AutoCloner

Multiple sequence alignment - TraesCS7A01G005700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G005700	chr7A	100.000	3934	0	0	980	4913	2827338	2831271	0.000000e+00	7265.0
1	TraesCS7A01G005700	chr7A	96.036	3431	129	3	981	4407	2093388	2096815	0.000000e+00	5576.0
2	TraesCS7A01G005700	chr7A	89.208	2437	246	15	1904	4329	3780565	3782995	0.000000e+00	3027.0
3	TraesCS7A01G005700	chr7A	100.000	762	0	0	1	762	2826359	2827120	0.000000e+00	1408.0
4	TraesCS7A01G005700	chr7A	96.514	459	15	1	4455	4913	2097036	2097493	0.000000e+00	758.0
5	TraesCS7A01G005700	chr7A	95.122	451	19	3	313	762	2092705	2093153	0.000000e+00	708.0
6	TraesCS7A01G005700	chr7A	81.114	916	136	13	993	1887	3779574	3780473	0.000000e+00	699.0
7	TraesCS7A01G005700	chr7A	91.346	208	9	3	1	205	2092509	2092710	4.840000e-70	276.0
8	TraesCS7A01G005700	chr7A	82.524	206	15	13	4548	4734	3783252	3783455	1.420000e-35	161.0
9	TraesCS7A01G005700	chr7A	95.238	63	3	0	4383	4445	3783005	3783067	3.130000e-17	100.0
10	TraesCS7A01G005700	chr4A	93.073	3479	213	13	980	4445	742036052	742032589	0.000000e+00	5064.0
11	TraesCS7A01G005700	chr4A	92.863	3475	220	16	980	4445	739630462	739627007	0.000000e+00	5018.0
12	TraesCS7A01G005700	chr4A	91.538	3486	224	22	980	4445	740541132	740537698	0.000000e+00	4737.0
13	TraesCS7A01G005700	chr4A	80.070	2579	433	48	1890	4442	740209447	740206924	0.000000e+00	1840.0
14	TraesCS7A01G005700	chr4A	96.734	643	21	0	983	1625	739844218	739843576	0.000000e+00	1072.0
15	TraesCS7A01G005700	chr4A	92.711	686	38	8	1	678	739845035	739844354	0.000000e+00	979.0
16	TraesCS7A01G005700	chr4A	92.128	686	43	7	1	678	740541960	740541278	0.000000e+00	957.0
17	TraesCS7A01G005700	chr4A	89.650	686	41	12	1	678	739631271	739630608	0.000000e+00	846.0
18	TraesCS7A01G005700	chr4A	93.860	456	21	3	4458	4913	742032541	742032093	0.000000e+00	680.0
19	TraesCS7A01G005700	chr4A	93.289	447	17	7	4472	4913	740537645	740537207	0.000000e+00	647.0
20	TraesCS7A01G005700	chr4A	92.308	455	27	5	229	678	742037096	742036645	1.490000e-179	640.0
21	TraesCS7A01G005700	chr4A	90.110	364	24	6	1	354	742123921	742123560	3.460000e-126	462.0
22	TraesCS7A01G005700	chr4A	77.791	815	135	29	980	1773	740219871	740219082	1.250000e-125	460.0
23	TraesCS7A01G005700	chr4A	90.616	341	22	4	1	333	739728684	739728346	1.250000e-120	444.0
24	TraesCS7A01G005700	chr4A	90.041	241	9	3	4458	4697	739626960	739626734	1.030000e-76	298.0
25	TraesCS7A01G005700	chr4A	93.717	191	10	2	4723	4913	739626740	739626552	8.050000e-73	285.0
26	TraesCS7A01G005700	chr4A	95.960	99	4	0	4535	4633	741177864	741177766	1.420000e-35	161.0
27	TraesCS7A01G005700	chr4A	88.060	134	12	1	4741	4870	741177374	741177241	6.580000e-34	156.0
28	TraesCS7A01G005700	chr4A	87.218	133	12	1	4735	4867	742251718	742251845	3.960000e-31	147.0
29	TraesCS7A01G005700	chr4A	98.333	60	1	0	703	762	739630609	739630550	6.730000e-19	106.0
30	TraesCS7A01G005700	chr4A	98.333	60	1	0	703	762	739844355	739844296	6.730000e-19	106.0
31	TraesCS7A01G005700	chr4A	98.333	60	1	0	703	762	740541279	740541220	6.730000e-19	106.0
32	TraesCS7A01G005700	chr4A	98.333	60	1	0	703	762	742036646	742036587	6.730000e-19	106.0
33	TraesCS7A01G005700	chr7D	86.573	3493	403	24	981	4445	3858739	3855285	0.000000e+00	3792.0
34	TraesCS7A01G005700	chr7D	86.760	3414	382	39	980	4360	2408356	2411732	0.000000e+00	3736.0
35	TraesCS7A01G005700	chr7D	87.165	2571	297	14	1899	4445	2651653	2654214	0.000000e+00	2889.0
36	TraesCS7A01G005700	chr7D	80.412	2624	425	55	1857	4442	3688296	3690868	0.000000e+00	1916.0
37	TraesCS7A01G005700	chr7D	94.066	455	16	4	4460	4905	3855235	3854783	0.000000e+00	680.0
38	TraesCS7A01G005700	chr7D	79.271	796	132	20	987	1773	3685928	3686699	4.360000e-145	525.0
39	TraesCS7A01G005700	chr7D	96.907	194	5	1	4718	4911	2654473	2654665	1.710000e-84	324.0
40	TraesCS7A01G005700	chr7D	92.857	196	9	4	4466	4658	2654264	2654457	3.740000e-71	279.0
41	TraesCS7A01G005700	chr7D	90.196	153	11	4	4	153	3859174	3859023	3.880000e-46	196.0
42	TraesCS7A01G005700	chr7D	97.895	95	2	0	4535	4629	2411920	2412014	1.090000e-36	165.0
43	TraesCS7A01G005700	chr7D	83.168	101	13	4	4535	4635	2437915	2438011	6.770000e-14	89.8
44	TraesCS7A01G005700	chrUn	89.504	686	42	12	1	678	444984626	444985289	0.000000e+00	841.0
45	TraesCS7A01G005700	chrUn	98.333	60	1	0	703	762	444985288	444985347	6.730000e-19	106.0
46	TraesCS7A01G005700	chr7B	88.235	136	15	1	4736	4870	708497846	708497711	1.420000e-35	161.0
47	TraesCS7A01G005700	chr5B	74.419	172	35	7	1607	1770	21696943	21696773	1.140000e-06	65.8
48	TraesCS7A01G005700	chr5A	85.714	63	7	2	571	631	473632536	473632474	1.140000e-06	65.8
49	TraesCS7A01G005700	chr6A	95.000	40	2	0	568	607	565476122	565476083	4.110000e-06	63.9
50	TraesCS7A01G005700	chr5D	74.233	163	36	5	1610	1770	29569690	29569532	4.110000e-06	63.9
51	TraesCS7A01G005700	chr6B	89.362	47	3	2	576	621	481466474	481466519	1.910000e-04	58.4
52	TraesCS7A01G005700	chr3A	90.698	43	3	1	576	617	260067209	260067167	6.870000e-04	56.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G005700	chr7A	2826359	2831271	4912	False	4336.50	7265	100.000000	1	4913	2	chr7A.!!$F2	4912
1	TraesCS7A01G005700	chr7A	2092509	2097493	4984	False	1829.50	5576	94.754500	1	4913	4	chr7A.!!$F1	4912
2	TraesCS7A01G005700	chr7A	3779574	3783455	3881	False	996.75	3027	87.021000	993	4734	4	chr7A.!!$F3	3741
3	TraesCS7A01G005700	chr4A	740206924	740209447	2523	True	1840.00	1840	80.070000	1890	4442	1	chr4A.!!$R2	2552
4	TraesCS7A01G005700	chr4A	742032093	742037096	5003	True	1622.50	5064	94.393500	229	4913	4	chr4A.!!$R9	4684
5	TraesCS7A01G005700	chr4A	740537207	740541960	4753	True	1611.75	4737	93.822000	1	4913	4	chr4A.!!$R7	4912
6	TraesCS7A01G005700	chr4A	739626552	739631271	4719	True	1310.60	5018	92.920800	1	4913	5	chr4A.!!$R5	4912
7	TraesCS7A01G005700	chr4A	739843576	739845035	1459	True	719.00	1072	95.926000	1	1625	3	chr4A.!!$R6	1624
8	TraesCS7A01G005700	chr4A	740219082	740219871	789	True	460.00	460	77.791000	980	1773	1	chr4A.!!$R3	793
9	TraesCS7A01G005700	chr7D	2408356	2412014	3658	False	1950.50	3736	92.327500	980	4629	2	chr7D.!!$F2	3649
10	TraesCS7A01G005700	chr7D	3854783	3859174	4391	True	1556.00	3792	90.278333	4	4905	3	chr7D.!!$R1	4901
11	TraesCS7A01G005700	chr7D	3685928	3690868	4940	False	1220.50	1916	79.841500	987	4442	2	chr7D.!!$F4	3455
12	TraesCS7A01G005700	chr7D	2651653	2654665	3012	False	1164.00	2889	92.309667	1899	4911	3	chr7D.!!$F3	3012
13	TraesCS7A01G005700	chrUn	444984626	444985347	721	False	473.50	841	93.918500	1	762	2	chrUn.!!$F1	761

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
53	54	0.598065	AAATTGGCAGGAACGCAGTC	59.402	50.000	0.00	0.00	45.00	3.51	F
59	60	1.215382	CAGGAACGCAGTCCATCGA	59.785	57.895	5.51	0.00	45.00	3.59	F
77	81	1.400242	CGAAGCAAGCCAAACTGCTAC	60.400	52.381	0.00	0.00	41.80	3.58	F
1538	1874	1.878088	CCATTCATCAGCTTCCATCGG	59.122	52.381	0.00	0.00	0.00	4.18	F
2065	3966	2.264480	CGACGGTCATTCAGCCCA	59.736	61.111	9.10	0.00	0.00	5.36	F
2647	4567	0.328926	TGGCATGATGCTGGAGTTCA	59.671	50.000	17.84	1.63	44.28	3.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1538	1874	0.804933	GTCGATACCCACAGGAACGC	60.805	60.0	0.00	0.00	36.73	4.84	R
2065	3966	5.491070	TGAGCTTCGGCATATATTTGCTAT	58.509	37.5	16.28	0.00	44.74	2.97	R
2082	3983	5.987098	ACATGATCACTAACAGATGAGCTT	58.013	37.5	0.00	0.00	32.43	3.74	R
2647	4567	0.320771	GACGTGGACTTGTGCAGGAT	60.321	55.0	18.72	6.04	0.00	3.24	R
3852	5773	0.761187	TTGCTGCTTCTGTCCACTCT	59.239	50.0	0.00	0.00	0.00	3.24	R
4229	6189	0.452784	CGTTTGCTCCGCTTAACAGC	60.453	55.0	0.00	0.00	43.41	4.40	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
29	30	7.701539	AGTGCATCCAATGTAACATTTTCTA	57.298	32.000	0.00	0.00	0.00	2.10
53	54	0.598065	AAATTGGCAGGAACGCAGTC	59.402	50.000	0.00	0.00	45.00	3.51
55	56	2.410322	ATTGGCAGGAACGCAGTCCA	62.410	55.000	5.51	0.00	45.00	4.02
56	57	2.045926	GGCAGGAACGCAGTCCAT	60.046	61.111	5.51	0.00	45.00	3.41
57	58	2.109126	GGCAGGAACGCAGTCCATC	61.109	63.158	5.51	0.00	45.00	3.51
58	59	2.456119	GCAGGAACGCAGTCCATCG	61.456	63.158	5.51	0.00	45.00	3.84
59	60	1.215382	CAGGAACGCAGTCCATCGA	59.785	57.895	5.51	0.00	45.00	3.59
77	81	1.400242	CGAAGCAAGCCAAACTGCTAC	60.400	52.381	0.00	0.00	41.80	3.58
155	159	8.587952	AAGTTTAAAAACCTATGAACATGTGC	57.412	30.769	0.00	0.00	39.71	4.57
234	238	4.063689	CCTCTAAGACGCCTTCGACTATA	58.936	47.826	0.00	0.00	39.58	1.31
253	257	9.191479	CGACTATATATATTTTCCTCACCTCCT	57.809	37.037	0.00	0.00	0.00	3.69
271	275	3.374764	TCCTAAGGTTGCATCTGAGCTA	58.625	45.455	0.00	0.00	34.99	3.32
379	383	5.048713	GGTTTACTACTGTGCTTTTGATGCT	60.049	40.000	0.00	0.00	0.00	3.79
386	390	3.225104	TGTGCTTTTGATGCTTTCCTCT	58.775	40.909	0.00	0.00	0.00	3.69
528	536	4.850859	TCAAGAAATAATGGCACGTACG	57.149	40.909	15.01	15.01	0.00	3.67
1197	1527	4.933563	TGCCGCAGCAGCAGTGAA	62.934	61.111	0.00	0.00	46.52	3.18
1198	1528	4.099170	GCCGCAGCAGCAGTGAAG	62.099	66.667	0.82	0.00	42.27	3.02
1467	1803	4.868026	CCAAGGTGGTCGTTGTCA	57.132	55.556	0.00	0.00	37.63	3.58
1538	1874	1.878088	CCATTCATCAGCTTCCATCGG	59.122	52.381	0.00	0.00	0.00	4.18
1887	3787	5.316987	TCAGTTTCCCATCTCTTTTTCTCC	58.683	41.667	0.00	0.00	0.00	3.71
2065	3966	2.264480	CGACGGTCATTCAGCCCA	59.736	61.111	9.10	0.00	0.00	5.36
2183	4084	3.403038	CTTTCCAAGACGATGAACCACT	58.597	45.455	0.00	0.00	0.00	4.00
2647	4567	0.328926	TGGCATGATGCTGGAGTTCA	59.671	50.000	17.84	1.63	44.28	3.18
2663	4583	1.537202	GTTCATCCTGCACAAGTCCAC	59.463	52.381	0.00	0.00	0.00	4.02
2907	4827	2.570135	GAGGATGGCCATCTCAAGTTC	58.430	52.381	37.94	22.93	37.92	3.01
2928	4848	6.430925	AGTTCATATGCAGAAAACTGTTGCTA	59.569	34.615	10.59	0.00	38.60	3.49
3161	5081	3.567164	ACTTGGTTGTCAATGAAGAGCAG	59.433	43.478	11.54	0.00	34.45	4.24
3380	5300	3.808728	TCTCACTCAGTTTTGAAGGTGG	58.191	45.455	0.00	0.00	32.95	4.61
3568	5488	1.871772	CAAGACTTCCTTGCTGCCG	59.128	57.895	0.00	0.00	44.90	5.69
3654	5575	9.436957	GTCATCACAAAAGGTATTCTTAAGAGA	57.563	33.333	5.12	0.00	34.78	3.10
3774	5695	6.349611	GCAAAGATCTTGTTGCCTCTATTTCA	60.350	38.462	17.76	0.00	43.49	2.69
3852	5773	3.815809	AGTGGGAGATGAAACGAAACAA	58.184	40.909	0.00	0.00	0.00	2.83
3955	5876	5.567534	GGTAATGAATTGTGTTGTACTTGCG	59.432	40.000	0.00	0.00	0.00	4.85
3971	5893	1.171549	TGCGTTGCAATGAGCTTCCA	61.172	50.000	22.81	6.57	45.94	3.53
3975	5897	1.068055	GTTGCAATGAGCTTCCACCTG	60.068	52.381	0.59	0.00	45.94	4.00
4049	5989	0.824109	TACAGGCTGCGACTTGCTAT	59.176	50.000	15.89	0.00	46.63	2.97
4190	6145	4.445052	TCGTACTTTTATGTTGTGTCACCG	59.555	41.667	0.00	0.00	0.00	4.94
4282	6247	3.535561	AGAAATATGGTGACTTCCTGCG	58.464	45.455	0.00	0.00	0.00	5.18
4329	6295	5.595885	TGTTGTTGGACATGTATTTGGTTG	58.404	37.500	0.00	0.00	0.00	3.77
4365	6332	5.010617	GTCAACTTAATTGGCTTCTTGGGAA	59.989	40.000	0.00	0.00	40.00	3.97
4445	6649	7.870509	TCTGGAATCTTGATTTACTTGATGG	57.129	36.000	0.00	0.00	0.00	3.51
4446	6650	7.405292	TCTGGAATCTTGATTTACTTGATGGT	58.595	34.615	0.00	0.00	0.00	3.55
4447	6651	8.548025	TCTGGAATCTTGATTTACTTGATGGTA	58.452	33.333	0.00	0.00	0.00	3.25
4487	6729	7.617329	TGATGGTATAGATATGTAGCTGAGCTT	59.383	37.037	14.14	0.00	40.44	3.74
4650	6958	2.087646	GGCCTGACAGACAATCTTTCC	58.912	52.381	3.32	0.00	0.00	3.13

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
29	30	2.036992	TGCGTTCCTGCCAATTTGAAAT	59.963	40.909	0.00	0.00	0.00	2.17
53	54	0.883833	AGTTTGGCTTGCTTCGATGG	59.116	50.000	0.00	0.00	0.00	3.51
55	56	0.242017	GCAGTTTGGCTTGCTTCGAT	59.758	50.000	0.00	0.00	0.00	3.59
56	57	0.819259	AGCAGTTTGGCTTGCTTCGA	60.819	50.000	0.00	0.00	42.71	3.71
57	58	0.874390	TAGCAGTTTGGCTTGCTTCG	59.126	50.000	4.17	0.00	42.71	3.79
58	59	1.400242	CGTAGCAGTTTGGCTTGCTTC	60.400	52.381	4.17	0.00	42.71	3.86
59	60	0.593128	CGTAGCAGTTTGGCTTGCTT	59.407	50.000	4.17	0.00	42.71	3.91
77	81	7.201496	CCAAGCAGTACCTGTATTAGTTTAACG	60.201	40.741	0.00	0.00	33.43	3.18
155	159	0.531532	ATCTCGATCCAAAGCTGCCG	60.532	55.000	0.00	0.00	0.00	5.69
253	257	3.745480	GCCATAGCTCAGATGCAACCTTA	60.745	47.826	0.00	0.00	35.50	2.69
271	275	4.747931	GCCAGTAGACATCCAATTAGCCAT	60.748	45.833	0.00	0.00	0.00	4.40
379	383	6.248569	ACTTTAACTCAACCTCAGAGGAAA	57.751	37.500	24.45	9.94	37.67	3.13
442	450	8.846943	TGCTAGAAAATCACACAGAATAGAAA	57.153	30.769	0.00	0.00	0.00	2.52
511	519	5.591643	ATGATCGTACGTGCCATTATTTC	57.408	39.130	16.05	0.00	0.00	2.17
1196	1526	1.019278	CCACACCGTATGCGCTTCTT	61.019	55.000	9.73	0.00	36.67	2.52
1197	1527	1.447838	CCACACCGTATGCGCTTCT	60.448	57.895	9.73	0.00	36.67	2.85
1198	1528	0.810031	ATCCACACCGTATGCGCTTC	60.810	55.000	9.73	0.00	36.67	3.86
1368	1704	2.693591	TCTATTCTTCAGCGTCCGGATT	59.306	45.455	7.81	0.00	0.00	3.01
1467	1803	1.138459	CGCGTCTGTCTGCTCAGAT	59.862	57.895	0.00	0.00	44.59	2.90
1538	1874	0.804933	GTCGATACCCACAGGAACGC	60.805	60.000	0.00	0.00	36.73	4.84
2065	3966	5.491070	TGAGCTTCGGCATATATTTGCTAT	58.509	37.500	16.28	0.00	44.74	2.97
2082	3983	5.987098	ACATGATCACTAACAGATGAGCTT	58.013	37.500	0.00	0.00	32.43	3.74
2183	4084	0.393402	GAGGTCATCCACATGCTGCA	60.393	55.000	4.13	4.13	35.89	4.41
2516	4433	2.880890	GGGGCATCAACATCACTACATC	59.119	50.000	0.00	0.00	0.00	3.06
2594	4511	1.616865	TCTTCACCTCTGTGTTACCGG	59.383	52.381	0.00	0.00	43.26	5.28
2647	4567	0.320771	GACGTGGACTTGTGCAGGAT	60.321	55.000	18.72	6.04	0.00	3.24
3161	5081	1.909700	TCCTGCCAGTGTTTCCAATC	58.090	50.000	0.00	0.00	0.00	2.67
3380	5300	0.883833	CAGCATGTCTTGGGTCAACC	59.116	55.000	0.00	0.00	40.81	3.77
3568	5488	3.747976	GCCGGGCACATTGTCCAC	61.748	66.667	15.62	0.00	43.88	4.02
3654	5575	1.480954	ACGATTGATAGGCGTCCAAGT	59.519	47.619	0.00	0.00	31.98	3.16
3774	5695	2.842462	TGGACCAGTGACGTGCCT	60.842	61.111	0.00	0.00	0.00	4.75
3852	5773	0.761187	TTGCTGCTTCTGTCCACTCT	59.239	50.000	0.00	0.00	0.00	3.24
3955	5876	1.068055	CAGGTGGAAGCTCATTGCAAC	60.068	52.381	0.00	0.00	44.61	4.17
3971	5893	2.564947	GTGAACTGTGGAGAGATCAGGT	59.435	50.000	0.00	0.00	34.02	4.00
3975	5897	3.450457	AGGATGTGAACTGTGGAGAGATC	59.550	47.826	0.00	0.00	0.00	2.75
4049	5989	4.397103	CAGCATAAGAGAATTCTGTGCCAA	59.603	41.667	14.00	0.00	42.42	4.52
4058	5998	7.340232	TCAACCAATAAGCAGCATAAGAGAATT	59.660	33.333	0.00	0.00	0.00	2.17
4165	6120	5.360296	GTGACACAACATAAAAGTACGACG	58.640	41.667	0.00	0.00	0.00	5.12
4166	6121	5.610982	CGGTGACACAACATAAAAGTACGAC	60.611	44.000	8.08	0.00	0.00	4.34
4229	6189	0.452784	CGTTTGCTCCGCTTAACAGC	60.453	55.000	0.00	0.00	43.41	4.40
4329	6295	7.368059	CCAATTAAGTTGACTAGGACCAAAAC	58.632	38.462	0.00	0.00	40.37	2.43
4386	6353	9.871238	CAAACAAGTACTAGGATATTGTAGTGT	57.129	33.333	8.49	0.00	33.17	3.55
4447	6651	9.800572	ATCTATACCATCAGCGTACATATCTAT	57.199	33.333	0.00	0.00	0.00	1.98
4451	6690	9.355916	ACATATCTATACCATCAGCGTACATAT	57.644	33.333	0.00	0.00	0.00	1.78
4453	6692	7.646548	ACATATCTATACCATCAGCGTACAT	57.353	36.000	0.00	0.00	0.00	2.29
4456	6695	7.012421	CAGCTACATATCTATACCATCAGCGTA	59.988	40.741	0.00	0.00	0.00	4.42
4487	6729	6.181908	GTCTCCTCTTCTAGGTAAGTCTCAA	58.818	44.000	0.00	0.00	46.62	3.02
4697	7010	0.909623	AAGTACCAGCCGGCATTAGT	59.090	50.000	31.54	21.25	34.57	2.24
4833	7150	3.181484	GCAGCAATGACAGCCATCAAATA	60.181	43.478	0.00	0.00	33.53	1.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.