Multiple sequence alignment - TraesCS7A01G005400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G005400 chr7A 100.000 3890 0 0 1 3890 2762192 2766081 0.000000e+00 7184.0
1 TraesCS7A01G005400 chr7A 99.137 1275 9 2 381 1655 2741802 2743074 0.000000e+00 2292.0
2 TraesCS7A01G005400 chr7A 83.424 923 143 9 1646 2563 2763981 2764898 0.000000e+00 848.0
3 TraesCS7A01G005400 chr7A 80.528 1022 180 17 1711 2722 2662447 2661435 0.000000e+00 767.0
4 TraesCS7A01G005400 chr7A 80.664 874 158 11 1855 2722 2662447 2661579 0.000000e+00 667.0
5 TraesCS7A01G005400 chr7A 78.006 1073 225 10 1656 2722 2662934 2661867 0.000000e+00 664.0
6 TraesCS7A01G005400 chr7A 78.764 1003 202 11 1726 2722 2662720 2661723 0.000000e+00 662.0
7 TraesCS7A01G005400 chr7A 79.723 794 151 10 1646 2434 2764125 2764913 2.030000e-157 566.0
8 TraesCS7A01G005400 chr7A 80.274 730 132 11 923 1649 3029393 3030113 1.230000e-149 540.0
9 TraesCS7A01G005400 chr7A 74.717 1060 237 25 1646 2690 2743282 2744325 9.920000e-121 444.0
10 TraesCS7A01G005400 chr7A 90.991 222 19 1 2720 2941 2940935 2941155 8.170000e-77 298.0
11 TraesCS7A01G005400 chr7A 83.540 322 38 10 2720 3029 2661234 2660916 1.770000e-73 287.0
12 TraesCS7A01G005400 chr7A 88.024 167 17 3 486 652 2605943 2605780 1.100000e-45 195.0
13 TraesCS7A01G005400 chr7A 93.443 122 8 0 680 801 2605789 2605668 8.590000e-42 182.0
14 TraesCS7A01G005400 chr7A 90.991 111 10 0 542 652 2664463 2664353 2.420000e-32 150.0
15 TraesCS7A01G005400 chr7A 81.714 175 31 1 2720 2894 3030896 3031069 1.130000e-30 145.0
16 TraesCS7A01G005400 chr7A 91.765 85 7 0 501 585 2939339 2939423 6.830000e-23 119.0
17 TraesCS7A01G005400 chr7A 88.889 81 6 1 680 757 2939460 2939540 3.200000e-16 97.1
18 TraesCS7A01G005400 chr4A 83.841 984 122 17 680 1649 742074408 742075368 0.000000e+00 902.0
19 TraesCS7A01G005400 chr4A 83.638 984 124 15 680 1649 739680420 739681380 0.000000e+00 891.0
20 TraesCS7A01G005400 chr4A 83.182 993 135 22 680 1663 741780942 741779973 0.000000e+00 880.0
21 TraesCS7A01G005400 chr4A 80.556 1008 146 27 680 1663 740604811 740603830 0.000000e+00 730.0
22 TraesCS7A01G005400 chr4A 80.914 985 133 22 681 1649 741045121 741046066 0.000000e+00 726.0
23 TraesCS7A01G005400 chr4A 83.884 757 112 7 910 1658 740156317 740157071 0.000000e+00 713.0
24 TraesCS7A01G005400 chr4A 78.931 992 195 11 1723 2707 739999562 739998578 0.000000e+00 662.0
25 TraesCS7A01G005400 chr4A 84.738 439 46 11 2514 2940 526608759 526609188 1.670000e-113 420.0
26 TraesCS7A01G005400 chr4A 87.382 317 25 5 2724 3029 740158136 740158448 2.220000e-92 350.0
27 TraesCS7A01G005400 chr4A 86.786 280 13 11 3627 3890 739683611 739683882 1.370000e-74 291.0
28 TraesCS7A01G005400 chr4A 86.219 283 12 15 3627 3890 742077590 742077864 8.230000e-72 281.0
29 TraesCS7A01G005400 chr4A 81.124 249 22 15 3236 3460 741046982 741047229 3.990000e-40 176.0
30 TraesCS7A01G005400 chr4A 80.723 249 23 14 3236 3460 739998108 739997861 1.860000e-38 171.0
31 TraesCS7A01G005400 chr4A 91.228 114 10 0 533 646 740000238 740000125 5.200000e-34 156.0
32 TraesCS7A01G005400 chr4A 89.831 118 12 0 533 650 739680310 739680427 6.730000e-33 152.0
33 TraesCS7A01G005400 chr4A 89.831 118 12 0 533 650 742074298 742074415 6.730000e-33 152.0
34 TraesCS7A01G005400 chr4A 74.493 345 72 12 1100 1442 739905791 739906121 6.780000e-28 135.0
35 TraesCS7A01G005400 chr4A 90.909 99 9 0 3261 3359 740602057 740601959 2.440000e-27 134.0
36 TraesCS7A01G005400 chr4A 91.304 92 8 0 533 624 741781296 741781205 4.080000e-25 126.0
37 TraesCS7A01G005400 chr4A 73.913 345 72 13 1101 1442 733872383 733872054 5.280000e-24 122.0
38 TraesCS7A01G005400 chr4A 97.619 42 1 0 2939 2980 526609203 526609244 5.390000e-09 73.1
39 TraesCS7A01G005400 chr6A 86.453 812 89 12 2147 2946 115620197 115619395 0.000000e+00 870.0
40 TraesCS7A01G005400 chr6A 85.468 812 97 11 2147 2946 115621075 115620273 0.000000e+00 826.0
41 TraesCS7A01G005400 chr6A 81.481 81 11 4 441 519 573145610 573145688 3.240000e-06 63.9
42 TraesCS7A01G005400 chr6A 80.682 88 6 4 446 524 430337002 430337087 1.510000e-04 58.4
43 TraesCS7A01G005400 chr1A 85.363 813 95 14 2147 2946 578093261 578092460 0.000000e+00 821.0
44 TraesCS7A01G005400 chr1A 93.333 45 3 0 2939 2983 578092451 578092407 2.510000e-07 67.6
45 TraesCS7A01G005400 chr1A 100.000 32 0 0 444 475 576535177 576535146 4.200000e-05 60.2
46 TraesCS7A01G005400 chr7D 81.712 771 114 13 913 1663 2885445 2884682 5.520000e-173 617.0
47 TraesCS7A01G005400 chr7D 77.878 999 200 20 1711 2699 3218242 3217255 5.560000e-168 601.0
48 TraesCS7A01G005400 chr7D 77.701 870 171 21 1855 2713 3218242 3217385 9.640000e-141 510.0
49 TraesCS7A01G005400 chr7D 91.288 264 15 5 3632 3890 3214253 3213993 1.720000e-93 353.0
50 TraesCS7A01G005400 chr7D 80.586 273 49 4 1711 1981 3233476 3233206 1.420000e-49 207.0
51 TraesCS7A01G005400 chr7D 92.063 126 10 0 533 658 2885735 2885610 1.110000e-40 178.0
52 TraesCS7A01G005400 chr7D 78.462 260 19 13 3236 3460 2882475 2882218 6.780000e-28 135.0
53 TraesCS7A01G005400 chr7D 94.231 52 3 0 3407 3458 3214833 3214782 3.220000e-11 80.5
54 TraesCS7A01G005400 chrUn 80.586 273 49 4 1711 1981 347565428 347565158 1.420000e-49 207.0
55 TraesCS7A01G005400 chr2B 97.143 35 1 0 441 475 236109999 236110033 4.200000e-05 60.2
56 TraesCS7A01G005400 chr1D 94.286 35 2 0 441 475 257409439 257409473 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G005400 chr7A 2762192 2766081 3889 False 2866.000000 7184 87.715667 1 3890 3 chr7A.!!$F2 3889
1 TraesCS7A01G005400 chr7A 2741802 2744325 2523 False 1368.000000 2292 86.927000 381 2690 2 chr7A.!!$F1 2309
2 TraesCS7A01G005400 chr7A 2660916 2664463 3547 True 532.833333 767 82.082167 542 3029 6 chr7A.!!$R2 2487
3 TraesCS7A01G005400 chr7A 3029393 3031069 1676 False 342.500000 540 80.994000 923 2894 2 chr7A.!!$F4 1971
4 TraesCS7A01G005400 chr4A 740156317 740158448 2131 False 531.500000 713 85.633000 910 3029 2 chr4A.!!$F4 2119
5 TraesCS7A01G005400 chr4A 741779973 741781296 1323 True 503.000000 880 87.243000 533 1663 2 chr4A.!!$R4 1130
6 TraesCS7A01G005400 chr4A 741045121 741047229 2108 False 451.000000 726 81.019000 681 3460 2 chr4A.!!$F5 2779
7 TraesCS7A01G005400 chr4A 742074298 742077864 3566 False 445.000000 902 86.630333 533 3890 3 chr4A.!!$F6 3357
8 TraesCS7A01G005400 chr4A 739680310 739683882 3572 False 444.666667 891 86.751667 533 3890 3 chr4A.!!$F3 3357
9 TraesCS7A01G005400 chr4A 740601959 740604811 2852 True 432.000000 730 85.732500 680 3359 2 chr4A.!!$R3 2679
10 TraesCS7A01G005400 chr4A 739997861 740000238 2377 True 329.666667 662 83.627333 533 3460 3 chr4A.!!$R2 2927
11 TraesCS7A01G005400 chr6A 115619395 115621075 1680 True 848.000000 870 85.960500 2147 2946 2 chr6A.!!$R1 799
12 TraesCS7A01G005400 chr1A 578092407 578093261 854 True 444.300000 821 89.348000 2147 2983 2 chr1A.!!$R2 836
13 TraesCS7A01G005400 chr7D 3213993 3218242 4249 True 386.125000 601 85.274500 1711 3890 4 chr7D.!!$R3 2179
14 TraesCS7A01G005400 chr7D 2882218 2885735 3517 True 310.000000 617 84.079000 533 3460 3 chr7D.!!$R2 2927

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.179006 GGAGGATGGATGGTTCTGCC 60.179 60.0 0.00 0.0 37.9 4.85 F
94 95 0.179108 GGCGGCAGAGTTCGAGTAAT 60.179 55.0 3.07 0.0 0.0 1.89 F
334 335 0.535102 AGCTCCCACACCAAAGAACG 60.535 55.0 0.00 0.0 0.0 3.95 F
356 357 0.684535 TCCCAAACTGACGATGCAGA 59.315 50.0 10.65 0.0 39.2 4.26 F
2173 4868 0.617249 TGGTCCCATCCCAAATTGCC 60.617 55.0 0.00 0.0 0.0 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1924 2525 1.989706 TGCCCAGAAAGTTGGTTACC 58.010 50.000 0.0 0.0 36.45 2.85 R
1986 2588 2.210116 AGTGTGTTGTACCAAAGCGAG 58.790 47.619 0.0 0.0 0.00 5.03 R
2146 2748 0.107165 GGGATGGGACCAGTTAGTGC 60.107 60.000 0.0 0.0 0.00 4.40 R
2276 5115 0.941542 TAGTGTGTTGTCGCAAAGCC 59.058 50.000 0.0 0.0 35.78 4.35 R
3076 7867 0.039764 TGGAGTCGTCAGAGATGGGT 59.960 55.000 0.0 0.0 0.00 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.521995 ATTGACTGACGTGGCAGAG 57.478 52.632 10.26 0.00 39.20 3.35
19 20 0.681733 ATTGACTGACGTGGCAGAGT 59.318 50.000 10.26 0.00 39.20 3.24
21 22 0.881796 TGACTGACGTGGCAGAGTAG 59.118 55.000 10.26 0.00 39.20 2.57
23 24 1.131504 GACTGACGTGGCAGAGTAGAG 59.868 57.143 10.26 0.00 39.20 2.43
24 25 0.453793 CTGACGTGGCAGAGTAGAGG 59.546 60.000 0.00 0.00 38.14 3.69
26 27 0.736053 GACGTGGCAGAGTAGAGGAG 59.264 60.000 0.00 0.00 0.00 3.69
27 28 0.681564 ACGTGGCAGAGTAGAGGAGG 60.682 60.000 0.00 0.00 0.00 4.30
28 29 0.394488 CGTGGCAGAGTAGAGGAGGA 60.394 60.000 0.00 0.00 0.00 3.71
29 30 1.752436 CGTGGCAGAGTAGAGGAGGAT 60.752 57.143 0.00 0.00 0.00 3.24
33 34 2.492567 GGCAGAGTAGAGGAGGATGGAT 60.493 54.545 0.00 0.00 0.00 3.41
34 35 2.562298 GCAGAGTAGAGGAGGATGGATG 59.438 54.545 0.00 0.00 0.00 3.51
35 36 3.164268 CAGAGTAGAGGAGGATGGATGG 58.836 54.545 0.00 0.00 0.00 3.51
38 39 3.576550 GAGTAGAGGAGGATGGATGGTTC 59.423 52.174 0.00 0.00 0.00 3.62
39 40 2.885388 AGAGGAGGATGGATGGTTCT 57.115 50.000 0.00 0.00 0.00 3.01
40 41 2.406559 AGAGGAGGATGGATGGTTCTG 58.593 52.381 0.00 0.00 0.00 3.02
42 43 0.179006 GGAGGATGGATGGTTCTGCC 60.179 60.000 0.00 0.00 37.90 4.85
84 85 4.504916 CTGGTCTCGGCGGCAGAG 62.505 72.222 21.84 21.84 37.09 3.35
86 87 4.070552 GGTCTCGGCGGCAGAGTT 62.071 66.667 25.50 0.00 37.07 3.01
87 88 2.507324 GTCTCGGCGGCAGAGTTC 60.507 66.667 25.50 17.26 37.07 3.01
88 89 4.116328 TCTCGGCGGCAGAGTTCG 62.116 66.667 25.50 8.68 37.07 3.95
89 90 4.116328 CTCGGCGGCAGAGTTCGA 62.116 66.667 20.00 8.98 0.00 3.71
90 91 4.116328 TCGGCGGCAGAGTTCGAG 62.116 66.667 10.53 0.00 0.00 4.04
91 92 4.421479 CGGCGGCAGAGTTCGAGT 62.421 66.667 10.53 0.00 0.00 4.18
92 93 2.882876 GGCGGCAGAGTTCGAGTA 59.117 61.111 3.07 0.00 0.00 2.59
93 94 1.214589 GGCGGCAGAGTTCGAGTAA 59.785 57.895 3.07 0.00 0.00 2.24
94 95 0.179108 GGCGGCAGAGTTCGAGTAAT 60.179 55.000 3.07 0.00 0.00 1.89
95 96 0.924090 GCGGCAGAGTTCGAGTAATG 59.076 55.000 0.00 0.00 0.00 1.90
96 97 1.560923 CGGCAGAGTTCGAGTAATGG 58.439 55.000 0.00 0.00 0.00 3.16
97 98 1.291132 GGCAGAGTTCGAGTAATGGC 58.709 55.000 1.67 1.67 0.00 4.40
98 99 1.134670 GGCAGAGTTCGAGTAATGGCT 60.135 52.381 8.44 0.00 0.00 4.75
100 101 2.815478 CAGAGTTCGAGTAATGGCTCC 58.185 52.381 0.00 0.00 32.11 4.70
102 103 3.034635 AGAGTTCGAGTAATGGCTCCAT 58.965 45.455 0.00 0.00 38.46 3.41
103 104 3.068873 AGAGTTCGAGTAATGGCTCCATC 59.931 47.826 1.31 0.00 35.31 3.51
104 105 2.766263 AGTTCGAGTAATGGCTCCATCA 59.234 45.455 1.31 0.00 35.31 3.07
105 106 2.866762 GTTCGAGTAATGGCTCCATCAC 59.133 50.000 1.31 0.00 35.31 3.06
106 107 1.067060 TCGAGTAATGGCTCCATCACG 59.933 52.381 1.31 6.33 35.31 4.35
110 111 2.101582 AGTAATGGCTCCATCACGTCTC 59.898 50.000 1.31 0.00 35.31 3.36
112 113 1.323271 ATGGCTCCATCACGTCTCGT 61.323 55.000 0.00 0.00 42.36 4.18
113 114 1.215647 GGCTCCATCACGTCTCGTT 59.784 57.895 0.00 0.00 38.32 3.85
115 116 1.534175 GGCTCCATCACGTCTCGTTAG 60.534 57.143 0.00 0.00 38.32 2.34
116 117 1.132643 GCTCCATCACGTCTCGTTAGT 59.867 52.381 0.00 0.00 38.32 2.24
119 120 3.571571 TCCATCACGTCTCGTTAGTTTG 58.428 45.455 0.00 0.00 38.32 2.93
120 121 2.092211 CCATCACGTCTCGTTAGTTTGC 59.908 50.000 0.00 0.00 38.32 3.68
122 123 3.021269 TCACGTCTCGTTAGTTTGCAT 57.979 42.857 0.00 0.00 38.32 3.96
124 125 2.475111 CACGTCTCGTTAGTTTGCATGT 59.525 45.455 0.00 0.00 38.32 3.21
125 126 2.729882 ACGTCTCGTTAGTTTGCATGTC 59.270 45.455 0.00 0.00 36.35 3.06
126 127 2.222289 CGTCTCGTTAGTTTGCATGTCG 60.222 50.000 0.00 0.00 0.00 4.35
127 128 2.984471 GTCTCGTTAGTTTGCATGTCGA 59.016 45.455 0.00 0.00 0.00 4.20
128 129 3.427528 GTCTCGTTAGTTTGCATGTCGAA 59.572 43.478 0.00 0.00 0.00 3.71
130 131 3.386486 TCGTTAGTTTGCATGTCGAAGT 58.614 40.909 0.00 0.00 0.00 3.01
131 132 4.548494 TCGTTAGTTTGCATGTCGAAGTA 58.452 39.130 0.00 0.00 0.00 2.24
132 133 5.165676 TCGTTAGTTTGCATGTCGAAGTAT 58.834 37.500 0.00 0.00 0.00 2.12
133 134 5.061684 TCGTTAGTTTGCATGTCGAAGTATG 59.938 40.000 0.00 0.00 0.00 2.39
134 135 5.061684 CGTTAGTTTGCATGTCGAAGTATGA 59.938 40.000 9.10 0.00 0.00 2.15
137 138 5.178061 AGTTTGCATGTCGAAGTATGATGA 58.822 37.500 9.10 0.00 0.00 2.92
138 139 5.292834 AGTTTGCATGTCGAAGTATGATGAG 59.707 40.000 9.10 0.00 0.00 2.90
139 140 4.391405 TGCATGTCGAAGTATGATGAGT 57.609 40.909 9.10 0.00 0.00 3.41
140 141 5.514274 TGCATGTCGAAGTATGATGAGTA 57.486 39.130 9.10 0.00 0.00 2.59
141 142 6.089249 TGCATGTCGAAGTATGATGAGTAT 57.911 37.500 9.10 0.00 0.00 2.12
142 143 6.515832 TGCATGTCGAAGTATGATGAGTATT 58.484 36.000 9.10 0.00 0.00 1.89
143 144 6.986231 TGCATGTCGAAGTATGATGAGTATTT 59.014 34.615 9.10 0.00 0.00 1.40
144 145 7.495606 TGCATGTCGAAGTATGATGAGTATTTT 59.504 33.333 9.10 0.00 0.00 1.82
145 146 7.795734 GCATGTCGAAGTATGATGAGTATTTTG 59.204 37.037 9.10 0.00 0.00 2.44
146 147 8.820933 CATGTCGAAGTATGATGAGTATTTTGT 58.179 33.333 0.00 0.00 0.00 2.83
147 148 8.771920 TGTCGAAGTATGATGAGTATTTTGTT 57.228 30.769 0.00 0.00 0.00 2.83
149 150 9.478019 GTCGAAGTATGATGAGTATTTTGTTTG 57.522 33.333 0.00 0.00 0.00 2.93
150 151 8.175069 TCGAAGTATGATGAGTATTTTGTTTGC 58.825 33.333 0.00 0.00 0.00 3.68
151 152 8.177663 CGAAGTATGATGAGTATTTTGTTTGCT 58.822 33.333 0.00 0.00 0.00 3.91
152 153 9.846248 GAAGTATGATGAGTATTTTGTTTGCTT 57.154 29.630 0.00 0.00 0.00 3.91
153 154 9.846248 AAGTATGATGAGTATTTTGTTTGCTTC 57.154 29.630 0.00 0.00 0.00 3.86
154 155 8.177663 AGTATGATGAGTATTTTGTTTGCTTCG 58.822 33.333 0.00 0.00 0.00 3.79
155 156 6.312399 TGATGAGTATTTTGTTTGCTTCGT 57.688 33.333 0.00 0.00 0.00 3.85
156 157 6.142139 TGATGAGTATTTTGTTTGCTTCGTG 58.858 36.000 0.00 0.00 0.00 4.35
157 158 5.493133 TGAGTATTTTGTTTGCTTCGTGT 57.507 34.783 0.00 0.00 0.00 4.49
158 159 5.270083 TGAGTATTTTGTTTGCTTCGTGTG 58.730 37.500 0.00 0.00 0.00 3.82
159 160 5.065346 TGAGTATTTTGTTTGCTTCGTGTGA 59.935 36.000 0.00 0.00 0.00 3.58
160 161 6.072112 AGTATTTTGTTTGCTTCGTGTGAT 57.928 33.333 0.00 0.00 0.00 3.06
161 162 7.041712 TGAGTATTTTGTTTGCTTCGTGTGATA 60.042 33.333 0.00 0.00 0.00 2.15
162 163 7.816640 AGTATTTTGTTTGCTTCGTGTGATAT 58.183 30.769 0.00 0.00 0.00 1.63
163 164 6.932901 ATTTTGTTTGCTTCGTGTGATATG 57.067 33.333 0.00 0.00 0.00 1.78
164 165 5.681337 TTTGTTTGCTTCGTGTGATATGA 57.319 34.783 0.00 0.00 0.00 2.15
165 166 4.661993 TGTTTGCTTCGTGTGATATGAC 57.338 40.909 0.00 0.00 0.00 3.06
166 167 4.314961 TGTTTGCTTCGTGTGATATGACT 58.685 39.130 0.00 0.00 0.00 3.41
167 168 5.474825 TGTTTGCTTCGTGTGATATGACTA 58.525 37.500 0.00 0.00 0.00 2.59
168 169 6.106003 TGTTTGCTTCGTGTGATATGACTAT 58.894 36.000 0.00 0.00 0.00 2.12
169 170 6.593770 TGTTTGCTTCGTGTGATATGACTATT 59.406 34.615 0.00 0.00 0.00 1.73
170 171 7.119116 TGTTTGCTTCGTGTGATATGACTATTT 59.881 33.333 0.00 0.00 0.00 1.40
171 172 7.609760 TTGCTTCGTGTGATATGACTATTTT 57.390 32.000 0.00 0.00 0.00 1.82
172 173 7.234187 TGCTTCGTGTGATATGACTATTTTC 57.766 36.000 0.00 0.00 0.00 2.29
173 174 6.816140 TGCTTCGTGTGATATGACTATTTTCA 59.184 34.615 0.00 0.00 0.00 2.69
174 175 7.119997 GCTTCGTGTGATATGACTATTTTCAC 58.880 38.462 0.00 0.00 0.00 3.18
175 176 7.534085 TTCGTGTGATATGACTATTTTCACC 57.466 36.000 0.00 0.00 0.00 4.02
176 177 6.873997 TCGTGTGATATGACTATTTTCACCT 58.126 36.000 0.00 0.00 0.00 4.00
177 178 8.002984 TCGTGTGATATGACTATTTTCACCTA 57.997 34.615 0.00 0.00 0.00 3.08
178 179 8.638873 TCGTGTGATATGACTATTTTCACCTAT 58.361 33.333 0.00 0.00 0.00 2.57
179 180 9.261180 CGTGTGATATGACTATTTTCACCTATT 57.739 33.333 0.00 0.00 0.00 1.73
209 210 8.311836 TCCTTATAGGATTCGATTGTTCATACC 58.688 37.037 0.00 0.00 40.06 2.73
210 211 7.549488 CCTTATAGGATTCGATTGTTCATACCC 59.451 40.741 0.00 0.00 37.67 3.69
211 212 4.086706 AGGATTCGATTGTTCATACCCC 57.913 45.455 0.00 0.00 0.00 4.95
212 213 3.716872 AGGATTCGATTGTTCATACCCCT 59.283 43.478 0.00 0.00 0.00 4.79
213 214 3.815401 GGATTCGATTGTTCATACCCCTG 59.185 47.826 0.00 0.00 0.00 4.45
214 215 3.992943 TTCGATTGTTCATACCCCTGT 57.007 42.857 0.00 0.00 0.00 4.00
215 216 5.454187 GGATTCGATTGTTCATACCCCTGTA 60.454 44.000 0.00 0.00 0.00 2.74
216 217 4.395959 TCGATTGTTCATACCCCTGTAC 57.604 45.455 0.00 0.00 0.00 2.90
217 218 3.770388 TCGATTGTTCATACCCCTGTACA 59.230 43.478 0.00 0.00 0.00 2.90
218 219 4.119862 CGATTGTTCATACCCCTGTACAG 58.880 47.826 16.34 16.34 29.75 2.74
219 220 4.142026 CGATTGTTCATACCCCTGTACAGA 60.142 45.833 24.68 4.30 29.75 3.41
220 221 5.625886 CGATTGTTCATACCCCTGTACAGAA 60.626 44.000 24.68 5.91 29.75 3.02
221 222 4.819105 TGTTCATACCCCTGTACAGAAG 57.181 45.455 24.68 16.29 29.84 2.85
222 223 4.422057 TGTTCATACCCCTGTACAGAAGA 58.578 43.478 24.68 9.17 29.84 2.87
223 224 4.466370 TGTTCATACCCCTGTACAGAAGAG 59.534 45.833 24.68 11.45 29.84 2.85
224 225 4.603094 TCATACCCCTGTACAGAAGAGA 57.397 45.455 24.68 10.82 0.00 3.10
225 226 4.537751 TCATACCCCTGTACAGAAGAGAG 58.462 47.826 24.68 9.76 0.00 3.20
226 227 4.229812 TCATACCCCTGTACAGAAGAGAGA 59.770 45.833 24.68 11.82 0.00 3.10
227 228 3.544698 ACCCCTGTACAGAAGAGAGAA 57.455 47.619 24.68 0.00 0.00 2.87
228 229 3.436243 ACCCCTGTACAGAAGAGAGAAG 58.564 50.000 24.68 3.81 0.00 2.85
229 230 2.763448 CCCCTGTACAGAAGAGAGAAGG 59.237 54.545 24.68 12.55 0.00 3.46
230 231 2.167487 CCCTGTACAGAAGAGAGAAGGC 59.833 54.545 24.68 0.00 0.00 4.35
231 232 2.828520 CCTGTACAGAAGAGAGAAGGCA 59.171 50.000 24.68 0.00 0.00 4.75
232 233 3.259374 CCTGTACAGAAGAGAGAAGGCAA 59.741 47.826 24.68 0.00 0.00 4.52
233 234 4.262635 CCTGTACAGAAGAGAGAAGGCAAA 60.263 45.833 24.68 0.00 0.00 3.68
234 235 5.290493 TGTACAGAAGAGAGAAGGCAAAA 57.710 39.130 0.00 0.00 0.00 2.44
235 236 5.057149 TGTACAGAAGAGAGAAGGCAAAAC 58.943 41.667 0.00 0.00 0.00 2.43
236 237 4.156455 ACAGAAGAGAGAAGGCAAAACA 57.844 40.909 0.00 0.00 0.00 2.83
237 238 4.526970 ACAGAAGAGAGAAGGCAAAACAA 58.473 39.130 0.00 0.00 0.00 2.83
238 239 5.136105 ACAGAAGAGAGAAGGCAAAACAAT 58.864 37.500 0.00 0.00 0.00 2.71
239 240 5.009410 ACAGAAGAGAGAAGGCAAAACAATG 59.991 40.000 0.00 0.00 0.00 2.82
240 241 3.930634 AGAGAGAAGGCAAAACAATGC 57.069 42.857 0.00 0.00 45.67 3.56
246 247 4.341827 GCAAAACAATGCGCACCT 57.658 50.000 14.90 0.00 36.45 4.00
247 248 3.488048 GCAAAACAATGCGCACCTA 57.512 47.368 14.90 0.00 36.45 3.08
248 249 1.777101 GCAAAACAATGCGCACCTAA 58.223 45.000 14.90 0.00 36.45 2.69
249 250 2.336667 GCAAAACAATGCGCACCTAAT 58.663 42.857 14.90 0.00 36.45 1.73
250 251 2.736192 GCAAAACAATGCGCACCTAATT 59.264 40.909 14.90 0.00 36.45 1.40
251 252 3.186205 GCAAAACAATGCGCACCTAATTT 59.814 39.130 14.90 8.25 36.45 1.82
252 253 4.666402 GCAAAACAATGCGCACCTAATTTC 60.666 41.667 14.90 0.00 36.45 2.17
253 254 2.939460 ACAATGCGCACCTAATTTCC 57.061 45.000 14.90 0.00 0.00 3.13
254 255 2.166829 ACAATGCGCACCTAATTTCCA 58.833 42.857 14.90 0.00 0.00 3.53
255 256 2.164219 ACAATGCGCACCTAATTTCCAG 59.836 45.455 14.90 0.00 0.00 3.86
256 257 2.418368 ATGCGCACCTAATTTCCAGA 57.582 45.000 14.90 0.00 0.00 3.86
257 258 2.418368 TGCGCACCTAATTTCCAGAT 57.582 45.000 5.66 0.00 0.00 2.90
258 259 3.552132 TGCGCACCTAATTTCCAGATA 57.448 42.857 5.66 0.00 0.00 1.98
259 260 3.879998 TGCGCACCTAATTTCCAGATAA 58.120 40.909 5.66 0.00 0.00 1.75
260 261 4.265893 TGCGCACCTAATTTCCAGATAAA 58.734 39.130 5.66 0.00 0.00 1.40
261 262 4.335315 TGCGCACCTAATTTCCAGATAAAG 59.665 41.667 5.66 0.00 0.00 1.85
262 263 4.574828 GCGCACCTAATTTCCAGATAAAGA 59.425 41.667 0.30 0.00 0.00 2.52
263 264 5.065988 GCGCACCTAATTTCCAGATAAAGAA 59.934 40.000 0.30 0.00 0.00 2.52
264 265 6.404293 GCGCACCTAATTTCCAGATAAAGAAA 60.404 38.462 0.30 0.00 36.48 2.52
265 266 7.189512 CGCACCTAATTTCCAGATAAAGAAAG 58.810 38.462 0.00 0.00 35.57 2.62
266 267 7.148239 CGCACCTAATTTCCAGATAAAGAAAGT 60.148 37.037 0.00 0.00 35.57 2.66
267 268 9.174166 GCACCTAATTTCCAGATAAAGAAAGTA 57.826 33.333 0.00 0.00 35.57 2.24
273 274 9.898152 AATTTCCAGATAAAGAAAGTAGAGAGG 57.102 33.333 0.00 0.00 35.57 3.69
274 275 6.472686 TCCAGATAAAGAAAGTAGAGAGGC 57.527 41.667 0.00 0.00 0.00 4.70
275 276 5.958380 TCCAGATAAAGAAAGTAGAGAGGCA 59.042 40.000 0.00 0.00 0.00 4.75
276 277 6.440647 TCCAGATAAAGAAAGTAGAGAGGCAA 59.559 38.462 0.00 0.00 0.00 4.52
277 278 7.038302 TCCAGATAAAGAAAGTAGAGAGGCAAA 60.038 37.037 0.00 0.00 0.00 3.68
278 279 7.607991 CCAGATAAAGAAAGTAGAGAGGCAAAA 59.392 37.037 0.00 0.00 0.00 2.44
279 280 9.171877 CAGATAAAGAAAGTAGAGAGGCAAAAT 57.828 33.333 0.00 0.00 0.00 1.82
287 288 9.670719 GAAAGTAGAGAGGCAAAATAATAATGC 57.329 33.333 0.00 0.00 39.33 3.56
288 289 8.986929 AAGTAGAGAGGCAAAATAATAATGCT 57.013 30.769 0.00 0.00 39.94 3.79
308 309 8.798859 AATGCTATATGAGTTGAACTGAAGTT 57.201 30.769 0.90 0.00 41.64 2.66
309 310 9.890629 AATGCTATATGAGTTGAACTGAAGTTA 57.109 29.630 0.90 0.00 38.56 2.24
310 311 8.703604 TGCTATATGAGTTGAACTGAAGTTAC 57.296 34.615 0.90 0.00 38.56 2.50
311 312 8.531982 TGCTATATGAGTTGAACTGAAGTTACT 58.468 33.333 0.90 0.00 38.56 2.24
312 313 9.372369 GCTATATGAGTTGAACTGAAGTTACTT 57.628 33.333 0.90 0.00 38.56 2.24
315 316 9.778741 ATATGAGTTGAACTGAAGTTACTTTGA 57.221 29.630 0.90 0.00 38.56 2.69
316 317 7.539712 TGAGTTGAACTGAAGTTACTTTGAG 57.460 36.000 0.90 1.53 38.56 3.02
317 318 6.037172 TGAGTTGAACTGAAGTTACTTTGAGC 59.963 38.462 0.90 0.00 38.56 4.26
318 319 6.116126 AGTTGAACTGAAGTTACTTTGAGCT 58.884 36.000 0.00 0.00 38.56 4.09
319 320 6.258947 AGTTGAACTGAAGTTACTTTGAGCTC 59.741 38.462 6.82 6.82 38.56 4.09
320 321 5.057149 TGAACTGAAGTTACTTTGAGCTCC 58.943 41.667 12.15 0.00 38.56 4.70
321 322 4.009370 ACTGAAGTTACTTTGAGCTCCC 57.991 45.455 12.15 0.00 0.00 4.30
322 323 3.391296 ACTGAAGTTACTTTGAGCTCCCA 59.609 43.478 12.15 0.00 0.00 4.37
323 324 3.740115 TGAAGTTACTTTGAGCTCCCAC 58.260 45.455 12.15 0.00 0.00 4.61
324 325 3.135712 TGAAGTTACTTTGAGCTCCCACA 59.864 43.478 12.15 0.00 0.00 4.17
325 326 3.127425 AGTTACTTTGAGCTCCCACAC 57.873 47.619 12.15 0.56 0.00 3.82
326 327 2.152016 GTTACTTTGAGCTCCCACACC 58.848 52.381 12.15 0.00 0.00 4.16
327 328 1.429930 TACTTTGAGCTCCCACACCA 58.570 50.000 12.15 0.00 0.00 4.17
328 329 0.550914 ACTTTGAGCTCCCACACCAA 59.449 50.000 12.15 0.00 0.00 3.67
329 330 1.064017 ACTTTGAGCTCCCACACCAAA 60.064 47.619 12.15 2.78 0.00 3.28
330 331 1.610522 CTTTGAGCTCCCACACCAAAG 59.389 52.381 12.15 9.18 38.13 2.77
331 332 0.843309 TTGAGCTCCCACACCAAAGA 59.157 50.000 12.15 0.00 0.00 2.52
332 333 0.843309 TGAGCTCCCACACCAAAGAA 59.157 50.000 12.15 0.00 0.00 2.52
333 334 1.239347 GAGCTCCCACACCAAAGAAC 58.761 55.000 0.87 0.00 0.00 3.01
334 335 0.535102 AGCTCCCACACCAAAGAACG 60.535 55.000 0.00 0.00 0.00 3.95
335 336 0.818040 GCTCCCACACCAAAGAACGT 60.818 55.000 0.00 0.00 0.00 3.99
336 337 1.675552 CTCCCACACCAAAGAACGTT 58.324 50.000 0.00 0.00 0.00 3.99
337 338 2.021457 CTCCCACACCAAAGAACGTTT 58.979 47.619 0.46 0.00 0.00 3.60
338 339 2.018515 TCCCACACCAAAGAACGTTTC 58.981 47.619 0.46 0.00 0.00 2.78
339 340 1.066454 CCCACACCAAAGAACGTTTCC 59.934 52.381 0.46 0.00 0.00 3.13
340 341 1.066454 CCACACCAAAGAACGTTTCCC 59.934 52.381 0.46 0.00 0.00 3.97
341 342 1.746220 CACACCAAAGAACGTTTCCCA 59.254 47.619 0.46 0.00 0.00 4.37
342 343 2.164624 CACACCAAAGAACGTTTCCCAA 59.835 45.455 0.46 0.00 0.00 4.12
343 344 2.826725 ACACCAAAGAACGTTTCCCAAA 59.173 40.909 0.46 0.00 0.00 3.28
344 345 3.183754 CACCAAAGAACGTTTCCCAAAC 58.816 45.455 0.46 0.00 38.02 2.93
345 346 3.093814 ACCAAAGAACGTTTCCCAAACT 58.906 40.909 0.46 0.00 39.23 2.66
346 347 3.119280 ACCAAAGAACGTTTCCCAAACTG 60.119 43.478 0.46 0.00 39.23 3.16
347 348 3.129638 CCAAAGAACGTTTCCCAAACTGA 59.870 43.478 0.46 0.00 39.23 3.41
348 349 4.102649 CAAAGAACGTTTCCCAAACTGAC 58.897 43.478 0.46 0.00 39.23 3.51
349 350 1.937899 AGAACGTTTCCCAAACTGACG 59.062 47.619 0.46 0.00 39.23 4.35
350 351 1.935199 GAACGTTTCCCAAACTGACGA 59.065 47.619 0.46 0.00 39.23 4.20
351 352 2.249844 ACGTTTCCCAAACTGACGAT 57.750 45.000 0.94 0.00 39.23 3.73
352 353 1.871039 ACGTTTCCCAAACTGACGATG 59.129 47.619 0.94 0.00 39.23 3.84
353 354 1.399727 CGTTTCCCAAACTGACGATGC 60.400 52.381 0.00 0.00 39.23 3.91
354 355 1.606668 GTTTCCCAAACTGACGATGCA 59.393 47.619 0.00 0.00 38.35 3.96
355 356 1.522668 TTCCCAAACTGACGATGCAG 58.477 50.000 0.00 0.00 41.63 4.41
356 357 0.684535 TCCCAAACTGACGATGCAGA 59.315 50.000 10.65 0.00 39.20 4.26
357 358 1.081892 CCCAAACTGACGATGCAGAG 58.918 55.000 10.65 0.00 39.20 3.35
358 359 1.338105 CCCAAACTGACGATGCAGAGA 60.338 52.381 10.65 0.00 39.20 3.10
359 360 2.416747 CCAAACTGACGATGCAGAGAA 58.583 47.619 10.65 0.00 39.20 2.87
360 361 2.807967 CCAAACTGACGATGCAGAGAAA 59.192 45.455 10.65 0.00 39.20 2.52
361 362 3.250762 CCAAACTGACGATGCAGAGAAAA 59.749 43.478 10.65 0.00 39.20 2.29
362 363 4.461405 CAAACTGACGATGCAGAGAAAAG 58.539 43.478 10.65 0.00 39.20 2.27
363 364 3.667497 ACTGACGATGCAGAGAAAAGA 57.333 42.857 10.65 0.00 39.20 2.52
364 365 3.995199 ACTGACGATGCAGAGAAAAGAA 58.005 40.909 10.65 0.00 39.20 2.52
365 366 3.993081 ACTGACGATGCAGAGAAAAGAAG 59.007 43.478 10.65 0.00 39.20 2.85
366 367 4.240888 CTGACGATGCAGAGAAAAGAAGA 58.759 43.478 0.00 0.00 38.14 2.87
367 368 3.990469 TGACGATGCAGAGAAAAGAAGAC 59.010 43.478 0.00 0.00 0.00 3.01
368 369 3.990469 GACGATGCAGAGAAAAGAAGACA 59.010 43.478 0.00 0.00 0.00 3.41
369 370 3.743396 ACGATGCAGAGAAAAGAAGACAC 59.257 43.478 0.00 0.00 0.00 3.67
370 371 3.742882 CGATGCAGAGAAAAGAAGACACA 59.257 43.478 0.00 0.00 0.00 3.72
371 372 4.143158 CGATGCAGAGAAAAGAAGACACAG 60.143 45.833 0.00 0.00 0.00 3.66
372 373 4.406648 TGCAGAGAAAAGAAGACACAGA 57.593 40.909 0.00 0.00 0.00 3.41
373 374 4.965814 TGCAGAGAAAAGAAGACACAGAT 58.034 39.130 0.00 0.00 0.00 2.90
374 375 5.371526 TGCAGAGAAAAGAAGACACAGATT 58.628 37.500 0.00 0.00 0.00 2.40
375 376 5.824624 TGCAGAGAAAAGAAGACACAGATTT 59.175 36.000 0.00 0.00 0.00 2.17
376 377 6.319658 TGCAGAGAAAAGAAGACACAGATTTT 59.680 34.615 0.00 0.00 0.00 1.82
377 378 6.855403 GCAGAGAAAAGAAGACACAGATTTTC 59.145 38.462 0.00 0.00 39.18 2.29
1531 1913 5.631026 GTGAAATACCAATGCATATAGGCG 58.369 41.667 0.00 0.00 36.28 5.52
1632 2014 7.859325 AAAGCGCTTGGTTAGATTAGATTTA 57.141 32.000 25.80 0.00 31.91 1.40
1659 2041 9.034800 TCTAACAATAATCTTTCTGGGCAAATT 57.965 29.630 0.00 0.00 0.00 1.82
1663 2045 4.541973 AATCTTTCTGGGCAAATTCCAC 57.458 40.909 0.00 0.00 0.00 4.02
1665 2047 1.885887 CTTTCTGGGCAAATTCCACGA 59.114 47.619 0.00 0.00 0.00 4.35
1669 2051 1.200020 CTGGGCAAATTCCACGAGAAC 59.800 52.381 0.00 0.00 37.29 3.01
1672 2054 3.078837 GGGCAAATTCCACGAGAACTAA 58.921 45.455 0.00 0.00 37.29 2.24
1675 2057 4.215613 GGCAAATTCCACGAGAACTAAGTT 59.784 41.667 0.00 0.00 37.29 2.66
1677 2059 5.689819 CAAATTCCACGAGAACTAAGTTGG 58.310 41.667 0.00 0.00 37.29 3.77
1681 2063 5.733620 TCCACGAGAACTAAGTTGGTTAT 57.266 39.130 4.40 1.29 0.00 1.89
1682 2064 6.105397 TCCACGAGAACTAAGTTGGTTATT 57.895 37.500 4.40 0.00 0.00 1.40
1683 2065 5.929992 TCCACGAGAACTAAGTTGGTTATTG 59.070 40.000 11.29 11.29 0.00 1.90
1684 2066 5.390567 CCACGAGAACTAAGTTGGTTATTGC 60.391 44.000 12.45 0.00 0.00 3.56
1687 2069 5.408604 CGAGAACTAAGTTGGTTATTGCAGT 59.591 40.000 4.40 0.00 0.00 4.40
1689 2071 6.970484 AGAACTAAGTTGGTTATTGCAGTTG 58.030 36.000 4.40 0.00 0.00 3.16
1691 2073 5.381757 ACTAAGTTGGTTATTGCAGTTGGA 58.618 37.500 0.00 0.00 0.00 3.53
1692 2074 4.853924 AAGTTGGTTATTGCAGTTGGAG 57.146 40.909 0.00 0.00 0.00 3.86
1694 2076 4.666512 AGTTGGTTATTGCAGTTGGAGAT 58.333 39.130 0.00 0.00 0.00 2.75
1699 2081 6.115446 TGGTTATTGCAGTTGGAGATCTTAG 58.885 40.000 0.00 0.00 0.00 2.18
1701 2083 6.995091 GGTTATTGCAGTTGGAGATCTTAGAT 59.005 38.462 0.00 0.00 0.00 1.98
1707 2089 5.048083 GCAGTTGGAGATCTTAGATCTCGAT 60.048 44.000 32.96 19.83 44.04 3.59
1709 2091 7.626240 GCAGTTGGAGATCTTAGATCTCGATAG 60.626 44.444 32.96 24.62 44.04 2.08
1712 2094 6.241645 TGGAGATCTTAGATCTCGATAGCAA 58.758 40.000 32.96 16.81 44.04 3.91
1713 2095 6.150307 TGGAGATCTTAGATCTCGATAGCAAC 59.850 42.308 32.96 21.97 44.04 4.17
1758 2359 8.925700 CCAAATAGCTTAGGAAATTTGACAAAC 58.074 33.333 15.71 0.00 40.24 2.93
1779 2380 2.224209 CCTCACAACCTTGTACCTTCGT 60.224 50.000 0.00 0.00 39.91 3.85
1795 2396 4.634199 CCTTCGTGGTAACCAACTTTCTA 58.366 43.478 0.00 0.00 34.18 2.10
1807 2408 4.898861 ACCAACTTTCTAGGCAAATTCCAA 59.101 37.500 0.00 0.00 0.00 3.53
1816 2417 7.016153 TCTAGGCAAATTCCAAGAGAACTAA 57.984 36.000 0.00 0.00 37.29 2.24
1824 2425 8.846211 CAAATTCCAAGAGAACTAAGTTGGTTA 58.154 33.333 4.40 0.00 40.40 2.85
1833 2434 6.970484 AGAACTAAGTTGGTTATTGCAGTTG 58.030 36.000 4.40 0.00 0.00 3.16
1843 2444 6.480763 TGGTTATTGCAGTTGGAGATCTTAA 58.519 36.000 0.00 0.00 0.00 1.85
1881 2482 5.402054 TGCTAATAGGTTCCATCCCAAAT 57.598 39.130 0.00 0.00 0.00 2.32
1885 2486 5.669798 AATAGGTTCCATCCCAAATAGCT 57.330 39.130 0.00 0.00 0.00 3.32
1890 2491 4.141251 GGTTCCATCCCAAATAGCTTAGGA 60.141 45.833 0.00 0.00 0.00 2.94
1902 2503 8.925700 CCAAATAGCTTAGGAAATTTGACAAAC 58.074 33.333 15.71 0.00 40.24 2.93
1908 2509 6.460953 GCTTAGGAAATTTGACAAACCTCACA 60.461 38.462 10.89 0.00 0.00 3.58
1921 2522 3.487120 ACCTCACAACCTTGTACCTTC 57.513 47.619 0.00 0.00 39.91 3.46
1924 2525 3.753272 CCTCACAACCTTGTACCTTCATG 59.247 47.826 0.00 0.00 39.91 3.07
1966 2568 7.251281 GCAAATTCCACAAGAACTAGGTTATC 58.749 38.462 0.00 0.00 37.29 1.75
1981 2583 9.756571 AACTAGGTTATCTTGAGAACTTAGAGA 57.243 33.333 24.04 0.00 37.40 3.10
2015 2617 4.846040 TGGTACAACACACTAACAGGTTT 58.154 39.130 0.00 0.00 31.92 3.27
2127 2729 2.832129 TCGCCTTGTGAACTTAGAGGAT 59.168 45.455 0.00 0.00 0.00 3.24
2131 2733 5.003804 GCCTTGTGAACTTAGAGGATTTGA 58.996 41.667 0.00 0.00 0.00 2.69
2137 2739 6.205464 TGTGAACTTAGAGGATTTGAAGCTTG 59.795 38.462 2.10 0.00 0.00 4.01
2141 2743 6.410540 ACTTAGAGGATTTGAAGCTTGGTAG 58.589 40.000 2.10 0.00 0.00 3.18
2142 2744 4.917906 AGAGGATTTGAAGCTTGGTAGT 57.082 40.909 2.10 0.00 0.00 2.73
2146 2748 4.935808 AGGATTTGAAGCTTGGTAGTAACG 59.064 41.667 2.10 0.00 0.00 3.18
2158 4853 3.057315 TGGTAGTAACGCACTAACTGGTC 60.057 47.826 12.53 0.00 46.16 4.02
2170 4865 3.336694 ACTAACTGGTCCCATCCCAAATT 59.663 43.478 0.00 0.00 0.00 1.82
2173 4868 0.617249 TGGTCCCATCCCAAATTGCC 60.617 55.000 0.00 0.00 0.00 4.52
2178 4873 2.791179 TCCCATCCCAAATTGCCTAGAT 59.209 45.455 0.00 0.00 0.00 1.98
2201 4896 8.517878 AGATAATTTGACCAAACTCACAATCTG 58.482 33.333 0.00 0.00 32.51 2.90
2212 5051 7.409697 CAAACTCACAATCTGGGATATTTACG 58.590 38.462 0.00 0.00 0.00 3.18
2252 5091 3.952323 CACATCCCTCGAGAACTAGGTTA 59.048 47.826 15.71 0.00 0.00 2.85
2253 5092 4.585162 CACATCCCTCGAGAACTAGGTTAT 59.415 45.833 15.71 0.00 0.00 1.89
2258 5097 4.888239 CCCTCGAGAACTAGGTTATCTTGA 59.112 45.833 15.71 1.37 32.41 3.02
2276 5115 6.090483 TCTTGAGAACTTAGAGGAGTTGTG 57.910 41.667 0.00 0.00 39.84 3.33
2281 5120 4.103311 AGAACTTAGAGGAGTTGTGGCTTT 59.897 41.667 0.00 0.00 39.84 3.51
2311 5150 2.919602 ACACTAACAGGTTCCATCCCAT 59.080 45.455 0.00 0.00 0.00 4.00
2313 5152 4.080526 ACACTAACAGGTTCCATCCCATAC 60.081 45.833 0.00 0.00 0.00 2.39
2363 5346 3.181510 GCCTTGTATCTTTACAGCAACCG 60.182 47.826 0.00 0.00 39.43 4.44
2400 5383 1.746220 CCTCGAGAACTAGGTCACCTG 59.254 57.143 15.71 0.00 34.61 4.00
2434 5418 1.873591 ACTTGGAGCTTAGCAACAACG 59.126 47.619 7.07 7.63 0.00 4.10
2440 5424 2.069273 AGCTTAGCAACAACGCACTAG 58.931 47.619 7.07 0.00 0.00 2.57
2485 5613 6.209391 CCTAGGAAATTTGACCAAACTCACAT 59.791 38.462 1.05 0.00 32.51 3.21
2492 5620 5.221303 ATTTGACCAAACTCACATCCTTGTG 60.221 40.000 0.00 0.00 42.60 3.33
2493 5621 7.588644 ATTTGACCAAACTCACATCCTTGTGT 61.589 38.462 6.05 0.00 42.25 3.72
2528 5656 2.625639 ACTTTCTGGACACATCCCTCT 58.374 47.619 0.00 0.00 45.59 3.69
2538 5666 3.301274 ACACATCCCTCTAGAACTAGGC 58.699 50.000 8.68 0.00 34.06 3.93
2544 5816 3.792684 TCCCTCTAGAACTAGGCTACCTT 59.207 47.826 8.68 0.00 34.61 3.50
2546 5818 4.386536 CCCTCTAGAACTAGGCTACCTTGA 60.387 50.000 8.68 0.00 34.61 3.02
2555 5827 5.581975 ACTAGGCTACCTTGAGAACTTAGT 58.418 41.667 2.03 0.00 34.61 2.24
2571 5843 8.423906 AGAACTTAGTGGACTTGAATCTTAGA 57.576 34.615 0.00 0.00 0.00 2.10
2577 5849 9.793259 TTAGTGGACTTGAATCTTAGAAACAAT 57.207 29.630 5.32 0.00 0.00 2.71
2602 5874 1.616159 AACAGGTTCCATCCCAAACG 58.384 50.000 0.00 0.00 0.00 3.60
2619 5892 2.124277 ACGGCCTAGGAAATTTGACC 57.876 50.000 14.75 0.00 0.00 4.02
2628 5901 6.003950 CCTAGGAAATTTGACCAACTTCTCA 58.996 40.000 1.05 0.00 0.00 3.27
2637 5910 5.304686 TGACCAACTTCTCAACCTTGTAT 57.695 39.130 0.00 0.00 0.00 2.29
2646 5919 4.569943 TCTCAACCTTGTATCTTGACAGC 58.430 43.478 0.00 0.00 0.00 4.40
2661 5934 2.297701 GACAGCAACCAACTTTCTGGA 58.702 47.619 0.00 0.00 38.96 3.86
2662 5935 2.024414 ACAGCAACCAACTTTCTGGAC 58.976 47.619 0.00 0.00 38.96 4.02
2664 5937 2.624838 CAGCAACCAACTTTCTGGACAT 59.375 45.455 0.00 0.00 38.96 3.06
2667 5940 4.702131 AGCAACCAACTTTCTGGACATATC 59.298 41.667 0.00 0.00 38.96 1.63
2677 5950 3.223435 TCTGGACATATCCCTCGAGAAC 58.777 50.000 15.71 0.00 45.59 3.01
2686 5959 6.660094 ACATATCCCTCGAGAACTAGGTTATC 59.340 42.308 15.71 0.00 31.41 1.75
2688 5961 5.126699 TCCCTCGAGAACTAGGTTATCTT 57.873 43.478 15.71 0.00 32.41 2.40
2690 5963 4.888239 CCCTCGAGAACTAGGTTATCTTGA 59.112 45.833 15.71 1.37 32.41 3.02
2691 5964 5.009210 CCCTCGAGAACTAGGTTATCTTGAG 59.991 48.000 15.71 18.37 45.37 3.02
2692 5965 5.591067 CCTCGAGAACTAGGTTATCTTGAGT 59.409 44.000 15.71 0.00 44.77 3.41
2701 5974 8.983702 ACTAGGTTATCTTGAGTACTTAGAGG 57.016 38.462 12.44 0.00 0.00 3.69
2703 5976 9.280174 CTAGGTTATCTTGAGTACTTAGAGGAG 57.720 40.741 12.44 0.00 0.00 3.69
2707 5980 6.783708 ATCTTGAGTACTTAGAGGAGTTGG 57.216 41.667 12.44 0.00 0.00 3.77
2709 5982 5.477291 TCTTGAGTACTTAGAGGAGTTGGTG 59.523 44.000 0.00 0.00 0.00 4.17
2713 5986 5.331069 AGTACTTAGAGGAGTTGGTGCTTA 58.669 41.667 0.00 0.00 0.00 3.09
2714 5987 4.810191 ACTTAGAGGAGTTGGTGCTTAG 57.190 45.455 0.00 0.00 0.00 2.18
2716 5989 0.247736 AGAGGAGTTGGTGCTTAGCG 59.752 55.000 0.00 0.00 0.00 4.26
2718 5991 0.037232 AGGAGTTGGTGCTTAGCGAC 60.037 55.000 0.00 0.00 0.00 5.19
2759 6032 6.204882 CACATTCCCCGAGAATTAGGTTATTC 59.795 42.308 0.00 0.00 42.86 1.75
2760 6033 5.961398 TTCCCCGAGAATTAGGTTATTCA 57.039 39.130 0.00 0.00 37.06 2.57
2838 6111 1.180029 GCCTTGGCAATCTGACACAT 58.820 50.000 6.79 0.00 33.32 3.21
3018 7788 2.041922 TCCTCATCCACCCCTCCG 60.042 66.667 0.00 0.00 0.00 4.63
3019 7789 3.164269 CCTCATCCACCCCTCCGG 61.164 72.222 0.00 0.00 37.81 5.14
3050 7833 1.002274 GCTCCTCTCCCTCCCTCAA 59.998 63.158 0.00 0.00 0.00 3.02
3069 7860 4.966787 GGACCAAACCCCTGCGCA 62.967 66.667 10.98 10.98 0.00 6.09
3083 7874 4.473520 CGCAAGCCGGACCCATCT 62.474 66.667 5.05 0.00 0.00 2.90
3084 7875 2.514824 GCAAGCCGGACCCATCTC 60.515 66.667 5.05 0.00 0.00 2.75
3085 7876 3.036429 GCAAGCCGGACCCATCTCT 62.036 63.158 5.05 0.00 0.00 3.10
3086 7877 1.153289 CAAGCCGGACCCATCTCTG 60.153 63.158 5.05 0.00 0.00 3.35
3087 7878 1.306141 AAGCCGGACCCATCTCTGA 60.306 57.895 5.05 0.00 0.00 3.27
3088 7879 1.617947 AAGCCGGACCCATCTCTGAC 61.618 60.000 5.05 0.00 0.00 3.51
3092 7883 1.032657 CGGACCCATCTCTGACGACT 61.033 60.000 0.00 0.00 0.00 4.18
3095 7888 0.039764 ACCCATCTCTGACGACTCCA 59.960 55.000 0.00 0.00 0.00 3.86
3096 7896 0.743688 CCCATCTCTGACGACTCCAG 59.256 60.000 0.00 0.00 0.00 3.86
3101 7901 0.962855 CTCTGACGACTCCAGCTCCA 60.963 60.000 0.00 0.00 0.00 3.86
3135 7935 2.896243 CTGCACAAGCTCATTCTCAC 57.104 50.000 0.00 0.00 42.74 3.51
3136 7936 1.128136 CTGCACAAGCTCATTCTCACG 59.872 52.381 0.00 0.00 42.74 4.35
3137 7937 0.445436 GCACAAGCTCATTCTCACGG 59.555 55.000 0.00 0.00 37.91 4.94
3138 7938 0.445436 CACAAGCTCATTCTCACGGC 59.555 55.000 0.00 0.00 0.00 5.68
3139 7939 1.016130 ACAAGCTCATTCTCACGGCG 61.016 55.000 4.80 4.80 0.00 6.46
3140 7940 1.448540 AAGCTCATTCTCACGGCGG 60.449 57.895 13.24 0.00 0.00 6.13
3141 7941 3.567797 GCTCATTCTCACGGCGGC 61.568 66.667 13.24 0.00 0.00 6.53
3142 7942 2.892425 CTCATTCTCACGGCGGCC 60.892 66.667 13.24 9.54 0.00 6.13
3162 7962 2.279073 CACCGCCTCCTCCTCCTA 59.721 66.667 0.00 0.00 0.00 2.94
3167 7996 1.531840 GCCTCCTCCTCCTATGCGA 60.532 63.158 0.00 0.00 0.00 5.10
3188 8033 2.987547 TCCTCACCGACGGGTCAC 60.988 66.667 20.00 0.00 46.01 3.67
3189 8034 2.989824 CCTCACCGACGGGTCACT 60.990 66.667 20.00 0.00 46.01 3.41
3190 8035 2.571216 CCTCACCGACGGGTCACTT 61.571 63.158 20.00 0.00 46.01 3.16
3191 8036 1.372997 CTCACCGACGGGTCACTTG 60.373 63.158 20.00 6.19 46.01 3.16
3234 8185 4.287781 TCGCCGCCGTCTTCAACA 62.288 61.111 0.00 0.00 35.54 3.33
3362 8343 4.452733 CGGGTCCTCCAACCTCGC 62.453 72.222 0.00 0.00 39.42 5.03
3363 8344 4.097361 GGGTCCTCCAACCTCGCC 62.097 72.222 0.00 0.00 39.42 5.54
3364 8345 3.003763 GGTCCTCCAACCTCGCCT 61.004 66.667 0.00 0.00 36.32 5.52
3365 8346 2.579738 GTCCTCCAACCTCGCCTC 59.420 66.667 0.00 0.00 0.00 4.70
3366 8347 3.068691 TCCTCCAACCTCGCCTCG 61.069 66.667 0.00 0.00 0.00 4.63
3467 8508 0.673644 AGCTTGTACGGTGGATGTGC 60.674 55.000 0.00 0.00 0.00 4.57
3477 8518 3.443045 GGATGTGCAACCCCAGCG 61.443 66.667 0.00 0.00 34.36 5.18
3478 8519 4.120331 GATGTGCAACCCCAGCGC 62.120 66.667 0.00 0.00 42.56 5.92
3510 8555 5.032863 CACTGCTTCTGTGCTAATTAATGC 58.967 41.667 0.00 0.00 0.00 3.56
3511 8556 4.946157 ACTGCTTCTGTGCTAATTAATGCT 59.054 37.500 0.00 0.00 0.00 3.79
3512 8557 5.163683 ACTGCTTCTGTGCTAATTAATGCTG 60.164 40.000 0.00 0.00 0.00 4.41
3513 8558 4.040376 GCTTCTGTGCTAATTAATGCTGC 58.960 43.478 0.00 0.00 0.00 5.25
3514 8559 4.201990 GCTTCTGTGCTAATTAATGCTGCT 60.202 41.667 0.00 0.00 0.00 4.24
3515 8560 5.678107 GCTTCTGTGCTAATTAATGCTGCTT 60.678 40.000 0.00 0.00 0.00 3.91
3526 8571 2.220653 ATGCTGCTTTGCTTAGGGAA 57.779 45.000 0.00 0.00 0.00 3.97
3530 8575 0.608035 TGCTTTGCTTAGGGAACGGG 60.608 55.000 0.00 0.00 0.00 5.28
3535 8605 0.902531 TGCTTAGGGAACGGGAAGAG 59.097 55.000 0.00 0.00 0.00 2.85
3536 8606 0.462225 GCTTAGGGAACGGGAAGAGC 60.462 60.000 0.00 0.00 0.00 4.09
3537 8607 0.179108 CTTAGGGAACGGGAAGAGCG 60.179 60.000 0.00 0.00 0.00 5.03
3540 8610 1.740664 GGGAACGGGAAGAGCGTTC 60.741 63.158 0.58 0.58 40.59 3.95
3553 8623 4.162640 CGTTCTTCGCGTGGATCA 57.837 55.556 5.77 0.00 0.00 2.92
3554 8624 1.991430 CGTTCTTCGCGTGGATCAG 59.009 57.895 5.77 0.00 0.00 2.90
3556 8626 0.389948 GTTCTTCGCGTGGATCAGGT 60.390 55.000 5.77 0.00 0.00 4.00
3557 8627 0.389817 TTCTTCGCGTGGATCAGGTG 60.390 55.000 5.77 0.00 0.00 4.00
3570 9102 3.366679 GGATCAGGTGCAGTTTCAATGTG 60.367 47.826 0.00 0.00 0.00 3.21
3572 9104 1.338973 CAGGTGCAGTTTCAATGTGCT 59.661 47.619 0.00 0.00 38.09 4.40
3576 9108 3.622612 GGTGCAGTTTCAATGTGCTTTTT 59.377 39.130 0.00 0.00 38.09 1.94
3577 9109 4.808364 GGTGCAGTTTCAATGTGCTTTTTA 59.192 37.500 0.00 0.00 38.09 1.52
3578 9110 5.466393 GGTGCAGTTTCAATGTGCTTTTTAT 59.534 36.000 0.00 0.00 38.09 1.40
3580 9112 7.170658 GGTGCAGTTTCAATGTGCTTTTTATAA 59.829 33.333 0.00 0.00 38.09 0.98
3582 9114 9.270640 TGCAGTTTCAATGTGCTTTTTATAATT 57.729 25.926 0.00 0.00 38.09 1.40
3583 9115 9.532697 GCAGTTTCAATGTGCTTTTTATAATTG 57.467 29.630 0.00 0.00 34.23 2.32
3595 9127 9.995003 TGCTTTTTATAATTGAAAAGTGATGGT 57.005 25.926 17.36 0.00 42.18 3.55
3620 9152 4.400529 TTGCTAATGAGACCGCTATTGA 57.599 40.909 0.00 0.00 0.00 2.57
3621 9153 3.982475 TGCTAATGAGACCGCTATTGAG 58.018 45.455 0.00 0.00 0.00 3.02
3623 9155 4.281941 TGCTAATGAGACCGCTATTGAGAT 59.718 41.667 0.00 0.00 0.00 2.75
3624 9156 4.624882 GCTAATGAGACCGCTATTGAGATG 59.375 45.833 0.00 0.00 0.00 2.90
3625 9157 3.674528 ATGAGACCGCTATTGAGATGG 57.325 47.619 0.00 0.00 0.00 3.51
3626 9158 1.688735 TGAGACCGCTATTGAGATGGG 59.311 52.381 0.00 0.00 0.00 4.00
3627 9159 1.689273 GAGACCGCTATTGAGATGGGT 59.311 52.381 0.00 0.00 0.00 4.51
3628 9160 2.103263 GAGACCGCTATTGAGATGGGTT 59.897 50.000 0.00 0.00 0.00 4.11
3704 9242 0.913451 ACTCTGGAGCAGGAAGGCAT 60.913 55.000 0.00 0.00 35.83 4.40
3757 9296 2.652530 GTCACCGCTACGACCCAA 59.347 61.111 0.00 0.00 0.00 4.12
3822 9369 0.036010 CCTGAAGCCTAGTGTGGGTG 60.036 60.000 0.00 0.00 37.93 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.681733 ACTCTGCCACGTCAGTCAAT 59.318 50.000 4.38 0.00 35.63 2.57
1 2 1.269723 CTACTCTGCCACGTCAGTCAA 59.730 52.381 4.38 0.00 35.63 3.18
2 3 0.881796 CTACTCTGCCACGTCAGTCA 59.118 55.000 4.38 0.00 35.63 3.41
3 4 1.131504 CTCTACTCTGCCACGTCAGTC 59.868 57.143 4.38 0.00 35.63 3.51
5 6 0.453793 CCTCTACTCTGCCACGTCAG 59.546 60.000 0.00 0.00 35.46 3.51
6 7 0.037734 TCCTCTACTCTGCCACGTCA 59.962 55.000 0.00 0.00 0.00 4.35
7 8 0.736053 CTCCTCTACTCTGCCACGTC 59.264 60.000 0.00 0.00 0.00 4.34
8 9 0.681564 CCTCCTCTACTCTGCCACGT 60.682 60.000 0.00 0.00 0.00 4.49
9 10 0.394488 TCCTCCTCTACTCTGCCACG 60.394 60.000 0.00 0.00 0.00 4.94
12 13 1.133325 TCCATCCTCCTCTACTCTGCC 60.133 57.143 0.00 0.00 0.00 4.85
16 17 3.252554 ACCATCCATCCTCCTCTACTC 57.747 52.381 0.00 0.00 0.00 2.59
18 19 3.323403 CAGAACCATCCATCCTCCTCTAC 59.677 52.174 0.00 0.00 0.00 2.59
19 20 3.581101 CAGAACCATCCATCCTCCTCTA 58.419 50.000 0.00 0.00 0.00 2.43
21 22 1.202746 GCAGAACCATCCATCCTCCTC 60.203 57.143 0.00 0.00 0.00 3.71
23 24 0.179006 GGCAGAACCATCCATCCTCC 60.179 60.000 0.00 0.00 38.86 4.30
24 25 0.548031 TGGCAGAACCATCCATCCTC 59.452 55.000 0.00 0.00 46.36 3.71
65 66 4.803426 CTGCCGCCGAGACCAGAC 62.803 72.222 0.00 0.00 0.00 3.51
67 68 4.504916 CTCTGCCGCCGAGACCAG 62.505 72.222 5.94 0.00 0.00 4.00
69 70 3.991536 GAACTCTGCCGCCGAGACC 62.992 68.421 17.66 5.80 32.87 3.85
70 71 2.507324 GAACTCTGCCGCCGAGAC 60.507 66.667 17.66 8.04 32.87 3.36
71 72 4.116328 CGAACTCTGCCGCCGAGA 62.116 66.667 17.66 0.00 32.87 4.04
73 74 4.116328 CTCGAACTCTGCCGCCGA 62.116 66.667 0.00 0.00 0.00 5.54
74 75 2.537792 TTACTCGAACTCTGCCGCCG 62.538 60.000 0.00 0.00 0.00 6.46
75 76 0.179108 ATTACTCGAACTCTGCCGCC 60.179 55.000 0.00 0.00 0.00 6.13
76 77 0.924090 CATTACTCGAACTCTGCCGC 59.076 55.000 0.00 0.00 0.00 6.53
77 78 1.560923 CCATTACTCGAACTCTGCCG 58.439 55.000 0.00 0.00 0.00 5.69
78 79 1.134670 AGCCATTACTCGAACTCTGCC 60.135 52.381 0.00 0.00 0.00 4.85
79 80 2.197577 GAGCCATTACTCGAACTCTGC 58.802 52.381 0.00 0.00 0.00 4.26
80 81 2.166459 TGGAGCCATTACTCGAACTCTG 59.834 50.000 0.00 0.00 37.57 3.35
81 82 2.457598 TGGAGCCATTACTCGAACTCT 58.542 47.619 0.00 0.00 37.57 3.24
84 85 2.866762 GTGATGGAGCCATTACTCGAAC 59.133 50.000 14.98 0.00 39.08 3.95
85 86 2.481276 CGTGATGGAGCCATTACTCGAA 60.481 50.000 18.53 0.00 39.72 3.71
86 87 1.067060 CGTGATGGAGCCATTACTCGA 59.933 52.381 18.53 0.00 39.72 4.04
87 88 1.202417 ACGTGATGGAGCCATTACTCG 60.202 52.381 18.53 13.88 39.72 4.18
88 89 2.101582 AGACGTGATGGAGCCATTACTC 59.898 50.000 18.53 14.89 39.72 2.59
89 90 2.101582 GAGACGTGATGGAGCCATTACT 59.898 50.000 18.53 8.69 39.72 2.24
90 91 2.474816 GAGACGTGATGGAGCCATTAC 58.525 52.381 12.87 12.87 38.88 1.89
91 92 1.067060 CGAGACGTGATGGAGCCATTA 59.933 52.381 3.11 0.00 36.70 1.90
92 93 0.179100 CGAGACGTGATGGAGCCATT 60.179 55.000 3.11 0.00 36.70 3.16
93 94 1.323271 ACGAGACGTGATGGAGCCAT 61.323 55.000 0.71 0.71 39.18 4.40
94 95 1.532604 AACGAGACGTGATGGAGCCA 61.533 55.000 0.00 0.00 39.99 4.75
95 96 0.454600 TAACGAGACGTGATGGAGCC 59.545 55.000 0.00 0.00 39.99 4.70
96 97 1.132643 ACTAACGAGACGTGATGGAGC 59.867 52.381 0.00 0.00 39.99 4.70
97 98 3.489180 AACTAACGAGACGTGATGGAG 57.511 47.619 0.00 0.00 39.99 3.86
98 99 3.571571 CAAACTAACGAGACGTGATGGA 58.428 45.455 0.00 0.00 39.99 3.41
100 101 2.729360 TGCAAACTAACGAGACGTGATG 59.271 45.455 0.00 0.00 39.99 3.07
102 103 2.495409 TGCAAACTAACGAGACGTGA 57.505 45.000 0.00 0.00 39.99 4.35
103 104 2.475111 ACATGCAAACTAACGAGACGTG 59.525 45.455 0.00 0.00 39.99 4.49
104 105 2.729882 GACATGCAAACTAACGAGACGT 59.270 45.455 0.00 0.00 43.97 4.34
105 106 2.222289 CGACATGCAAACTAACGAGACG 60.222 50.000 0.00 0.00 0.00 4.18
106 107 2.984471 TCGACATGCAAACTAACGAGAC 59.016 45.455 0.00 0.00 0.00 3.36
110 111 3.788434 ACTTCGACATGCAAACTAACG 57.212 42.857 0.00 0.00 0.00 3.18
112 113 6.816140 TCATCATACTTCGACATGCAAACTAA 59.184 34.615 0.00 0.00 0.00 2.24
113 114 6.337356 TCATCATACTTCGACATGCAAACTA 58.663 36.000 0.00 0.00 0.00 2.24
115 116 5.063944 ACTCATCATACTTCGACATGCAAAC 59.936 40.000 0.00 0.00 0.00 2.93
116 117 5.178061 ACTCATCATACTTCGACATGCAAA 58.822 37.500 0.00 0.00 0.00 3.68
119 120 7.413475 AAATACTCATCATACTTCGACATGC 57.587 36.000 0.00 0.00 0.00 4.06
120 121 8.820933 ACAAAATACTCATCATACTTCGACATG 58.179 33.333 0.00 0.00 0.00 3.21
122 123 8.771920 AACAAAATACTCATCATACTTCGACA 57.228 30.769 0.00 0.00 0.00 4.35
124 125 8.175069 GCAAACAAAATACTCATCATACTTCGA 58.825 33.333 0.00 0.00 0.00 3.71
125 126 8.177663 AGCAAACAAAATACTCATCATACTTCG 58.822 33.333 0.00 0.00 0.00 3.79
126 127 9.846248 AAGCAAACAAAATACTCATCATACTTC 57.154 29.630 0.00 0.00 0.00 3.01
127 128 9.846248 GAAGCAAACAAAATACTCATCATACTT 57.154 29.630 0.00 0.00 0.00 2.24
128 129 8.177663 CGAAGCAAACAAAATACTCATCATACT 58.822 33.333 0.00 0.00 0.00 2.12
130 131 7.962373 CACGAAGCAAACAAAATACTCATCATA 59.038 33.333 0.00 0.00 0.00 2.15
131 132 6.803320 CACGAAGCAAACAAAATACTCATCAT 59.197 34.615 0.00 0.00 0.00 2.45
132 133 6.142139 CACGAAGCAAACAAAATACTCATCA 58.858 36.000 0.00 0.00 0.00 3.07
133 134 6.086765 CACACGAAGCAAACAAAATACTCATC 59.913 38.462 0.00 0.00 0.00 2.92
134 135 5.914635 CACACGAAGCAAACAAAATACTCAT 59.085 36.000 0.00 0.00 0.00 2.90
137 138 5.493133 TCACACGAAGCAAACAAAATACT 57.507 34.783 0.00 0.00 0.00 2.12
138 139 7.748683 TCATATCACACGAAGCAAACAAAATAC 59.251 33.333 0.00 0.00 0.00 1.89
139 140 7.748683 GTCATATCACACGAAGCAAACAAAATA 59.251 33.333 0.00 0.00 0.00 1.40
140 141 6.582295 GTCATATCACACGAAGCAAACAAAAT 59.418 34.615 0.00 0.00 0.00 1.82
141 142 5.912396 GTCATATCACACGAAGCAAACAAAA 59.088 36.000 0.00 0.00 0.00 2.44
142 143 5.238432 AGTCATATCACACGAAGCAAACAAA 59.762 36.000 0.00 0.00 0.00 2.83
143 144 4.754618 AGTCATATCACACGAAGCAAACAA 59.245 37.500 0.00 0.00 0.00 2.83
144 145 4.314961 AGTCATATCACACGAAGCAAACA 58.685 39.130 0.00 0.00 0.00 2.83
145 146 4.928661 AGTCATATCACACGAAGCAAAC 57.071 40.909 0.00 0.00 0.00 2.93
146 147 7.609760 AAATAGTCATATCACACGAAGCAAA 57.390 32.000 0.00 0.00 0.00 3.68
147 148 7.333174 TGAAAATAGTCATATCACACGAAGCAA 59.667 33.333 0.00 0.00 0.00 3.91
149 150 7.119997 GTGAAAATAGTCATATCACACGAAGC 58.880 38.462 0.00 0.00 40.02 3.86
150 151 7.492669 AGGTGAAAATAGTCATATCACACGAAG 59.507 37.037 6.55 0.00 41.60 3.79
151 152 7.327975 AGGTGAAAATAGTCATATCACACGAA 58.672 34.615 6.55 0.00 41.60 3.85
152 153 6.873997 AGGTGAAAATAGTCATATCACACGA 58.126 36.000 6.55 0.00 41.60 4.35
153 154 8.818141 ATAGGTGAAAATAGTCATATCACACG 57.182 34.615 6.55 0.00 41.60 4.49
184 185 7.549488 GGGTATGAACAATCGAATCCTATAAGG 59.451 40.741 0.00 0.00 36.46 2.69
185 186 7.549488 GGGGTATGAACAATCGAATCCTATAAG 59.451 40.741 0.00 0.00 0.00 1.73
186 187 7.236847 AGGGGTATGAACAATCGAATCCTATAA 59.763 37.037 0.00 0.00 0.00 0.98
187 188 6.729100 AGGGGTATGAACAATCGAATCCTATA 59.271 38.462 0.00 0.00 0.00 1.31
188 189 5.548056 AGGGGTATGAACAATCGAATCCTAT 59.452 40.000 0.00 0.00 0.00 2.57
189 190 4.905456 AGGGGTATGAACAATCGAATCCTA 59.095 41.667 0.00 0.00 0.00 2.94
190 191 3.716872 AGGGGTATGAACAATCGAATCCT 59.283 43.478 0.00 0.00 0.00 3.24
191 192 3.815401 CAGGGGTATGAACAATCGAATCC 59.185 47.826 0.00 0.00 0.00 3.01
192 193 4.451900 ACAGGGGTATGAACAATCGAATC 58.548 43.478 0.00 0.00 0.00 2.52
193 194 4.503714 ACAGGGGTATGAACAATCGAAT 57.496 40.909 0.00 0.00 0.00 3.34
194 195 3.992943 ACAGGGGTATGAACAATCGAA 57.007 42.857 0.00 0.00 0.00 3.71
195 196 3.770388 TGTACAGGGGTATGAACAATCGA 59.230 43.478 0.00 0.00 0.00 3.59
196 197 4.119862 CTGTACAGGGGTATGAACAATCG 58.880 47.826 15.49 0.00 0.00 3.34
197 198 5.353394 TCTGTACAGGGGTATGAACAATC 57.647 43.478 22.48 0.00 0.00 2.67
198 199 5.487488 TCTTCTGTACAGGGGTATGAACAAT 59.513 40.000 22.48 0.00 0.00 2.71
199 200 4.841813 TCTTCTGTACAGGGGTATGAACAA 59.158 41.667 22.48 4.76 0.00 2.83
200 201 4.422057 TCTTCTGTACAGGGGTATGAACA 58.578 43.478 22.48 0.00 0.00 3.18
201 202 4.710375 TCTCTTCTGTACAGGGGTATGAAC 59.290 45.833 22.48 0.00 0.00 3.18
202 203 4.942944 TCTCTTCTGTACAGGGGTATGAA 58.057 43.478 22.48 7.11 0.00 2.57
203 204 4.229812 TCTCTCTTCTGTACAGGGGTATGA 59.770 45.833 22.48 11.61 0.00 2.15
204 205 4.537751 TCTCTCTTCTGTACAGGGGTATG 58.462 47.826 22.48 9.64 0.00 2.39
205 206 4.883021 TCTCTCTTCTGTACAGGGGTAT 57.117 45.455 22.48 0.00 0.00 2.73
206 207 4.570079 CCTTCTCTCTTCTGTACAGGGGTA 60.570 50.000 22.48 0.00 0.00 3.69
207 208 3.436243 CTTCTCTCTTCTGTACAGGGGT 58.564 50.000 22.48 0.00 0.00 4.95
208 209 2.763448 CCTTCTCTCTTCTGTACAGGGG 59.237 54.545 22.48 14.82 0.00 4.79
209 210 2.167487 GCCTTCTCTCTTCTGTACAGGG 59.833 54.545 22.48 15.16 0.00 4.45
210 211 2.828520 TGCCTTCTCTCTTCTGTACAGG 59.171 50.000 22.48 7.88 0.00 4.00
211 212 4.527509 TTGCCTTCTCTCTTCTGTACAG 57.472 45.455 17.17 17.17 0.00 2.74
212 213 4.955811 TTTGCCTTCTCTCTTCTGTACA 57.044 40.909 0.00 0.00 0.00 2.90
213 214 5.057149 TGTTTTGCCTTCTCTCTTCTGTAC 58.943 41.667 0.00 0.00 0.00 2.90
214 215 5.290493 TGTTTTGCCTTCTCTCTTCTGTA 57.710 39.130 0.00 0.00 0.00 2.74
215 216 4.156455 TGTTTTGCCTTCTCTCTTCTGT 57.844 40.909 0.00 0.00 0.00 3.41
216 217 5.458891 CATTGTTTTGCCTTCTCTCTTCTG 58.541 41.667 0.00 0.00 0.00 3.02
217 218 4.022503 GCATTGTTTTGCCTTCTCTCTTCT 60.023 41.667 0.00 0.00 36.60 2.85
218 219 4.233005 GCATTGTTTTGCCTTCTCTCTTC 58.767 43.478 0.00 0.00 36.60 2.87
219 220 3.304928 CGCATTGTTTTGCCTTCTCTCTT 60.305 43.478 0.00 0.00 39.52 2.85
220 221 2.227388 CGCATTGTTTTGCCTTCTCTCT 59.773 45.455 0.00 0.00 39.52 3.10
221 222 2.589014 CGCATTGTTTTGCCTTCTCTC 58.411 47.619 0.00 0.00 39.52 3.20
222 223 1.336240 GCGCATTGTTTTGCCTTCTCT 60.336 47.619 0.30 0.00 39.52 3.10
223 224 1.063031 GCGCATTGTTTTGCCTTCTC 58.937 50.000 0.30 0.00 39.52 2.87
224 225 0.388659 TGCGCATTGTTTTGCCTTCT 59.611 45.000 5.66 0.00 39.52 2.85
225 226 0.508213 GTGCGCATTGTTTTGCCTTC 59.492 50.000 15.91 0.00 39.52 3.46
226 227 0.879839 GGTGCGCATTGTTTTGCCTT 60.880 50.000 15.91 0.00 39.52 4.35
227 228 1.300853 GGTGCGCATTGTTTTGCCT 60.301 52.632 15.91 0.00 39.52 4.75
228 229 0.038709 TAGGTGCGCATTGTTTTGCC 60.039 50.000 15.91 7.44 39.52 4.52
229 230 1.777101 TTAGGTGCGCATTGTTTTGC 58.223 45.000 15.91 0.00 39.29 3.68
230 231 4.143137 GGAAATTAGGTGCGCATTGTTTTG 60.143 41.667 15.91 0.00 0.00 2.44
231 232 3.993736 GGAAATTAGGTGCGCATTGTTTT 59.006 39.130 15.91 10.57 0.00 2.43
232 233 3.006323 TGGAAATTAGGTGCGCATTGTTT 59.994 39.130 15.91 10.95 0.00 2.83
233 234 2.560542 TGGAAATTAGGTGCGCATTGTT 59.439 40.909 15.91 2.08 0.00 2.83
234 235 2.164219 CTGGAAATTAGGTGCGCATTGT 59.836 45.455 15.91 3.49 0.00 2.71
235 236 2.423185 TCTGGAAATTAGGTGCGCATTG 59.577 45.455 15.91 0.00 0.00 2.82
236 237 2.722094 TCTGGAAATTAGGTGCGCATT 58.278 42.857 15.91 8.14 0.00 3.56
237 238 2.418368 TCTGGAAATTAGGTGCGCAT 57.582 45.000 15.91 0.00 0.00 4.73
238 239 2.418368 ATCTGGAAATTAGGTGCGCA 57.582 45.000 5.66 5.66 0.00 6.09
239 240 4.574828 TCTTTATCTGGAAATTAGGTGCGC 59.425 41.667 0.00 0.00 0.00 6.09
240 241 6.677781 TTCTTTATCTGGAAATTAGGTGCG 57.322 37.500 0.00 0.00 0.00 5.34
241 242 8.056407 ACTTTCTTTATCTGGAAATTAGGTGC 57.944 34.615 0.00 0.00 32.15 5.01
247 248 9.898152 CCTCTCTACTTTCTTTATCTGGAAATT 57.102 33.333 0.00 0.00 32.15 1.82
248 249 7.990314 GCCTCTCTACTTTCTTTATCTGGAAAT 59.010 37.037 0.00 0.00 32.15 2.17
249 250 7.038302 TGCCTCTCTACTTTCTTTATCTGGAAA 60.038 37.037 0.00 0.00 0.00 3.13
250 251 6.440647 TGCCTCTCTACTTTCTTTATCTGGAA 59.559 38.462 0.00 0.00 0.00 3.53
251 252 5.958380 TGCCTCTCTACTTTCTTTATCTGGA 59.042 40.000 0.00 0.00 0.00 3.86
252 253 6.227298 TGCCTCTCTACTTTCTTTATCTGG 57.773 41.667 0.00 0.00 0.00 3.86
253 254 8.553459 TTTTGCCTCTCTACTTTCTTTATCTG 57.447 34.615 0.00 0.00 0.00 2.90
261 262 9.670719 GCATTATTATTTTGCCTCTCTACTTTC 57.329 33.333 0.00 0.00 0.00 2.62
262 263 9.413734 AGCATTATTATTTTGCCTCTCTACTTT 57.586 29.630 0.00 0.00 37.07 2.66
263 264 8.986929 AGCATTATTATTTTGCCTCTCTACTT 57.013 30.769 0.00 0.00 37.07 2.24
282 283 9.890629 AACTTCAGTTCAACTCATATAGCATTA 57.109 29.630 0.00 0.00 31.64 1.90
283 284 8.798859 AACTTCAGTTCAACTCATATAGCATT 57.201 30.769 0.00 0.00 31.64 3.56
284 285 9.319143 GTAACTTCAGTTCAACTCATATAGCAT 57.681 33.333 0.00 0.00 39.31 3.79
285 286 8.531982 AGTAACTTCAGTTCAACTCATATAGCA 58.468 33.333 0.00 0.00 39.31 3.49
286 287 8.934507 AGTAACTTCAGTTCAACTCATATAGC 57.065 34.615 0.00 0.00 39.31 2.97
289 290 9.778741 TCAAAGTAACTTCAGTTCAACTCATAT 57.221 29.630 0.00 0.00 39.31 1.78
290 291 9.261180 CTCAAAGTAACTTCAGTTCAACTCATA 57.739 33.333 0.00 0.00 39.31 2.15
291 292 7.254932 GCTCAAAGTAACTTCAGTTCAACTCAT 60.255 37.037 0.00 0.00 39.31 2.90
292 293 6.037172 GCTCAAAGTAACTTCAGTTCAACTCA 59.963 38.462 0.00 0.00 39.31 3.41
293 294 6.258947 AGCTCAAAGTAACTTCAGTTCAACTC 59.741 38.462 0.00 0.00 39.31 3.01
294 295 6.116126 AGCTCAAAGTAACTTCAGTTCAACT 58.884 36.000 0.00 0.00 39.31 3.16
295 296 6.364945 AGCTCAAAGTAACTTCAGTTCAAC 57.635 37.500 0.00 0.00 39.31 3.18
296 297 5.527582 GGAGCTCAAAGTAACTTCAGTTCAA 59.472 40.000 17.19 0.00 39.31 2.69
297 298 5.057149 GGAGCTCAAAGTAACTTCAGTTCA 58.943 41.667 17.19 0.00 39.31 3.18
298 299 4.452795 GGGAGCTCAAAGTAACTTCAGTTC 59.547 45.833 17.19 0.00 39.31 3.01
299 300 4.141482 TGGGAGCTCAAAGTAACTTCAGTT 60.141 41.667 17.19 0.00 41.73 3.16
300 301 3.391296 TGGGAGCTCAAAGTAACTTCAGT 59.609 43.478 17.19 0.00 0.00 3.41
301 302 3.748568 GTGGGAGCTCAAAGTAACTTCAG 59.251 47.826 17.19 0.00 0.00 3.02
302 303 3.135712 TGTGGGAGCTCAAAGTAACTTCA 59.864 43.478 17.19 0.00 0.00 3.02
303 304 3.498777 GTGTGGGAGCTCAAAGTAACTTC 59.501 47.826 17.19 0.00 0.00 3.01
304 305 3.477530 GTGTGGGAGCTCAAAGTAACTT 58.522 45.455 17.19 0.00 0.00 2.66
305 306 2.224548 GGTGTGGGAGCTCAAAGTAACT 60.225 50.000 17.19 0.00 0.00 2.24
306 307 2.152016 GGTGTGGGAGCTCAAAGTAAC 58.848 52.381 17.19 5.57 0.00 2.50
307 308 1.771854 TGGTGTGGGAGCTCAAAGTAA 59.228 47.619 17.19 0.00 0.00 2.24
308 309 1.429930 TGGTGTGGGAGCTCAAAGTA 58.570 50.000 17.19 0.00 0.00 2.24
309 310 0.550914 TTGGTGTGGGAGCTCAAAGT 59.449 50.000 17.19 0.00 0.00 2.66
310 311 1.610522 CTTTGGTGTGGGAGCTCAAAG 59.389 52.381 17.19 11.32 38.51 2.77
311 312 1.214175 TCTTTGGTGTGGGAGCTCAAA 59.786 47.619 17.19 5.22 0.00 2.69
312 313 0.843309 TCTTTGGTGTGGGAGCTCAA 59.157 50.000 17.19 0.00 0.00 3.02
313 314 0.843309 TTCTTTGGTGTGGGAGCTCA 59.157 50.000 17.19 0.00 0.00 4.26
314 315 1.239347 GTTCTTTGGTGTGGGAGCTC 58.761 55.000 4.71 4.71 0.00 4.09
315 316 0.535102 CGTTCTTTGGTGTGGGAGCT 60.535 55.000 0.00 0.00 0.00 4.09
316 317 0.818040 ACGTTCTTTGGTGTGGGAGC 60.818 55.000 0.00 0.00 0.00 4.70
317 318 1.675552 AACGTTCTTTGGTGTGGGAG 58.324 50.000 0.00 0.00 0.00 4.30
318 319 2.018515 GAAACGTTCTTTGGTGTGGGA 58.981 47.619 0.00 0.00 0.00 4.37
319 320 1.066454 GGAAACGTTCTTTGGTGTGGG 59.934 52.381 0.00 0.00 0.00 4.61
320 321 1.066454 GGGAAACGTTCTTTGGTGTGG 59.934 52.381 0.00 0.00 0.00 4.17
321 322 1.746220 TGGGAAACGTTCTTTGGTGTG 59.254 47.619 0.00 0.00 0.00 3.82
322 323 2.131776 TGGGAAACGTTCTTTGGTGT 57.868 45.000 0.00 0.00 0.00 4.16
323 324 3.119280 AGTTTGGGAAACGTTCTTTGGTG 60.119 43.478 0.00 0.00 45.88 4.17
324 325 3.093814 AGTTTGGGAAACGTTCTTTGGT 58.906 40.909 0.00 0.00 45.88 3.67
325 326 3.129638 TCAGTTTGGGAAACGTTCTTTGG 59.870 43.478 0.00 0.00 45.88 3.28
326 327 4.102649 GTCAGTTTGGGAAACGTTCTTTG 58.897 43.478 0.00 0.00 45.88 2.77
327 328 3.181504 CGTCAGTTTGGGAAACGTTCTTT 60.182 43.478 0.00 0.00 45.88 2.52
328 329 2.353579 CGTCAGTTTGGGAAACGTTCTT 59.646 45.455 0.00 0.00 45.88 2.52
329 330 1.937899 CGTCAGTTTGGGAAACGTTCT 59.062 47.619 0.00 0.00 45.88 3.01
330 331 1.935199 TCGTCAGTTTGGGAAACGTTC 59.065 47.619 0.00 0.00 45.88 3.95
331 332 2.027003 TCGTCAGTTTGGGAAACGTT 57.973 45.000 0.00 0.00 45.88 3.99
332 333 1.871039 CATCGTCAGTTTGGGAAACGT 59.129 47.619 0.00 0.00 45.88 3.99
333 334 1.399727 GCATCGTCAGTTTGGGAAACG 60.400 52.381 0.00 0.00 45.88 3.60
334 335 1.606668 TGCATCGTCAGTTTGGGAAAC 59.393 47.619 0.00 0.00 41.69 2.78
335 336 1.879380 CTGCATCGTCAGTTTGGGAAA 59.121 47.619 0.00 0.00 0.00 3.13
336 337 1.071542 TCTGCATCGTCAGTTTGGGAA 59.928 47.619 0.00 0.00 35.63 3.97
337 338 0.684535 TCTGCATCGTCAGTTTGGGA 59.315 50.000 0.00 0.00 35.63 4.37
338 339 1.081892 CTCTGCATCGTCAGTTTGGG 58.918 55.000 0.00 0.00 35.63 4.12
339 340 2.084610 TCTCTGCATCGTCAGTTTGG 57.915 50.000 0.00 0.00 35.63 3.28
340 341 4.212004 TCTTTTCTCTGCATCGTCAGTTTG 59.788 41.667 0.00 0.00 35.63 2.93
341 342 4.380531 TCTTTTCTCTGCATCGTCAGTTT 58.619 39.130 0.00 0.00 35.63 2.66
342 343 3.995199 TCTTTTCTCTGCATCGTCAGTT 58.005 40.909 0.00 0.00 35.63 3.16
343 344 3.667497 TCTTTTCTCTGCATCGTCAGT 57.333 42.857 0.00 0.00 35.63 3.41
344 345 4.091220 GTCTTCTTTTCTCTGCATCGTCAG 59.909 45.833 0.00 0.00 35.46 3.51
345 346 3.990469 GTCTTCTTTTCTCTGCATCGTCA 59.010 43.478 0.00 0.00 0.00 4.35
346 347 3.990469 TGTCTTCTTTTCTCTGCATCGTC 59.010 43.478 0.00 0.00 0.00 4.20
347 348 3.743396 GTGTCTTCTTTTCTCTGCATCGT 59.257 43.478 0.00 0.00 0.00 3.73
348 349 3.742882 TGTGTCTTCTTTTCTCTGCATCG 59.257 43.478 0.00 0.00 0.00 3.84
349 350 4.993584 TCTGTGTCTTCTTTTCTCTGCATC 59.006 41.667 0.00 0.00 0.00 3.91
350 351 4.965814 TCTGTGTCTTCTTTTCTCTGCAT 58.034 39.130 0.00 0.00 0.00 3.96
351 352 4.406648 TCTGTGTCTTCTTTTCTCTGCA 57.593 40.909 0.00 0.00 0.00 4.41
352 353 5.938438 AATCTGTGTCTTCTTTTCTCTGC 57.062 39.130 0.00 0.00 0.00 4.26
353 354 8.152309 AGAAAATCTGTGTCTTCTTTTCTCTG 57.848 34.615 0.00 0.00 40.35 3.35
356 357 9.487790 CTAGAGAAAATCTGTGTCTTCTTTTCT 57.512 33.333 7.97 7.97 44.51 2.52
357 358 9.267084 ACTAGAGAAAATCTGTGTCTTCTTTTC 57.733 33.333 0.00 0.00 39.20 2.29
358 359 9.267084 GACTAGAGAAAATCTGTGTCTTCTTTT 57.733 33.333 0.00 0.00 39.20 2.27
359 360 8.646900 AGACTAGAGAAAATCTGTGTCTTCTTT 58.353 33.333 0.00 0.00 44.01 2.52
360 361 8.189119 AGACTAGAGAAAATCTGTGTCTTCTT 57.811 34.615 0.00 0.00 44.01 2.52
361 362 7.775053 AGACTAGAGAAAATCTGTGTCTTCT 57.225 36.000 0.00 0.00 44.01 2.85
364 365 7.296628 ACAAGACTAGAGAAAATCTGTGTCT 57.703 36.000 0.00 8.54 46.18 3.41
365 366 7.653713 TGAACAAGACTAGAGAAAATCTGTGTC 59.346 37.037 0.00 0.00 40.31 3.67
366 367 7.500992 TGAACAAGACTAGAGAAAATCTGTGT 58.499 34.615 0.00 0.00 39.20 3.72
367 368 7.953158 TGAACAAGACTAGAGAAAATCTGTG 57.047 36.000 0.00 0.00 39.20 3.66
368 369 7.442666 GGTTGAACAAGACTAGAGAAAATCTGT 59.557 37.037 0.00 0.00 39.20 3.41
369 370 7.359598 CGGTTGAACAAGACTAGAGAAAATCTG 60.360 40.741 0.00 0.00 39.20 2.90
370 371 6.647067 CGGTTGAACAAGACTAGAGAAAATCT 59.353 38.462 0.00 0.00 42.47 2.40
371 372 6.618805 GCGGTTGAACAAGACTAGAGAAAATC 60.619 42.308 0.00 0.00 0.00 2.17
372 373 5.179555 GCGGTTGAACAAGACTAGAGAAAAT 59.820 40.000 0.00 0.00 0.00 1.82
373 374 4.510340 GCGGTTGAACAAGACTAGAGAAAA 59.490 41.667 0.00 0.00 0.00 2.29
374 375 4.056050 GCGGTTGAACAAGACTAGAGAAA 58.944 43.478 0.00 0.00 0.00 2.52
375 376 3.069016 TGCGGTTGAACAAGACTAGAGAA 59.931 43.478 0.00 0.00 0.00 2.87
376 377 2.626266 TGCGGTTGAACAAGACTAGAGA 59.374 45.455 0.00 0.00 0.00 3.10
377 378 3.026630 TGCGGTTGAACAAGACTAGAG 57.973 47.619 0.00 0.00 0.00 2.43
378 379 3.006430 TCATGCGGTTGAACAAGACTAGA 59.994 43.478 0.00 0.00 0.00 2.43
379 380 3.325870 TCATGCGGTTGAACAAGACTAG 58.674 45.455 0.00 0.00 0.00 2.57
1531 1913 6.673106 TGAGCGTCTCAAGATTACTCATATC 58.327 40.000 7.02 0.00 37.57 1.63
1632 2014 8.593945 TTTGCCCAGAAAGATTATTGTTAGAT 57.406 30.769 0.00 0.00 0.00 1.98
1653 2035 5.147162 CAACTTAGTTCTCGTGGAATTTGC 58.853 41.667 0.00 0.00 36.24 3.68
1654 2036 5.238650 ACCAACTTAGTTCTCGTGGAATTTG 59.761 40.000 7.00 0.00 36.24 2.32
1659 2041 5.733620 ATAACCAACTTAGTTCTCGTGGA 57.266 39.130 7.00 0.00 0.00 4.02
1663 2045 5.408604 ACTGCAATAACCAACTTAGTTCTCG 59.591 40.000 0.00 0.00 0.00 4.04
1665 2047 6.016276 CCAACTGCAATAACCAACTTAGTTCT 60.016 38.462 0.00 0.00 0.00 3.01
1669 2051 5.705441 TCTCCAACTGCAATAACCAACTTAG 59.295 40.000 0.00 0.00 0.00 2.18
1672 2054 4.098914 TCTCCAACTGCAATAACCAACT 57.901 40.909 0.00 0.00 0.00 3.16
1675 2057 4.574674 AGATCTCCAACTGCAATAACCA 57.425 40.909 0.00 0.00 0.00 3.67
1677 2059 7.930865 AGATCTAAGATCTCCAACTGCAATAAC 59.069 37.037 0.00 0.00 0.00 1.89
1681 2063 5.451103 CGAGATCTAAGATCTCCAACTGCAA 60.451 44.000 18.58 0.00 40.99 4.08
1682 2064 4.037327 CGAGATCTAAGATCTCCAACTGCA 59.963 45.833 18.58 0.00 40.99 4.41
1683 2065 4.277174 TCGAGATCTAAGATCTCCAACTGC 59.723 45.833 18.58 0.00 40.99 4.40
1684 2066 6.573664 ATCGAGATCTAAGATCTCCAACTG 57.426 41.667 18.58 9.90 40.99 3.16
1687 2069 6.241645 TGCTATCGAGATCTAAGATCTCCAA 58.758 40.000 14.33 11.86 40.99 3.53
1689 2071 6.150307 TGTTGCTATCGAGATCTAAGATCTCC 59.850 42.308 14.33 10.10 40.99 3.71
1691 2073 7.537715 CATGTTGCTATCGAGATCTAAGATCT 58.462 38.462 14.33 0.00 0.00 2.75
1692 2074 6.253298 GCATGTTGCTATCGAGATCTAAGATC 59.747 42.308 14.33 0.00 40.96 2.75
1694 2076 5.465051 GCATGTTGCTATCGAGATCTAAGA 58.535 41.667 0.00 0.00 40.96 2.10
1709 2091 4.022849 GGATGGAACCTATTAGCATGTTGC 60.023 45.833 0.00 0.00 45.46 4.17
1712 2094 3.721575 TGGGATGGAACCTATTAGCATGT 59.278 43.478 0.00 0.00 0.00 3.21
1713 2095 4.371624 TGGGATGGAACCTATTAGCATG 57.628 45.455 0.00 0.00 0.00 4.06
1758 2359 2.224209 ACGAAGGTACAAGGTTGTGAGG 60.224 50.000 5.59 0.00 42.31 3.86
1779 2380 4.440826 TTGCCTAGAAAGTTGGTTACCA 57.559 40.909 0.00 0.00 0.00 3.25
1782 2383 6.071984 TGGAATTTGCCTAGAAAGTTGGTTA 58.928 36.000 0.00 0.00 0.00 2.85
1795 2396 5.635120 ACTTAGTTCTCTTGGAATTTGCCT 58.365 37.500 0.00 0.00 36.24 4.75
1807 2408 6.534634 ACTGCAATAACCAACTTAGTTCTCT 58.465 36.000 0.00 0.00 0.00 3.10
1816 2417 4.098914 TCTCCAACTGCAATAACCAACT 57.901 40.909 0.00 0.00 0.00 3.16
1824 2425 6.259608 CGAGATTTAAGATCTCCAACTGCAAT 59.740 38.462 15.81 0.00 40.99 3.56
1833 2434 7.148641 TGTTGCTATCGAGATTTAAGATCTCC 58.851 38.462 15.81 7.42 40.99 3.71
1865 2466 5.073144 CCTAAGCTATTTGGGATGGAACCTA 59.927 44.000 0.00 0.00 39.69 3.08
1881 2482 7.001674 TGAGGTTTGTCAAATTTCCTAAGCTA 58.998 34.615 0.40 2.43 0.00 3.32
1885 2486 7.262048 GTTGTGAGGTTTGTCAAATTTCCTAA 58.738 34.615 0.40 0.00 0.00 2.69
1890 2491 5.675684 AGGTTGTGAGGTTTGTCAAATTT 57.324 34.783 0.40 0.00 0.00 1.82
1902 2503 3.485463 TGAAGGTACAAGGTTGTGAGG 57.515 47.619 5.59 0.00 42.31 3.86
1921 2522 2.231235 GCCCAGAAAGTTGGTTACCATG 59.769 50.000 4.38 0.00 36.45 3.66
1924 2525 1.989706 TGCCCAGAAAGTTGGTTACC 58.010 50.000 0.00 0.00 36.45 2.85
1981 2583 3.311596 GTGTTGTACCAAAGCGAGAACTT 59.688 43.478 0.00 0.00 0.00 2.66
1983 2585 2.610374 TGTGTTGTACCAAAGCGAGAAC 59.390 45.455 0.00 0.00 0.00 3.01
1986 2588 2.210116 AGTGTGTTGTACCAAAGCGAG 58.790 47.619 0.00 0.00 0.00 5.03
1993 2595 4.490899 AACCTGTTAGTGTGTTGTACCA 57.509 40.909 0.00 0.00 0.00 3.25
1995 2597 6.293244 GGATGAAACCTGTTAGTGTGTTGTAC 60.293 42.308 0.00 0.00 0.00 2.90
1996 2598 5.761234 GGATGAAACCTGTTAGTGTGTTGTA 59.239 40.000 0.00 0.00 0.00 2.41
2015 2617 7.234371 TCAAATTTCCTATGTTGTTTGGGATGA 59.766 33.333 0.00 0.00 0.00 2.92
2067 2669 7.039714 GGGATGTGTCTAGAAATTTGGTTTTCT 60.040 37.037 0.00 4.97 45.48 2.52
2068 2670 7.039714 AGGGATGTGTCTAGAAATTTGGTTTTC 60.040 37.037 0.00 0.00 36.13 2.29
2070 2672 6.314917 AGGGATGTGTCTAGAAATTTGGTTT 58.685 36.000 0.00 0.00 0.00 3.27
2083 2685 3.772025 CCTAGTTCTTGAGGGATGTGTCT 59.228 47.826 0.00 0.00 0.00 3.41
2127 2729 3.249080 GTGCGTTACTACCAAGCTTCAAA 59.751 43.478 0.00 0.00 0.00 2.69
2131 2733 2.833631 AGTGCGTTACTACCAAGCTT 57.166 45.000 0.00 0.00 38.04 3.74
2137 2739 3.505836 GACCAGTTAGTGCGTTACTACC 58.494 50.000 1.86 0.00 41.48 3.18
2141 2743 1.001181 TGGGACCAGTTAGTGCGTTAC 59.999 52.381 0.00 0.00 0.00 2.50
2142 2744 1.340088 TGGGACCAGTTAGTGCGTTA 58.660 50.000 0.00 0.00 0.00 3.18
2146 2748 0.107165 GGGATGGGACCAGTTAGTGC 60.107 60.000 0.00 0.00 0.00 4.40
2158 4853 2.754012 TCTAGGCAATTTGGGATGGG 57.246 50.000 0.00 0.00 0.00 4.00
2170 4865 6.374333 GTGAGTTTGGTCAAATTATCTAGGCA 59.626 38.462 0.00 0.00 32.36 4.75
2173 4868 9.994432 GATTGTGAGTTTGGTCAAATTATCTAG 57.006 33.333 0.00 0.00 32.36 2.43
2178 4873 6.015519 CCCAGATTGTGAGTTTGGTCAAATTA 60.016 38.462 0.00 0.00 32.36 1.40
2201 4896 6.373495 AGAAAGTTGGTTGTCGTAAATATCCC 59.627 38.462 0.00 0.00 0.00 3.85
2212 5051 3.013921 TGTGTCCAGAAAGTTGGTTGTC 58.986 45.455 0.00 0.00 39.35 3.18
2252 5091 6.295575 CCACAACTCCTCTAAGTTCTCAAGAT 60.296 42.308 0.00 0.00 37.38 2.40
2253 5092 5.011125 CCACAACTCCTCTAAGTTCTCAAGA 59.989 44.000 0.00 0.00 37.38 3.02
2258 5097 3.243724 AGCCACAACTCCTCTAAGTTCT 58.756 45.455 0.00 0.00 37.38 3.01
2276 5115 0.941542 TAGTGTGTTGTCGCAAAGCC 59.058 50.000 0.00 0.00 35.78 4.35
2281 5120 1.134640 ACCTGTTAGTGTGTTGTCGCA 60.135 47.619 0.00 0.00 0.00 5.10
2311 5150 8.177119 AGTTTTGTCAAATTTCCTATGCTGTA 57.823 30.769 0.00 0.00 0.00 2.74
2313 5152 7.115378 GTGAGTTTTGTCAAATTTCCTATGCTG 59.885 37.037 0.00 0.00 0.00 4.41
2400 5383 3.118920 GCTCCAAGTCCTCTAAGTTCTCC 60.119 52.174 0.00 0.00 0.00 3.71
2434 5418 0.464554 GGGATGGAACCTGCTAGTGC 60.465 60.000 0.00 0.00 40.20 4.40
2440 5424 0.890683 CTGTTTGGGATGGAACCTGC 59.109 55.000 0.00 0.00 0.00 4.85
2485 5613 2.288666 GTTGCTGTCAAGACACAAGGA 58.711 47.619 14.19 0.06 36.21 3.36
2492 5620 3.378427 AGAAAGTTGGTTGCTGTCAAGAC 59.622 43.478 0.00 0.00 31.93 3.01
2493 5621 3.378112 CAGAAAGTTGGTTGCTGTCAAGA 59.622 43.478 0.00 0.00 31.93 3.02
2528 5656 5.828871 AGTTCTCAAGGTAGCCTAGTTCTA 58.171 41.667 0.00 0.00 31.13 2.10
2538 5666 5.986501 AGTCCACTAAGTTCTCAAGGTAG 57.013 43.478 0.00 0.00 0.00 3.18
2544 5816 6.672266 AGATTCAAGTCCACTAAGTTCTCA 57.328 37.500 0.00 0.00 0.00 3.27
2546 5818 8.423906 TCTAAGATTCAAGTCCACTAAGTTCT 57.576 34.615 0.00 0.00 0.00 3.01
2555 5827 8.999431 GTGTATTGTTTCTAAGATTCAAGTCCA 58.001 33.333 0.00 0.00 0.00 4.02
2571 5843 6.433093 GGATGGAACCTGTTAGTGTATTGTTT 59.567 38.462 0.00 0.00 0.00 2.83
2577 5849 3.522759 TGGGATGGAACCTGTTAGTGTA 58.477 45.455 0.00 0.00 0.00 2.90
2602 5874 3.431415 AGTTGGTCAAATTTCCTAGGCC 58.569 45.455 2.96 0.00 0.00 5.19
2619 5892 6.483307 TGTCAAGATACAAGGTTGAGAAGTTG 59.517 38.462 0.00 0.00 30.94 3.16
2628 5901 3.821033 GGTTGCTGTCAAGATACAAGGTT 59.179 43.478 0.00 0.00 31.93 3.50
2637 5910 3.378112 CAGAAAGTTGGTTGCTGTCAAGA 59.622 43.478 0.00 0.00 31.93 3.02
2646 5919 5.567138 GGATATGTCCAGAAAGTTGGTTG 57.433 43.478 3.16 0.00 44.42 3.77
2661 5934 4.456662 ACCTAGTTCTCGAGGGATATGT 57.543 45.455 13.56 3.59 40.11 2.29
2662 5935 6.887545 AGATAACCTAGTTCTCGAGGGATATG 59.112 42.308 13.56 3.00 40.11 1.78
2664 5937 6.451292 AGATAACCTAGTTCTCGAGGGATA 57.549 41.667 13.56 4.91 40.11 2.59
2667 5940 4.888239 TCAAGATAACCTAGTTCTCGAGGG 59.112 45.833 13.56 7.89 40.11 4.30
2677 5950 9.280174 CTCCTCTAAGTACTCAAGATAACCTAG 57.720 40.741 0.00 0.00 0.00 3.02
2686 5959 5.715070 CACCAACTCCTCTAAGTACTCAAG 58.285 45.833 0.00 0.00 0.00 3.02
2688 5961 3.510360 GCACCAACTCCTCTAAGTACTCA 59.490 47.826 0.00 0.00 0.00 3.41
2690 5963 3.780626 AGCACCAACTCCTCTAAGTACT 58.219 45.455 0.00 0.00 0.00 2.73
2691 5964 4.538746 AAGCACCAACTCCTCTAAGTAC 57.461 45.455 0.00 0.00 0.00 2.73
2692 5965 4.159879 GCTAAGCACCAACTCCTCTAAGTA 59.840 45.833 0.00 0.00 0.00 2.24
2701 5974 1.194772 GTTGTCGCTAAGCACCAACTC 59.805 52.381 0.00 0.00 36.52 3.01
2703 5976 0.237498 GGTTGTCGCTAAGCACCAAC 59.763 55.000 0.00 0.00 37.76 3.77
2707 5980 1.226746 AGTTGGTTGTCGCTAAGCAC 58.773 50.000 3.41 0.00 37.74 4.40
2709 5982 3.349488 AAAAGTTGGTTGTCGCTAAGC 57.651 42.857 0.00 0.00 0.00 3.09
2759 6032 7.209471 AGAGACAAGTACTCTAAGTTGACTG 57.791 40.000 0.00 0.00 42.03 3.51
2760 6033 7.826918 AAGAGACAAGTACTCTAAGTTGACT 57.173 36.000 0.00 0.00 42.85 3.41
2838 6111 6.951198 TCTGGCCAAAGTCCAATTTATAAAGA 59.049 34.615 7.01 0.00 32.41 2.52
3018 7788 4.173924 GAGCAGCAGGAGGAGCCC 62.174 72.222 0.00 0.00 37.37 5.19
3019 7789 4.173924 GGAGCAGCAGGAGGAGCC 62.174 72.222 0.00 0.00 0.00 4.70
3020 7790 3.082701 AGGAGCAGCAGGAGGAGC 61.083 66.667 0.00 0.00 0.00 4.70
3021 7791 1.381599 AGAGGAGCAGCAGGAGGAG 60.382 63.158 0.00 0.00 0.00 3.69
3022 7792 1.381056 GAGAGGAGCAGCAGGAGGA 60.381 63.158 0.00 0.00 0.00 3.71
3023 7793 2.433994 GGAGAGGAGCAGCAGGAGG 61.434 68.421 0.00 0.00 0.00 4.30
3024 7794 2.433994 GGGAGAGGAGCAGCAGGAG 61.434 68.421 0.00 0.00 0.00 3.69
3025 7795 2.364842 GGGAGAGGAGCAGCAGGA 60.365 66.667 0.00 0.00 0.00 3.86
3026 7796 2.365370 AGGGAGAGGAGCAGCAGG 60.365 66.667 0.00 0.00 0.00 4.85
3027 7797 2.433994 GGAGGGAGAGGAGCAGCAG 61.434 68.421 0.00 0.00 0.00 4.24
3069 7860 1.306141 TCAGAGATGGGTCCGGCTT 60.306 57.895 0.00 0.00 0.00 4.35
3072 7863 1.753078 TCGTCAGAGATGGGTCCGG 60.753 63.158 0.00 0.00 0.00 5.14
3073 7864 1.032657 AGTCGTCAGAGATGGGTCCG 61.033 60.000 0.00 0.00 0.00 4.79
3074 7865 0.741915 GAGTCGTCAGAGATGGGTCC 59.258 60.000 0.00 0.00 0.00 4.46
3075 7866 0.741915 GGAGTCGTCAGAGATGGGTC 59.258 60.000 0.00 0.00 0.00 4.46
3076 7867 0.039764 TGGAGTCGTCAGAGATGGGT 59.960 55.000 0.00 0.00 0.00 4.51
3077 7868 0.743688 CTGGAGTCGTCAGAGATGGG 59.256 60.000 0.00 0.00 34.36 4.00
3078 7869 0.102120 GCTGGAGTCGTCAGAGATGG 59.898 60.000 0.99 0.00 34.36 3.51
3079 7870 1.065401 GAGCTGGAGTCGTCAGAGATG 59.935 57.143 0.00 0.00 34.36 2.90
3080 7871 1.388547 GAGCTGGAGTCGTCAGAGAT 58.611 55.000 0.00 0.00 34.36 2.75
3081 7872 0.678366 GGAGCTGGAGTCGTCAGAGA 60.678 60.000 0.00 0.00 34.36 3.10
3082 7873 0.962855 TGGAGCTGGAGTCGTCAGAG 60.963 60.000 0.00 0.00 34.36 3.35
3083 7874 1.074951 TGGAGCTGGAGTCGTCAGA 59.925 57.895 0.00 0.00 34.36 3.27
3084 7875 1.214062 GTGGAGCTGGAGTCGTCAG 59.786 63.158 0.00 0.00 35.49 3.51
3085 7876 2.276116 GGTGGAGCTGGAGTCGTCA 61.276 63.158 0.00 0.00 0.00 4.35
3086 7877 2.574399 GGTGGAGCTGGAGTCGTC 59.426 66.667 0.00 0.00 0.00 4.20
3087 7878 3.374402 CGGTGGAGCTGGAGTCGT 61.374 66.667 0.00 0.00 0.00 4.34
3088 7879 4.803426 GCGGTGGAGCTGGAGTCG 62.803 72.222 0.00 0.00 0.00 4.18
3144 7944 2.664835 ATAGGAGGAGGAGGCGGTGG 62.665 65.000 0.00 0.00 0.00 4.61
3145 7945 1.152440 ATAGGAGGAGGAGGCGGTG 60.152 63.158 0.00 0.00 0.00 4.94
3146 7946 1.152440 CATAGGAGGAGGAGGCGGT 60.152 63.158 0.00 0.00 0.00 5.68
3149 7949 0.902516 ATCGCATAGGAGGAGGAGGC 60.903 60.000 0.00 0.00 0.00 4.70
3162 7962 2.119029 TCGGTGAGGACGATCGCAT 61.119 57.895 16.60 5.65 35.12 4.73
3256 8213 2.826287 CCTCGCAGGAGAGCTCGA 60.826 66.667 8.37 0.00 43.27 4.04
3259 8216 3.137459 CGTCCTCGCAGGAGAGCT 61.137 66.667 5.28 0.00 46.90 4.09
3309 8266 3.319198 TCGGCCCTGTCCTTGGAC 61.319 66.667 12.54 12.54 0.00 4.02
3344 8325 3.771160 CGAGGTTGGAGGACCCGG 61.771 72.222 0.00 0.00 40.73 5.73
3391 8372 0.173481 CCGGAGCATTGAGAACGAGA 59.827 55.000 0.00 0.00 0.00 4.04
3460 8501 3.443045 CGCTGGGGTTGCACATCC 61.443 66.667 0.00 0.00 0.00 3.51
3480 8521 3.123620 CAGAAGCAGTGCCCGAGC 61.124 66.667 12.58 0.00 40.48 5.03
3505 8550 3.364460 TCCCTAAGCAAAGCAGCATTA 57.636 42.857 0.00 0.00 36.85 1.90
3506 8551 2.220653 TCCCTAAGCAAAGCAGCATT 57.779 45.000 0.00 0.00 36.85 3.56
3507 8552 1.821136 GTTCCCTAAGCAAAGCAGCAT 59.179 47.619 0.00 0.00 36.85 3.79
3508 8553 1.247567 GTTCCCTAAGCAAAGCAGCA 58.752 50.000 0.00 0.00 36.85 4.41
3509 8554 0.169009 CGTTCCCTAAGCAAAGCAGC 59.831 55.000 0.00 0.00 0.00 5.25
3510 8555 0.804989 CCGTTCCCTAAGCAAAGCAG 59.195 55.000 0.00 0.00 0.00 4.24
3511 8556 0.608035 CCCGTTCCCTAAGCAAAGCA 60.608 55.000 0.00 0.00 0.00 3.91
3512 8557 0.322187 TCCCGTTCCCTAAGCAAAGC 60.322 55.000 0.00 0.00 0.00 3.51
3513 8558 2.084546 CTTCCCGTTCCCTAAGCAAAG 58.915 52.381 0.00 0.00 0.00 2.77
3514 8559 1.700739 TCTTCCCGTTCCCTAAGCAAA 59.299 47.619 0.00 0.00 0.00 3.68
3515 8560 1.278127 CTCTTCCCGTTCCCTAAGCAA 59.722 52.381 0.00 0.00 0.00 3.91
3536 8606 1.413767 CCTGATCCACGCGAAGAACG 61.414 60.000 15.93 4.49 45.66 3.95
3537 8607 0.389948 ACCTGATCCACGCGAAGAAC 60.390 55.000 15.93 8.33 0.00 3.01
3540 8610 2.456119 GCACCTGATCCACGCGAAG 61.456 63.158 15.93 4.40 0.00 3.79
3552 8622 1.338973 AGCACATTGAAACTGCACCTG 59.661 47.619 0.00 0.00 33.06 4.00
3553 8623 1.696063 AGCACATTGAAACTGCACCT 58.304 45.000 0.00 0.00 33.06 4.00
3554 8624 2.514205 AAGCACATTGAAACTGCACC 57.486 45.000 0.00 0.00 33.06 5.01
3556 8626 8.830201 ATTATAAAAAGCACATTGAAACTGCA 57.170 26.923 0.00 0.00 33.06 4.41
3557 8627 9.532697 CAATTATAAAAAGCACATTGAAACTGC 57.467 29.630 0.00 0.00 0.00 4.40
3596 9128 5.645929 TCAATAGCGGTCTCATTAGCAAAAA 59.354 36.000 0.00 0.00 0.00 1.94
3597 9129 5.182487 TCAATAGCGGTCTCATTAGCAAAA 58.818 37.500 0.00 0.00 0.00 2.44
3598 9130 4.765273 TCAATAGCGGTCTCATTAGCAAA 58.235 39.130 0.00 0.00 0.00 3.68
3599 9131 4.099419 TCTCAATAGCGGTCTCATTAGCAA 59.901 41.667 0.00 0.00 0.00 3.91
3600 9132 3.636764 TCTCAATAGCGGTCTCATTAGCA 59.363 43.478 0.00 0.00 0.00 3.49
3601 9133 4.244425 TCTCAATAGCGGTCTCATTAGC 57.756 45.455 0.00 0.00 0.00 3.09
3609 9141 2.622064 AACCCATCTCAATAGCGGTC 57.378 50.000 0.00 0.00 0.00 4.79
3628 9160 4.037446 AGGTGAGCGAGTTAAATGCAAAAA 59.963 37.500 0.00 0.00 0.00 1.94
3712 9250 1.896660 GCTTCCTTCGGTGCCACAA 60.897 57.895 0.00 0.00 0.00 3.33
3757 9296 1.573108 CTACATGTCTCCCAGGTGGT 58.427 55.000 0.00 0.00 38.77 4.16
3811 9351 2.325583 ACACACAACACCCACACTAG 57.674 50.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.