Multiple sequence alignment - TraesCS7A01G001800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G001800 chr7A 100.000 2821 0 0 1 2821 1317821 1315001 0.000000e+00 5210.0
1 TraesCS7A01G001800 chr7A 86.716 271 11 10 1 262 211061777 211061523 7.700000e-71 278.0
2 TraesCS7A01G001800 chr7A 86.447 273 13 11 1 264 512541035 512541292 7.700000e-71 278.0
3 TraesCS7A01G001800 chr7A 81.333 300 38 13 2536 2821 164820913 164821208 7.860000e-56 228.0
4 TraesCS7A01G001800 chr7A 93.333 75 3 2 1858 1931 551799492 551799565 2.970000e-20 110.0
5 TraesCS7A01G001800 chr4A 91.161 1878 103 27 6 1853 743981432 743983276 0.000000e+00 2490.0
6 TraesCS7A01G001800 chr4A 91.168 351 31 0 600 950 410040154 410040504 7.070000e-131 477.0
7 TraesCS7A01G001800 chr4A 92.513 187 10 2 2037 2222 743983501 743983684 5.990000e-67 265.0
8 TraesCS7A01G001800 chr4A 93.333 75 3 2 1858 1931 92200752 92200825 2.970000e-20 110.0
9 TraesCS7A01G001800 chr4A 93.333 75 3 2 1858 1931 639469974 639470047 2.970000e-20 110.0
10 TraesCS7A01G001800 chr4A 83.186 113 13 5 2416 2524 157874255 157874145 6.430000e-17 99.0
11 TraesCS7A01G001800 chr7D 88.433 2049 113 44 1 1992 1324367 1326348 0.000000e+00 2357.0
12 TraesCS7A01G001800 chr6B 90.397 302 28 1 601 902 616722482 616722782 2.040000e-106 396.0
13 TraesCS7A01G001800 chr6B 91.273 275 24 0 601 875 39921455 39921729 2.650000e-100 375.0
14 TraesCS7A01G001800 chr6B 89.831 118 12 0 600 717 76736503 76736386 4.870000e-33 152.0
15 TraesCS7A01G001800 chr6B 91.860 86 6 1 188 273 91949849 91949933 4.940000e-23 119.0
16 TraesCS7A01G001800 chr6B 90.698 86 7 1 188 273 76736583 76736499 2.300000e-21 113.0
17 TraesCS7A01G001800 chr7B 90.333 300 28 1 601 900 424959651 424959949 2.630000e-105 392.0
18 TraesCS7A01G001800 chr7B 91.057 246 22 0 630 875 624782708 624782953 1.620000e-87 333.0
19 TraesCS7A01G001800 chr7B 83.929 112 12 6 2416 2524 202993251 202993143 4.970000e-18 102.0
20 TraesCS7A01G001800 chr7B 90.476 63 1 3 68 130 150374746 150374689 8.380000e-11 78.7
21 TraesCS7A01G001800 chr3A 88.742 302 28 2 601 902 606614543 606614248 5.740000e-97 364.0
22 TraesCS7A01G001800 chr3A 87.589 282 16 8 2 273 234646624 234646352 2.730000e-80 309.0
23 TraesCS7A01G001800 chr3A 87.234 282 17 7 2 273 606614812 606614540 1.270000e-78 303.0
24 TraesCS7A01G001800 chr3A 87.912 273 10 3 1 264 688932325 688932067 1.640000e-77 300.0
25 TraesCS7A01G001800 chr3A 93.333 75 3 2 1858 1931 409872459 409872386 2.970000e-20 110.0
26 TraesCS7A01G001800 chr3A 93.333 75 3 2 1858 1931 437839197 437839270 2.970000e-20 110.0
27 TraesCS7A01G001800 chr3A 93.333 75 3 2 1858 1931 526118073 526118146 2.970000e-20 110.0
28 TraesCS7A01G001800 chr6A 89.167 240 26 0 600 839 283880986 283880747 1.640000e-77 300.0
29 TraesCS7A01G001800 chr6A 86.879 282 19 11 1 273 283881254 283880982 1.640000e-77 300.0
30 TraesCS7A01G001800 chr6A 93.333 75 4 1 1858 1931 376138138 376138064 2.970000e-20 110.0
31 TraesCS7A01G001800 chr6A 97.826 46 1 0 906 951 283880739 283880694 2.330000e-11 80.5
32 TraesCS7A01G001800 chr2B 85.034 294 31 10 2536 2821 667127674 667127386 1.280000e-73 287.0
33 TraesCS7A01G001800 chr2A 86.081 273 13 16 1 264 107526625 107526881 1.290000e-68 270.0
34 TraesCS7A01G001800 chr2A 85.714 273 14 16 1 264 107735265 107735521 5.990000e-67 265.0
35 TraesCS7A01G001800 chr2A 93.333 75 3 2 1858 1931 460378132 460378059 2.970000e-20 110.0
36 TraesCS7A01G001800 chr2A 84.906 106 13 2 224 329 678718059 678718161 1.380000e-18 104.0
37 TraesCS7A01G001800 chr5B 83.729 295 35 12 2535 2821 13502922 13502633 1.670000e-67 267.0
38 TraesCS7A01G001800 chr5B 84.821 112 11 6 2416 2524 122836674 122836566 1.070000e-19 108.0
39 TraesCS7A01G001800 chr3D 84.028 288 35 9 2536 2821 433159857 433160135 1.670000e-67 267.0
40 TraesCS7A01G001800 chr3D 83.566 286 29 13 2542 2821 349640394 349640667 4.660000e-63 252.0
41 TraesCS7A01G001800 chr3D 81.379 290 36 10 2537 2821 562531187 562530911 1.320000e-53 220.0
42 TraesCS7A01G001800 chr3D 77.828 221 39 10 2307 2524 433159306 433159519 8.200000e-26 128.0
43 TraesCS7A01G001800 chr3D 82.883 111 15 4 2416 2524 268070412 268070304 2.310000e-16 97.1
44 TraesCS7A01G001800 chr3B 83.103 290 44 5 2534 2821 817599226 817598940 2.790000e-65 259.0
45 TraesCS7A01G001800 chr3B 90.698 86 7 1 188 273 164321764 164321680 2.300000e-21 113.0
46 TraesCS7A01G001800 chr3B 90.698 86 7 1 188 273 690614603 690614687 2.300000e-21 113.0
47 TraesCS7A01G001800 chr3B 90.698 86 7 1 188 273 690625675 690625759 2.300000e-21 113.0
48 TraesCS7A01G001800 chr3B 100.000 42 0 0 915 956 31400199 31400240 8.380000e-11 78.7
49 TraesCS7A01G001800 chr1A 82.818 291 41 7 2536 2821 531021936 531022222 4.660000e-63 252.0
50 TraesCS7A01G001800 chr1A 93.333 75 3 2 1858 1931 172803658 172803731 2.970000e-20 110.0
51 TraesCS7A01G001800 chr6D 82.550 298 37 12 2534 2821 308923906 308923614 6.030000e-62 248.0
52 TraesCS7A01G001800 chr1B 78.866 388 57 15 1318 1693 27283507 27283881 3.630000e-59 239.0
53 TraesCS7A01G001800 chr1B 83.884 242 25 7 1317 1554 27281674 27281905 4.730000e-53 219.0
54 TraesCS7A01G001800 chr1D 83.721 129 13 6 2468 2590 40169817 40169691 6.390000e-22 115.0
55 TraesCS7A01G001800 chr1D 76.050 238 34 9 2307 2524 475824530 475824764 4.970000e-18 102.0
56 TraesCS7A01G001800 chr5D 82.727 110 17 2 2416 2524 20758893 20759001 2.310000e-16 97.1
57 TraesCS7A01G001800 chr5D 87.805 82 3 2 1913 1990 131956747 131956669 3.870000e-14 89.8
58 TraesCS7A01G001800 chr5D 84.270 89 2 4 1913 1992 55287159 55287244 3.010000e-10 76.8
59 TraesCS7A01G001800 chr2D 80.292 137 19 6 2416 2549 649502849 649502980 2.310000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G001800 chr7A 1315001 1317821 2820 True 5210.000000 5210 100.000000 1 2821 1 chr7A.!!$R1 2820
1 TraesCS7A01G001800 chr4A 743981432 743983684 2252 False 1377.500000 2490 91.837000 6 2222 2 chr4A.!!$F4 2216
2 TraesCS7A01G001800 chr7D 1324367 1326348 1981 False 2357.000000 2357 88.433000 1 1992 1 chr7D.!!$F1 1991
3 TraesCS7A01G001800 chr3A 606614248 606614812 564 True 333.500000 364 87.988000 2 902 2 chr3A.!!$R4 900
4 TraesCS7A01G001800 chr6A 283880694 283881254 560 True 226.833333 300 91.290667 1 951 3 chr6A.!!$R2 950
5 TraesCS7A01G001800 chr1B 27281674 27283881 2207 False 229.000000 239 81.375000 1317 1693 2 chr1B.!!$F1 376

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
85 87 0.464554 GCCCAGCCAATCTCCTACAC 60.465 60.0 0.0 0.0 0.0 2.90 F
186 219 0.532115 GGCCACCCTAAGCAAATGTG 59.468 55.0 0.0 0.0 0.0 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1763 3664 0.450184 GCCAACCACGCGTCATTAAT 59.55 50.000 9.86 0.0 0.00 1.40 R
2034 4029 1.200252 GCTGCTCCATCATGCATCATC 59.80 52.381 0.00 0.0 38.59 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 85 0.548510 AAGCCCAGCCAATCTCCTAC 59.451 55.000 0.00 0.00 0.00 3.18
84 86 0.621571 AGCCCAGCCAATCTCCTACA 60.622 55.000 0.00 0.00 0.00 2.74
85 87 0.464554 GCCCAGCCAATCTCCTACAC 60.465 60.000 0.00 0.00 0.00 2.90
86 88 1.207791 CCCAGCCAATCTCCTACACT 58.792 55.000 0.00 0.00 0.00 3.55
87 89 1.134280 CCCAGCCAATCTCCTACACTG 60.134 57.143 0.00 0.00 0.00 3.66
94 96 3.449018 CCAATCTCCTACACTGCACTACT 59.551 47.826 0.00 0.00 0.00 2.57
101 103 3.181495 CCTACACTGCACTACTCTACAGC 60.181 52.174 0.00 0.00 33.35 4.40
186 219 0.532115 GGCCACCCTAAGCAAATGTG 59.468 55.000 0.00 0.00 0.00 3.21
264 297 8.986477 TTTGCTTAATCTTTCTCATTTTAGCC 57.014 30.769 0.00 0.00 0.00 3.93
284 317 4.589374 AGCCTACTAATCAATACCGCTTCT 59.411 41.667 0.00 0.00 0.00 2.85
285 318 4.924462 GCCTACTAATCAATACCGCTTCTC 59.076 45.833 0.00 0.00 0.00 2.87
287 320 4.650754 ACTAATCAATACCGCTTCTCGT 57.349 40.909 0.00 0.00 36.19 4.18
328 361 7.275920 AGATCTAATCCTCACGCTTAAACAAT 58.724 34.615 0.00 0.00 0.00 2.71
336 369 6.150976 TCCTCACGCTTAAACAATCAATCAAT 59.849 34.615 0.00 0.00 0.00 2.57
367 400 5.721960 AGTTGGGCTGAAGAGATCTAAACTA 59.278 40.000 0.00 0.00 0.00 2.24
387 420 0.613260 CTGGCCTGGTACTTGTAGCA 59.387 55.000 3.32 11.42 0.00 3.49
396 429 4.968259 TGGTACTTGTAGCAGTGTTCAAT 58.032 39.130 8.38 0.00 0.00 2.57
443 476 3.374988 CGCACCTAATCAAGATTCTTGCA 59.625 43.478 19.53 10.33 33.26 4.08
481 514 2.156917 ACCAGAACATGCACTGTGATG 58.843 47.619 12.86 13.90 38.39 3.07
518 551 6.228258 CCACATGTGGTGTTAACTAGTAACT 58.772 40.000 32.94 0.00 46.44 2.24
528 561 7.488471 GGTGTTAACTAGTAACTAGTGCTGATG 59.512 40.741 7.22 0.00 45.28 3.07
640 674 3.340814 TTTGCTGTCAGAAGGGATCTC 57.659 47.619 3.32 0.00 35.73 2.75
662 696 3.532542 GATAGGTTGCAACTGGGAGTAC 58.467 50.000 27.64 9.58 0.00 2.73
671 705 2.240493 ACTGGGAGTACAATATGCGC 57.760 50.000 0.00 0.00 0.00 6.09
727 761 3.618690 AGATCCACTTCAGCTTGGTAC 57.381 47.619 2.14 0.00 34.19 3.34
849 883 0.798389 GCCGATTCTTTTCGCTTGGC 60.798 55.000 0.00 0.00 37.80 4.52
850 884 0.804989 CCGATTCTTTTCGCTTGGCT 59.195 50.000 0.00 0.00 37.80 4.75
889 929 5.922715 TGGTCCCTATCTATAAAGGCCATA 58.077 41.667 5.01 0.00 0.00 2.74
961 1001 3.182341 AGCTTCAGACATCTCATCAGC 57.818 47.619 0.00 0.00 0.00 4.26
965 1005 4.741235 GCTTCAGACATCTCATCAGCTGAT 60.741 45.833 23.75 23.75 33.03 2.90
1164 1211 2.435586 CTCCTCAAGTGGGCTGCG 60.436 66.667 0.00 0.00 0.00 5.18
1167 1214 2.749044 CTCAAGTGGGCTGCGCAT 60.749 61.111 22.44 4.75 0.00 4.73
1246 1293 8.549338 AATCACTAGTACTTGGTTTCTTTAGC 57.451 34.615 0.00 0.00 0.00 3.09
1252 1299 7.299246 AGTACTTGGTTTCTTTAGCTAGTGA 57.701 36.000 0.00 0.00 34.41 3.41
1257 1304 7.335422 ACTTGGTTTCTTTAGCTAGTGATGATG 59.665 37.037 0.00 0.00 32.02 3.07
1406 1456 1.019278 CAGCGCCGGTATCAAAGTGT 61.019 55.000 2.29 0.00 0.00 3.55
1562 3453 4.724602 GAGCAGCAGACGCCGTCA 62.725 66.667 20.65 0.00 39.83 4.35
1712 3608 7.339466 TGTGAGTAGCTACAATCTGTCTATGAA 59.661 37.037 25.28 0.00 0.00 2.57
1746 3647 9.890629 AACATGATGTGTAATTAGTGACAGTAT 57.109 29.630 0.00 0.00 41.14 2.12
1763 3664 2.159156 AGTATTCCGTGCATTAGCGTGA 60.159 45.455 0.00 0.00 46.23 4.35
1777 3684 3.779303 CGTGATTAATGACGCGTGG 57.221 52.632 20.70 0.00 35.70 4.94
1782 3689 0.450184 ATTAATGACGCGTGGTTGGC 59.550 50.000 20.70 0.06 0.00 4.52
1784 3691 0.604243 TAATGACGCGTGGTTGGCTT 60.604 50.000 20.70 1.55 0.00 4.35
1856 3789 2.022195 CATTGCTGAAGATGGTGGAGG 58.978 52.381 0.00 0.00 0.00 4.30
1871 3804 3.192212 GGTGGAGGCAAGATTTGAGAAAG 59.808 47.826 0.00 0.00 0.00 2.62
1897 3881 4.439968 TGATGACTCATCAAGCTAGCAAG 58.560 43.478 18.83 8.87 46.17 4.01
1898 3882 3.204526 ATGACTCATCAAGCTAGCAAGC 58.795 45.455 18.83 0.00 42.28 4.01
1900 3884 6.977541 GATGACTCATCAAGCTAGCAAGCTG 61.978 48.000 18.83 10.43 46.88 4.24
1945 3940 5.539842 AGTTAGTTAGGGAGGGAGCTAAAT 58.460 41.667 0.00 0.00 0.00 1.40
1961 3956 5.862845 AGCTAAATAGTAGCAGATGCATGT 58.137 37.500 2.46 0.00 45.16 3.21
1962 3957 5.699915 AGCTAAATAGTAGCAGATGCATGTG 59.300 40.000 19.07 19.07 45.16 3.21
1963 3958 4.825546 AAATAGTAGCAGATGCATGTGC 57.174 40.909 34.77 34.77 46.32 4.57
1992 3987 5.321102 TCTATTCTAGACTGATGAGGAGCC 58.679 45.833 0.00 0.00 0.00 4.70
1993 3988 3.678965 TTCTAGACTGATGAGGAGCCT 57.321 47.619 0.00 0.00 0.00 4.58
1994 3989 2.942804 TCTAGACTGATGAGGAGCCTG 58.057 52.381 0.00 0.00 0.00 4.85
1995 3990 2.511637 TCTAGACTGATGAGGAGCCTGA 59.488 50.000 0.00 0.00 0.00 3.86
1996 3991 2.475339 AGACTGATGAGGAGCCTGAT 57.525 50.000 0.00 0.00 0.00 2.90
1997 3992 2.040939 AGACTGATGAGGAGCCTGATG 58.959 52.381 0.00 0.00 0.00 3.07
1998 3993 0.469070 ACTGATGAGGAGCCTGATGC 59.531 55.000 0.00 0.00 41.71 3.91
1999 3994 0.468648 CTGATGAGGAGCCTGATGCA 59.531 55.000 0.00 0.00 44.83 3.96
2000 3995 1.072489 CTGATGAGGAGCCTGATGCAT 59.928 52.381 0.00 0.00 44.83 3.96
2001 3996 1.202770 TGATGAGGAGCCTGATGCATG 60.203 52.381 2.46 0.00 44.83 4.06
2002 3997 1.071857 GATGAGGAGCCTGATGCATGA 59.928 52.381 2.46 0.00 44.83 3.07
2003 3998 1.137697 TGAGGAGCCTGATGCATGAT 58.862 50.000 2.46 0.00 44.83 2.45
2004 3999 1.071857 TGAGGAGCCTGATGCATGATC 59.928 52.381 2.46 0.00 44.83 2.92
2005 4000 1.071857 GAGGAGCCTGATGCATGATCA 59.928 52.381 2.46 0.00 44.83 2.92
2006 4001 1.493446 AGGAGCCTGATGCATGATCAA 59.507 47.619 2.46 0.00 40.73 2.57
2007 4002 1.880675 GGAGCCTGATGCATGATCAAG 59.119 52.381 2.46 0.00 40.73 3.02
2008 4003 1.880675 GAGCCTGATGCATGATCAAGG 59.119 52.381 2.46 1.47 40.73 3.61
2009 4004 1.493446 AGCCTGATGCATGATCAAGGA 59.507 47.619 2.46 3.76 40.73 3.36
2010 4005 1.880675 GCCTGATGCATGATCAAGGAG 59.119 52.381 2.46 0.00 40.73 3.69
2011 4006 2.486727 GCCTGATGCATGATCAAGGAGA 60.487 50.000 2.46 0.00 40.73 3.71
2018 4013 4.767478 TGCATGATCAAGGAGAAGAGAAG 58.233 43.478 0.00 0.00 0.00 2.85
2029 4024 7.884877 TCAAGGAGAAGAGAAGCAATTAATCAA 59.115 33.333 0.00 0.00 0.00 2.57
2030 4025 7.862512 AGGAGAAGAGAAGCAATTAATCAAG 57.137 36.000 0.00 0.00 0.00 3.02
2031 4026 6.827762 AGGAGAAGAGAAGCAATTAATCAAGG 59.172 38.462 0.00 0.00 0.00 3.61
2032 4027 6.825721 GGAGAAGAGAAGCAATTAATCAAGGA 59.174 38.462 0.00 0.00 0.00 3.36
2034 4029 6.827762 AGAAGAGAAGCAATTAATCAAGGAGG 59.172 38.462 0.00 0.00 0.00 4.30
2207 4214 9.573166 TTGTTCCTTTTTGAGATAAAGAGATGA 57.427 29.630 0.00 0.00 35.16 2.92
2224 4231 8.523915 AAGAGATGATTACATGGTTTATTGCA 57.476 30.769 0.00 0.00 36.82 4.08
2225 4232 8.523915 AGAGATGATTACATGGTTTATTGCAA 57.476 30.769 0.00 0.00 36.82 4.08
2226 4233 8.408601 AGAGATGATTACATGGTTTATTGCAAC 58.591 33.333 0.00 0.00 36.82 4.17
2227 4234 8.065473 AGATGATTACATGGTTTATTGCAACA 57.935 30.769 0.00 0.00 36.82 3.33
2228 4235 8.192774 AGATGATTACATGGTTTATTGCAACAG 58.807 33.333 0.00 0.00 36.82 3.16
2229 4236 6.629128 TGATTACATGGTTTATTGCAACAGG 58.371 36.000 0.00 0.00 0.00 4.00
2230 4237 3.317603 ACATGGTTTATTGCAACAGGC 57.682 42.857 0.00 0.00 45.13 4.85
2247 4254 3.931907 AGGCATAATGACTGGTAGCAA 57.068 42.857 0.00 0.00 31.94 3.91
2248 4255 3.545703 AGGCATAATGACTGGTAGCAAC 58.454 45.455 0.00 0.00 31.94 4.17
2249 4256 2.287915 GGCATAATGACTGGTAGCAACG 59.712 50.000 0.00 0.00 0.00 4.10
2250 4257 2.287915 GCATAATGACTGGTAGCAACGG 59.712 50.000 0.00 0.00 0.00 4.44
2251 4258 3.531538 CATAATGACTGGTAGCAACGGT 58.468 45.455 0.00 0.00 0.00 4.83
2252 4259 2.094762 AATGACTGGTAGCAACGGTC 57.905 50.000 5.99 5.99 32.88 4.79
2253 4260 1.267121 ATGACTGGTAGCAACGGTCT 58.733 50.000 12.33 0.00 33.21 3.85
2254 4261 1.913778 TGACTGGTAGCAACGGTCTA 58.086 50.000 12.33 0.00 33.21 2.59
2255 4262 1.816835 TGACTGGTAGCAACGGTCTAG 59.183 52.381 12.33 0.00 33.21 2.43
2256 4263 0.531200 ACTGGTAGCAACGGTCTAGC 59.469 55.000 0.00 3.21 35.67 3.42
2257 4264 0.530744 CTGGTAGCAACGGTCTAGCA 59.469 55.000 10.12 10.12 40.80 3.49
2258 4265 0.245539 TGGTAGCAACGGTCTAGCAC 59.754 55.000 7.45 1.56 38.96 4.40
2259 4266 0.531200 GGTAGCAACGGTCTAGCACT 59.469 55.000 4.84 0.00 35.33 4.40
2260 4267 1.067071 GGTAGCAACGGTCTAGCACTT 60.067 52.381 4.84 0.00 35.33 3.16
2261 4268 2.612221 GGTAGCAACGGTCTAGCACTTT 60.612 50.000 4.84 0.00 35.33 2.66
2262 4269 1.797025 AGCAACGGTCTAGCACTTTC 58.203 50.000 3.59 0.00 0.00 2.62
2263 4270 1.344763 AGCAACGGTCTAGCACTTTCT 59.655 47.619 3.59 0.00 0.00 2.52
2264 4271 2.143925 GCAACGGTCTAGCACTTTCTT 58.856 47.619 0.00 0.00 0.00 2.52
2265 4272 2.548480 GCAACGGTCTAGCACTTTCTTT 59.452 45.455 0.00 0.00 0.00 2.52
2266 4273 3.744426 GCAACGGTCTAGCACTTTCTTTA 59.256 43.478 0.00 0.00 0.00 1.85
2267 4274 4.377124 GCAACGGTCTAGCACTTTCTTTAC 60.377 45.833 0.00 0.00 0.00 2.01
2268 4275 3.572584 ACGGTCTAGCACTTTCTTTACG 58.427 45.455 0.00 0.00 0.00 3.18
2269 4276 2.921754 CGGTCTAGCACTTTCTTTACGG 59.078 50.000 0.00 0.00 0.00 4.02
2270 4277 2.671888 GGTCTAGCACTTTCTTTACGGC 59.328 50.000 0.00 0.00 0.00 5.68
2271 4278 2.671888 GTCTAGCACTTTCTTTACGGCC 59.328 50.000 0.00 0.00 0.00 6.13
2272 4279 2.007608 CTAGCACTTTCTTTACGGCCC 58.992 52.381 0.00 0.00 0.00 5.80
2273 4280 0.400594 AGCACTTTCTTTACGGCCCT 59.599 50.000 0.00 0.00 0.00 5.19
2274 4281 0.521735 GCACTTTCTTTACGGCCCTG 59.478 55.000 0.00 0.00 0.00 4.45
2275 4282 1.892209 CACTTTCTTTACGGCCCTGT 58.108 50.000 0.00 0.00 0.00 4.00
2276 4283 2.227194 CACTTTCTTTACGGCCCTGTT 58.773 47.619 0.00 0.00 0.00 3.16
2277 4284 2.031157 CACTTTCTTTACGGCCCTGTTG 60.031 50.000 0.00 0.00 0.00 3.33
2278 4285 0.955905 TTTCTTTACGGCCCTGTTGC 59.044 50.000 0.00 0.00 0.00 4.17
2279 4286 0.179015 TTCTTTACGGCCCTGTTGCA 60.179 50.000 0.00 0.00 0.00 4.08
2280 4287 0.887387 TCTTTACGGCCCTGTTGCAC 60.887 55.000 0.00 0.00 0.00 4.57
2281 4288 1.862602 CTTTACGGCCCTGTTGCACC 61.863 60.000 0.00 0.00 0.00 5.01
2287 4294 2.520741 CCCTGTTGCACCGGGTTT 60.521 61.111 8.49 0.00 37.79 3.27
2288 4295 2.561037 CCCTGTTGCACCGGGTTTC 61.561 63.158 8.49 0.00 37.79 2.78
2289 4296 2.637025 CTGTTGCACCGGGTTTCG 59.363 61.111 6.32 0.00 38.88 3.46
2290 4297 1.890041 CTGTTGCACCGGGTTTCGA 60.890 57.895 6.32 0.00 42.43 3.71
2291 4298 2.113131 CTGTTGCACCGGGTTTCGAC 62.113 60.000 6.32 3.28 42.43 4.20
2292 4299 1.890510 GTTGCACCGGGTTTCGACT 60.891 57.895 6.32 0.00 42.43 4.18
2293 4300 1.890041 TTGCACCGGGTTTCGACTG 60.890 57.895 6.32 0.00 42.43 3.51
2294 4301 2.280592 GCACCGGGTTTCGACTGT 60.281 61.111 6.32 0.00 42.43 3.55
2295 4302 1.890510 GCACCGGGTTTCGACTGTT 60.891 57.895 6.32 0.00 42.43 3.16
2296 4303 1.441732 GCACCGGGTTTCGACTGTTT 61.442 55.000 6.32 0.00 42.43 2.83
2297 4304 1.018910 CACCGGGTTTCGACTGTTTT 58.981 50.000 6.32 0.00 42.43 2.43
2298 4305 1.003223 CACCGGGTTTCGACTGTTTTC 60.003 52.381 6.32 0.00 42.43 2.29
2299 4306 0.589708 CCGGGTTTCGACTGTTTTCC 59.410 55.000 0.00 0.00 42.43 3.13
2300 4307 1.589803 CGGGTTTCGACTGTTTTCCT 58.410 50.000 0.00 0.00 42.43 3.36
2301 4308 1.944709 CGGGTTTCGACTGTTTTCCTT 59.055 47.619 0.00 0.00 42.43 3.36
2302 4309 2.032290 CGGGTTTCGACTGTTTTCCTTC 60.032 50.000 0.00 0.00 42.43 3.46
2303 4310 3.211865 GGGTTTCGACTGTTTTCCTTCT 58.788 45.455 0.00 0.00 0.00 2.85
2304 4311 3.003378 GGGTTTCGACTGTTTTCCTTCTG 59.997 47.826 0.00 0.00 0.00 3.02
2305 4312 3.626217 GGTTTCGACTGTTTTCCTTCTGT 59.374 43.478 0.00 0.00 0.00 3.41
2306 4313 4.095932 GGTTTCGACTGTTTTCCTTCTGTT 59.904 41.667 0.00 0.00 0.00 3.16
2307 4314 5.295045 GGTTTCGACTGTTTTCCTTCTGTTA 59.705 40.000 0.00 0.00 0.00 2.41
2308 4315 6.419771 GTTTCGACTGTTTTCCTTCTGTTAG 58.580 40.000 0.00 0.00 0.00 2.34
2309 4316 4.056050 TCGACTGTTTTCCTTCTGTTAGC 58.944 43.478 0.00 0.00 0.00 3.09
2310 4317 3.807622 CGACTGTTTTCCTTCTGTTAGCA 59.192 43.478 0.00 0.00 0.00 3.49
2311 4318 4.084328 CGACTGTTTTCCTTCTGTTAGCAG 60.084 45.833 0.00 0.00 43.87 4.24
2319 4326 4.645809 CTGTTAGCAGAAGGGCCC 57.354 61.111 16.46 16.46 45.28 5.80
2320 4327 1.450312 CTGTTAGCAGAAGGGCCCG 60.450 63.158 18.44 2.33 45.28 6.13
2321 4328 2.185310 CTGTTAGCAGAAGGGCCCGT 62.185 60.000 18.44 15.01 45.28 5.28
2322 4329 1.745489 GTTAGCAGAAGGGCCCGTG 60.745 63.158 17.66 16.34 0.00 4.94
2323 4330 3.622060 TTAGCAGAAGGGCCCGTGC 62.622 63.158 29.59 29.59 36.10 5.34
2327 4334 4.265056 AGAAGGGCCCGTGCGTTT 62.265 61.111 17.66 2.26 38.85 3.60
2328 4335 4.038080 GAAGGGCCCGTGCGTTTG 62.038 66.667 17.66 0.00 38.85 2.93
2339 4346 3.637714 GCGTTTGCGACAGGAGAA 58.362 55.556 0.00 0.00 41.33 2.87
2340 4347 1.938861 GCGTTTGCGACAGGAGAAA 59.061 52.632 0.00 0.00 41.33 2.52
2341 4348 0.306533 GCGTTTGCGACAGGAGAAAA 59.693 50.000 0.00 0.00 41.33 2.29
2342 4349 1.268335 GCGTTTGCGACAGGAGAAAAA 60.268 47.619 0.00 0.00 41.33 1.94
2343 4350 2.604614 GCGTTTGCGACAGGAGAAAAAT 60.605 45.455 0.00 0.00 41.33 1.82
2344 4351 3.364565 GCGTTTGCGACAGGAGAAAAATA 60.365 43.478 0.00 0.00 41.33 1.40
2345 4352 4.671766 GCGTTTGCGACAGGAGAAAAATAT 60.672 41.667 0.00 0.00 41.33 1.28
2346 4353 5.446741 GCGTTTGCGACAGGAGAAAAATATA 60.447 40.000 0.00 0.00 41.33 0.86
2347 4354 6.715464 CGTTTGCGACAGGAGAAAAATATAT 58.285 36.000 0.00 0.00 41.33 0.86
2348 4355 6.846283 CGTTTGCGACAGGAGAAAAATATATC 59.154 38.462 0.00 0.00 41.33 1.63
2349 4356 7.465379 CGTTTGCGACAGGAGAAAAATATATCA 60.465 37.037 0.00 0.00 41.33 2.15
2350 4357 8.345565 GTTTGCGACAGGAGAAAAATATATCAT 58.654 33.333 0.00 0.00 0.00 2.45
2351 4358 9.554395 TTTGCGACAGGAGAAAAATATATCATA 57.446 29.630 0.00 0.00 0.00 2.15
2352 4359 9.554395 TTGCGACAGGAGAAAAATATATCATAA 57.446 29.630 0.00 0.00 0.00 1.90
2353 4360 9.725019 TGCGACAGGAGAAAAATATATCATAAT 57.275 29.630 0.00 0.00 0.00 1.28
2367 4374 9.605275 AATATATCATAATCTCCAACGTCCATG 57.395 33.333 0.00 0.00 0.00 3.66
2368 4375 5.551305 ATCATAATCTCCAACGTCCATGA 57.449 39.130 0.00 0.00 0.00 3.07
2369 4376 4.693283 TCATAATCTCCAACGTCCATGAC 58.307 43.478 0.00 0.00 0.00 3.06
2370 4377 2.403252 AATCTCCAACGTCCATGACC 57.597 50.000 0.00 0.00 0.00 4.02
2371 4378 0.541863 ATCTCCAACGTCCATGACCC 59.458 55.000 0.00 0.00 0.00 4.46
2372 4379 1.078426 CTCCAACGTCCATGACCCC 60.078 63.158 0.00 0.00 0.00 4.95
2373 4380 2.435938 CCAACGTCCATGACCCCG 60.436 66.667 0.00 0.00 0.00 5.73
2374 4381 2.345991 CAACGTCCATGACCCCGT 59.654 61.111 0.00 0.00 34.56 5.28
2375 4382 1.302192 CAACGTCCATGACCCCGTT 60.302 57.895 0.00 0.00 43.58 4.44
2376 4383 0.887387 CAACGTCCATGACCCCGTTT 60.887 55.000 0.00 0.00 41.14 3.60
2377 4384 0.179012 AACGTCCATGACCCCGTTTT 60.179 50.000 0.00 0.00 40.27 2.43
2378 4385 0.887387 ACGTCCATGACCCCGTTTTG 60.887 55.000 0.00 0.00 0.00 2.44
2379 4386 1.584495 GTCCATGACCCCGTTTTGC 59.416 57.895 0.00 0.00 0.00 3.68
2380 4387 0.893727 GTCCATGACCCCGTTTTGCT 60.894 55.000 0.00 0.00 0.00 3.91
2381 4388 0.893270 TCCATGACCCCGTTTTGCTG 60.893 55.000 0.00 0.00 0.00 4.41
2382 4389 1.080569 CATGACCCCGTTTTGCTGC 60.081 57.895 0.00 0.00 0.00 5.25
2383 4390 1.228552 ATGACCCCGTTTTGCTGCT 60.229 52.632 0.00 0.00 0.00 4.24
2384 4391 0.827507 ATGACCCCGTTTTGCTGCTT 60.828 50.000 0.00 0.00 0.00 3.91
2385 4392 1.285950 GACCCCGTTTTGCTGCTTC 59.714 57.895 0.00 0.00 0.00 3.86
2386 4393 1.452145 GACCCCGTTTTGCTGCTTCA 61.452 55.000 0.00 0.00 0.00 3.02
2387 4394 1.007387 CCCCGTTTTGCTGCTTCAC 60.007 57.895 0.00 0.00 0.00 3.18
2388 4395 1.007387 CCCGTTTTGCTGCTTCACC 60.007 57.895 0.00 0.00 0.00 4.02
2389 4396 1.370414 CCGTTTTGCTGCTTCACCG 60.370 57.895 0.00 0.00 0.00 4.94
2390 4397 1.646540 CGTTTTGCTGCTTCACCGA 59.353 52.632 0.00 0.00 0.00 4.69
2391 4398 0.384725 CGTTTTGCTGCTTCACCGAG 60.385 55.000 0.00 0.00 0.00 4.63
2392 4399 0.944386 GTTTTGCTGCTTCACCGAGA 59.056 50.000 0.00 0.00 0.00 4.04
2393 4400 1.537202 GTTTTGCTGCTTCACCGAGAT 59.463 47.619 0.00 0.00 0.00 2.75
2394 4401 2.742053 GTTTTGCTGCTTCACCGAGATA 59.258 45.455 0.00 0.00 0.00 1.98
2395 4402 2.988010 TTGCTGCTTCACCGAGATAT 57.012 45.000 0.00 0.00 0.00 1.63
2396 4403 4.400529 TTTGCTGCTTCACCGAGATATA 57.599 40.909 0.00 0.00 0.00 0.86
2397 4404 4.607293 TTGCTGCTTCACCGAGATATAT 57.393 40.909 0.00 0.00 0.00 0.86
2398 4405 4.607293 TGCTGCTTCACCGAGATATATT 57.393 40.909 0.00 0.00 0.00 1.28
2399 4406 5.722021 TGCTGCTTCACCGAGATATATTA 57.278 39.130 0.00 0.00 0.00 0.98
2400 4407 6.286240 TGCTGCTTCACCGAGATATATTAT 57.714 37.500 0.00 0.00 0.00 1.28
2401 4408 6.333416 TGCTGCTTCACCGAGATATATTATC 58.667 40.000 0.00 0.00 0.00 1.75
2402 4409 6.071391 TGCTGCTTCACCGAGATATATTATCA 60.071 38.462 0.00 0.00 0.00 2.15
2403 4410 6.813649 GCTGCTTCACCGAGATATATTATCAA 59.186 38.462 0.00 0.00 0.00 2.57
2404 4411 7.331934 GCTGCTTCACCGAGATATATTATCAAA 59.668 37.037 0.00 0.00 0.00 2.69
2405 4412 9.208022 CTGCTTCACCGAGATATATTATCAAAA 57.792 33.333 0.00 0.00 0.00 2.44
2406 4413 9.725019 TGCTTCACCGAGATATATTATCAAAAT 57.275 29.630 0.00 0.00 0.00 1.82
2437 4444 9.521503 TTCGTGAAATCATGAACAATGTTTTAA 57.478 25.926 12.78 0.00 44.33 1.52
2438 4445 9.521503 TCGTGAAATCATGAACAATGTTTTAAA 57.478 25.926 0.00 0.00 37.99 1.52
2439 4446 9.566624 CGTGAAATCATGAACAATGTTTTAAAC 57.433 29.630 0.00 0.20 37.99 2.01
2445 4452 7.904094 TCATGAACAATGTTTTAAACTTGTGC 58.096 30.769 18.65 17.71 37.56 4.57
2446 4453 7.547019 TCATGAACAATGTTTTAAACTTGTGCA 59.453 29.630 23.00 23.00 39.79 4.57
2447 4454 7.054855 TGAACAATGTTTTAAACTTGTGCAC 57.945 32.000 19.85 10.75 35.28 4.57
2448 4455 6.646653 TGAACAATGTTTTAAACTTGTGCACA 59.353 30.769 17.42 17.42 35.28 4.57
2449 4456 7.332926 TGAACAATGTTTTAAACTTGTGCACAT 59.667 29.630 22.39 8.28 35.28 3.21
2450 4457 8.709386 AACAATGTTTTAAACTTGTGCACATA 57.291 26.923 22.39 7.12 34.94 2.29
2451 4458 8.885494 ACAATGTTTTAAACTTGTGCACATAT 57.115 26.923 22.39 9.10 34.11 1.78
2452 4459 9.323985 ACAATGTTTTAAACTTGTGCACATATT 57.676 25.926 22.39 17.35 34.11 1.28
2455 4462 8.932945 TGTTTTAAACTTGTGCACATATTTGA 57.067 26.923 26.97 20.54 0.00 2.69
2456 4463 9.371136 TGTTTTAAACTTGTGCACATATTTGAA 57.629 25.926 26.97 23.63 0.00 2.69
2461 4468 8.436046 AAACTTGTGCACATATTTGAAATTGT 57.564 26.923 22.39 0.00 0.00 2.71
2462 4469 7.410800 ACTTGTGCACATATTTGAAATTGTG 57.589 32.000 22.39 19.48 41.80 3.33
2463 4470 7.208777 ACTTGTGCACATATTTGAAATTGTGA 58.791 30.769 22.39 13.65 41.50 3.58
2464 4471 7.383029 ACTTGTGCACATATTTGAAATTGTGAG 59.617 33.333 22.39 11.21 41.50 3.51
2465 4472 5.634439 TGTGCACATATTTGAAATTGTGAGC 59.366 36.000 24.09 19.21 41.50 4.26
2466 4473 5.634439 GTGCACATATTTGAAATTGTGAGCA 59.366 36.000 24.09 20.75 41.50 4.26
2467 4474 6.145858 GTGCACATATTTGAAATTGTGAGCAA 59.854 34.615 24.09 11.62 41.50 3.91
2468 4475 6.874664 TGCACATATTTGAAATTGTGAGCAAT 59.125 30.769 24.09 0.40 46.38 3.56
2483 4490 9.985730 ATTGTGAGCAATTTTCTAAAATCAAGA 57.014 25.926 1.36 0.00 42.19 3.02
2484 4491 9.814899 TTGTGAGCAATTTTCTAAAATCAAGAA 57.185 25.926 1.36 0.00 37.62 2.52
2485 4492 9.248291 TGTGAGCAATTTTCTAAAATCAAGAAC 57.752 29.630 1.36 0.65 37.62 3.01
2486 4493 9.248291 GTGAGCAATTTTCTAAAATCAAGAACA 57.752 29.630 1.36 0.00 37.62 3.18
2487 4494 9.985730 TGAGCAATTTTCTAAAATCAAGAACAT 57.014 25.926 1.36 0.00 37.62 2.71
2737 4744 4.589675 AAAAACAGGCCGCCCGGA 62.590 61.111 11.48 0.00 37.50 5.14
2765 4772 3.977244 CCCAAACGGGTGTGCTGC 61.977 66.667 0.00 0.00 39.13 5.25
2766 4773 4.326766 CCAAACGGGTGTGCTGCG 62.327 66.667 0.00 0.00 0.00 5.18
2767 4774 3.582120 CAAACGGGTGTGCTGCGT 61.582 61.111 0.00 0.00 0.00 5.24
2768 4775 3.276846 AAACGGGTGTGCTGCGTC 61.277 61.111 0.00 0.00 0.00 5.19
2769 4776 3.750373 AAACGGGTGTGCTGCGTCT 62.750 57.895 0.00 0.00 0.00 4.18
2770 4777 3.750373 AACGGGTGTGCTGCGTCTT 62.750 57.895 0.00 0.00 0.00 3.01
2771 4778 2.972505 CGGGTGTGCTGCGTCTTT 60.973 61.111 0.00 0.00 0.00 2.52
2772 4779 2.542907 CGGGTGTGCTGCGTCTTTT 61.543 57.895 0.00 0.00 0.00 2.27
2773 4780 1.733526 GGGTGTGCTGCGTCTTTTT 59.266 52.632 0.00 0.00 0.00 1.94
2774 4781 0.317854 GGGTGTGCTGCGTCTTTTTC 60.318 55.000 0.00 0.00 0.00 2.29
2775 4782 0.317854 GGTGTGCTGCGTCTTTTTCC 60.318 55.000 0.00 0.00 0.00 3.13
2776 4783 0.380378 GTGTGCTGCGTCTTTTTCCA 59.620 50.000 0.00 0.00 0.00 3.53
2777 4784 0.662619 TGTGCTGCGTCTTTTTCCAG 59.337 50.000 0.00 0.00 0.00 3.86
2778 4785 4.541020 GCTGCGTCTTTTTCCAGC 57.459 55.556 0.00 0.00 43.10 4.85
2780 4787 3.461843 CTGCGTCTTTTTCCAGCAC 57.538 52.632 0.00 0.00 33.92 4.40
2781 4788 0.384725 CTGCGTCTTTTTCCAGCACG 60.385 55.000 0.00 0.00 33.92 5.34
2782 4789 4.515107 CGTCTTTTTCCAGCACGC 57.485 55.556 0.00 0.00 0.00 5.34
2783 4790 1.646540 CGTCTTTTTCCAGCACGCA 59.353 52.632 0.00 0.00 0.00 5.24
2784 4791 0.384725 CGTCTTTTTCCAGCACGCAG 60.385 55.000 0.00 0.00 0.00 5.18
2785 4792 0.944386 GTCTTTTTCCAGCACGCAGA 59.056 50.000 0.00 0.00 0.00 4.26
2786 4793 1.069636 GTCTTTTTCCAGCACGCAGAG 60.070 52.381 0.00 0.00 0.00 3.35
2787 4794 0.386478 CTTTTTCCAGCACGCAGAGC 60.386 55.000 0.00 0.00 46.67 4.09
2801 4808 2.506444 GCAGAGCGTAGTATAGGAGGT 58.494 52.381 0.00 0.00 0.00 3.85
2802 4809 2.485038 GCAGAGCGTAGTATAGGAGGTC 59.515 54.545 0.00 0.00 0.00 3.85
2803 4810 3.075884 CAGAGCGTAGTATAGGAGGTCC 58.924 54.545 0.00 0.00 0.00 4.46
2804 4811 2.040145 AGAGCGTAGTATAGGAGGTCCC 59.960 54.545 0.00 0.00 36.42 4.46
2813 4820 2.088104 TAGGAGGTCCCTACTGCATG 57.912 55.000 8.42 0.00 45.48 4.06
2814 4821 0.692419 AGGAGGTCCCTACTGCATGG 60.692 60.000 0.00 0.00 45.48 3.66
2815 4822 1.700042 GGAGGTCCCTACTGCATGGG 61.700 65.000 11.96 11.96 44.66 4.00
2816 4823 2.193248 GGTCCCTACTGCATGGGC 59.807 66.667 13.02 9.07 43.04 5.36
2817 4824 2.378634 GGTCCCTACTGCATGGGCT 61.379 63.158 13.02 0.00 43.04 5.19
2818 4825 1.153086 GTCCCTACTGCATGGGCTG 60.153 63.158 13.02 0.00 43.04 4.85
2819 4826 2.194056 CCCTACTGCATGGGCTGG 59.806 66.667 6.64 0.00 42.66 4.85
2820 4827 2.517875 CCTACTGCATGGGCTGGC 60.518 66.667 0.00 0.00 42.66 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 63 0.820226 GGAGATTGGCTGGGCTTTTC 59.180 55.000 0.00 0.00 0.00 2.29
83 85 3.185330 CATGCTGTAGAGTAGTGCAGTG 58.815 50.000 3.69 0.00 37.07 3.66
84 86 2.828520 ACATGCTGTAGAGTAGTGCAGT 59.171 45.455 0.00 0.00 37.07 4.40
85 87 3.119352 TGACATGCTGTAGAGTAGTGCAG 60.119 47.826 0.00 0.00 37.07 4.41
86 88 2.825532 TGACATGCTGTAGAGTAGTGCA 59.174 45.455 0.00 0.00 38.05 4.57
87 89 3.510388 TGACATGCTGTAGAGTAGTGC 57.490 47.619 0.00 0.00 0.00 4.40
94 96 5.859205 ATACTGACATGACATGCTGTAGA 57.141 39.130 15.49 5.42 30.82 2.59
101 103 4.816385 GGGGTTGTATACTGACATGACATG 59.184 45.833 14.02 14.02 0.00 3.21
186 219 1.869767 CTGGAAGTGTGTTCTCTGCAC 59.130 52.381 0.00 0.00 37.37 4.57
264 297 5.625721 CACGAGAAGCGGTATTGATTAGTAG 59.374 44.000 0.00 0.00 46.49 2.57
275 308 1.135489 GTCATCACACGAGAAGCGGTA 60.135 52.381 0.00 0.00 46.49 4.02
328 361 3.306225 GCCCAACTTGCTTGATTGATTGA 60.306 43.478 0.00 0.00 30.42 2.57
336 369 1.133823 TCTTCAGCCCAACTTGCTTGA 60.134 47.619 0.00 0.00 36.81 3.02
367 400 0.613777 GCTACAAGTACCAGGCCAGT 59.386 55.000 5.01 4.23 0.00 4.00
640 674 1.066143 ACTCCCAGTTGCAACCTATCG 60.066 52.381 25.62 13.95 0.00 2.92
662 696 1.195448 GATCAGTTCGGGCGCATATTG 59.805 52.381 10.83 0.00 0.00 1.90
684 718 1.011968 TCGTCGATTTTCGCACCAGG 61.012 55.000 0.00 0.00 40.21 4.45
727 761 1.206610 CACAGATCTCCCACAGGTCAG 59.793 57.143 0.00 0.00 34.14 3.51
737 771 0.107459 GCTTCCCACCACAGATCTCC 60.107 60.000 0.00 0.00 0.00 3.71
769 803 0.911769 ATGAACCGATGCTCAGGGAA 59.088 50.000 0.00 0.00 0.00 3.97
889 929 4.589374 GCTTACTCCCCTGTATCTGTATGT 59.411 45.833 0.00 0.00 0.00 2.29
965 1005 9.473007 CCTCCTCAGAAAGACAGATGATATATA 57.527 37.037 0.00 0.00 0.00 0.86
977 1017 3.436243 TCTCCTTCCTCCTCAGAAAGAC 58.564 50.000 0.00 0.00 0.00 3.01
1200 1247 6.770785 TGATTAATACCTTCCATTTCTTCCCG 59.229 38.462 0.00 0.00 0.00 5.14
1246 1293 3.379240 CTCTTGCGACCATCATCACTAG 58.621 50.000 0.00 0.00 0.00 2.57
1252 1299 0.904649 TGTCCTCTTGCGACCATCAT 59.095 50.000 0.00 0.00 0.00 2.45
1257 1304 3.842869 AAGATGTCCTCTTGCGACC 57.157 52.632 0.00 0.00 42.76 4.79
1268 1315 5.248870 ACACAAGTTCAAACCAAGATGTC 57.751 39.130 0.00 0.00 0.00 3.06
1277 1324 3.807622 TCTGGATCGACACAAGTTCAAAC 59.192 43.478 0.00 0.00 0.00 2.93
1284 1331 1.482182 TCCCATCTGGATCGACACAAG 59.518 52.381 0.00 0.00 38.61 3.16
1391 1441 0.719465 CGTCACACTTTGATACCGGC 59.281 55.000 0.00 0.00 36.32 6.13
1406 1456 4.440987 GAGCTCGCGTCGTCGTCA 62.441 66.667 5.77 0.00 39.49 4.35
1490 1540 1.208358 CGAGTACAGCACCGACGAA 59.792 57.895 0.00 0.00 0.00 3.85
1562 3453 2.120274 TAGTTCCCGTTCCCCCGT 59.880 61.111 0.00 0.00 0.00 5.28
1563 3454 1.829523 TTGTAGTTCCCGTTCCCCCG 61.830 60.000 0.00 0.00 0.00 5.73
1568 3459 2.991866 GCTGTAGTTGTAGTTCCCGTTC 59.008 50.000 0.00 0.00 0.00 3.95
1738 3639 3.194861 GCTAATGCACGGAATACTGTCA 58.805 45.455 0.00 0.00 39.41 3.58
1743 3644 2.198406 TCACGCTAATGCACGGAATAC 58.802 47.619 0.00 0.00 39.64 1.89
1746 3647 1.732941 AATCACGCTAATGCACGGAA 58.267 45.000 0.00 0.00 39.64 4.30
1763 3664 0.450184 GCCAACCACGCGTCATTAAT 59.550 50.000 9.86 0.00 0.00 1.40
1777 3684 5.064579 ACTGCAACAAAATTAACAAGCCAAC 59.935 36.000 0.00 0.00 0.00 3.77
1782 3689 6.091986 ACCACAACTGCAACAAAATTAACAAG 59.908 34.615 0.00 0.00 0.00 3.16
1784 3691 5.349817 CACCACAACTGCAACAAAATTAACA 59.650 36.000 0.00 0.00 0.00 2.41
1856 3789 4.836125 TCACCACTTTCTCAAATCTTGC 57.164 40.909 0.00 0.00 0.00 4.01
1894 3878 8.438676 AGTAATTAACAATACTAGCCAGCTTG 57.561 34.615 0.00 0.00 0.00 4.01
1895 3879 8.487028 AGAGTAATTAACAATACTAGCCAGCTT 58.513 33.333 0.00 0.00 0.00 3.74
1897 3881 9.413048 CTAGAGTAATTAACAATACTAGCCAGC 57.587 37.037 0.00 0.00 0.00 4.85
1945 3940 2.830104 CAGCACATGCATCTGCTACTA 58.170 47.619 26.21 0.00 41.97 1.82
1992 3987 4.704965 TCTTCTCCTTGATCATGCATCAG 58.295 43.478 0.00 0.00 42.76 2.90
1993 3988 4.407945 TCTCTTCTCCTTGATCATGCATCA 59.592 41.667 0.00 0.00 39.99 3.07
1994 3989 4.958509 TCTCTTCTCCTTGATCATGCATC 58.041 43.478 0.00 0.00 0.00 3.91
1995 3990 5.369409 TTCTCTTCTCCTTGATCATGCAT 57.631 39.130 0.00 0.00 0.00 3.96
1996 3991 4.767478 CTTCTCTTCTCCTTGATCATGCA 58.233 43.478 0.00 0.00 0.00 3.96
1997 3992 3.560896 GCTTCTCTTCTCCTTGATCATGC 59.439 47.826 0.00 0.00 0.00 4.06
1998 3993 4.767478 TGCTTCTCTTCTCCTTGATCATG 58.233 43.478 0.00 0.00 0.00 3.07
1999 3994 5.432680 TTGCTTCTCTTCTCCTTGATCAT 57.567 39.130 0.00 0.00 0.00 2.45
2000 3995 4.897509 TTGCTTCTCTTCTCCTTGATCA 57.102 40.909 0.00 0.00 0.00 2.92
2001 3996 7.856145 TTAATTGCTTCTCTTCTCCTTGATC 57.144 36.000 0.00 0.00 0.00 2.92
2002 3997 8.051535 TGATTAATTGCTTCTCTTCTCCTTGAT 58.948 33.333 0.00 0.00 0.00 2.57
2003 3998 7.397221 TGATTAATTGCTTCTCTTCTCCTTGA 58.603 34.615 0.00 0.00 0.00 3.02
2004 3999 7.621428 TGATTAATTGCTTCTCTTCTCCTTG 57.379 36.000 0.00 0.00 0.00 3.61
2005 4000 7.338957 CCTTGATTAATTGCTTCTCTTCTCCTT 59.661 37.037 0.00 0.00 0.00 3.36
2006 4001 6.827762 CCTTGATTAATTGCTTCTCTTCTCCT 59.172 38.462 0.00 0.00 0.00 3.69
2007 4002 6.825721 TCCTTGATTAATTGCTTCTCTTCTCC 59.174 38.462 0.00 0.00 0.00 3.71
2008 4003 7.012232 CCTCCTTGATTAATTGCTTCTCTTCTC 59.988 40.741 0.00 0.00 0.00 2.87
2009 4004 6.827762 CCTCCTTGATTAATTGCTTCTCTTCT 59.172 38.462 0.00 0.00 0.00 2.85
2010 4005 6.825721 TCCTCCTTGATTAATTGCTTCTCTTC 59.174 38.462 0.00 0.00 0.00 2.87
2011 4006 6.725364 TCCTCCTTGATTAATTGCTTCTCTT 58.275 36.000 0.00 0.00 0.00 2.85
2018 4013 5.010314 TGCATCATCCTCCTTGATTAATTGC 59.990 40.000 0.00 0.00 31.50 3.56
2029 4024 2.306219 CTCCATCATGCATCATCCTCCT 59.694 50.000 0.00 0.00 0.00 3.69
2030 4025 2.712709 CTCCATCATGCATCATCCTCC 58.287 52.381 0.00 0.00 0.00 4.30
2031 4026 2.085320 GCTCCATCATGCATCATCCTC 58.915 52.381 0.00 0.00 0.00 3.71
2032 4027 1.423921 TGCTCCATCATGCATCATCCT 59.576 47.619 0.00 0.00 33.94 3.24
2034 4029 1.200252 GCTGCTCCATCATGCATCATC 59.800 52.381 0.00 0.00 38.59 2.92
2060 4066 6.121590 TGATAACTCCATCATTGCTTGCTTA 58.878 36.000 0.00 0.00 29.93 3.09
2140 4146 7.398834 ACGCGTGTACACCTTATTATTTATC 57.601 36.000 20.11 0.00 0.00 1.75
2144 4150 5.229887 CGTAACGCGTGTACACCTTATTATT 59.770 40.000 20.11 7.73 35.54 1.40
2145 4151 4.734854 CGTAACGCGTGTACACCTTATTAT 59.265 41.667 20.11 0.00 35.54 1.28
2146 4152 4.094911 CGTAACGCGTGTACACCTTATTA 58.905 43.478 20.11 10.65 35.54 0.98
2207 4214 5.418676 GCCTGTTGCAATAAACCATGTAAT 58.581 37.500 0.59 0.00 40.77 1.89
2222 4229 2.094675 ACCAGTCATTATGCCTGTTGC 58.905 47.619 2.56 0.00 41.77 4.17
2223 4230 3.313526 GCTACCAGTCATTATGCCTGTTG 59.686 47.826 2.56 0.00 0.00 3.33
2224 4231 3.054434 TGCTACCAGTCATTATGCCTGTT 60.054 43.478 2.56 0.00 0.00 3.16
2225 4232 2.505407 TGCTACCAGTCATTATGCCTGT 59.495 45.455 2.56 0.00 0.00 4.00
2226 4233 3.198409 TGCTACCAGTCATTATGCCTG 57.802 47.619 0.00 0.00 0.00 4.85
2227 4234 3.545703 GTTGCTACCAGTCATTATGCCT 58.454 45.455 0.00 0.00 0.00 4.75
2228 4235 2.287915 CGTTGCTACCAGTCATTATGCC 59.712 50.000 0.00 0.00 0.00 4.40
2229 4236 2.287915 CCGTTGCTACCAGTCATTATGC 59.712 50.000 0.00 0.00 0.00 3.14
2230 4237 3.531538 ACCGTTGCTACCAGTCATTATG 58.468 45.455 0.00 0.00 0.00 1.90
2231 4238 3.451178 AGACCGTTGCTACCAGTCATTAT 59.549 43.478 15.14 0.00 30.30 1.28
2232 4239 2.829720 AGACCGTTGCTACCAGTCATTA 59.170 45.455 15.14 0.00 30.30 1.90
2233 4240 1.623811 AGACCGTTGCTACCAGTCATT 59.376 47.619 15.14 0.00 30.30 2.57
2234 4241 1.267121 AGACCGTTGCTACCAGTCAT 58.733 50.000 15.14 2.43 30.30 3.06
2235 4242 1.816835 CTAGACCGTTGCTACCAGTCA 59.183 52.381 15.14 4.54 30.30 3.41
2236 4243 1.469423 GCTAGACCGTTGCTACCAGTC 60.469 57.143 0.00 7.69 0.00 3.51
2237 4244 0.531200 GCTAGACCGTTGCTACCAGT 59.469 55.000 0.00 0.00 0.00 4.00
2238 4245 0.530744 TGCTAGACCGTTGCTACCAG 59.469 55.000 0.00 0.00 0.00 4.00
2239 4246 0.245539 GTGCTAGACCGTTGCTACCA 59.754 55.000 0.00 0.00 0.00 3.25
2240 4247 0.531200 AGTGCTAGACCGTTGCTACC 59.469 55.000 0.00 0.00 0.00 3.18
2241 4248 2.365408 AAGTGCTAGACCGTTGCTAC 57.635 50.000 0.00 0.00 0.00 3.58
2242 4249 2.561419 AGAAAGTGCTAGACCGTTGCTA 59.439 45.455 0.00 0.00 0.00 3.49
2243 4250 1.344763 AGAAAGTGCTAGACCGTTGCT 59.655 47.619 0.00 0.00 0.00 3.91
2244 4251 1.797025 AGAAAGTGCTAGACCGTTGC 58.203 50.000 0.00 0.00 0.00 4.17
2245 4252 4.143389 CGTAAAGAAAGTGCTAGACCGTTG 60.143 45.833 0.00 0.00 0.00 4.10
2246 4253 3.985925 CGTAAAGAAAGTGCTAGACCGTT 59.014 43.478 0.00 0.00 0.00 4.44
2247 4254 3.572584 CGTAAAGAAAGTGCTAGACCGT 58.427 45.455 0.00 0.00 0.00 4.83
2248 4255 2.921754 CCGTAAAGAAAGTGCTAGACCG 59.078 50.000 0.00 0.00 0.00 4.79
2249 4256 2.671888 GCCGTAAAGAAAGTGCTAGACC 59.328 50.000 0.00 0.00 0.00 3.85
2250 4257 2.671888 GGCCGTAAAGAAAGTGCTAGAC 59.328 50.000 0.00 0.00 0.00 2.59
2251 4258 2.354403 GGGCCGTAAAGAAAGTGCTAGA 60.354 50.000 0.00 0.00 0.00 2.43
2252 4259 2.007608 GGGCCGTAAAGAAAGTGCTAG 58.992 52.381 0.00 0.00 0.00 3.42
2253 4260 1.626825 AGGGCCGTAAAGAAAGTGCTA 59.373 47.619 0.00 0.00 0.00 3.49
2254 4261 0.400594 AGGGCCGTAAAGAAAGTGCT 59.599 50.000 0.00 0.00 0.00 4.40
2255 4262 0.521735 CAGGGCCGTAAAGAAAGTGC 59.478 55.000 0.00 0.00 0.00 4.40
2256 4263 1.892209 ACAGGGCCGTAAAGAAAGTG 58.108 50.000 0.00 0.00 0.00 3.16
2257 4264 2.227194 CAACAGGGCCGTAAAGAAAGT 58.773 47.619 0.00 0.00 0.00 2.66
2258 4265 1.068541 GCAACAGGGCCGTAAAGAAAG 60.069 52.381 0.00 0.00 0.00 2.62
2259 4266 0.955905 GCAACAGGGCCGTAAAGAAA 59.044 50.000 0.00 0.00 0.00 2.52
2260 4267 0.179015 TGCAACAGGGCCGTAAAGAA 60.179 50.000 0.00 0.00 0.00 2.52
2261 4268 0.887387 GTGCAACAGGGCCGTAAAGA 60.887 55.000 0.00 0.00 36.32 2.52
2262 4269 1.579429 GTGCAACAGGGCCGTAAAG 59.421 57.895 0.00 0.00 36.32 1.85
2263 4270 1.899534 GGTGCAACAGGGCCGTAAA 60.900 57.895 0.00 0.00 39.98 2.01
2264 4271 2.281900 GGTGCAACAGGGCCGTAA 60.282 61.111 0.00 0.00 39.98 3.18
2265 4272 4.690719 CGGTGCAACAGGGCCGTA 62.691 66.667 0.98 0.00 39.98 4.02
2272 4279 1.890041 TCGAAACCCGGTGCAACAG 60.890 57.895 0.98 0.00 39.98 3.16
2273 4280 2.181521 GTCGAAACCCGGTGCAACA 61.182 57.895 0.98 0.00 39.98 3.33
2274 4281 1.890510 AGTCGAAACCCGGTGCAAC 60.891 57.895 0.00 0.00 39.14 4.17
2275 4282 1.890041 CAGTCGAAACCCGGTGCAA 60.890 57.895 0.00 0.00 39.14 4.08
2276 4283 2.280524 CAGTCGAAACCCGGTGCA 60.281 61.111 0.00 0.00 39.14 4.57
2277 4284 1.441732 AAACAGTCGAAACCCGGTGC 61.442 55.000 0.00 0.00 39.14 5.01
2278 4285 1.003223 GAAAACAGTCGAAACCCGGTG 60.003 52.381 0.00 0.00 39.14 4.94
2279 4286 1.302366 GAAAACAGTCGAAACCCGGT 58.698 50.000 0.00 0.00 39.14 5.28
2280 4287 0.589708 GGAAAACAGTCGAAACCCGG 59.410 55.000 0.00 0.00 39.14 5.73
2281 4288 1.589803 AGGAAAACAGTCGAAACCCG 58.410 50.000 0.00 0.00 40.25 5.28
2282 4289 3.003378 CAGAAGGAAAACAGTCGAAACCC 59.997 47.826 0.00 0.00 0.00 4.11
2283 4290 3.626217 ACAGAAGGAAAACAGTCGAAACC 59.374 43.478 0.00 0.00 0.00 3.27
2284 4291 4.877323 ACAGAAGGAAAACAGTCGAAAC 57.123 40.909 0.00 0.00 0.00 2.78
2285 4292 5.007332 GCTAACAGAAGGAAAACAGTCGAAA 59.993 40.000 0.00 0.00 0.00 3.46
2286 4293 4.510340 GCTAACAGAAGGAAAACAGTCGAA 59.490 41.667 0.00 0.00 0.00 3.71
2287 4294 4.056050 GCTAACAGAAGGAAAACAGTCGA 58.944 43.478 0.00 0.00 0.00 4.20
2288 4295 3.807622 TGCTAACAGAAGGAAAACAGTCG 59.192 43.478 0.00 0.00 0.00 4.18
2302 4309 1.450312 CGGGCCCTTCTGCTAACAG 60.450 63.158 22.43 0.00 45.95 3.16
2303 4310 2.221299 ACGGGCCCTTCTGCTAACA 61.221 57.895 22.43 0.00 0.00 2.41
2304 4311 1.745489 CACGGGCCCTTCTGCTAAC 60.745 63.158 22.43 0.00 0.00 2.34
2305 4312 2.668632 CACGGGCCCTTCTGCTAA 59.331 61.111 22.43 0.00 0.00 3.09
2306 4313 4.096003 GCACGGGCCCTTCTGCTA 62.096 66.667 22.43 0.00 0.00 3.49
2310 4317 4.265056 AAACGCACGGGCCCTTCT 62.265 61.111 22.43 0.00 36.38 2.85
2311 4318 4.038080 CAAACGCACGGGCCCTTC 62.038 66.667 22.43 7.50 36.38 3.46
2317 4324 4.368808 CTGTCGCAAACGCACGGG 62.369 66.667 0.00 0.00 39.84 5.28
2318 4325 4.368808 CCTGTCGCAAACGCACGG 62.369 66.667 0.00 0.00 39.84 4.94
2319 4326 3.281751 CTCCTGTCGCAAACGCACG 62.282 63.158 0.00 0.00 39.84 5.34
2320 4327 1.495584 TTCTCCTGTCGCAAACGCAC 61.496 55.000 0.00 0.00 39.84 5.34
2321 4328 0.812014 TTTCTCCTGTCGCAAACGCA 60.812 50.000 0.00 0.00 39.84 5.24
2322 4329 0.306533 TTTTCTCCTGTCGCAAACGC 59.693 50.000 0.00 0.00 39.84 4.84
2323 4330 2.748461 TTTTTCTCCTGTCGCAAACG 57.252 45.000 0.00 0.00 42.01 3.60
2324 4331 7.693952 TGATATATTTTTCTCCTGTCGCAAAC 58.306 34.615 0.00 0.00 0.00 2.93
2325 4332 7.857734 TGATATATTTTTCTCCTGTCGCAAA 57.142 32.000 0.00 0.00 0.00 3.68
2326 4333 9.554395 TTATGATATATTTTTCTCCTGTCGCAA 57.446 29.630 0.00 0.00 0.00 4.85
2327 4334 9.725019 ATTATGATATATTTTTCTCCTGTCGCA 57.275 29.630 0.00 0.00 0.00 5.10
2341 4348 9.605275 CATGGACGTTGGAGATTATGATATATT 57.395 33.333 0.00 0.00 0.00 1.28
2342 4349 8.981659 TCATGGACGTTGGAGATTATGATATAT 58.018 33.333 0.00 0.00 0.00 0.86
2343 4350 8.251026 GTCATGGACGTTGGAGATTATGATATA 58.749 37.037 0.00 0.00 0.00 0.86
2344 4351 7.099764 GTCATGGACGTTGGAGATTATGATAT 58.900 38.462 0.00 0.00 0.00 1.63
2345 4352 6.455647 GTCATGGACGTTGGAGATTATGATA 58.544 40.000 0.00 0.00 0.00 2.15
2346 4353 5.300752 GTCATGGACGTTGGAGATTATGAT 58.699 41.667 0.00 0.00 0.00 2.45
2347 4354 4.442893 GGTCATGGACGTTGGAGATTATGA 60.443 45.833 0.00 0.00 32.65 2.15
2348 4355 3.809832 GGTCATGGACGTTGGAGATTATG 59.190 47.826 0.00 0.00 32.65 1.90
2349 4356 3.181454 GGGTCATGGACGTTGGAGATTAT 60.181 47.826 0.00 0.00 32.65 1.28
2350 4357 2.169769 GGGTCATGGACGTTGGAGATTA 59.830 50.000 0.00 0.00 32.65 1.75
2351 4358 1.065418 GGGTCATGGACGTTGGAGATT 60.065 52.381 0.00 0.00 32.65 2.40
2352 4359 0.541863 GGGTCATGGACGTTGGAGAT 59.458 55.000 0.00 0.00 32.65 2.75
2353 4360 1.550130 GGGGTCATGGACGTTGGAGA 61.550 60.000 0.00 0.00 32.65 3.71
2354 4361 1.078426 GGGGTCATGGACGTTGGAG 60.078 63.158 0.00 0.00 32.65 3.86
2355 4362 2.949909 CGGGGTCATGGACGTTGGA 61.950 63.158 0.00 0.00 32.65 3.53
2356 4363 2.435938 CGGGGTCATGGACGTTGG 60.436 66.667 0.00 0.00 32.65 3.77
2357 4364 1.302192 AACGGGGTCATGGACGTTG 60.302 57.895 13.73 0.00 46.31 4.10
2358 4365 3.153825 AACGGGGTCATGGACGTT 58.846 55.556 10.31 10.31 43.74 3.99
2359 4366 0.887387 CAAAACGGGGTCATGGACGT 60.887 55.000 0.00 0.00 41.88 4.34
2360 4367 1.873165 CAAAACGGGGTCATGGACG 59.127 57.895 0.00 0.00 32.65 4.79
2361 4368 0.893727 AGCAAAACGGGGTCATGGAC 60.894 55.000 0.00 0.00 0.00 4.02
2362 4369 0.893270 CAGCAAAACGGGGTCATGGA 60.893 55.000 0.00 0.00 0.00 3.41
2363 4370 1.586028 CAGCAAAACGGGGTCATGG 59.414 57.895 0.00 0.00 0.00 3.66
2364 4371 1.080569 GCAGCAAAACGGGGTCATG 60.081 57.895 0.00 0.00 0.00 3.07
2365 4372 0.827507 AAGCAGCAAAACGGGGTCAT 60.828 50.000 0.00 0.00 0.00 3.06
2366 4373 1.452145 GAAGCAGCAAAACGGGGTCA 61.452 55.000 0.00 0.00 0.00 4.02
2367 4374 1.285950 GAAGCAGCAAAACGGGGTC 59.714 57.895 0.00 0.00 0.00 4.46
2368 4375 1.454847 TGAAGCAGCAAAACGGGGT 60.455 52.632 0.00 0.00 0.00 4.95
2369 4376 1.007387 GTGAAGCAGCAAAACGGGG 60.007 57.895 0.00 0.00 0.00 5.73
2370 4377 1.007387 GGTGAAGCAGCAAAACGGG 60.007 57.895 0.00 0.00 0.00 5.28
2371 4378 1.370414 CGGTGAAGCAGCAAAACGG 60.370 57.895 0.00 0.00 0.00 4.44
2372 4379 0.384725 CTCGGTGAAGCAGCAAAACG 60.385 55.000 0.00 0.00 0.00 3.60
2373 4380 0.944386 TCTCGGTGAAGCAGCAAAAC 59.056 50.000 0.00 0.00 0.00 2.43
2374 4381 1.896220 ATCTCGGTGAAGCAGCAAAA 58.104 45.000 0.00 0.00 0.00 2.44
2375 4382 2.760634 TATCTCGGTGAAGCAGCAAA 57.239 45.000 0.00 0.00 0.00 3.68
2376 4383 2.988010 ATATCTCGGTGAAGCAGCAA 57.012 45.000 0.00 0.00 0.00 3.91
2377 4384 4.607293 AATATATCTCGGTGAAGCAGCA 57.393 40.909 0.00 0.00 0.00 4.41
2378 4385 6.333416 TGATAATATATCTCGGTGAAGCAGC 58.667 40.000 0.00 0.00 0.00 5.25
2379 4386 8.763049 TTTGATAATATATCTCGGTGAAGCAG 57.237 34.615 0.00 0.00 0.00 4.24
2380 4387 9.725019 ATTTTGATAATATATCTCGGTGAAGCA 57.275 29.630 0.00 0.00 0.00 3.91
2406 4413 9.689976 ACATTGTTCATGATTTCACGAAATTTA 57.310 25.926 6.47 0.78 40.77 1.40
2407 4414 8.592105 ACATTGTTCATGATTTCACGAAATTT 57.408 26.923 6.47 0.00 40.77 1.82
2408 4415 8.592105 AACATTGTTCATGATTTCACGAAATT 57.408 26.923 6.47 0.00 40.77 1.82
2409 4416 8.592105 AAACATTGTTCATGATTTCACGAAAT 57.408 26.923 1.83 4.71 43.14 2.17
2410 4417 8.417780 AAAACATTGTTCATGATTTCACGAAA 57.582 26.923 1.83 0.00 33.70 3.46
2411 4418 9.521503 TTAAAACATTGTTCATGATTTCACGAA 57.478 25.926 1.83 0.00 38.47 3.85
2412 4419 9.521503 TTTAAAACATTGTTCATGATTTCACGA 57.478 25.926 1.83 0.00 38.47 4.35
2413 4420 9.566624 GTTTAAAACATTGTTCATGATTTCACG 57.433 29.630 1.83 0.00 38.47 4.35
2419 4426 8.550376 GCACAAGTTTAAAACATTGTTCATGAT 58.450 29.630 1.83 0.00 36.24 2.45
2420 4427 7.547019 TGCACAAGTTTAAAACATTGTTCATGA 59.453 29.630 1.83 0.00 36.24 3.07
2421 4428 7.635587 GTGCACAAGTTTAAAACATTGTTCATG 59.364 33.333 13.17 0.00 39.07 3.07
2422 4429 7.332926 TGTGCACAAGTTTAAAACATTGTTCAT 59.667 29.630 19.28 0.00 32.99 2.57
2423 4430 6.646653 TGTGCACAAGTTTAAAACATTGTTCA 59.353 30.769 19.28 9.72 33.54 3.18
2424 4431 7.054855 TGTGCACAAGTTTAAAACATTGTTC 57.945 32.000 19.28 7.85 33.54 3.18
2425 4432 7.608308 ATGTGCACAAGTTTAAAACATTGTT 57.392 28.000 25.72 0.00 33.54 2.83
2426 4433 8.885494 ATATGTGCACAAGTTTAAAACATTGT 57.115 26.923 25.72 3.49 35.00 2.71
2429 4436 9.539825 TCAAATATGTGCACAAGTTTAAAACAT 57.460 25.926 25.72 4.92 0.00 2.71
2430 4437 8.932945 TCAAATATGTGCACAAGTTTAAAACA 57.067 26.923 25.72 7.15 0.00 2.83
2435 4442 9.539825 ACAATTTCAAATATGTGCACAAGTTTA 57.460 25.926 25.72 12.17 0.00 2.01
2436 4443 8.336806 CACAATTTCAAATATGTGCACAAGTTT 58.663 29.630 25.72 22.56 37.03 2.66
2437 4444 7.710044 TCACAATTTCAAATATGTGCACAAGTT 59.290 29.630 25.72 18.08 42.16 2.66
2438 4445 7.208777 TCACAATTTCAAATATGTGCACAAGT 58.791 30.769 25.72 11.27 42.16 3.16
2439 4446 7.620600 GCTCACAATTTCAAATATGTGCACAAG 60.621 37.037 25.72 11.44 42.16 3.16
2440 4447 6.145858 GCTCACAATTTCAAATATGTGCACAA 59.854 34.615 25.72 13.64 42.16 3.33
2441 4448 5.634439 GCTCACAATTTCAAATATGTGCACA 59.366 36.000 24.08 24.08 42.16 4.57
2442 4449 5.634439 TGCTCACAATTTCAAATATGTGCAC 59.366 36.000 10.75 10.75 42.16 4.57
2443 4450 5.780984 TGCTCACAATTTCAAATATGTGCA 58.219 33.333 15.19 15.19 42.16 4.57
2444 4451 6.709145 TTGCTCACAATTTCAAATATGTGC 57.291 33.333 15.24 13.51 42.16 4.57
2458 4465 9.814899 TTCTTGATTTTAGAAAATTGCTCACAA 57.185 25.926 1.93 0.99 38.64 3.33
2459 4466 9.248291 GTTCTTGATTTTAGAAAATTGCTCACA 57.752 29.630 1.93 0.00 38.64 3.58
2460 4467 9.248291 TGTTCTTGATTTTAGAAAATTGCTCAC 57.752 29.630 1.93 0.00 38.64 3.51
2461 4468 9.985730 ATGTTCTTGATTTTAGAAAATTGCTCA 57.014 25.926 1.93 0.00 38.64 4.26
2720 4727 4.589675 TCCGGGCGGCCTGTTTTT 62.590 61.111 27.04 0.00 34.68 1.94
2749 4756 4.326766 CGCAGCACACCCGTTTGG 62.327 66.667 0.00 0.00 41.37 3.28
2750 4757 3.521308 GACGCAGCACACCCGTTTG 62.521 63.158 0.00 0.00 35.06 2.93
2751 4758 3.276846 GACGCAGCACACCCGTTT 61.277 61.111 0.00 0.00 35.06 3.60
2752 4759 3.750373 AAGACGCAGCACACCCGTT 62.750 57.895 0.00 0.00 35.06 4.44
2753 4760 3.750373 AAAGACGCAGCACACCCGT 62.750 57.895 0.00 0.00 37.99 5.28
2754 4761 2.058829 AAAAAGACGCAGCACACCCG 62.059 55.000 0.00 0.00 0.00 5.28
2755 4762 0.317854 GAAAAAGACGCAGCACACCC 60.318 55.000 0.00 0.00 0.00 4.61
2756 4763 0.317854 GGAAAAAGACGCAGCACACC 60.318 55.000 0.00 0.00 0.00 4.16
2757 4764 0.380378 TGGAAAAAGACGCAGCACAC 59.620 50.000 0.00 0.00 0.00 3.82
2758 4765 0.662619 CTGGAAAAAGACGCAGCACA 59.337 50.000 0.00 0.00 0.00 4.57
2759 4766 0.661483 GCTGGAAAAAGACGCAGCAC 60.661 55.000 0.00 0.00 34.36 4.40
2760 4767 1.100463 TGCTGGAAAAAGACGCAGCA 61.100 50.000 0.00 0.00 38.32 4.41
2761 4768 0.661483 GTGCTGGAAAAAGACGCAGC 60.661 55.000 0.00 0.00 34.59 5.25
2762 4769 0.384725 CGTGCTGGAAAAAGACGCAG 60.385 55.000 0.00 0.00 0.00 5.18
2763 4770 1.646540 CGTGCTGGAAAAAGACGCA 59.353 52.632 0.00 0.00 0.00 5.24
2764 4771 4.515107 CGTGCTGGAAAAAGACGC 57.485 55.556 0.00 0.00 0.00 5.19
2765 4772 0.384725 CTGCGTGCTGGAAAAAGACG 60.385 55.000 0.00 0.00 0.00 4.18
2766 4773 0.944386 TCTGCGTGCTGGAAAAAGAC 59.056 50.000 0.00 0.00 0.00 3.01
2767 4774 1.229428 CTCTGCGTGCTGGAAAAAGA 58.771 50.000 0.00 0.00 0.00 2.52
2768 4775 0.386478 GCTCTGCGTGCTGGAAAAAG 60.386 55.000 0.00 0.00 0.00 2.27
2769 4776 1.654220 GCTCTGCGTGCTGGAAAAA 59.346 52.632 0.00 0.00 0.00 1.94
2770 4777 3.343972 GCTCTGCGTGCTGGAAAA 58.656 55.556 0.00 0.00 0.00 2.29
2781 4788 2.485038 GACCTCCTATACTACGCTCTGC 59.515 54.545 0.00 0.00 0.00 4.26
2782 4789 3.075884 GGACCTCCTATACTACGCTCTG 58.924 54.545 0.00 0.00 0.00 3.35
2783 4790 2.040145 GGGACCTCCTATACTACGCTCT 59.960 54.545 0.00 0.00 35.95 4.09
2784 4791 2.040145 AGGGACCTCCTATACTACGCTC 59.960 54.545 0.00 0.00 45.98 5.03
2785 4792 2.064215 AGGGACCTCCTATACTACGCT 58.936 52.381 0.00 0.00 45.98 5.07
2786 4793 2.583024 AGGGACCTCCTATACTACGC 57.417 55.000 0.00 0.00 45.98 4.42
2794 4801 1.413082 CCATGCAGTAGGGACCTCCTA 60.413 57.143 0.00 0.00 45.98 2.94
2796 4803 1.832912 CCATGCAGTAGGGACCTCC 59.167 63.158 0.00 0.00 29.57 4.30
2803 4810 2.517875 GCCAGCCCATGCAGTAGG 60.518 66.667 0.00 0.00 41.13 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.