCGTCGAT 60.510 61.111 0.00 0.00 39.41 3.59
5482 13982 3.264193 TGCTCTGTGGAATTGTGGATACT 59.736 43.478 0.00 0.00 37.61 2.12
5483 13983 3.609853 TGCTCTGTGGAATTGTGGATAC 58.390 45.455 0.00 0.00 0.00 2.24
5487 13987 2.227388 GTCTTGCTCTGTGGAATTGTGG 59.773 50.000 0.00 0.00 0.00 4.17
5488 13988 2.227388 GGTCTTGCTCTGTGGAATTGTG 59.773 50.000 0.00 0.00 0.00 3.33
5492 13992 0.687354 ACGGTCTTGCTCTGTGGAAT 59.313 50.000 0.00 0.00 0.00 3.01
5493 13993 0.033504 GACGGTCTTGCTCTGTGGAA 59.966 55.000 0.00 0.00 0.00 3.53
5500 14389 0.880278 TGTTGCTGACGGTCTTGCTC 60.880 55.000 20.64 15.64 0.00 4.26
5613 14502 2.159184 TGCGTTTCCAAAAACAGATGCA 60.159 40.909 0.00 0.00 44.13 3.96
5646 14535 3.456644 TGTTTGAGGTAACACTTCCAGGA 59.543 43.478 0.00 0.00 41.41 3.86
5648 14537 4.273480 CACTGTTTGAGGTAACACTTCCAG 59.727 45.833 0.00 0.00 41.41 3.86
5673 14562 3.755378 GTCTTCCAGAACAGATTGCACAT 59.245 43.478 0.00 0.00 0.00 3.21
5708 14597 8.448615 GTTACAGAGTTTACTTCACTTGTTGTT 58.551 33.333 0.00 0.00 0.00 2.83
5714 14603 9.043079 GCTAAAGTTACAGAGTTTACTTCACTT 57.957 33.333 0.00 0.00 33.11 3.16
5715 14604 8.422566 AGCTAAAGTTACAGAGTTTACTTCACT 58.577 33.333 0.00 0.00 33.11 3.41
5716 14605 8.488764 CAGCTAAAGTTACAGAGTTTACTTCAC 58.511 37.037 0.00 0.00 33.11 3.18
5717 14606 7.170998 GCAGCTAAAGTTACAGAGTTTACTTCA 59.829 37.037 0.00 0.00 33.11 3.02
5718 14607 7.385478 AGCAGCTAAAGTTACAGAGTTTACTTC 59.615 37.037 0.00 0.00 33.11 3.01
5719 14608 7.171678 CAGCAGCTAAAGTTACAGAGTTTACTT 59.828 37.037 0.00 0.00 33.11 2.24
5720 14609 6.647067 CAGCAGCTAAAGTTACAGAGTTTACT 59.353 38.462 0.00 0.00 33.11 2.24
5721 14610 6.424207 ACAGCAGCTAAAGTTACAGAGTTTAC 59.576 38.462 0.00 0.00 33.11 2.01
5722 14611 6.522054 ACAGCAGCTAAAGTTACAGAGTTTA 58.478 36.000 0.00 0.00 33.11 2.01
5723 14612 5.368989 ACAGCAGCTAAAGTTACAGAGTTT 58.631 37.500 0.00 0.00 35.18 2.66
5724 14613 4.962155 ACAGCAGCTAAAGTTACAGAGTT 58.038 39.130 0.00 0.00 0.00 3.01
5725 14614 4.608948 ACAGCAGCTAAAGTTACAGAGT 57.391 40.909 0.00 0.00 0.00 3.24
5726 14615 5.683859 CAAACAGCAGCTAAAGTTACAGAG 58.316 41.667 0.00 0.00 0.00 3.35
5727 14616 4.024048 GCAAACAGCAGCTAAAGTTACAGA 60.024 41.667 0.00 0.00 44.79 3.41
5728 14617 4.222114 GCAAACAGCAGCTAAAGTTACAG 58.778 43.478 0.00 0.00 44.79 2.74
5729 14618 3.303725 CGCAAACAGCAGCTAAAGTTACA 60.304 43.478 0.00 0.00 46.13 2.41
5730 14619 3.059188 TCGCAAACAGCAGCTAAAGTTAC 60.059 43.478 0.00 0.00 46.13 2.50
5731 14620 3.135225 TCGCAAACAGCAGCTAAAGTTA 58.865 40.909 0.00 0.00 46.13 2.24
5732 14621 1.946768 TCGCAAACAGCAGCTAAAGTT 59.053 42.857 0.00 0.00 46.13 2.66
5733 14622 1.593196 TCGCAAACAGCAGCTAAAGT 58.407 45.000 0.00 0.00 46.13 2.66
5734 14623 2.907910 ATCGCAAACAGCAGCTAAAG 57.092 45.000 0.00 0.00 46.13 1.85
5735 14624 2.418628 GGTATCGCAAACAGCAGCTAAA 59.581 45.455 0.00 0.00 46.13 1.85
5736 14625 2.006888 GGTATCGCAAACAGCAGCTAA 58.993 47.619 0.00 0.00 46.13 3.09
5737 14626 1.207089 AGGTATCGCAAACAGCAGCTA 59.793 47.619 0.00 0.00 46.13 3.32
5738 14627 0.036010 AGGTATCGCAAACAGCAGCT 60.036 50.000 0.00 0.00 46.13 4.24
5739 14628 0.375106 GAGGTATCGCAAACAGCAGC 59.625 55.000 0.00 0.00 46.13 5.25
5740 14629 1.725641 TGAGGTATCGCAAACAGCAG 58.274 50.000 0.00 0.00 46.13 4.24
5741 14630 2.177394 TTGAGGTATCGCAAACAGCA 57.823 45.000 0.00 0.00 46.13 4.41
5742 14631 3.764885 ATTTGAGGTATCGCAAACAGC 57.235 42.857 7.07 0.00 43.39 4.40
5743 14632 5.727791 GCACTATTTGAGGTATCGCAAACAG 60.728 44.000 8.70 8.70 43.39 3.16
5744 14633 4.094294 GCACTATTTGAGGTATCGCAAACA 59.906 41.667 7.07 0.00 43.39 2.83
5745 14634 4.094294 TGCACTATTTGAGGTATCGCAAAC 59.906 41.667 7.07 0.00 43.39 2.93
5746 14635 4.094294 GTGCACTATTTGAGGTATCGCAAA 59.906 41.667 10.32 7.37 44.36 3.68
5747 14636 3.621268 GTGCACTATTTGAGGTATCGCAA 59.379 43.478 10.32 0.00 0.00 4.85
5748 14637 3.194861 GTGCACTATTTGAGGTATCGCA 58.805 45.455 10.32 0.00 0.00 5.10
5749 14638 3.194861 TGTGCACTATTTGAGGTATCGC 58.805 45.455 19.41 0.00 0.00 4.58
5750 14639 5.991328 AATGTGCACTATTTGAGGTATCG 57.009 39.130 19.41 0.00 0.00 2.92
5751 14640 8.893727 AGTTTAATGTGCACTATTTGAGGTATC 58.106 33.333 19.41 0.00 0.00 2.24
5752 14641 8.807948 AGTTTAATGTGCACTATTTGAGGTAT 57.192 30.769 19.41 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.