Multiple sequence alignment - TraesCS7A01G000500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G000500 chr7A 100.000 2487 0 0 1 2487 294440 291954 0.000000e+00 4593
1 TraesCS7A01G000500 chr7A 94.358 1223 66 3 31 1250 347150594 347149372 0.000000e+00 1873
2 TraesCS7A01G000500 chr7A 94.068 118 7 0 2000 2117 299763 299646 1.970000e-41 180
3 TraesCS7A01G000500 chr3D 94.857 1536 69 8 1 1530 597169706 597168175 0.000000e+00 2390
4 TraesCS7A01G000500 chr3D 89.913 803 75 5 1 802 376259053 376259850 0.000000e+00 1029
5 TraesCS7A01G000500 chr3B 94.191 1532 82 7 1 1529 506981531 506980004 0.000000e+00 2329
6 TraesCS7A01G000500 chr3B 86.370 1504 188 11 27 1528 490788093 490789581 0.000000e+00 1626
7 TraesCS7A01G000500 chr3B 94.209 898 48 4 634 1529 187877148 187878043 0.000000e+00 1367
8 TraesCS7A01G000500 chr4A 94.125 1532 83 7 1 1530 16043590 16042064 0.000000e+00 2324
9 TraesCS7A01G000500 chr4A 93.182 484 24 6 2008 2487 744422030 744422508 0.000000e+00 702
10 TraesCS7A01G000500 chr5B 88.020 1394 151 11 138 1529 683399176 683397797 0.000000e+00 1635
11 TraesCS7A01G000500 chr5D 94.418 842 44 3 690 1530 495786299 495785460 0.000000e+00 1291
12 TraesCS7A01G000500 chr4D 94.792 768 32 7 766 1530 218122568 218121806 0.000000e+00 1190
13 TraesCS7A01G000500 chr4D 94.844 737 30 7 766 1498 218258173 218258905 0.000000e+00 1144
14 TraesCS7A01G000500 chr1D 93.625 502 30 2 154 653 206822399 206821898 0.000000e+00 749
15 TraesCS7A01G000500 chr7D 92.830 265 13 5 2000 2261 351714 351453 1.810000e-101 379
16 TraesCS7A01G000500 chr7D 94.068 236 12 2 2252 2487 351400 351167 8.460000e-95 357
17 TraesCS7A01G000500 chr1A 75.660 341 69 11 34 367 584750748 584750415 9.210000e-35 158
18 TraesCS7A01G000500 chr2B 94.898 98 1 3 2022 2119 639214367 639214460 1.540000e-32 150
19 TraesCS7A01G000500 chr2B 94.845 97 2 2 2031 2127 767472317 767472410 5.540000e-32 148
20 TraesCS7A01G000500 chr2A 94.118 102 1 5 2024 2125 679881330 679881426 1.540000e-32 150
21 TraesCS7A01G000500 chr6B 93.939 99 5 1 2031 2128 41848310 41848408 5.540000e-32 148
22 TraesCS7A01G000500 chr5A 90.741 108 5 5 2026 2128 90607116 90607223 3.340000e-29 139
23 TraesCS7A01G000500 chr6D 88.889 117 5 6 2032 2146 4356502 4356392 1.200000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G000500 chr7A 291954 294440 2486 True 4593 4593 100.000 1 2487 1 chr7A.!!$R1 2486
1 TraesCS7A01G000500 chr7A 347149372 347150594 1222 True 1873 1873 94.358 31 1250 1 chr7A.!!$R3 1219
2 TraesCS7A01G000500 chr3D 597168175 597169706 1531 True 2390 2390 94.857 1 1530 1 chr3D.!!$R1 1529
3 TraesCS7A01G000500 chr3D 376259053 376259850 797 False 1029 1029 89.913 1 802 1 chr3D.!!$F1 801
4 TraesCS7A01G000500 chr3B 506980004 506981531 1527 True 2329 2329 94.191 1 1529 1 chr3B.!!$R1 1528
5 TraesCS7A01G000500 chr3B 490788093 490789581 1488 False 1626 1626 86.370 27 1528 1 chr3B.!!$F2 1501
6 TraesCS7A01G000500 chr3B 187877148 187878043 895 False 1367 1367 94.209 634 1529 1 chr3B.!!$F1 895
7 TraesCS7A01G000500 chr4A 16042064 16043590 1526 True 2324 2324 94.125 1 1530 1 chr4A.!!$R1 1529
8 TraesCS7A01G000500 chr5B 683397797 683399176 1379 True 1635 1635 88.020 138 1529 1 chr5B.!!$R1 1391
9 TraesCS7A01G000500 chr5D 495785460 495786299 839 True 1291 1291 94.418 690 1530 1 chr5D.!!$R1 840
10 TraesCS7A01G000500 chr4D 218121806 218122568 762 True 1190 1190 94.792 766 1530 1 chr4D.!!$R1 764
11 TraesCS7A01G000500 chr4D 218258173 218258905 732 False 1144 1144 94.844 766 1498 1 chr4D.!!$F1 732
12 TraesCS7A01G000500 chr1D 206821898 206822399 501 True 749 749 93.625 154 653 1 chr1D.!!$R1 499
13 TraesCS7A01G000500 chr7D 351167 351714 547 True 368 379 93.449 2000 2487 2 chr7D.!!$R1 487

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
807 815 0.978907 TGTGATCAAGCCTCTCAGCA 59.021 50.0 0.0 0.0 34.23 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1766 1775 0.249031 TACACTCTGGCGATGATGCG 60.249 55.0 0.0 0.0 35.06 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 120 4.967084 TCGTATGGCAAAGTATATGGGT 57.033 40.909 0.00 0.00 0.00 4.51
461 467 1.346395 AGTGGGAAGTGTGTTATGCGA 59.654 47.619 0.00 0.00 0.00 5.10
507 514 1.417517 TGGATCTTCATCACATCCGGG 59.582 52.381 0.00 0.00 39.29 5.73
632 639 3.812053 CCATATTGGCAGTAACTCTCAGC 59.188 47.826 0.00 0.00 0.00 4.26
712 719 4.183865 GAGTAATGCAAATTTGGGAAGCC 58.816 43.478 19.47 2.57 0.00 4.35
807 815 0.978907 TGTGATCAAGCCTCTCAGCA 59.021 50.000 0.00 0.00 34.23 4.41
827 835 4.658435 AGCACATGTATATGGACCCAGTTA 59.342 41.667 0.00 0.00 38.66 2.24
970 978 6.207417 CCTTGAATTTTGTTAGAGCAAGAGGA 59.793 38.462 0.00 0.00 34.71 3.71
992 1000 4.605640 ATTTTGACCCAAGTTCCACATG 57.394 40.909 0.00 0.00 0.00 3.21
1128 1137 1.222661 CATCAGGGCAGCTACAGCA 59.777 57.895 3.70 0.00 45.16 4.41
1281 1290 7.148641 CGCTACATAATAATGAAGGACACTCT 58.851 38.462 0.00 0.00 36.54 3.24
1331 1340 3.902150 TGTCGAGTGATGTTGAGAGAAC 58.098 45.455 0.00 0.00 0.00 3.01
1551 1560 9.928236 AAAAATCGTTCCACATTTATGTTTTTG 57.072 25.926 0.00 0.00 39.39 2.44
1552 1561 8.655651 AAATCGTTCCACATTTATGTTTTTGT 57.344 26.923 0.00 0.00 39.39 2.83
1553 1562 7.636259 ATCGTTCCACATTTATGTTTTTGTG 57.364 32.000 0.00 0.00 39.39 3.33
1554 1563 5.460419 TCGTTCCACATTTATGTTTTTGTGC 59.540 36.000 0.00 0.00 39.39 4.57
1555 1564 5.609269 CGTTCCACATTTATGTTTTTGTGCG 60.609 40.000 0.00 0.00 39.39 5.34
1556 1565 5.188327 TCCACATTTATGTTTTTGTGCGA 57.812 34.783 0.00 0.00 39.39 5.10
1557 1566 4.979197 TCCACATTTATGTTTTTGTGCGAC 59.021 37.500 0.00 0.00 39.39 5.19
1558 1567 4.742167 CCACATTTATGTTTTTGTGCGACA 59.258 37.500 0.00 0.00 39.39 4.35
1559 1568 5.332205 CCACATTTATGTTTTTGTGCGACAC 60.332 40.000 3.44 3.44 39.39 3.67
1560 1569 4.742659 ACATTTATGTTTTTGTGCGACACC 59.257 37.500 7.38 0.00 37.90 4.16
1561 1570 4.371855 TTTATGTTTTTGTGCGACACCA 57.628 36.364 7.38 0.00 32.73 4.17
1562 1571 2.202295 ATGTTTTTGTGCGACACCAC 57.798 45.000 7.38 0.00 32.73 4.16
1563 1572 1.169577 TGTTTTTGTGCGACACCACT 58.830 45.000 7.38 0.00 36.68 4.00
1564 1573 1.542030 TGTTTTTGTGCGACACCACTT 59.458 42.857 7.38 0.00 36.68 3.16
1565 1574 2.747989 TGTTTTTGTGCGACACCACTTA 59.252 40.909 7.38 0.00 36.68 2.24
1566 1575 3.103007 GTTTTTGTGCGACACCACTTAC 58.897 45.455 7.38 0.00 36.68 2.34
1567 1576 1.301423 TTTGTGCGACACCACTTACC 58.699 50.000 7.38 0.00 36.68 2.85
1568 1577 0.178301 TTGTGCGACACCACTTACCA 59.822 50.000 7.38 0.00 36.68 3.25
1569 1578 0.394938 TGTGCGACACCACTTACCAT 59.605 50.000 7.38 0.00 36.68 3.55
1570 1579 1.076332 GTGCGACACCACTTACCATC 58.924 55.000 0.00 0.00 33.02 3.51
1571 1580 0.973632 TGCGACACCACTTACCATCT 59.026 50.000 0.00 0.00 0.00 2.90
1572 1581 1.346395 TGCGACACCACTTACCATCTT 59.654 47.619 0.00 0.00 0.00 2.40
1573 1582 1.732259 GCGACACCACTTACCATCTTG 59.268 52.381 0.00 0.00 0.00 3.02
1574 1583 2.870435 GCGACACCACTTACCATCTTGT 60.870 50.000 0.00 0.00 0.00 3.16
1575 1584 3.399330 CGACACCACTTACCATCTTGTT 58.601 45.455 0.00 0.00 0.00 2.83
1576 1585 3.813166 CGACACCACTTACCATCTTGTTT 59.187 43.478 0.00 0.00 0.00 2.83
1577 1586 4.274950 CGACACCACTTACCATCTTGTTTT 59.725 41.667 0.00 0.00 0.00 2.43
1578 1587 5.220970 CGACACCACTTACCATCTTGTTTTT 60.221 40.000 0.00 0.00 0.00 1.94
1579 1588 6.017770 CGACACCACTTACCATCTTGTTTTTA 60.018 38.462 0.00 0.00 0.00 1.52
1580 1589 7.308348 CGACACCACTTACCATCTTGTTTTTAT 60.308 37.037 0.00 0.00 0.00 1.40
1581 1590 8.245195 ACACCACTTACCATCTTGTTTTTATT 57.755 30.769 0.00 0.00 0.00 1.40
1582 1591 8.141268 ACACCACTTACCATCTTGTTTTTATTG 58.859 33.333 0.00 0.00 0.00 1.90
1583 1592 8.141268 CACCACTTACCATCTTGTTTTTATTGT 58.859 33.333 0.00 0.00 0.00 2.71
1584 1593 9.357161 ACCACTTACCATCTTGTTTTTATTGTA 57.643 29.630 0.00 0.00 0.00 2.41
1585 1594 9.620660 CCACTTACCATCTTGTTTTTATTGTAC 57.379 33.333 0.00 0.00 0.00 2.90
1586 1595 9.325150 CACTTACCATCTTGTTTTTATTGTACG 57.675 33.333 0.00 0.00 0.00 3.67
1587 1596 8.508875 ACTTACCATCTTGTTTTTATTGTACGG 58.491 33.333 0.00 0.00 0.00 4.02
1588 1597 6.262193 ACCATCTTGTTTTTATTGTACGGG 57.738 37.500 0.00 0.00 0.00 5.28
1589 1598 6.005198 ACCATCTTGTTTTTATTGTACGGGA 58.995 36.000 0.00 0.00 0.00 5.14
1590 1599 6.490721 ACCATCTTGTTTTTATTGTACGGGAA 59.509 34.615 0.00 0.00 0.00 3.97
1591 1600 7.177744 ACCATCTTGTTTTTATTGTACGGGAAT 59.822 33.333 0.00 0.00 0.00 3.01
1592 1601 8.679100 CCATCTTGTTTTTATTGTACGGGAATA 58.321 33.333 0.00 0.00 0.00 1.75
1593 1602 9.716507 CATCTTGTTTTTATTGTACGGGAATAG 57.283 33.333 0.00 0.00 0.00 1.73
1594 1603 8.271312 TCTTGTTTTTATTGTACGGGAATAGG 57.729 34.615 0.00 0.00 0.00 2.57
1595 1604 7.884354 TCTTGTTTTTATTGTACGGGAATAGGT 59.116 33.333 0.00 0.00 0.00 3.08
1596 1605 7.380431 TGTTTTTATTGTACGGGAATAGGTG 57.620 36.000 0.00 0.00 0.00 4.00
1597 1606 7.166851 TGTTTTTATTGTACGGGAATAGGTGA 58.833 34.615 0.00 0.00 0.00 4.02
1598 1607 7.334921 TGTTTTTATTGTACGGGAATAGGTGAG 59.665 37.037 0.00 0.00 0.00 3.51
1599 1608 6.549433 TTTATTGTACGGGAATAGGTGAGT 57.451 37.500 0.00 0.00 0.00 3.41
1600 1609 3.880047 TTGTACGGGAATAGGTGAGTG 57.120 47.619 0.00 0.00 0.00 3.51
1601 1610 2.811410 TGTACGGGAATAGGTGAGTGT 58.189 47.619 0.00 0.00 0.00 3.55
1602 1611 2.494471 TGTACGGGAATAGGTGAGTGTG 59.506 50.000 0.00 0.00 0.00 3.82
1603 1612 0.902531 ACGGGAATAGGTGAGTGTGG 59.097 55.000 0.00 0.00 0.00 4.17
1604 1613 0.178068 CGGGAATAGGTGAGTGTGGG 59.822 60.000 0.00 0.00 0.00 4.61
1605 1614 0.546598 GGGAATAGGTGAGTGTGGGG 59.453 60.000 0.00 0.00 0.00 4.96
1606 1615 1.580059 GGAATAGGTGAGTGTGGGGA 58.420 55.000 0.00 0.00 0.00 4.81
1607 1616 1.486726 GGAATAGGTGAGTGTGGGGAG 59.513 57.143 0.00 0.00 0.00 4.30
1608 1617 2.467880 GAATAGGTGAGTGTGGGGAGA 58.532 52.381 0.00 0.00 0.00 3.71
1609 1618 2.166907 ATAGGTGAGTGTGGGGAGAG 57.833 55.000 0.00 0.00 0.00 3.20
1610 1619 0.041238 TAGGTGAGTGTGGGGAGAGG 59.959 60.000 0.00 0.00 0.00 3.69
1611 1620 2.294078 GGTGAGTGTGGGGAGAGGG 61.294 68.421 0.00 0.00 0.00 4.30
1612 1621 1.229209 GTGAGTGTGGGGAGAGGGA 60.229 63.158 0.00 0.00 0.00 4.20
1613 1622 0.836400 GTGAGTGTGGGGAGAGGGAA 60.836 60.000 0.00 0.00 0.00 3.97
1614 1623 0.545309 TGAGTGTGGGGAGAGGGAAG 60.545 60.000 0.00 0.00 0.00 3.46
1615 1624 1.229658 AGTGTGGGGAGAGGGAAGG 60.230 63.158 0.00 0.00 0.00 3.46
1616 1625 2.124996 TGTGGGGAGAGGGAAGGG 59.875 66.667 0.00 0.00 0.00 3.95
1617 1626 2.125225 GTGGGGAGAGGGAAGGGT 59.875 66.667 0.00 0.00 0.00 4.34
1618 1627 1.996187 GTGGGGAGAGGGAAGGGTC 60.996 68.421 0.00 0.00 0.00 4.46
1619 1628 2.184631 TGGGGAGAGGGAAGGGTCT 61.185 63.158 0.00 0.00 0.00 3.85
1620 1629 0.858598 TGGGGAGAGGGAAGGGTCTA 60.859 60.000 0.00 0.00 0.00 2.59
1621 1630 0.105401 GGGGAGAGGGAAGGGTCTAG 60.105 65.000 0.00 0.00 0.00 2.43
1622 1631 0.935194 GGGAGAGGGAAGGGTCTAGA 59.065 60.000 0.00 0.00 0.00 2.43
1623 1632 1.133294 GGGAGAGGGAAGGGTCTAGAG 60.133 61.905 0.00 0.00 0.00 2.43
1624 1633 1.699730 GAGAGGGAAGGGTCTAGAGC 58.300 60.000 13.67 13.67 0.00 4.09
1635 1644 3.658757 GGTCTAGAGCCATTGAGCTAG 57.341 52.381 10.97 0.00 45.15 3.42
1636 1645 2.298729 GGTCTAGAGCCATTGAGCTAGG 59.701 54.545 10.97 0.00 45.15 3.02
1637 1646 2.298729 GTCTAGAGCCATTGAGCTAGGG 59.701 54.545 0.00 0.00 45.15 3.53
1638 1647 2.177888 TCTAGAGCCATTGAGCTAGGGA 59.822 50.000 0.00 0.00 45.15 4.20
1639 1648 1.885049 AGAGCCATTGAGCTAGGGAA 58.115 50.000 0.00 0.00 45.15 3.97
1640 1649 1.767681 AGAGCCATTGAGCTAGGGAAG 59.232 52.381 0.00 0.00 45.15 3.46
1641 1650 1.488393 GAGCCATTGAGCTAGGGAAGT 59.512 52.381 0.00 0.00 45.15 3.01
1642 1651 1.211457 AGCCATTGAGCTAGGGAAGTG 59.789 52.381 0.00 0.00 42.70 3.16
1643 1652 1.065126 GCCATTGAGCTAGGGAAGTGT 60.065 52.381 0.00 0.00 0.00 3.55
1644 1653 2.636830 CCATTGAGCTAGGGAAGTGTG 58.363 52.381 0.00 0.00 0.00 3.82
1645 1654 2.237143 CCATTGAGCTAGGGAAGTGTGA 59.763 50.000 0.00 0.00 0.00 3.58
1646 1655 3.118112 CCATTGAGCTAGGGAAGTGTGAT 60.118 47.826 0.00 0.00 0.00 3.06
1647 1656 4.521146 CATTGAGCTAGGGAAGTGTGATT 58.479 43.478 0.00 0.00 0.00 2.57
1648 1657 4.640771 TTGAGCTAGGGAAGTGTGATTT 57.359 40.909 0.00 0.00 0.00 2.17
1649 1658 4.640771 TGAGCTAGGGAAGTGTGATTTT 57.359 40.909 0.00 0.00 0.00 1.82
1650 1659 4.985538 TGAGCTAGGGAAGTGTGATTTTT 58.014 39.130 0.00 0.00 0.00 1.94
1667 1676 3.082165 TTTTTCTCCCGTTGCGACA 57.918 47.368 4.64 0.00 0.00 4.35
1668 1677 0.658897 TTTTTCTCCCGTTGCGACAC 59.341 50.000 4.64 0.00 0.00 3.67
1669 1678 0.462225 TTTTCTCCCGTTGCGACACA 60.462 50.000 4.64 0.00 0.00 3.72
1670 1679 1.155424 TTTCTCCCGTTGCGACACAC 61.155 55.000 4.64 0.00 0.00 3.82
1671 1680 2.279851 CTCCCGTTGCGACACACA 60.280 61.111 4.64 0.00 0.00 3.72
1672 1681 1.885388 CTCCCGTTGCGACACACAA 60.885 57.895 4.64 0.00 0.00 3.33
1673 1682 1.831389 CTCCCGTTGCGACACACAAG 61.831 60.000 4.64 0.00 0.00 3.16
1674 1683 2.052237 CCGTTGCGACACACAAGC 60.052 61.111 4.64 0.00 0.00 4.01
1675 1684 2.706432 CGTTGCGACACACAAGCA 59.294 55.556 4.64 0.00 39.33 3.91
1676 1685 1.061729 CGTTGCGACACACAAGCAA 59.938 52.632 4.64 0.00 46.91 3.91
1679 1688 2.575694 TTGCGACACACAAGCAAATT 57.424 40.000 0.00 0.00 46.23 1.82
1680 1689 2.575694 TGCGACACACAAGCAAATTT 57.424 40.000 0.00 0.00 38.01 1.82
1681 1690 2.191802 TGCGACACACAAGCAAATTTG 58.808 42.857 14.03 14.03 38.01 2.32
1697 1706 6.867662 CAAATTTGCTACTCCCTTCGATAT 57.132 37.500 5.01 0.00 0.00 1.63
1698 1707 7.962964 CAAATTTGCTACTCCCTTCGATATA 57.037 36.000 5.01 0.00 0.00 0.86
1699 1708 8.378172 CAAATTTGCTACTCCCTTCGATATAA 57.622 34.615 5.01 0.00 0.00 0.98
1700 1709 8.836413 CAAATTTGCTACTCCCTTCGATATAAA 58.164 33.333 5.01 0.00 0.00 1.40
1701 1710 8.974060 AATTTGCTACTCCCTTCGATATAAAA 57.026 30.769 0.00 0.00 0.00 1.52
1702 1711 9.574516 AATTTGCTACTCCCTTCGATATAAAAT 57.425 29.630 0.00 0.00 0.00 1.82
1705 1714 9.706691 TTGCTACTCCCTTCGATATAAAATAAG 57.293 33.333 0.00 0.00 0.00 1.73
1706 1715 8.867097 TGCTACTCCCTTCGATATAAAATAAGT 58.133 33.333 0.00 0.00 0.00 2.24
1707 1716 9.141400 GCTACTCCCTTCGATATAAAATAAGTG 57.859 37.037 0.00 0.00 0.00 3.16
1710 1719 9.712305 ACTCCCTTCGATATAAAATAAGTGATG 57.288 33.333 0.00 0.00 0.00 3.07
1711 1720 9.712305 CTCCCTTCGATATAAAATAAGTGATGT 57.288 33.333 0.00 0.00 0.00 3.06
1712 1721 9.489084 TCCCTTCGATATAAAATAAGTGATGTG 57.511 33.333 0.00 0.00 0.00 3.21
1713 1722 8.721478 CCCTTCGATATAAAATAAGTGATGTGG 58.279 37.037 0.00 0.00 0.00 4.17
1714 1723 9.273016 CCTTCGATATAAAATAAGTGATGTGGT 57.727 33.333 0.00 0.00 0.00 4.16
1724 1733 9.829507 AAAATAAGTGATGTGGTTTCATTTCAA 57.170 25.926 0.00 0.00 0.00 2.69
1725 1734 9.829507 AAATAAGTGATGTGGTTTCATTTCAAA 57.170 25.926 0.00 0.00 0.00 2.69
1728 1737 7.718272 AGTGATGTGGTTTCATTTCAAATTG 57.282 32.000 0.00 0.00 0.00 2.32
1729 1738 7.499292 AGTGATGTGGTTTCATTTCAAATTGA 58.501 30.769 0.00 0.00 0.00 2.57
1730 1739 7.986320 AGTGATGTGGTTTCATTTCAAATTGAA 59.014 29.630 4.03 4.03 34.03 2.69
1731 1740 8.277713 GTGATGTGGTTTCATTTCAAATTGAAG 58.722 33.333 8.51 0.00 37.70 3.02
1732 1741 7.986320 TGATGTGGTTTCATTTCAAATTGAAGT 59.014 29.630 8.51 3.14 37.70 3.01
1733 1742 9.474920 GATGTGGTTTCATTTCAAATTGAAGTA 57.525 29.630 8.51 0.00 37.70 2.24
1734 1743 8.870160 TGTGGTTTCATTTCAAATTGAAGTAG 57.130 30.769 8.51 3.64 37.70 2.57
1735 1744 8.474025 TGTGGTTTCATTTCAAATTGAAGTAGT 58.526 29.630 8.51 0.00 37.70 2.73
1736 1745 9.959749 GTGGTTTCATTTCAAATTGAAGTAGTA 57.040 29.630 8.51 0.00 37.70 1.82
1737 1746 9.959749 TGGTTTCATTTCAAATTGAAGTAGTAC 57.040 29.630 8.51 6.26 37.70 2.73
1738 1747 9.959749 GGTTTCATTTCAAATTGAAGTAGTACA 57.040 29.630 8.51 0.00 37.70 2.90
1759 1768 9.636789 AGTACATACTAACATACATCAGTACCA 57.363 33.333 0.00 0.00 34.13 3.25
1760 1769 9.674824 GTACATACTAACATACATCAGTACCAC 57.325 37.037 0.00 0.00 31.96 4.16
1761 1770 7.423199 ACATACTAACATACATCAGTACCACG 58.577 38.462 0.00 0.00 31.96 4.94
1762 1771 7.283807 ACATACTAACATACATCAGTACCACGA 59.716 37.037 0.00 0.00 31.96 4.35
1763 1772 6.710597 ACTAACATACATCAGTACCACGAT 57.289 37.500 0.00 0.00 31.96 3.73
1764 1773 6.504398 ACTAACATACATCAGTACCACGATG 58.496 40.000 13.30 13.30 43.78 3.84
1765 1774 5.592104 AACATACATCAGTACCACGATGA 57.408 39.130 19.10 4.70 41.28 2.92
1766 1775 4.933330 ACATACATCAGTACCACGATGAC 58.067 43.478 19.10 0.00 41.28 3.06
1767 1776 2.561733 ACATCAGTACCACGATGACG 57.438 50.000 19.10 0.11 41.28 4.35
1768 1777 1.200483 CATCAGTACCACGATGACGC 58.800 55.000 10.54 0.00 41.28 5.19
1769 1778 0.815095 ATCAGTACCACGATGACGCA 59.185 50.000 0.00 0.00 43.96 5.24
1770 1779 0.815095 TCAGTACCACGATGACGCAT 59.185 50.000 0.00 0.00 43.96 4.73
1771 1780 1.200483 CAGTACCACGATGACGCATC 58.800 55.000 9.06 9.06 43.96 3.91
1772 1781 0.815095 AGTACCACGATGACGCATCA 59.185 50.000 16.44 0.00 40.54 3.07
1779 1788 4.038521 ATGACGCATCATCGCCAG 57.961 55.556 0.00 0.00 42.15 4.85
1780 1789 1.442987 ATGACGCATCATCGCCAGA 59.557 52.632 0.00 0.00 42.15 3.86
1781 1790 0.599466 ATGACGCATCATCGCCAGAG 60.599 55.000 0.00 0.00 42.15 3.35
1782 1791 1.227089 GACGCATCATCGCCAGAGT 60.227 57.895 0.00 0.00 0.00 3.24
1783 1792 1.485838 GACGCATCATCGCCAGAGTG 61.486 60.000 0.00 0.00 0.00 3.51
1784 1793 1.520120 CGCATCATCGCCAGAGTGT 60.520 57.895 0.00 0.00 0.00 3.55
1785 1794 0.249031 CGCATCATCGCCAGAGTGTA 60.249 55.000 0.00 0.00 0.00 2.90
1786 1795 1.212616 GCATCATCGCCAGAGTGTAC 58.787 55.000 0.00 0.00 0.00 2.90
1787 1796 1.471501 GCATCATCGCCAGAGTGTACA 60.472 52.381 0.00 0.00 0.00 2.90
1788 1797 2.892374 CATCATCGCCAGAGTGTACAA 58.108 47.619 0.00 0.00 0.00 2.41
1789 1798 2.654749 TCATCGCCAGAGTGTACAAG 57.345 50.000 0.00 0.00 0.00 3.16
1790 1799 1.893137 TCATCGCCAGAGTGTACAAGT 59.107 47.619 0.00 0.00 0.00 3.16
1791 1800 2.094700 TCATCGCCAGAGTGTACAAGTC 60.095 50.000 0.00 0.00 0.00 3.01
1792 1801 1.324383 TCGCCAGAGTGTACAAGTCA 58.676 50.000 0.00 0.00 0.00 3.41
1793 1802 1.269723 TCGCCAGAGTGTACAAGTCAG 59.730 52.381 0.00 0.00 0.00 3.51
1794 1803 1.000163 CGCCAGAGTGTACAAGTCAGT 60.000 52.381 0.00 0.00 0.00 3.41
1795 1804 2.545952 CGCCAGAGTGTACAAGTCAGTT 60.546 50.000 0.00 0.00 0.00 3.16
1796 1805 3.305131 CGCCAGAGTGTACAAGTCAGTTA 60.305 47.826 0.00 0.00 0.00 2.24
1797 1806 4.628074 GCCAGAGTGTACAAGTCAGTTAA 58.372 43.478 0.00 0.00 0.00 2.01
1798 1807 5.238583 GCCAGAGTGTACAAGTCAGTTAAT 58.761 41.667 0.00 0.00 0.00 1.40
1799 1808 5.701290 GCCAGAGTGTACAAGTCAGTTAATT 59.299 40.000 0.00 0.00 0.00 1.40
1800 1809 6.872020 GCCAGAGTGTACAAGTCAGTTAATTA 59.128 38.462 0.00 0.00 0.00 1.40
1801 1810 7.063544 GCCAGAGTGTACAAGTCAGTTAATTAG 59.936 40.741 0.00 0.00 0.00 1.73
1802 1811 8.088981 CCAGAGTGTACAAGTCAGTTAATTAGT 58.911 37.037 0.00 0.00 0.00 2.24
1803 1812 9.130312 CAGAGTGTACAAGTCAGTTAATTAGTC 57.870 37.037 0.00 0.00 0.00 2.59
1804 1813 8.305317 AGAGTGTACAAGTCAGTTAATTAGTCC 58.695 37.037 0.00 0.00 0.00 3.85
1805 1814 8.191534 AGTGTACAAGTCAGTTAATTAGTCCT 57.808 34.615 0.00 0.00 0.00 3.85
1806 1815 8.305317 AGTGTACAAGTCAGTTAATTAGTCCTC 58.695 37.037 0.00 0.00 0.00 3.71
1807 1816 8.305317 GTGTACAAGTCAGTTAATTAGTCCTCT 58.695 37.037 0.00 0.00 0.00 3.69
1808 1817 9.524496 TGTACAAGTCAGTTAATTAGTCCTCTA 57.476 33.333 0.00 0.00 0.00 2.43
1811 1820 9.708092 ACAAGTCAGTTAATTAGTCCTCTAAAC 57.292 33.333 0.00 0.00 39.23 2.01
1812 1821 9.706691 CAAGTCAGTTAATTAGTCCTCTAAACA 57.293 33.333 0.00 0.00 39.23 2.83
1814 1823 9.708092 AGTCAGTTAATTAGTCCTCTAAACAAC 57.292 33.333 0.00 0.00 39.23 3.32
1815 1824 9.485206 GTCAGTTAATTAGTCCTCTAAACAACA 57.515 33.333 12.77 0.00 39.23 3.33
1820 1829 9.667107 TTAATTAGTCCTCTAAACAACATCAGG 57.333 33.333 0.00 0.00 39.23 3.86
1821 1830 4.559862 AGTCCTCTAAACAACATCAGGG 57.440 45.455 0.00 0.00 0.00 4.45
1822 1831 4.168101 AGTCCTCTAAACAACATCAGGGA 58.832 43.478 0.00 0.00 0.00 4.20
1823 1832 4.785376 AGTCCTCTAAACAACATCAGGGAT 59.215 41.667 0.00 0.00 0.00 3.85
1824 1833 5.251700 AGTCCTCTAAACAACATCAGGGATT 59.748 40.000 0.00 0.00 0.00 3.01
1825 1834 5.355350 GTCCTCTAAACAACATCAGGGATTG 59.645 44.000 0.00 0.00 0.00 2.67
1826 1835 5.014123 TCCTCTAAACAACATCAGGGATTGT 59.986 40.000 0.00 0.00 38.18 2.71
1827 1836 6.214615 TCCTCTAAACAACATCAGGGATTGTA 59.785 38.462 0.00 0.00 35.54 2.41
1828 1837 6.316390 CCTCTAAACAACATCAGGGATTGTAC 59.684 42.308 0.00 0.00 35.54 2.90
1829 1838 6.177610 TCTAAACAACATCAGGGATTGTACC 58.822 40.000 0.00 0.00 35.54 3.34
1830 1839 2.985896 ACAACATCAGGGATTGTACCG 58.014 47.619 0.00 0.00 34.84 4.02
1831 1840 2.288666 CAACATCAGGGATTGTACCGG 58.711 52.381 0.00 0.00 0.00 5.28
1832 1841 0.837272 ACATCAGGGATTGTACCGGG 59.163 55.000 6.32 0.00 0.00 5.73
1833 1842 1.128200 CATCAGGGATTGTACCGGGA 58.872 55.000 6.32 0.00 0.00 5.14
1834 1843 1.488812 CATCAGGGATTGTACCGGGAA 59.511 52.381 6.32 0.00 0.00 3.97
1835 1844 1.200519 TCAGGGATTGTACCGGGAAG 58.799 55.000 6.32 0.00 0.00 3.46
1836 1845 0.463833 CAGGGATTGTACCGGGAAGC 60.464 60.000 6.32 0.00 0.00 3.86
1837 1846 0.620700 AGGGATTGTACCGGGAAGCT 60.621 55.000 6.32 0.00 0.00 3.74
1838 1847 0.255033 GGGATTGTACCGGGAAGCTT 59.745 55.000 6.32 0.00 0.00 3.74
1839 1848 1.664873 GGATTGTACCGGGAAGCTTC 58.335 55.000 18.54 18.54 0.00 3.86
1840 1849 1.065709 GGATTGTACCGGGAAGCTTCA 60.066 52.381 27.02 3.96 0.00 3.02
1841 1850 2.617021 GGATTGTACCGGGAAGCTTCAA 60.617 50.000 27.02 12.32 0.00 2.69
1842 1851 2.642154 TTGTACCGGGAAGCTTCAAA 57.358 45.000 27.02 5.19 0.00 2.69
1843 1852 2.871096 TGTACCGGGAAGCTTCAAAT 57.129 45.000 27.02 12.06 0.00 2.32
1844 1853 3.149005 TGTACCGGGAAGCTTCAAATT 57.851 42.857 27.02 11.28 0.00 1.82
1845 1854 3.492337 TGTACCGGGAAGCTTCAAATTT 58.508 40.909 27.02 9.93 0.00 1.82
1846 1855 4.653868 TGTACCGGGAAGCTTCAAATTTA 58.346 39.130 27.02 8.99 0.00 1.40
1847 1856 4.698304 TGTACCGGGAAGCTTCAAATTTAG 59.302 41.667 27.02 10.75 0.00 1.85
1848 1857 3.763057 ACCGGGAAGCTTCAAATTTAGT 58.237 40.909 27.02 11.33 0.00 2.24
1849 1858 4.913784 ACCGGGAAGCTTCAAATTTAGTA 58.086 39.130 27.02 0.00 0.00 1.82
1850 1859 4.698780 ACCGGGAAGCTTCAAATTTAGTAC 59.301 41.667 27.02 6.17 0.00 2.73
1851 1860 4.698304 CCGGGAAGCTTCAAATTTAGTACA 59.302 41.667 27.02 0.00 0.00 2.90
1852 1861 5.163754 CCGGGAAGCTTCAAATTTAGTACAG 60.164 44.000 27.02 6.94 0.00 2.74
1853 1862 5.411669 CGGGAAGCTTCAAATTTAGTACAGT 59.588 40.000 27.02 0.00 0.00 3.55
1854 1863 6.592607 CGGGAAGCTTCAAATTTAGTACAGTA 59.407 38.462 27.02 0.00 0.00 2.74
1855 1864 7.280205 CGGGAAGCTTCAAATTTAGTACAGTAT 59.720 37.037 27.02 0.00 0.00 2.12
1856 1865 8.957466 GGGAAGCTTCAAATTTAGTACAGTATT 58.043 33.333 27.02 0.00 0.00 1.89
1857 1866 9.774742 GGAAGCTTCAAATTTAGTACAGTATTG 57.225 33.333 27.02 0.00 0.00 1.90
1860 1869 9.502091 AGCTTCAAATTTAGTACAGTATTGTGA 57.498 29.630 0.34 0.00 38.23 3.58
1874 1883 8.442632 ACAGTATTGTGATTGATCTATTGTGG 57.557 34.615 0.00 0.00 35.83 4.17
1875 1884 8.049117 ACAGTATTGTGATTGATCTATTGTGGT 58.951 33.333 0.00 0.00 35.83 4.16
1876 1885 9.546428 CAGTATTGTGATTGATCTATTGTGGTA 57.454 33.333 0.00 0.00 0.00 3.25
1880 1889 8.492673 TTGTGATTGATCTATTGTGGTAAGAC 57.507 34.615 0.00 0.00 0.00 3.01
1881 1890 7.619965 TGTGATTGATCTATTGTGGTAAGACA 58.380 34.615 0.00 0.00 0.00 3.41
1882 1891 7.549134 TGTGATTGATCTATTGTGGTAAGACAC 59.451 37.037 0.00 0.00 41.68 3.67
1894 1903 4.706842 GGTAAGACACCCATATGGATGT 57.293 45.455 22.55 22.55 42.07 3.06
1895 1904 5.048846 GGTAAGACACCCATATGGATGTT 57.951 43.478 23.19 10.82 42.07 2.71
1896 1905 4.821805 GGTAAGACACCCATATGGATGTTG 59.178 45.833 23.19 15.26 42.07 3.33
1897 1906 4.591321 AAGACACCCATATGGATGTTGT 57.409 40.909 23.19 18.06 37.39 3.32
1898 1907 3.889815 AGACACCCATATGGATGTTGTG 58.110 45.455 23.19 21.48 38.73 3.33
1899 1908 2.358898 GACACCCATATGGATGTTGTGC 59.641 50.000 23.19 6.56 37.40 4.57
1900 1909 2.291475 ACACCCATATGGATGTTGTGCA 60.291 45.455 24.00 0.00 37.40 4.57
1901 1910 2.099592 CACCCATATGGATGTTGTGCAC 59.900 50.000 24.00 10.75 37.39 4.57
1902 1911 2.025037 ACCCATATGGATGTTGTGCACT 60.025 45.455 24.00 0.00 37.39 4.40
1903 1912 2.620115 CCCATATGGATGTTGTGCACTC 59.380 50.000 24.00 11.68 37.39 3.51
1904 1913 3.548770 CCATATGGATGTTGTGCACTCT 58.451 45.455 17.49 0.00 37.39 3.24
1905 1914 4.444733 CCCATATGGATGTTGTGCACTCTA 60.445 45.833 24.00 5.32 37.39 2.43
1906 1915 5.311265 CCATATGGATGTTGTGCACTCTAT 58.689 41.667 17.49 12.55 37.39 1.98
1907 1916 6.466812 CCATATGGATGTTGTGCACTCTATA 58.533 40.000 17.49 14.28 37.39 1.31
1908 1917 7.108194 CCATATGGATGTTGTGCACTCTATAT 58.892 38.462 17.49 15.80 37.39 0.86
1909 1918 7.609146 CCATATGGATGTTGTGCACTCTATATT 59.391 37.037 17.49 3.22 37.39 1.28
1910 1919 9.006839 CATATGGATGTTGTGCACTCTATATTT 57.993 33.333 19.41 0.00 0.00 1.40
1911 1920 7.886629 ATGGATGTTGTGCACTCTATATTTT 57.113 32.000 19.41 0.00 0.00 1.82
1912 1921 7.087409 TGGATGTTGTGCACTCTATATTTTG 57.913 36.000 19.41 0.00 0.00 2.44
1913 1922 6.658816 TGGATGTTGTGCACTCTATATTTTGT 59.341 34.615 19.41 0.00 0.00 2.83
1914 1923 7.148255 TGGATGTTGTGCACTCTATATTTTGTC 60.148 37.037 19.41 1.47 0.00 3.18
1915 1924 6.494893 TGTTGTGCACTCTATATTTTGTCC 57.505 37.500 19.41 0.00 0.00 4.02
1916 1925 6.000840 TGTTGTGCACTCTATATTTTGTCCA 58.999 36.000 19.41 0.00 0.00 4.02
1917 1926 6.658816 TGTTGTGCACTCTATATTTTGTCCAT 59.341 34.615 19.41 0.00 0.00 3.41
1918 1927 7.826744 TGTTGTGCACTCTATATTTTGTCCATA 59.173 33.333 19.41 0.00 0.00 2.74
1919 1928 8.840321 GTTGTGCACTCTATATTTTGTCCATAT 58.160 33.333 19.41 0.00 0.00 1.78
1944 1953 9.959721 ATAATATAATAGGAAACAAGATGCCGT 57.040 29.630 0.00 0.00 0.00 5.68
1945 1954 8.691661 AATATAATAGGAAACAAGATGCCGTT 57.308 30.769 0.00 0.00 0.00 4.44
1946 1955 9.787435 AATATAATAGGAAACAAGATGCCGTTA 57.213 29.630 0.00 0.00 0.00 3.18
1947 1956 9.787435 ATATAATAGGAAACAAGATGCCGTTAA 57.213 29.630 0.00 0.00 0.00 2.01
1948 1957 6.827586 AATAGGAAACAAGATGCCGTTAAA 57.172 33.333 0.00 0.00 0.00 1.52
1949 1958 7.404671 AATAGGAAACAAGATGCCGTTAAAT 57.595 32.000 0.00 0.00 0.00 1.40
1950 1959 8.514330 AATAGGAAACAAGATGCCGTTAAATA 57.486 30.769 0.00 0.00 0.00 1.40
1951 1960 6.190954 AGGAAACAAGATGCCGTTAAATAC 57.809 37.500 0.00 0.00 0.00 1.89
1952 1961 5.944007 AGGAAACAAGATGCCGTTAAATACT 59.056 36.000 0.00 0.00 0.00 2.12
1953 1962 6.093633 AGGAAACAAGATGCCGTTAAATACTC 59.906 38.462 0.00 0.00 0.00 2.59
1954 1963 5.813080 AACAAGATGCCGTTAAATACTCC 57.187 39.130 0.00 0.00 0.00 3.85
1955 1964 4.839121 ACAAGATGCCGTTAAATACTCCA 58.161 39.130 0.00 0.00 0.00 3.86
1956 1965 5.437060 ACAAGATGCCGTTAAATACTCCAT 58.563 37.500 0.00 0.00 0.00 3.41
1957 1966 6.588204 ACAAGATGCCGTTAAATACTCCATA 58.412 36.000 0.00 0.00 0.00 2.74
1958 1967 7.224297 ACAAGATGCCGTTAAATACTCCATAT 58.776 34.615 0.00 0.00 0.00 1.78
1959 1968 7.173218 ACAAGATGCCGTTAAATACTCCATATG 59.827 37.037 0.00 0.00 0.00 1.78
1960 1969 6.173339 AGATGCCGTTAAATACTCCATATGG 58.827 40.000 16.25 16.25 0.00 2.74
1961 1970 5.554437 TGCCGTTAAATACTCCATATGGA 57.446 39.130 23.17 23.17 43.08 3.41
1975 1984 6.178607 TCCATATGGAGTAGTACGTACTGA 57.821 41.667 33.23 17.31 42.48 3.41
1976 1985 5.994054 TCCATATGGAGTAGTACGTACTGAC 59.006 44.000 33.23 25.17 42.48 3.51
1977 1986 5.107182 CCATATGGAGTAGTACGTACTGACG 60.107 48.000 33.23 13.48 42.48 4.35
1978 1987 7.991381 CCATATGGAGTAGTACGTACTGACGG 61.991 50.000 33.23 17.52 45.60 4.79
2013 2022 3.852286 ACAGACCAATTAATCACGCGTA 58.148 40.909 13.44 0.28 0.00 4.42
2016 2025 2.931325 GACCAATTAATCACGCGTACCA 59.069 45.455 13.44 0.00 0.00 3.25
2018 2027 3.125658 ACCAATTAATCACGCGTACCAAC 59.874 43.478 13.44 0.00 0.00 3.77
2030 2039 2.895062 CGTACCAACGTAACAAGCAAC 58.105 47.619 0.00 0.00 44.21 4.17
2104 2115 2.124695 GATTCCCCGCACCTCCAC 60.125 66.667 0.00 0.00 0.00 4.02
2105 2116 2.610859 ATTCCCCGCACCTCCACT 60.611 61.111 0.00 0.00 0.00 4.00
2106 2117 2.595009 GATTCCCCGCACCTCCACTC 62.595 65.000 0.00 0.00 0.00 3.51
2109 2120 3.322466 CCCGCACCTCCACTCCTT 61.322 66.667 0.00 0.00 0.00 3.36
2110 2121 2.750350 CCGCACCTCCACTCCTTT 59.250 61.111 0.00 0.00 0.00 3.11
2111 2122 1.550130 CCCGCACCTCCACTCCTTTA 61.550 60.000 0.00 0.00 0.00 1.85
2113 2124 1.065418 CCGCACCTCCACTCCTTTATT 60.065 52.381 0.00 0.00 0.00 1.40
2116 2127 3.506067 CGCACCTCCACTCCTTTATTTTT 59.494 43.478 0.00 0.00 0.00 1.94
2117 2128 4.698304 CGCACCTCCACTCCTTTATTTTTA 59.302 41.667 0.00 0.00 0.00 1.52
2118 2129 5.357032 CGCACCTCCACTCCTTTATTTTTAT 59.643 40.000 0.00 0.00 0.00 1.40
2154 2165 7.062605 CAGCCATTCTTTATTTTTAGCACACAG 59.937 37.037 0.00 0.00 0.00 3.66
2167 2178 4.708726 AGCACACAGATCATTTTTAGGC 57.291 40.909 0.00 0.00 0.00 3.93
2322 2394 4.381292 GGGAAATCAATCCTTCTGCAGTTG 60.381 45.833 14.67 10.53 39.57 3.16
2374 2446 2.299013 GGTTAACCCTGAAGCCCTTTTG 59.701 50.000 14.16 0.00 0.00 2.44
2383 2455 3.099141 TGAAGCCCTTTTGATGAATCCC 58.901 45.455 0.00 0.00 0.00 3.85
2419 2491 1.203052 CGTAAGGGCAACTCTAACCGA 59.797 52.381 0.00 0.00 0.00 4.69
2443 2515 6.647461 TCCCTATACATAACGGAGGATCTA 57.353 41.667 0.00 0.00 33.73 1.98
2458 2530 2.296752 GGATCTAGCGGAGTAAACCCTC 59.703 54.545 0.00 0.00 0.00 4.30
2477 2549 4.010349 CCTCAGTGGGACATTTTTACTCC 58.990 47.826 0.00 0.00 44.52 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.828939 TGATCTCAAAACCTTTGCACAGAT 59.171 37.500 0.17 2.98 0.00 2.90
118 120 5.070313 CCCTTCTTGAAAGTTTGAATTCCCA 59.930 40.000 2.27 0.00 0.00 4.37
151 153 2.244486 TGCTCCATCTCCAACTCTCT 57.756 50.000 0.00 0.00 0.00 3.10
377 383 2.773661 TGAGGTGCCATGTGATGTAGAT 59.226 45.455 0.00 0.00 0.00 1.98
378 384 2.093500 GTGAGGTGCCATGTGATGTAGA 60.093 50.000 0.00 0.00 0.00 2.59
430 436 6.717289 ACACACTTCCCACTGCTTATAATAA 58.283 36.000 0.00 0.00 0.00 1.40
439 445 1.200020 GCATAACACACTTCCCACTGC 59.800 52.381 0.00 0.00 0.00 4.40
461 467 3.785122 GAAGTGCACCCGGGGTTGT 62.785 63.158 27.92 0.00 31.02 3.32
507 514 5.261216 TGAGGTTCCATAATCTTTTCCACC 58.739 41.667 0.00 0.00 0.00 4.61
555 562 0.598065 GTGCAAACACCTCCATGGAC 59.402 55.000 11.44 0.00 41.21 4.02
558 565 2.679450 CATTGTGCAAACACCTCCATG 58.321 47.619 0.00 0.00 46.86 3.66
632 639 1.475280 TCCCGAAGAACATACTGGACG 59.525 52.381 0.00 0.00 0.00 4.79
712 719 4.336713 GCTACTTCCTTTGCTATTCCAAGG 59.663 45.833 0.00 0.00 0.00 3.61
807 815 7.208064 AGTTTAACTGGGTCCATATACATGT 57.792 36.000 2.69 2.69 0.00 3.21
850 858 3.554934 CCACCATATGTACCAACATGCT 58.445 45.455 1.24 0.00 45.99 3.79
933 941 8.880878 AACAAAATTCAAGGTTAAAGCGTATT 57.119 26.923 0.00 0.00 0.00 1.89
970 978 4.743348 GCATGTGGAACTTGGGTCAAAATT 60.743 41.667 0.00 0.00 41.80 1.82
992 1000 1.457346 CCAGGAGACCATCTGTTTGC 58.543 55.000 0.00 0.00 0.00 3.68
1128 1137 2.338809 TCTGGGACATGGTCAAGTCTT 58.661 47.619 0.00 0.00 38.20 3.01
1176 1185 4.288626 TGTGCTAGTTTTAGTCCCTCCAAT 59.711 41.667 0.00 0.00 0.00 3.16
1281 1290 1.344953 AATAGGAGCCGCCACCATCA 61.345 55.000 6.92 0.00 40.02 3.07
1331 1340 1.561643 TCTACCACAGCCTTCCTGAG 58.438 55.000 0.00 0.00 44.64 3.35
1381 1390 0.467384 CCCACTGAGCTAGGTCATGG 59.533 60.000 28.33 28.33 0.00 3.66
1387 1396 3.854669 CCGCCCCACTGAGCTAGG 61.855 72.222 0.00 0.00 0.00 3.02
1434 1443 0.326927 AAAGAGGAAATCCGGCGGAA 59.673 50.000 34.58 16.80 42.08 4.30
1504 1513 2.315925 TTGACGAGAAGGCCATCATC 57.684 50.000 11.19 5.44 0.00 2.92
1530 1539 5.460419 GCACAAAAACATAAATGTGGAACGA 59.540 36.000 6.85 0.00 42.56 3.85
1531 1540 5.609269 CGCACAAAAACATAAATGTGGAACG 60.609 40.000 6.85 0.00 42.56 3.95
1532 1541 5.460419 TCGCACAAAAACATAAATGTGGAAC 59.540 36.000 6.85 0.00 42.56 3.62
1533 1542 5.460419 GTCGCACAAAAACATAAATGTGGAA 59.540 36.000 6.85 0.00 42.56 3.53
1534 1543 4.979197 GTCGCACAAAAACATAAATGTGGA 59.021 37.500 6.85 0.74 42.56 4.02
1535 1544 4.742167 TGTCGCACAAAAACATAAATGTGG 59.258 37.500 6.85 0.00 42.56 4.17
1536 1545 5.332205 GGTGTCGCACAAAAACATAAATGTG 60.332 40.000 11.20 0.00 44.55 3.21
1537 1546 4.742659 GGTGTCGCACAAAAACATAAATGT 59.257 37.500 11.20 0.00 38.23 2.71
1538 1547 4.742167 TGGTGTCGCACAAAAACATAAATG 59.258 37.500 11.20 0.00 35.86 2.32
1539 1548 4.742659 GTGGTGTCGCACAAAAACATAAAT 59.257 37.500 11.20 0.00 35.86 1.40
1540 1549 4.106197 GTGGTGTCGCACAAAAACATAAA 58.894 39.130 11.20 0.00 35.86 1.40
1541 1550 3.378742 AGTGGTGTCGCACAAAAACATAA 59.621 39.130 11.20 0.00 35.86 1.90
1542 1551 2.946329 AGTGGTGTCGCACAAAAACATA 59.054 40.909 11.20 0.00 35.86 2.29
1543 1552 1.748493 AGTGGTGTCGCACAAAAACAT 59.252 42.857 11.20 0.00 35.86 2.71
1544 1553 1.169577 AGTGGTGTCGCACAAAAACA 58.830 45.000 11.20 0.00 35.86 2.83
1545 1554 2.271821 AAGTGGTGTCGCACAAAAAC 57.728 45.000 11.20 4.94 35.86 2.43
1546 1555 2.097791 GGTAAGTGGTGTCGCACAAAAA 59.902 45.455 11.20 0.00 35.86 1.94
1547 1556 1.671845 GGTAAGTGGTGTCGCACAAAA 59.328 47.619 11.20 0.00 35.86 2.44
1548 1557 1.301423 GGTAAGTGGTGTCGCACAAA 58.699 50.000 11.20 0.00 35.86 2.83
1549 1558 0.178301 TGGTAAGTGGTGTCGCACAA 59.822 50.000 11.20 0.00 35.86 3.33
1550 1559 0.394938 ATGGTAAGTGGTGTCGCACA 59.605 50.000 11.20 0.00 35.86 4.57
1551 1560 1.076332 GATGGTAAGTGGTGTCGCAC 58.924 55.000 1.92 1.92 0.00 5.34
1552 1561 0.973632 AGATGGTAAGTGGTGTCGCA 59.026 50.000 0.00 0.00 0.00 5.10
1553 1562 1.732259 CAAGATGGTAAGTGGTGTCGC 59.268 52.381 0.00 0.00 0.00 5.19
1554 1563 3.040147 ACAAGATGGTAAGTGGTGTCG 57.960 47.619 0.00 0.00 0.00 4.35
1555 1564 5.767816 AAAACAAGATGGTAAGTGGTGTC 57.232 39.130 0.00 0.00 0.00 3.67
1556 1565 7.833285 ATAAAAACAAGATGGTAAGTGGTGT 57.167 32.000 0.00 0.00 0.00 4.16
1557 1566 8.141268 ACAATAAAAACAAGATGGTAAGTGGTG 58.859 33.333 0.00 0.00 0.00 4.17
1558 1567 8.245195 ACAATAAAAACAAGATGGTAAGTGGT 57.755 30.769 0.00 0.00 0.00 4.16
1559 1568 9.620660 GTACAATAAAAACAAGATGGTAAGTGG 57.379 33.333 0.00 0.00 0.00 4.00
1560 1569 9.325150 CGTACAATAAAAACAAGATGGTAAGTG 57.675 33.333 0.00 0.00 0.00 3.16
1561 1570 8.508875 CCGTACAATAAAAACAAGATGGTAAGT 58.491 33.333 0.00 0.00 0.00 2.24
1562 1571 7.966204 CCCGTACAATAAAAACAAGATGGTAAG 59.034 37.037 0.00 0.00 0.00 2.34
1563 1572 7.664731 TCCCGTACAATAAAAACAAGATGGTAA 59.335 33.333 0.00 0.00 0.00 2.85
1564 1573 7.166851 TCCCGTACAATAAAAACAAGATGGTA 58.833 34.615 0.00 0.00 0.00 3.25
1565 1574 6.005198 TCCCGTACAATAAAAACAAGATGGT 58.995 36.000 0.00 0.00 0.00 3.55
1566 1575 6.503589 TCCCGTACAATAAAAACAAGATGG 57.496 37.500 0.00 0.00 0.00 3.51
1567 1576 9.716507 CTATTCCCGTACAATAAAAACAAGATG 57.283 33.333 0.00 0.00 0.00 2.90
1568 1577 8.899771 CCTATTCCCGTACAATAAAAACAAGAT 58.100 33.333 0.00 0.00 0.00 2.40
1569 1578 7.884354 ACCTATTCCCGTACAATAAAAACAAGA 59.116 33.333 0.00 0.00 0.00 3.02
1570 1579 7.966204 CACCTATTCCCGTACAATAAAAACAAG 59.034 37.037 0.00 0.00 0.00 3.16
1571 1580 7.664731 TCACCTATTCCCGTACAATAAAAACAA 59.335 33.333 0.00 0.00 0.00 2.83
1572 1581 7.166851 TCACCTATTCCCGTACAATAAAAACA 58.833 34.615 0.00 0.00 0.00 2.83
1573 1582 7.335171 ACTCACCTATTCCCGTACAATAAAAAC 59.665 37.037 0.00 0.00 0.00 2.43
1574 1583 7.334921 CACTCACCTATTCCCGTACAATAAAAA 59.665 37.037 0.00 0.00 0.00 1.94
1575 1584 6.819649 CACTCACCTATTCCCGTACAATAAAA 59.180 38.462 0.00 0.00 0.00 1.52
1576 1585 6.070653 ACACTCACCTATTCCCGTACAATAAA 60.071 38.462 0.00 0.00 0.00 1.40
1577 1586 5.422970 ACACTCACCTATTCCCGTACAATAA 59.577 40.000 0.00 0.00 0.00 1.40
1578 1587 4.957954 ACACTCACCTATTCCCGTACAATA 59.042 41.667 0.00 0.00 0.00 1.90
1579 1588 3.773119 ACACTCACCTATTCCCGTACAAT 59.227 43.478 0.00 0.00 0.00 2.71
1580 1589 3.056393 CACACTCACCTATTCCCGTACAA 60.056 47.826 0.00 0.00 0.00 2.41
1581 1590 2.494471 CACACTCACCTATTCCCGTACA 59.506 50.000 0.00 0.00 0.00 2.90
1582 1591 2.159142 CCACACTCACCTATTCCCGTAC 60.159 54.545 0.00 0.00 0.00 3.67
1583 1592 2.104967 CCACACTCACCTATTCCCGTA 58.895 52.381 0.00 0.00 0.00 4.02
1584 1593 0.902531 CCACACTCACCTATTCCCGT 59.097 55.000 0.00 0.00 0.00 5.28
1585 1594 0.178068 CCCACACTCACCTATTCCCG 59.822 60.000 0.00 0.00 0.00 5.14
1586 1595 0.546598 CCCCACACTCACCTATTCCC 59.453 60.000 0.00 0.00 0.00 3.97
1587 1596 1.486726 CTCCCCACACTCACCTATTCC 59.513 57.143 0.00 0.00 0.00 3.01
1588 1597 2.432510 CTCTCCCCACACTCACCTATTC 59.567 54.545 0.00 0.00 0.00 1.75
1589 1598 2.472029 CTCTCCCCACACTCACCTATT 58.528 52.381 0.00 0.00 0.00 1.73
1590 1599 1.343478 CCTCTCCCCACACTCACCTAT 60.343 57.143 0.00 0.00 0.00 2.57
1591 1600 0.041238 CCTCTCCCCACACTCACCTA 59.959 60.000 0.00 0.00 0.00 3.08
1592 1601 1.229336 CCTCTCCCCACACTCACCT 60.229 63.158 0.00 0.00 0.00 4.00
1593 1602 2.294078 CCCTCTCCCCACACTCACC 61.294 68.421 0.00 0.00 0.00 4.02
1594 1603 0.836400 TTCCCTCTCCCCACACTCAC 60.836 60.000 0.00 0.00 0.00 3.51
1595 1604 0.545309 CTTCCCTCTCCCCACACTCA 60.545 60.000 0.00 0.00 0.00 3.41
1596 1605 1.268283 CCTTCCCTCTCCCCACACTC 61.268 65.000 0.00 0.00 0.00 3.51
1597 1606 1.229658 CCTTCCCTCTCCCCACACT 60.230 63.158 0.00 0.00 0.00 3.55
1598 1607 2.301738 CCCTTCCCTCTCCCCACAC 61.302 68.421 0.00 0.00 0.00 3.82
1599 1608 2.124996 CCCTTCCCTCTCCCCACA 59.875 66.667 0.00 0.00 0.00 4.17
1600 1609 1.996187 GACCCTTCCCTCTCCCCAC 60.996 68.421 0.00 0.00 0.00 4.61
1601 1610 0.858598 TAGACCCTTCCCTCTCCCCA 60.859 60.000 0.00 0.00 0.00 4.96
1602 1611 0.105401 CTAGACCCTTCCCTCTCCCC 60.105 65.000 0.00 0.00 0.00 4.81
1603 1612 0.935194 TCTAGACCCTTCCCTCTCCC 59.065 60.000 0.00 0.00 0.00 4.30
1604 1613 1.756333 GCTCTAGACCCTTCCCTCTCC 60.756 61.905 0.00 0.00 0.00 3.71
1605 1614 1.699730 GCTCTAGACCCTTCCCTCTC 58.300 60.000 0.00 0.00 0.00 3.20
1606 1615 0.263468 GGCTCTAGACCCTTCCCTCT 59.737 60.000 0.00 0.00 0.00 3.69
1607 1616 0.032017 TGGCTCTAGACCCTTCCCTC 60.032 60.000 5.67 0.00 0.00 4.30
1608 1617 0.644937 ATGGCTCTAGACCCTTCCCT 59.355 55.000 5.67 0.00 0.00 4.20
1609 1618 1.141858 CAATGGCTCTAGACCCTTCCC 59.858 57.143 5.67 0.00 0.00 3.97
1610 1619 2.103941 CTCAATGGCTCTAGACCCTTCC 59.896 54.545 5.67 0.00 0.00 3.46
1611 1620 2.484594 GCTCAATGGCTCTAGACCCTTC 60.485 54.545 5.67 0.00 0.00 3.46
1612 1621 1.488393 GCTCAATGGCTCTAGACCCTT 59.512 52.381 5.67 0.00 0.00 3.95
1613 1622 1.127343 GCTCAATGGCTCTAGACCCT 58.873 55.000 5.67 0.00 0.00 4.34
1614 1623 1.127343 AGCTCAATGGCTCTAGACCC 58.873 55.000 0.00 0.00 38.24 4.46
1615 1624 2.298729 CCTAGCTCAATGGCTCTAGACC 59.701 54.545 0.00 0.00 42.97 3.85
1616 1625 2.298729 CCCTAGCTCAATGGCTCTAGAC 59.701 54.545 0.00 0.00 42.97 2.59
1617 1626 2.177888 TCCCTAGCTCAATGGCTCTAGA 59.822 50.000 0.00 0.00 42.97 2.43
1618 1627 2.603021 TCCCTAGCTCAATGGCTCTAG 58.397 52.381 0.00 0.00 42.97 2.43
1619 1628 2.775490 TCCCTAGCTCAATGGCTCTA 57.225 50.000 0.00 0.00 42.97 2.43
1620 1629 1.767681 CTTCCCTAGCTCAATGGCTCT 59.232 52.381 0.00 0.00 42.97 4.09
1621 1630 1.488393 ACTTCCCTAGCTCAATGGCTC 59.512 52.381 0.00 0.00 42.97 4.70
1622 1631 1.211457 CACTTCCCTAGCTCAATGGCT 59.789 52.381 0.00 2.15 45.29 4.75
1623 1632 1.065126 ACACTTCCCTAGCTCAATGGC 60.065 52.381 0.00 0.00 0.00 4.40
1624 1633 2.237143 TCACACTTCCCTAGCTCAATGG 59.763 50.000 0.00 0.00 0.00 3.16
1625 1634 3.616956 TCACACTTCCCTAGCTCAATG 57.383 47.619 0.00 0.00 0.00 2.82
1626 1635 4.851639 AATCACACTTCCCTAGCTCAAT 57.148 40.909 0.00 0.00 0.00 2.57
1627 1636 4.640771 AAATCACACTTCCCTAGCTCAA 57.359 40.909 0.00 0.00 0.00 3.02
1628 1637 4.640771 AAAATCACACTTCCCTAGCTCA 57.359 40.909 0.00 0.00 0.00 4.26
1649 1658 0.658897 GTGTCGCAACGGGAGAAAAA 59.341 50.000 0.00 0.00 0.00 1.94
1650 1659 0.462225 TGTGTCGCAACGGGAGAAAA 60.462 50.000 0.00 0.00 0.00 2.29
1651 1660 1.144276 TGTGTCGCAACGGGAGAAA 59.856 52.632 0.00 0.00 0.00 2.52
1652 1661 1.593209 GTGTGTCGCAACGGGAGAA 60.593 57.895 0.00 0.00 0.00 2.87
1653 1662 2.028484 GTGTGTCGCAACGGGAGA 59.972 61.111 0.00 0.00 0.00 3.71
1654 1663 1.831389 CTTGTGTGTCGCAACGGGAG 61.831 60.000 0.00 0.00 30.44 4.30
1655 1664 1.885388 CTTGTGTGTCGCAACGGGA 60.885 57.895 0.00 0.00 30.44 5.14
1656 1665 2.631428 CTTGTGTGTCGCAACGGG 59.369 61.111 0.00 0.00 30.44 5.28
1657 1666 2.052237 GCTTGTGTGTCGCAACGG 60.052 61.111 0.00 0.00 30.44 4.44
1658 1667 0.522286 TTTGCTTGTGTGTCGCAACG 60.522 50.000 0.00 0.00 42.65 4.10
1659 1668 1.838913 ATTTGCTTGTGTGTCGCAAC 58.161 45.000 0.00 0.00 42.65 4.17
1660 1669 2.575694 AATTTGCTTGTGTGTCGCAA 57.424 40.000 0.00 0.00 41.41 4.85
1661 1670 2.191802 CAAATTTGCTTGTGTGTCGCA 58.808 42.857 5.01 0.00 0.00 5.10
1662 1671 2.909076 CAAATTTGCTTGTGTGTCGC 57.091 45.000 5.01 0.00 0.00 5.19
1674 1683 6.867662 ATATCGAAGGGAGTAGCAAATTTG 57.132 37.500 14.03 14.03 0.00 2.32
1675 1684 8.974060 TTTATATCGAAGGGAGTAGCAAATTT 57.026 30.769 0.00 0.00 0.00 1.82
1676 1685 8.974060 TTTTATATCGAAGGGAGTAGCAAATT 57.026 30.769 0.00 0.00 0.00 1.82
1679 1688 9.706691 CTTATTTTATATCGAAGGGAGTAGCAA 57.293 33.333 0.00 0.00 0.00 3.91
1680 1689 8.867097 ACTTATTTTATATCGAAGGGAGTAGCA 58.133 33.333 0.00 0.00 0.00 3.49
1681 1690 9.141400 CACTTATTTTATATCGAAGGGAGTAGC 57.859 37.037 0.00 0.00 0.00 3.58
1684 1693 9.712305 CATCACTTATTTTATATCGAAGGGAGT 57.288 33.333 0.00 0.00 33.28 3.85
1685 1694 9.712305 ACATCACTTATTTTATATCGAAGGGAG 57.288 33.333 0.00 0.00 33.28 4.30
1686 1695 9.489084 CACATCACTTATTTTATATCGAAGGGA 57.511 33.333 0.00 0.00 34.24 4.20
1687 1696 8.721478 CCACATCACTTATTTTATATCGAAGGG 58.279 37.037 0.00 0.00 0.00 3.95
1688 1697 9.273016 ACCACATCACTTATTTTATATCGAAGG 57.727 33.333 0.00 0.00 0.00 3.46
1698 1707 9.829507 TTGAAATGAAACCACATCACTTATTTT 57.170 25.926 0.00 0.00 0.00 1.82
1699 1708 9.829507 TTTGAAATGAAACCACATCACTTATTT 57.170 25.926 0.00 0.00 0.00 1.40
1702 1711 9.258826 CAATTTGAAATGAAACCACATCACTTA 57.741 29.630 0.00 0.00 0.00 2.24
1703 1712 7.986320 TCAATTTGAAATGAAACCACATCACTT 59.014 29.630 0.00 0.00 0.00 3.16
1704 1713 7.499292 TCAATTTGAAATGAAACCACATCACT 58.501 30.769 0.00 0.00 0.00 3.41
1705 1714 7.712264 TCAATTTGAAATGAAACCACATCAC 57.288 32.000 0.00 0.00 0.00 3.06
1706 1715 7.986320 ACTTCAATTTGAAATGAAACCACATCA 59.014 29.630 12.62 0.00 35.73 3.07
1707 1716 8.369218 ACTTCAATTTGAAATGAAACCACATC 57.631 30.769 12.62 0.00 35.73 3.06
1708 1717 9.480053 CTACTTCAATTTGAAATGAAACCACAT 57.520 29.630 12.62 0.00 35.73 3.21
1709 1718 8.474025 ACTACTTCAATTTGAAATGAAACCACA 58.526 29.630 12.62 0.00 35.73 4.17
1710 1719 8.871686 ACTACTTCAATTTGAAATGAAACCAC 57.128 30.769 12.62 0.00 35.73 4.16
1711 1720 9.959749 GTACTACTTCAATTTGAAATGAAACCA 57.040 29.630 12.62 0.00 35.73 3.67
1712 1721 9.959749 TGTACTACTTCAATTTGAAATGAAACC 57.040 29.630 12.62 0.85 35.73 3.27
1733 1742 9.636789 TGGTACTGATGTATGTTAGTATGTACT 57.363 33.333 0.00 0.00 40.24 2.73
1734 1743 9.674824 GTGGTACTGATGTATGTTAGTATGTAC 57.325 37.037 0.00 0.00 0.00 2.90
1735 1744 8.562052 CGTGGTACTGATGTATGTTAGTATGTA 58.438 37.037 0.00 0.00 0.00 2.29
1736 1745 7.283807 TCGTGGTACTGATGTATGTTAGTATGT 59.716 37.037 0.00 0.00 0.00 2.29
1737 1746 7.645402 TCGTGGTACTGATGTATGTTAGTATG 58.355 38.462 0.00 0.00 0.00 2.39
1738 1747 7.812690 TCGTGGTACTGATGTATGTTAGTAT 57.187 36.000 0.00 0.00 0.00 2.12
1739 1748 7.499895 TCATCGTGGTACTGATGTATGTTAGTA 59.500 37.037 17.00 0.00 42.05 1.82
1740 1749 6.320418 TCATCGTGGTACTGATGTATGTTAGT 59.680 38.462 17.00 0.00 42.05 2.24
1741 1750 6.637254 GTCATCGTGGTACTGATGTATGTTAG 59.363 42.308 17.00 0.00 42.05 2.34
1742 1751 6.500910 GTCATCGTGGTACTGATGTATGTTA 58.499 40.000 17.00 1.89 42.05 2.41
1743 1752 5.348986 GTCATCGTGGTACTGATGTATGTT 58.651 41.667 17.00 0.00 42.05 2.71
1744 1753 4.497507 CGTCATCGTGGTACTGATGTATGT 60.498 45.833 17.00 0.00 42.05 2.29
1745 1754 3.975035 CGTCATCGTGGTACTGATGTATG 59.025 47.826 17.00 9.65 42.05 2.39
1746 1755 3.550233 GCGTCATCGTGGTACTGATGTAT 60.550 47.826 17.00 0.00 42.05 2.29
1747 1756 2.223409 GCGTCATCGTGGTACTGATGTA 60.223 50.000 17.00 7.01 42.05 2.29
1748 1757 1.469251 GCGTCATCGTGGTACTGATGT 60.469 52.381 17.00 0.00 42.05 3.06
1749 1758 1.200483 GCGTCATCGTGGTACTGATG 58.800 55.000 13.58 13.58 42.61 3.07
1750 1759 0.815095 TGCGTCATCGTGGTACTGAT 59.185 50.000 0.00 0.00 39.49 2.90
1751 1760 0.815095 ATGCGTCATCGTGGTACTGA 59.185 50.000 0.00 0.00 39.49 3.41
1752 1761 1.200483 GATGCGTCATCGTGGTACTG 58.800 55.000 0.00 0.00 39.49 2.74
1753 1762 0.815095 TGATGCGTCATCGTGGTACT 59.185 50.000 3.97 0.00 43.14 2.73
1754 1763 1.852942 ATGATGCGTCATCGTGGTAC 58.147 50.000 15.87 0.00 41.16 3.34
1762 1771 0.599466 CTCTGGCGATGATGCGTCAT 60.599 55.000 21.36 21.36 45.56 3.06
1763 1772 1.227060 CTCTGGCGATGATGCGTCA 60.227 57.895 11.83 11.83 44.42 4.35
1764 1773 1.227089 ACTCTGGCGATGATGCGTC 60.227 57.895 0.00 0.00 36.22 5.19
1765 1774 1.520120 CACTCTGGCGATGATGCGT 60.520 57.895 0.00 0.00 35.06 5.24
1766 1775 0.249031 TACACTCTGGCGATGATGCG 60.249 55.000 0.00 0.00 35.06 4.73
1767 1776 1.212616 GTACACTCTGGCGATGATGC 58.787 55.000 0.00 0.00 0.00 3.91
1768 1777 2.584492 TGTACACTCTGGCGATGATG 57.416 50.000 0.00 0.00 0.00 3.07
1769 1778 2.497675 ACTTGTACACTCTGGCGATGAT 59.502 45.455 0.00 0.00 0.00 2.45
1770 1779 1.893137 ACTTGTACACTCTGGCGATGA 59.107 47.619 0.00 0.00 0.00 2.92
1771 1780 2.263077 GACTTGTACACTCTGGCGATG 58.737 52.381 0.00 0.00 0.00 3.84
1772 1781 1.893137 TGACTTGTACACTCTGGCGAT 59.107 47.619 0.00 0.00 0.00 4.58
1773 1782 1.269723 CTGACTTGTACACTCTGGCGA 59.730 52.381 0.00 0.00 0.00 5.54
1774 1783 1.000163 ACTGACTTGTACACTCTGGCG 60.000 52.381 0.00 0.00 0.00 5.69
1775 1784 2.821991 ACTGACTTGTACACTCTGGC 57.178 50.000 0.00 0.00 0.00 4.85
1776 1785 8.088981 ACTAATTAACTGACTTGTACACTCTGG 58.911 37.037 0.00 0.00 0.00 3.86
1777 1786 9.130312 GACTAATTAACTGACTTGTACACTCTG 57.870 37.037 0.00 0.11 0.00 3.35
1778 1787 8.305317 GGACTAATTAACTGACTTGTACACTCT 58.695 37.037 0.00 0.00 0.00 3.24
1779 1788 8.305317 AGGACTAATTAACTGACTTGTACACTC 58.695 37.037 0.00 0.00 0.00 3.51
1780 1789 8.191534 AGGACTAATTAACTGACTTGTACACT 57.808 34.615 0.00 0.00 0.00 3.55
1781 1790 8.305317 AGAGGACTAATTAACTGACTTGTACAC 58.695 37.037 0.00 0.00 0.00 2.90
1782 1791 8.418597 AGAGGACTAATTAACTGACTTGTACA 57.581 34.615 0.00 0.00 0.00 2.90
1785 1794 9.708092 GTTTAGAGGACTAATTAACTGACTTGT 57.292 33.333 0.00 0.00 38.23 3.16
1786 1795 9.706691 TGTTTAGAGGACTAATTAACTGACTTG 57.293 33.333 0.00 0.00 38.23 3.16
1788 1797 9.708092 GTTGTTTAGAGGACTAATTAACTGACT 57.292 33.333 0.00 0.00 38.23 3.41
1789 1798 9.485206 TGTTGTTTAGAGGACTAATTAACTGAC 57.515 33.333 0.25 0.00 38.23 3.51
1794 1803 9.667107 CCTGATGTTGTTTAGAGGACTAATTAA 57.333 33.333 0.00 0.00 38.23 1.40
1795 1804 8.265055 CCCTGATGTTGTTTAGAGGACTAATTA 58.735 37.037 0.00 0.00 38.23 1.40
1796 1805 7.037586 TCCCTGATGTTGTTTAGAGGACTAATT 60.038 37.037 0.00 0.00 38.23 1.40
1797 1806 6.443849 TCCCTGATGTTGTTTAGAGGACTAAT 59.556 38.462 0.00 0.00 38.23 1.73
1798 1807 5.783360 TCCCTGATGTTGTTTAGAGGACTAA 59.217 40.000 0.00 0.00 36.90 2.24
1799 1808 5.338632 TCCCTGATGTTGTTTAGAGGACTA 58.661 41.667 0.00 0.00 0.00 2.59
1800 1809 4.168101 TCCCTGATGTTGTTTAGAGGACT 58.832 43.478 0.00 0.00 0.00 3.85
1801 1810 4.553330 TCCCTGATGTTGTTTAGAGGAC 57.447 45.455 0.00 0.00 0.00 3.85
1802 1811 5.014123 ACAATCCCTGATGTTGTTTAGAGGA 59.986 40.000 0.00 0.00 32.53 3.71
1803 1812 5.256474 ACAATCCCTGATGTTGTTTAGAGG 58.744 41.667 0.00 0.00 32.53 3.69
1804 1813 6.316390 GGTACAATCCCTGATGTTGTTTAGAG 59.684 42.308 0.00 0.00 37.30 2.43
1805 1814 6.177610 GGTACAATCCCTGATGTTGTTTAGA 58.822 40.000 0.00 0.00 37.30 2.10
1806 1815 5.064707 CGGTACAATCCCTGATGTTGTTTAG 59.935 44.000 0.00 0.00 37.30 1.85
1807 1816 4.938832 CGGTACAATCCCTGATGTTGTTTA 59.061 41.667 0.00 0.00 37.30 2.01
1808 1817 3.756434 CGGTACAATCCCTGATGTTGTTT 59.244 43.478 0.00 0.00 37.30 2.83
1809 1818 3.343617 CGGTACAATCCCTGATGTTGTT 58.656 45.455 0.00 0.00 37.30 2.83
1810 1819 2.355716 CCGGTACAATCCCTGATGTTGT 60.356 50.000 0.00 0.00 39.26 3.32
1811 1820 2.288666 CCGGTACAATCCCTGATGTTG 58.711 52.381 0.00 0.00 0.00 3.33
1812 1821 1.211949 CCCGGTACAATCCCTGATGTT 59.788 52.381 0.00 0.00 0.00 2.71
1813 1822 0.837272 CCCGGTACAATCCCTGATGT 59.163 55.000 0.00 0.00 0.00 3.06
1814 1823 1.128200 TCCCGGTACAATCCCTGATG 58.872 55.000 0.00 0.00 0.00 3.07
1815 1824 1.768870 CTTCCCGGTACAATCCCTGAT 59.231 52.381 0.00 0.00 0.00 2.90
1816 1825 1.200519 CTTCCCGGTACAATCCCTGA 58.799 55.000 0.00 0.00 0.00 3.86
1817 1826 0.463833 GCTTCCCGGTACAATCCCTG 60.464 60.000 0.00 0.00 0.00 4.45
1818 1827 0.620700 AGCTTCCCGGTACAATCCCT 60.621 55.000 0.00 0.00 0.00 4.20
1819 1828 0.255033 AAGCTTCCCGGTACAATCCC 59.745 55.000 0.00 0.00 0.00 3.85
1820 1829 1.065709 TGAAGCTTCCCGGTACAATCC 60.066 52.381 23.42 0.00 0.00 3.01
1821 1830 2.396590 TGAAGCTTCCCGGTACAATC 57.603 50.000 23.42 0.00 0.00 2.67
1822 1831 2.871096 TTGAAGCTTCCCGGTACAAT 57.129 45.000 23.42 0.00 0.00 2.71
1823 1832 2.642154 TTTGAAGCTTCCCGGTACAA 57.358 45.000 23.42 7.17 0.00 2.41
1824 1833 2.871096 ATTTGAAGCTTCCCGGTACA 57.129 45.000 23.42 0.47 0.00 2.90
1825 1834 4.698780 ACTAAATTTGAAGCTTCCCGGTAC 59.301 41.667 23.42 0.00 0.00 3.34
1826 1835 4.913784 ACTAAATTTGAAGCTTCCCGGTA 58.086 39.130 23.42 8.53 0.00 4.02
1827 1836 3.763057 ACTAAATTTGAAGCTTCCCGGT 58.237 40.909 23.42 9.61 0.00 5.28
1828 1837 4.698304 TGTACTAAATTTGAAGCTTCCCGG 59.302 41.667 23.42 9.03 0.00 5.73
1829 1838 5.411669 ACTGTACTAAATTTGAAGCTTCCCG 59.588 40.000 23.42 6.58 0.00 5.14
1830 1839 6.819397 ACTGTACTAAATTTGAAGCTTCCC 57.181 37.500 23.42 0.62 0.00 3.97
1831 1840 9.774742 CAATACTGTACTAAATTTGAAGCTTCC 57.225 33.333 23.42 6.48 0.00 3.46
1834 1843 9.502091 TCACAATACTGTACTAAATTTGAAGCT 57.498 29.630 0.00 0.00 33.22 3.74
1848 1857 9.546428 CCACAATAGATCAATCACAATACTGTA 57.454 33.333 0.00 0.00 33.22 2.74
1849 1858 8.049117 ACCACAATAGATCAATCACAATACTGT 58.951 33.333 0.00 0.00 35.63 3.55
1850 1859 8.442632 ACCACAATAGATCAATCACAATACTG 57.557 34.615 0.00 0.00 0.00 2.74
1854 1863 9.113838 GTCTTACCACAATAGATCAATCACAAT 57.886 33.333 0.00 0.00 0.00 2.71
1855 1864 8.100164 TGTCTTACCACAATAGATCAATCACAA 58.900 33.333 0.00 0.00 0.00 3.33
1856 1865 7.549134 GTGTCTTACCACAATAGATCAATCACA 59.451 37.037 0.00 0.00 35.38 3.58
1857 1866 7.910304 GTGTCTTACCACAATAGATCAATCAC 58.090 38.462 0.00 0.00 35.38 3.06
1881 1890 2.025037 AGTGCACAACATCCATATGGGT 60.025 45.455 21.78 12.51 37.43 4.51
1882 1891 2.620115 GAGTGCACAACATCCATATGGG 59.380 50.000 21.78 9.11 37.43 4.00
1883 1892 3.548770 AGAGTGCACAACATCCATATGG 58.451 45.455 21.04 16.25 37.43 2.74
1884 1893 8.557592 AATATAGAGTGCACAACATCCATATG 57.442 34.615 21.04 0.00 39.17 1.78
1885 1894 9.578576 AAAATATAGAGTGCACAACATCCATAT 57.421 29.630 21.04 8.99 0.00 1.78
1886 1895 8.839343 CAAAATATAGAGTGCACAACATCCATA 58.161 33.333 21.04 6.99 0.00 2.74
1887 1896 7.340232 ACAAAATATAGAGTGCACAACATCCAT 59.660 33.333 21.04 4.83 0.00 3.41
1888 1897 6.658816 ACAAAATATAGAGTGCACAACATCCA 59.341 34.615 21.04 0.00 0.00 3.41
1889 1898 7.088589 ACAAAATATAGAGTGCACAACATCC 57.911 36.000 21.04 0.57 0.00 3.51
1890 1899 7.148255 TGGACAAAATATAGAGTGCACAACATC 60.148 37.037 21.04 7.72 0.00 3.06
1891 1900 6.658816 TGGACAAAATATAGAGTGCACAACAT 59.341 34.615 21.04 10.69 0.00 2.71
1892 1901 6.000840 TGGACAAAATATAGAGTGCACAACA 58.999 36.000 21.04 2.90 0.00 3.33
1893 1902 6.494893 TGGACAAAATATAGAGTGCACAAC 57.505 37.500 21.04 12.64 0.00 3.32
1894 1903 8.978874 ATATGGACAAAATATAGAGTGCACAA 57.021 30.769 21.04 4.13 35.19 3.33
1918 1927 9.959721 ACGGCATCTTGTTTCCTATTATATTAT 57.040 29.630 0.00 0.00 0.00 1.28
1919 1928 9.787435 AACGGCATCTTGTTTCCTATTATATTA 57.213 29.630 0.00 0.00 0.00 0.98
1920 1929 8.691661 AACGGCATCTTGTTTCCTATTATATT 57.308 30.769 0.00 0.00 0.00 1.28
1921 1930 9.787435 TTAACGGCATCTTGTTTCCTATTATAT 57.213 29.630 0.00 0.00 0.00 0.86
1922 1931 9.616156 TTTAACGGCATCTTGTTTCCTATTATA 57.384 29.630 0.00 0.00 0.00 0.98
1923 1932 8.514330 TTTAACGGCATCTTGTTTCCTATTAT 57.486 30.769 0.00 0.00 0.00 1.28
1924 1933 7.925043 TTTAACGGCATCTTGTTTCCTATTA 57.075 32.000 0.00 0.00 0.00 0.98
1925 1934 6.827586 TTTAACGGCATCTTGTTTCCTATT 57.172 33.333 0.00 0.00 0.00 1.73
1926 1935 7.773690 AGTATTTAACGGCATCTTGTTTCCTAT 59.226 33.333 0.00 0.00 0.00 2.57
1927 1936 7.107542 AGTATTTAACGGCATCTTGTTTCCTA 58.892 34.615 0.00 0.00 0.00 2.94
1928 1937 5.944007 AGTATTTAACGGCATCTTGTTTCCT 59.056 36.000 0.00 0.00 0.00 3.36
1929 1938 6.190954 AGTATTTAACGGCATCTTGTTTCC 57.809 37.500 0.00 0.00 0.00 3.13
1930 1939 6.128117 TGGAGTATTTAACGGCATCTTGTTTC 60.128 38.462 0.00 0.00 0.00 2.78
1931 1940 5.708230 TGGAGTATTTAACGGCATCTTGTTT 59.292 36.000 0.00 0.00 0.00 2.83
1932 1941 5.250200 TGGAGTATTTAACGGCATCTTGTT 58.750 37.500 0.00 0.00 0.00 2.83
1933 1942 4.839121 TGGAGTATTTAACGGCATCTTGT 58.161 39.130 0.00 0.00 0.00 3.16
1934 1943 7.361201 CCATATGGAGTATTTAACGGCATCTTG 60.361 40.741 17.49 0.00 37.39 3.02
1935 1944 6.655003 CCATATGGAGTATTTAACGGCATCTT 59.345 38.462 17.49 0.00 37.39 2.40
1936 1945 6.013725 TCCATATGGAGTATTTAACGGCATCT 60.014 38.462 20.98 0.00 39.78 2.90
1937 1946 6.170506 TCCATATGGAGTATTTAACGGCATC 58.829 40.000 20.98 0.00 39.78 3.91
1938 1947 6.121776 TCCATATGGAGTATTTAACGGCAT 57.878 37.500 20.98 0.00 39.78 4.40
1939 1948 5.554437 TCCATATGGAGTATTTAACGGCA 57.446 39.130 20.98 0.00 39.78 5.69
1952 1961 5.994054 GTCAGTACGTACTACTCCATATGGA 59.006 44.000 26.95 23.17 36.95 3.41
1953 1962 5.107182 CGTCAGTACGTACTACTCCATATGG 60.107 48.000 26.95 16.25 44.21 2.74
1954 1963 5.913637 CGTCAGTACGTACTACTCCATATG 58.086 45.833 26.95 12.85 44.21 1.78
1969 1978 8.931385 TGTTAATTAATTACTCCCGTCAGTAC 57.069 34.615 7.43 0.37 0.00 2.73
1970 1979 8.970020 TCTGTTAATTAATTACTCCCGTCAGTA 58.030 33.333 7.43 0.00 0.00 2.74
1971 1980 7.763071 GTCTGTTAATTAATTACTCCCGTCAGT 59.237 37.037 7.43 0.00 0.00 3.41
1972 1981 7.224167 GGTCTGTTAATTAATTACTCCCGTCAG 59.776 40.741 7.43 7.92 0.00 3.51
1973 1982 7.043565 GGTCTGTTAATTAATTACTCCCGTCA 58.956 38.462 7.43 0.00 0.00 4.35
1974 1983 7.043565 TGGTCTGTTAATTAATTACTCCCGTC 58.956 38.462 7.43 0.00 0.00 4.79
1975 1984 6.949715 TGGTCTGTTAATTAATTACTCCCGT 58.050 36.000 7.43 0.00 0.00 5.28
1976 1985 7.852971 TTGGTCTGTTAATTAATTACTCCCG 57.147 36.000 7.43 0.00 0.00 5.14
1984 1993 9.730420 GCGTGATTAATTGGTCTGTTAATTAAT 57.270 29.630 12.25 12.25 45.21 1.40
1985 1994 7.906010 CGCGTGATTAATTGGTCTGTTAATTAA 59.094 33.333 0.00 0.00 40.77 1.40
1986 1995 7.064847 ACGCGTGATTAATTGGTCTGTTAATTA 59.935 33.333 12.93 0.00 32.31 1.40
1987 1996 6.128117 ACGCGTGATTAATTGGTCTGTTAATT 60.128 34.615 12.93 0.00 32.31 1.40
1988 1997 5.353123 ACGCGTGATTAATTGGTCTGTTAAT 59.647 36.000 12.93 0.00 34.23 1.40
1989 1998 4.691685 ACGCGTGATTAATTGGTCTGTTAA 59.308 37.500 12.93 0.00 0.00 2.01
1990 1999 4.247258 ACGCGTGATTAATTGGTCTGTTA 58.753 39.130 12.93 0.00 0.00 2.41
1991 2000 3.071479 ACGCGTGATTAATTGGTCTGTT 58.929 40.909 12.93 0.00 0.00 3.16
1992 2001 2.695359 ACGCGTGATTAATTGGTCTGT 58.305 42.857 12.93 0.00 0.00 3.41
1993 2002 3.000925 GGTACGCGTGATTAATTGGTCTG 59.999 47.826 24.59 0.00 0.00 3.51
1994 2003 3.192466 GGTACGCGTGATTAATTGGTCT 58.808 45.455 24.59 0.00 0.00 3.85
1995 2004 2.931325 TGGTACGCGTGATTAATTGGTC 59.069 45.455 24.59 0.00 0.00 4.02
1996 2005 2.975266 TGGTACGCGTGATTAATTGGT 58.025 42.857 24.59 0.00 0.00 3.67
1997 2006 3.676540 GTTGGTACGCGTGATTAATTGG 58.323 45.455 24.59 0.00 0.00 3.16
1998 2007 3.338839 CGTTGGTACGCGTGATTAATTG 58.661 45.455 24.59 0.63 41.41 2.32
2013 2022 0.658897 CCGTTGCTTGTTACGTTGGT 59.341 50.000 0.00 0.00 36.09 3.67
2016 2025 1.167781 CCCCCGTTGCTTGTTACGTT 61.168 55.000 0.00 0.00 36.09 3.99
2018 2027 1.598685 ACCCCCGTTGCTTGTTACG 60.599 57.895 0.00 0.00 37.50 3.18
2019 2028 0.820482 ACACCCCCGTTGCTTGTTAC 60.820 55.000 0.00 0.00 0.00 2.50
2022 2031 1.072505 CTACACCCCCGTTGCTTGT 59.927 57.895 0.00 0.00 0.00 3.16
2025 2034 2.928396 AGCTACACCCCCGTTGCT 60.928 61.111 0.00 0.00 42.04 3.91
2029 2038 1.048601 CATATGAGCTACACCCCCGT 58.951 55.000 0.00 0.00 0.00 5.28
2030 2039 0.321671 CCATATGAGCTACACCCCCG 59.678 60.000 3.65 0.00 0.00 5.73
2167 2178 7.546667 CCCAAAACAAAGGAAATGTCAGATATG 59.453 37.037 0.00 0.00 0.00 1.78
2289 2361 6.745794 AGGATTGATTTCCCAAGTCAAAAA 57.254 33.333 0.00 0.00 36.35 1.94
2322 2394 1.217244 CAAGCCTGCAAGCATTCCC 59.783 57.895 10.50 0.00 34.23 3.97
2353 2425 2.299013 CAAAAGGGCTTCAGGGTTAACC 59.701 50.000 16.85 16.85 40.67 2.85
2357 2429 2.158325 TCATCAAAAGGGCTTCAGGGTT 60.158 45.455 0.00 0.00 0.00 4.11
2369 2441 4.025360 TGGTCCATGGGATTCATCAAAAG 58.975 43.478 13.02 0.00 32.73 2.27
2374 2446 2.363359 GCTTTGGTCCATGGGATTCATC 59.637 50.000 13.02 0.00 32.73 2.92
2383 2455 3.564511 CTTACGTTTGCTTTGGTCCATG 58.435 45.455 0.00 0.00 0.00 3.66
2419 2491 6.093617 AGATCCTCCGTTATGTATAGGGAT 57.906 41.667 0.00 0.00 35.38 3.85
2443 2515 0.608640 CACTGAGGGTTTACTCCGCT 59.391 55.000 0.00 0.00 36.66 5.52
2458 2530 4.766404 GTGGAGTAAAAATGTCCCACTG 57.234 45.455 0.00 0.00 40.48 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.