AutoCloner

Multiple sequence alignment - TraesCS7A01G005800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G005800	chr7A	100.000	2651	0	0	1	2651	2852274	2849624	0.000000e+00	4896.0
1	TraesCS7A01G005800	chr7A	95.392	1606	35	12	2	1604	2555174	2553605	0.000000e+00	2519.0
2	TraesCS7A01G005800	chr7A	96.973	958	20	3	1695	2651	2553597	2552648	0.000000e+00	1600.0
3	TraesCS7A01G005800	chr7A	88.583	727	65	10	892	1604	3379487	3380209	0.000000e+00	867.0
4	TraesCS7A01G005800	chr7A	86.892	473	53	6	1693	2163	3380215	3380680	3.020000e-144	521.0
5	TraesCS7A01G005800	chr7A	87.915	422	47	2	1689	2110	3003751	3003334	6.590000e-136	494.0
6	TraesCS7A01G005800	chr7A	88.480	408	44	1	1689	2096	3581531	3581935	8.530000e-135	490.0
7	TraesCS7A01G005800	chr7A	90.411	146	11	3	2507	2651	3002374	3002231	3.480000e-44	189.0
8	TraesCS7A01G005800	chr7A	89.726	146	14	1	2507	2651	3582923	3583068	4.510000e-43	185.0
9	TraesCS7A01G005800	chr7D	95.950	1605	39	7	1	1604	3732240	3730661	0.000000e+00	2580.0
10	TraesCS7A01G005800	chr7D	96.891	965	24	3	1689	2651	3730659	3729699	0.000000e+00	1611.0
11	TraesCS7A01G005800	chr7D	90.796	641	55	3	965	1604	3581690	3582327	0.000000e+00	854.0
12	TraesCS7A01G005800	chr7D	91.191	613	54	0	992	1604	3438501	3439113	0.000000e+00	833.0
13	TraesCS7A01G005800	chr7D	90.769	130	12	0	2522	2651	3699339	3699468	9.750000e-40	174.0
14	TraesCS7A01G005800	chr7D	89.130	138	14	1	2515	2651	3583322	3583459	1.260000e-38	171.0
15	TraesCS7A01G005800	chr7D	86.207	58	8	0	575	632	69778213	69778270	2.200000e-06	63.9
16	TraesCS7A01G005800	chr7D	86.207	58	8	0	575	632	69801931	69801988	2.200000e-06	63.9
17	TraesCS7A01G005800	chr4A	90.951	652	54	4	952	1603	742271708	742271062	0.000000e+00	872.0
18	TraesCS7A01G005800	chr4A	91.094	640	55	1	965	1604	739831306	739831943	0.000000e+00	865.0
19	TraesCS7A01G005800	chr4A	90.938	640	56	1	965	1604	740063302	740062665	0.000000e+00	859.0
20	TraesCS7A01G005800	chr4A	91.176	612	54	0	993	1604	739806199	739806810	0.000000e+00	832.0
21	TraesCS7A01G005800	chr4A	88.235	561	53	6	1689	2240	739831945	739832501	0.000000e+00	658.0
22	TraesCS7A01G005800	chr4A	88.099	563	50	13	1689	2240	742271059	742270503	0.000000e+00	652.0
23	TraesCS7A01G005800	chr4A	89.036	529	46	8	1689	2209	740062663	740062139	0.000000e+00	645.0
24	TraesCS7A01G005800	chr4A	87.522	561	56	10	1689	2240	733928504	733927949	1.040000e-178	636.0
25	TraesCS7A01G005800	chr4A	87.565	193	20	4	2461	2651	739832847	739833037	1.240000e-53	220.0
26	TraesCS7A01G005800	chr4A	85.417	192	24	4	2461	2651	740061762	740061574	2.080000e-46	196.0
27	TraesCS7A01G005800	chr4A	84.536	194	25	4	2461	2651	742270157	742269966	1.250000e-43	187.0
28	TraesCS7A01G005800	chr1D	94.318	88	5	0	1603	1690	163770451	163770364	4.600000e-28	135.0
29	TraesCS7A01G005800	chr1D	94.318	88	5	0	1603	1690	163775536	163775449	4.600000e-28	135.0
30	TraesCS7A01G005800	chr1D	90.110	91	9	0	1599	1689	409914537	409914447	4.640000e-23	119.0
31	TraesCS7A01G005800	chr5B	93.023	86	5	1	1604	1689	450577718	450577634	9.960000e-25	124.0
32	TraesCS7A01G005800	chr5B	90.909	88	8	0	1602	1689	12859162	12859249	4.640000e-23	119.0
33	TraesCS7A01G005800	chr2B	90.909	88	8	0	1603	1690	139229971	139230058	4.640000e-23	119.0
34	TraesCS7A01G005800	chr6B	90.909	88	6	2	1603	1689	125340405	125340319	1.670000e-22	117.0
35	TraesCS7A01G005800	chr5A	90.698	86	8	0	1604	1689	557345938	557345853	6.000000e-22	115.0
36	TraesCS7A01G005800	chr6D	89.888	89	8	1	1602	1689	142846401	142846313	2.160000e-21	113.0
37	TraesCS7A01G005800	chr3D	88.732	71	6	2	504	574	593206541	593206473	4.700000e-13	86.1
38	TraesCS7A01G005800	chr3D	93.750	48	1	2	576	621	238624223	238624176	1.320000e-08	71.3
39	TraesCS7A01G005800	chrUn	94.118	51	3	0	574	624	27363069	27363119	7.870000e-11	78.7
40	TraesCS7A01G005800	chr3A	89.831	59	4	2	574	631	457465193	457465250	1.020000e-09	75.0
41	TraesCS7A01G005800	chr2A	88.136	59	5	2	574	632	1329682	1329626	4.740000e-08	69.4
42	TraesCS7A01G005800	chr4D	85.714	63	4	4	574	631	499285385	499285323	7.920000e-06	62.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G005800	chr7A	2849624	2852274	2650	True	4896.000000	4896	100.000000	1	2651	1	chr7A.!!$R1	2650
1	TraesCS7A01G005800	chr7A	2552648	2555174	2526	True	2059.500000	2519	96.182500	2	2651	2	chr7A.!!$R2	2649
2	TraesCS7A01G005800	chr7A	3379487	3380680	1193	False	694.000000	867	87.737500	892	2163	2	chr7A.!!$F1	1271
3	TraesCS7A01G005800	chr7A	3002231	3003751	1520	True	341.500000	494	89.163000	1689	2651	2	chr7A.!!$R3	962
4	TraesCS7A01G005800	chr7A	3581531	3583068	1537	False	337.500000	490	89.103000	1689	2651	2	chr7A.!!$F2	962
5	TraesCS7A01G005800	chr7D	3729699	3732240	2541	True	2095.500000	2580	96.420500	1	2651	2	chr7D.!!$R1	2650
6	TraesCS7A01G005800	chr7D	3438501	3439113	612	False	833.000000	833	91.191000	992	1604	1	chr7D.!!$F1	612
7	TraesCS7A01G005800	chr7D	3581690	3583459	1769	False	512.500000	854	89.963000	965	2651	2	chr7D.!!$F5	1686
8	TraesCS7A01G005800	chr4A	739806199	739806810	611	False	832.000000	832	91.176000	993	1604	1	chr4A.!!$F1	611
9	TraesCS7A01G005800	chr4A	733927949	733928504	555	True	636.000000	636	87.522000	1689	2240	1	chr4A.!!$R1	551
10	TraesCS7A01G005800	chr4A	739831306	739833037	1731	False	581.000000	865	88.964667	965	2651	3	chr4A.!!$F2	1686
11	TraesCS7A01G005800	chr4A	742269966	742271708	1742	True	570.333333	872	87.862000	952	2651	3	chr4A.!!$R3	1699
12	TraesCS7A01G005800	chr4A	740061574	740063302	1728	True	566.666667	859	88.463667	965	2651	3	chr4A.!!$R2	1686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
552	555	0.323451	GGTTCAAAGGCCGGGAGAAT	60.323	55.0	2.18	0.0	0.0	2.4	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1678	1695	0.108615	CACAACGGCTACTCCCTCTG	60.109	60.0	0.0	0.0	0.0	3.35	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
84	85	1.202099	TATCGCCCTTCCCACCAACA	61.202	55.000	0.00	0.00	0.00	3.33
198	199	5.827797	ACAGATTCAGGTTCAGCAAAGTTTA	59.172	36.000	0.00	0.00	0.00	2.01
231	232	2.413351	GCGCTGGATCGTGAGCTA	59.587	61.111	0.00	0.00	32.70	3.32
300	301	4.469883	CAGTTGTGCAGCCTGAGT	57.530	55.556	0.00	0.00	0.00	3.41
301	302	1.947013	CAGTTGTGCAGCCTGAGTG	59.053	57.895	0.00	0.00	0.00	3.51
302	303	1.895707	AGTTGTGCAGCCTGAGTGC	60.896	57.895	0.00	0.00	41.59	4.40
303	304	2.595463	TTGTGCAGCCTGAGTGCC	60.595	61.111	0.00	0.00	40.43	5.01
304	305	3.124051	TTGTGCAGCCTGAGTGCCT	62.124	57.895	0.00	0.00	40.43	4.75
305	306	3.054503	GTGCAGCCTGAGTGCCTG	61.055	66.667	0.00	0.00	40.43	4.85
306	307	3.243816	TGCAGCCTGAGTGCCTGA	61.244	61.111	0.00	0.00	40.43	3.86
327	328	2.351276	CCCGGGTTCAGTTCCCAG	59.649	66.667	14.18	0.00	44.81	4.45
328	329	2.221299	CCCGGGTTCAGTTCCCAGA	61.221	63.158	14.18	0.00	44.81	3.86
335	336	2.135933	GTTCAGTTCCCAGAAGTGACG	58.864	52.381	13.11	0.00	30.03	4.35
337	338	0.951040	CAGTTCCCAGAAGTGACGGC	60.951	60.000	6.34	0.00	0.00	5.68
347	348	4.152625	GTGACGGCTGATGCACGC	62.153	66.667	0.00	0.00	41.91	5.34
552	555	0.323451	GGTTCAAAGGCCGGGAGAAT	60.323	55.000	2.18	0.00	0.00	2.40
635	639	1.804748	CTTTCCGAAGAGAAAACCGGG	59.195	52.381	6.32	0.00	42.03	5.73
694	698	4.359706	TGATTATGAACATCTGACGGTCG	58.640	43.478	3.34	0.00	0.00	4.79
735	739	2.264005	TAACAGCCGGATGTGTTTGT	57.736	45.000	28.59	13.07	37.96	2.83
858	862	9.914131	GTCTAGCCTTTTTCAAGATTATTTTGT	57.086	29.630	0.00	0.00	30.57	2.83
1290	1307	3.522731	CGGGACTCCCTCAGCGAG	61.523	72.222	12.62	0.00	42.67	5.03
1501	1518	0.390603	TGGCATTGCTGAGCATTTGC	60.391	50.000	25.63	25.63	42.93	3.68
1604	1621	5.826737	CCAAACATGATAAAGGCTCTCATCT	59.173	40.000	0.00	0.00	0.00	2.90
1605	1622	6.994496	CCAAACATGATAAAGGCTCTCATCTA	59.006	38.462	0.00	0.00	0.00	1.98
1606	1623	7.664731	CCAAACATGATAAAGGCTCTCATCTAT	59.335	37.037	0.00	0.00	0.00	1.98
1607	1624	9.064706	CAAACATGATAAAGGCTCTCATCTATT	57.935	33.333	0.00	0.00	0.00	1.73
1608	1625	8.845413	AACATGATAAAGGCTCTCATCTATTC	57.155	34.615	0.00	0.00	0.00	1.75
1609	1626	7.393216	ACATGATAAAGGCTCTCATCTATTCC	58.607	38.462	0.00	0.00	0.00	3.01
1610	1627	6.365970	TGATAAAGGCTCTCATCTATTCCC	57.634	41.667	0.00	0.00	0.00	3.97
1611	1628	6.087456	TGATAAAGGCTCTCATCTATTCCCT	58.913	40.000	0.00	0.00	0.00	4.20
1612	1629	4.972751	AAAGGCTCTCATCTATTCCCTC	57.027	45.455	0.00	0.00	0.00	4.30
1613	1630	2.901291	AGGCTCTCATCTATTCCCTCC	58.099	52.381	0.00	0.00	0.00	4.30
1614	1631	1.548269	GGCTCTCATCTATTCCCTCCG	59.452	57.143	0.00	0.00	0.00	4.63
1615	1632	2.243810	GCTCTCATCTATTCCCTCCGT	58.756	52.381	0.00	0.00	0.00	4.69
1616	1633	2.230266	GCTCTCATCTATTCCCTCCGTC	59.770	54.545	0.00	0.00	0.00	4.79
1617	1634	2.823154	CTCTCATCTATTCCCTCCGTCC	59.177	54.545	0.00	0.00	0.00	4.79
1618	1635	1.896465	CTCATCTATTCCCTCCGTCCC	59.104	57.143	0.00	0.00	0.00	4.46
1619	1636	1.219469	TCATCTATTCCCTCCGTCCCA	59.781	52.381	0.00	0.00	0.00	4.37
1620	1637	2.158158	TCATCTATTCCCTCCGTCCCAT	60.158	50.000	0.00	0.00	0.00	4.00
1621	1638	3.076937	TCATCTATTCCCTCCGTCCCATA	59.923	47.826	0.00	0.00	0.00	2.74
1622	1639	3.623466	TCTATTCCCTCCGTCCCATAA	57.377	47.619	0.00	0.00	0.00	1.90
1623	1640	4.141990	TCTATTCCCTCCGTCCCATAAT	57.858	45.455	0.00	0.00	0.00	1.28
1624	1641	5.279562	TCTATTCCCTCCGTCCCATAATA	57.720	43.478	0.00	0.00	0.00	0.98
1625	1642	5.850278	TCTATTCCCTCCGTCCCATAATAT	58.150	41.667	0.00	0.00	0.00	1.28
1626	1643	6.988725	TCTATTCCCTCCGTCCCATAATATA	58.011	40.000	0.00	0.00	0.00	0.86
1627	1644	7.424172	TCTATTCCCTCCGTCCCATAATATAA	58.576	38.462	0.00	0.00	0.00	0.98
1628	1645	6.561519	ATTCCCTCCGTCCCATAATATAAG	57.438	41.667	0.00	0.00	0.00	1.73
1629	1646	5.279562	TCCCTCCGTCCCATAATATAAGA	57.720	43.478	0.00	0.00	0.00	2.10
1630	1647	5.657446	TCCCTCCGTCCCATAATATAAGAA	58.343	41.667	0.00	0.00	0.00	2.52
1631	1648	6.269194	TCCCTCCGTCCCATAATATAAGAAT	58.731	40.000	0.00	0.00	0.00	2.40
1632	1649	6.156256	TCCCTCCGTCCCATAATATAAGAATG	59.844	42.308	0.00	0.00	0.00	2.67
1633	1650	6.070194	CCCTCCGTCCCATAATATAAGAATGT	60.070	42.308	0.00	0.00	0.00	2.71
1634	1651	7.394816	CCTCCGTCCCATAATATAAGAATGTT	58.605	38.462	0.00	0.00	0.00	2.71
1635	1652	7.883311	CCTCCGTCCCATAATATAAGAATGTTT	59.117	37.037	0.00	0.00	0.00	2.83
1636	1653	9.284968	CTCCGTCCCATAATATAAGAATGTTTT	57.715	33.333	0.00	0.00	0.00	2.43
1637	1654	9.635404	TCCGTCCCATAATATAAGAATGTTTTT	57.365	29.630	0.00	0.00	0.00	1.94
1638	1655	9.893305	CCGTCCCATAATATAAGAATGTTTTTC	57.107	33.333	0.00	0.00	0.00	2.29
1662	1679	8.973835	TCAAACTGTTTTAGATTGAAAAACGT	57.026	26.923	2.41	0.00	45.52	3.99
1663	1680	9.413048	TCAAACTGTTTTAGATTGAAAAACGTT	57.587	25.926	2.41	0.00	45.52	3.99
1664	1681	9.670180	CAAACTGTTTTAGATTGAAAAACGTTC	57.330	29.630	0.00	0.00	45.52	3.95
1665	1682	9.634163	AAACTGTTTTAGATTGAAAAACGTTCT	57.366	25.926	0.00	0.00	45.52	3.01
1666	1683	9.634163	AACTGTTTTAGATTGAAAAACGTTCTT	57.366	25.926	0.00	0.00	45.52	2.52
1868	1885	5.083533	TCAAACCAGCAAACAGTCAAATT	57.916	34.783	0.00	0.00	0.00	1.82
1984	2007	0.612229	CCACTGCTCTCTGGTCACAT	59.388	55.000	0.00	0.00	0.00	3.21
2060	2083	5.926542	TGACCAACTTATCGAAGAACTCAAG	59.073	40.000	0.00	0.00	43.58	3.02
2230	2260	7.202016	TCATTCTGAAGTTTGTACAATGGTC	57.798	36.000	9.56	7.45	0.00	4.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
8	9	0.038892	GTCACTTGGCTGCAATGGTG	60.039	55.000	0.50	3.23	0.00	4.17
114	115	0.622136	TACTCCTGGCGTCTCACCTA	59.378	55.000	0.00	0.00	0.00	3.08
198	199	4.452733	GCCCCTTAGTCGCGTGCT	62.453	66.667	5.77	8.64	0.00	4.40
231	232	1.166531	GCAAAAGCTCAGTCCCGTGT	61.167	55.000	0.00	0.00	0.00	4.49
272	273	1.290955	CACAACTGCATGCCCAAGG	59.709	57.895	16.68	3.54	0.00	3.61
273	274	1.373748	GCACAACTGCATGCCCAAG	60.374	57.895	16.68	8.71	43.62	3.61
327	328	1.790387	GTGCATCAGCCGTCACTTC	59.210	57.895	0.00	0.00	41.13	3.01
328	329	2.029288	CGTGCATCAGCCGTCACTT	61.029	57.895	0.00	0.00	41.13	3.16
360	361	4.645136	GGTCCTCAATAAAATGGGAGAACC	59.355	45.833	0.00	0.00	40.81	3.62
361	362	5.261216	TGGTCCTCAATAAAATGGGAGAAC	58.739	41.667	0.00	0.00	0.00	3.01
552	555	8.434589	ACCATAAAATTGGGAGAGAATTTCAA	57.565	30.769	0.00	0.00	41.35	2.69
635	639	1.669779	GGACATCACATGAAGCTCAGC	59.330	52.381	0.00	0.00	0.00	4.26
858	862	0.317160	GACGTCATCAGTGGTGGTGA	59.683	55.000	11.55	0.00	41.81	4.02
1290	1307	3.263425	TCACCAGGAAGGAACATCTTACC	59.737	47.826	0.00	0.00	41.22	2.85
1604	1621	7.424172	TCTTATATTATGGGACGGAGGGAATA	58.576	38.462	0.00	0.00	0.00	1.75
1605	1622	6.269194	TCTTATATTATGGGACGGAGGGAAT	58.731	40.000	0.00	0.00	0.00	3.01
1606	1623	5.657446	TCTTATATTATGGGACGGAGGGAA	58.343	41.667	0.00	0.00	0.00	3.97
1607	1624	5.279562	TCTTATATTATGGGACGGAGGGA	57.720	43.478	0.00	0.00	0.00	4.20
1608	1625	6.070194	ACATTCTTATATTATGGGACGGAGGG	60.070	42.308	0.00	0.00	0.00	4.30
1609	1626	6.947464	ACATTCTTATATTATGGGACGGAGG	58.053	40.000	0.00	0.00	0.00	4.30
1610	1627	8.848474	AAACATTCTTATATTATGGGACGGAG	57.152	34.615	0.00	0.00	0.00	4.63
1611	1628	9.635404	AAAAACATTCTTATATTATGGGACGGA	57.365	29.630	0.00	0.00	0.00	4.69
1612	1629	9.893305	GAAAAACATTCTTATATTATGGGACGG	57.107	33.333	0.00	0.00	0.00	4.79
1636	1653	9.413048	ACGTTTTTCAATCTAAAACAGTTTGAA	57.587	25.926	0.00	6.46	45.10	2.69
1637	1654	8.973835	ACGTTTTTCAATCTAAAACAGTTTGA	57.026	26.923	0.00	0.00	42.68	2.69
1638	1655	9.670180	GAACGTTTTTCAATCTAAAACAGTTTG	57.330	29.630	0.46	0.00	42.68	2.93
1639	1656	9.634163	AGAACGTTTTTCAATCTAAAACAGTTT	57.366	25.926	0.46	0.00	42.68	2.66
1640	1657	9.634163	AAGAACGTTTTTCAATCTAAAACAGTT	57.366	25.926	0.46	14.70	42.68	3.16
1657	1674	9.326413	CCTCTGTTCCATAATATAAGAACGTTT	57.674	33.333	0.46	0.00	41.17	3.60
1658	1675	7.931948	CCCTCTGTTCCATAATATAAGAACGTT	59.068	37.037	0.00	0.00	41.17	3.99
1659	1676	7.289317	TCCCTCTGTTCCATAATATAAGAACGT	59.711	37.037	9.40	0.00	41.17	3.99
1660	1677	7.667557	TCCCTCTGTTCCATAATATAAGAACG	58.332	38.462	9.40	0.00	41.17	3.95
1661	1678	8.652290	ACTCCCTCTGTTCCATAATATAAGAAC	58.348	37.037	7.86	7.86	39.22	3.01
1662	1679	8.798975	ACTCCCTCTGTTCCATAATATAAGAA	57.201	34.615	0.00	0.00	0.00	2.52
1663	1680	9.535170	CTACTCCCTCTGTTCCATAATATAAGA	57.465	37.037	0.00	0.00	0.00	2.10
1664	1681	8.254508	GCTACTCCCTCTGTTCCATAATATAAG	58.745	40.741	0.00	0.00	0.00	1.73
1665	1682	7.180408	GGCTACTCCCTCTGTTCCATAATATAA	59.820	40.741	0.00	0.00	0.00	0.98
1666	1683	6.668283	GGCTACTCCCTCTGTTCCATAATATA	59.332	42.308	0.00	0.00	0.00	0.86
1667	1684	5.485708	GGCTACTCCCTCTGTTCCATAATAT	59.514	44.000	0.00	0.00	0.00	1.28
1668	1685	4.838986	GGCTACTCCCTCTGTTCCATAATA	59.161	45.833	0.00	0.00	0.00	0.98
1669	1686	3.648545	GGCTACTCCCTCTGTTCCATAAT	59.351	47.826	0.00	0.00	0.00	1.28
1670	1687	3.039011	GGCTACTCCCTCTGTTCCATAA	58.961	50.000	0.00	0.00	0.00	1.90
1671	1688	2.679082	GGCTACTCCCTCTGTTCCATA	58.321	52.381	0.00	0.00	0.00	2.74
1672	1689	1.501582	GGCTACTCCCTCTGTTCCAT	58.498	55.000	0.00	0.00	0.00	3.41
1673	1690	0.970937	CGGCTACTCCCTCTGTTCCA	60.971	60.000	0.00	0.00	0.00	3.53
1674	1691	0.971447	ACGGCTACTCCCTCTGTTCC	60.971	60.000	0.00	0.00	0.00	3.62
1675	1692	0.896226	AACGGCTACTCCCTCTGTTC	59.104	55.000	0.00	0.00	0.00	3.18
1676	1693	0.608640	CAACGGCTACTCCCTCTGTT	59.391	55.000	0.00	0.00	0.00	3.16
1677	1694	0.542232	ACAACGGCTACTCCCTCTGT	60.542	55.000	0.00	0.00	0.00	3.41
1678	1695	0.108615	CACAACGGCTACTCCCTCTG	60.109	60.000	0.00	0.00	0.00	3.35
1679	1696	0.542232	ACACAACGGCTACTCCCTCT	60.542	55.000	0.00	0.00	0.00	3.69
1680	1697	0.108756	GACACAACGGCTACTCCCTC	60.109	60.000	0.00	0.00	0.00	4.30
1681	1698	1.542187	GGACACAACGGCTACTCCCT	61.542	60.000	0.00	0.00	0.00	4.20
1682	1699	1.079336	GGACACAACGGCTACTCCC	60.079	63.158	0.00	0.00	0.00	4.30
1683	1700	0.320697	AAGGACACAACGGCTACTCC	59.679	55.000	0.00	0.00	0.00	3.85
1684	1701	1.000506	TCAAGGACACAACGGCTACTC	59.999	52.381	0.00	0.00	0.00	2.59
1685	1702	1.045407	TCAAGGACACAACGGCTACT	58.955	50.000	0.00	0.00	0.00	2.57
1686	1703	2.094762	ATCAAGGACACAACGGCTAC	57.905	50.000	0.00	0.00	0.00	3.58
1687	1704	2.422597	CAATCAAGGACACAACGGCTA	58.577	47.619	0.00	0.00	0.00	3.93
1868	1885	1.571773	GCCCCTCCTCCTTTGGCTTA	61.572	60.000	0.00	0.00	39.05	3.09
1984	2007	1.215912	CCATCATTGCTTTGCGGCA	59.784	52.632	0.00	0.00	40.74	5.69
2060	2083	1.807142	CTCCTTCCAAGAAGGCGTTTC	59.193	52.381	16.95	0.00	37.34	2.78
2230	2260	6.414408	CTCCACTAGCTACATTTTTCAGTG	57.586	41.667	0.00	0.00	33.40	3.66

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.