Multiple sequence alignment - TraesCS7A01G000200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G000200 chr7A 100.000 5044 0 0 1 5044 246625 241582 0.000000e+00 9315.0
1 TraesCS7A01G000200 chr7A 94.660 412 22 0 4312 4723 611542484 611542073 1.530000e-179 640.0
2 TraesCS7A01G000200 chr7A 82.072 251 38 6 4706 4954 720556306 720556061 1.840000e-49 207.0
3 TraesCS7A01G000200 chr7D 91.567 1755 55 32 883 2615 211858 210175 0.000000e+00 2335.0
4 TraesCS7A01G000200 chr7D 89.808 1717 55 39 2612 4296 209815 208187 0.000000e+00 2091.0
5 TraesCS7A01G000200 chr7D 82.543 464 27 25 345 777 212525 212085 4.800000e-95 359.0
6 TraesCS7A01G000200 chr7D 81.818 363 35 14 2619 2976 50071892 50072228 4.970000e-70 276.0
7 TraesCS7A01G000200 chr7D 83.673 245 38 2 4712 4954 394295713 394295957 3.930000e-56 230.0
8 TraesCS7A01G000200 chr4A 90.382 759 37 5 4312 5044 744534931 744535679 0.000000e+00 965.0
9 TraesCS7A01G000200 chr4A 87.591 137 3 6 2612 2734 744531830 744531966 4.070000e-31 147.0
10 TraesCS7A01G000200 chr4A 82.979 141 16 5 634 772 744530800 744530934 2.470000e-23 121.0
11 TraesCS7A01G000200 chr4A 93.421 76 0 2 3694 3764 744533679 744533754 1.920000e-19 108.0
12 TraesCS7A01G000200 chr4A 76.190 147 26 8 50 193 661024124 661023984 9.060000e-08 69.4
13 TraesCS7A01G000200 chr5A 94.245 417 23 1 4312 4727 588413080 588412664 1.980000e-178 636.0
14 TraesCS7A01G000200 chr5A 77.551 245 36 12 2617 2856 672325215 672324985 4.100000e-26 130.0
15 TraesCS7A01G000200 chr5A 77.143 245 35 12 2617 2856 375561732 375561504 6.860000e-24 122.0
16 TraesCS7A01G000200 chr7B 94.175 412 24 0 4312 4723 191525896 191526307 3.310000e-176 628.0
17 TraesCS7A01G000200 chr7B 84.923 325 20 10 2614 2927 645198205 645198511 8.210000e-78 302.0
18 TraesCS7A01G000200 chr7B 83.841 328 39 11 3031 3357 645199873 645200187 2.950000e-77 300.0
19 TraesCS7A01G000200 chr7B 80.506 395 48 19 1731 2115 645197234 645197609 4.970000e-70 276.0
20 TraesCS7A01G000200 chr7B 82.353 340 22 9 2614 2942 645199126 645199438 1.390000e-65 261.0
21 TraesCS7A01G000200 chr7B 80.159 378 39 17 2611 2976 639062793 639063146 3.020000e-62 250.0
22 TraesCS7A01G000200 chr7B 83.193 119 20 0 2614 2732 579521354 579521472 5.340000e-20 110.0
23 TraesCS7A01G000200 chr7B 97.826 46 1 0 3047 3092 645199010 645199055 4.190000e-11 80.5
24 TraesCS7A01G000200 chr7B 91.071 56 5 0 2513 2568 639062353 639062408 5.420000e-10 76.8
25 TraesCS7A01G000200 chr7B 95.745 47 0 2 2512 2558 645197767 645197811 1.950000e-09 75.0
26 TraesCS7A01G000200 chr3B 93.947 413 24 1 4312 4723 741345782 741345370 1.540000e-174 623.0
27 TraesCS7A01G000200 chr3B 93.447 412 26 1 4312 4723 662533800 662534210 1.200000e-170 610.0
28 TraesCS7A01G000200 chr3B 76.987 717 86 41 3022 3697 824290147 824290825 2.250000e-88 337.0
29 TraesCS7A01G000200 chr3B 86.634 202 27 0 4753 4954 212706473 212706272 1.830000e-54 224.0
30 TraesCS7A01G000200 chr3B 85.484 62 4 4 2513 2571 165429472 165429413 5.450000e-05 60.2
31 TraesCS7A01G000200 chr3A 93.689 412 26 0 4312 4723 52480128 52480539 7.170000e-173 617.0
32 TraesCS7A01G000200 chr3A 82.051 117 15 4 5 120 430870331 430870442 1.490000e-15 95.3
33 TraesCS7A01G000200 chr3A 100.000 36 0 0 158 193 60070538 60070573 3.260000e-07 67.6
34 TraesCS7A01G000200 chr2B 93.447 412 27 0 4312 4723 742090137 742090548 3.340000e-171 612.0
35 TraesCS7A01G000200 chr2B 93.447 412 26 1 4312 4723 615258555 615258965 1.200000e-170 610.0
36 TraesCS7A01G000200 chr2B 82.292 96 10 5 2 90 464458493 464458588 5.420000e-10 76.8
37 TraesCS7A01G000200 chr3D 77.730 705 93 37 3022 3697 615224157 615224826 1.710000e-99 374.0
38 TraesCS7A01G000200 chrUn 85.675 363 22 12 2614 2964 162262416 162262760 6.210000e-94 355.0
39 TraesCS7A01G000200 chrUn 82.317 328 39 9 3031 3355 162263155 162263466 2.990000e-67 267.0
40 TraesCS7A01G000200 chrUn 77.388 513 70 29 3694 4186 162264457 162264943 3.870000e-66 263.0
41 TraesCS7A01G000200 chrUn 82.041 245 38 5 4712 4954 117237599 117237359 2.380000e-48 204.0
42 TraesCS7A01G000200 chrUn 79.730 296 36 13 3407 3697 162264096 162264372 5.150000e-45 193.0
43 TraesCS7A01G000200 chrUn 79.679 187 31 6 10 193 26919899 26920081 1.470000e-25 128.0
44 TraesCS7A01G000200 chrUn 82.759 116 9 8 1956 2071 162261911 162262015 5.380000e-15 93.5
45 TraesCS7A01G000200 chr1B 79.371 572 64 34 1550 2114 687091924 687091400 2.230000e-93 353.0
46 TraesCS7A01G000200 chr1B 83.702 362 25 15 2619 2968 687090718 687090379 1.360000e-80 311.0
47 TraesCS7A01G000200 chr1B 82.440 336 40 7 3022 3356 687090033 687089716 4.970000e-70 276.0
48 TraesCS7A01G000200 chr1B 80.323 371 35 19 3694 4045 687088893 687088542 3.900000e-61 246.0
49 TraesCS7A01G000200 chr1B 77.016 248 38 12 2614 2856 9085484 9085717 1.910000e-24 124.0
50 TraesCS7A01G000200 chr2A 89.256 242 26 0 4713 4954 46545956 46546197 2.280000e-78 303.0
51 TraesCS7A01G000200 chr2A 83.036 112 19 0 3033 3144 748462939 748463050 8.930000e-18 102.0
52 TraesCS7A01G000200 chr2A 75.676 148 31 4 50 194 16290653 16290798 9.060000e-08 69.4
53 TraesCS7A01G000200 chr6B 80.387 362 40 17 2617 2972 113766978 113766642 3.900000e-61 246.0
54 TraesCS7A01G000200 chr6B 78.063 351 42 17 4720 5044 427187695 427187354 6.670000e-44 189.0
55 TraesCS7A01G000200 chr6A 83.966 237 35 3 4718 4954 473092170 473092403 1.830000e-54 224.0
56 TraesCS7A01G000200 chr6A 83.262 233 36 3 4722 4954 262163538 262163767 1.420000e-50 211.0
57 TraesCS7A01G000200 chr6A 84.259 108 13 3 10 117 509554232 509554129 8.930000e-18 102.0
58 TraesCS7A01G000200 chr4B 84.034 238 33 5 4718 4954 442613805 442613572 1.830000e-54 224.0
59 TraesCS7A01G000200 chr1A 77.551 245 36 12 2617 2856 543477894 543477664 4.100000e-26 130.0
60 TraesCS7A01G000200 chr5B 81.633 147 22 4 50 193 466993062 466992918 3.190000e-22 117.0
61 TraesCS7A01G000200 chr5B 77.612 201 33 11 2 193 77666923 77666726 1.480000e-20 111.0
62 TraesCS7A01G000200 chr4D 83.333 72 9 3 126 195 416864211 416864281 4.220000e-06 63.9
63 TraesCS7A01G000200 chr2D 80.263 76 12 3 47 120 450202428 450202502 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G000200 chr7A 241582 246625 5043 True 9315.00 9315 100.000000 1 5044 1 chr7A.!!$R1 5043
1 TraesCS7A01G000200 chr7D 208187 212525 4338 True 1595.00 2335 87.972667 345 4296 3 chr7D.!!$R1 3951
2 TraesCS7A01G000200 chr4A 744530800 744535679 4879 False 335.25 965 88.593250 634 5044 4 chr4A.!!$F1 4410
3 TraesCS7A01G000200 chr7B 645197234 645200187 2953 False 215.75 302 87.532333 1731 3357 6 chr7B.!!$F4 1626
4 TraesCS7A01G000200 chr3B 824290147 824290825 678 False 337.00 337 76.987000 3022 3697 1 chr3B.!!$F2 675
5 TraesCS7A01G000200 chr3D 615224157 615224826 669 False 374.00 374 77.730000 3022 3697 1 chr3D.!!$F1 675
6 TraesCS7A01G000200 chrUn 162261911 162264943 3032 False 234.30 355 81.573800 1956 4186 5 chrUn.!!$F2 2230
7 TraesCS7A01G000200 chr1B 687088542 687091924 3382 True 296.50 353 81.459000 1550 4045 4 chr1B.!!$R1 2495

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
396 399 0.026803 GGAGACGCACGCATTCATTC 59.973 55.0 0.00 0.00 0.00 2.67 F
1184 1596 0.029300 GATGCACACACACACACACC 59.971 55.0 0.00 0.00 0.00 4.16 F
1192 1604 0.033366 CACACACACACCTCGATCCA 59.967 55.0 0.00 0.00 0.00 3.41 F
1193 1605 0.033504 ACACACACACCTCGATCCAC 59.966 55.0 0.00 0.00 0.00 4.02 F
2315 2766 0.036022 ACTGGAGCAGCAGTTCCTTC 59.964 55.0 13.07 0.00 44.72 3.46 F
3794 8213 0.104855 GTGAGTGCACACAGTCCTCA 59.895 55.0 21.04 9.16 44.37 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1894 2318 0.250038 CTGCCTACATGATCCCCACG 60.250 60.000 0.0 0.0 0.00 4.94 R
3045 5798 1.093159 GAGCACATCCTCCTGCAAAG 58.907 55.000 0.0 0.0 35.73 2.77 R
3137 6777 4.217836 TCTGAGCAGAGCAAAAGATGAT 57.782 40.909 0.0 0.0 32.82 2.45 R
3160 6800 7.410120 TCAGTCTGTCATTCTGTATGTATGT 57.590 36.000 0.0 0.0 35.64 2.29 R
3860 8296 0.032130 TCACGAACCTGCACTCACTC 59.968 55.000 0.0 0.0 0.00 3.51 R
4880 10104 1.064003 TCAAGGGCAAGTTAGCTCCA 58.936 50.000 0.0 0.0 34.85 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.515081 CCACTTTTACTTTCGCCGGA 58.485 50.000 5.05 0.00 0.00 5.14
20 21 1.463444 CCACTTTTACTTTCGCCGGAG 59.537 52.381 5.05 0.00 0.00 4.63
21 22 1.136057 CACTTTTACTTTCGCCGGAGC 60.136 52.381 5.05 0.00 0.00 4.70
22 23 0.446616 CTTTTACTTTCGCCGGAGCC 59.553 55.000 5.05 0.00 34.57 4.70
23 24 0.956902 TTTTACTTTCGCCGGAGCCC 60.957 55.000 5.05 0.00 34.57 5.19
24 25 2.808181 TTTACTTTCGCCGGAGCCCC 62.808 60.000 5.05 0.00 34.57 5.80
52 53 4.138487 CCCCCTGTAGTGTATTGAGTTC 57.862 50.000 0.00 0.00 0.00 3.01
53 54 3.430374 CCCCCTGTAGTGTATTGAGTTCG 60.430 52.174 0.00 0.00 0.00 3.95
54 55 3.430374 CCCCTGTAGTGTATTGAGTTCGG 60.430 52.174 0.00 0.00 0.00 4.30
55 56 3.187700 CCTGTAGTGTATTGAGTTCGGC 58.812 50.000 0.00 0.00 0.00 5.54
56 57 3.187700 CTGTAGTGTATTGAGTTCGGCC 58.812 50.000 0.00 0.00 0.00 6.13
57 58 2.829720 TGTAGTGTATTGAGTTCGGCCT 59.170 45.455 0.00 0.00 0.00 5.19
58 59 2.386661 AGTGTATTGAGTTCGGCCTG 57.613 50.000 0.00 0.00 0.00 4.85
59 60 1.066143 AGTGTATTGAGTTCGGCCTGG 60.066 52.381 0.00 0.00 0.00 4.45
60 61 0.251916 TGTATTGAGTTCGGCCTGGG 59.748 55.000 0.00 0.00 0.00 4.45
61 62 0.539986 GTATTGAGTTCGGCCTGGGA 59.460 55.000 0.00 0.00 0.00 4.37
62 63 1.141053 GTATTGAGTTCGGCCTGGGAT 59.859 52.381 0.00 0.00 0.00 3.85
63 64 0.181350 ATTGAGTTCGGCCTGGGATC 59.819 55.000 0.00 0.00 0.00 3.36
64 65 1.198094 TTGAGTTCGGCCTGGGATCA 61.198 55.000 0.00 0.00 0.00 2.92
65 66 1.153349 GAGTTCGGCCTGGGATCAC 60.153 63.158 0.00 0.00 0.00 3.06
66 67 2.124695 GTTCGGCCTGGGATCACC 60.125 66.667 0.00 0.00 40.81 4.02
67 68 3.781307 TTCGGCCTGGGATCACCG 61.781 66.667 0.00 3.62 46.97 4.94
73 74 3.727258 CTGGGATCACCGGGCCAA 61.727 66.667 6.32 0.00 44.64 4.52
74 75 3.260888 TGGGATCACCGGGCCAAA 61.261 61.111 6.32 0.00 44.64 3.28
75 76 2.036572 GGGATCACCGGGCCAAAA 59.963 61.111 6.32 0.00 36.97 2.44
76 77 1.608046 GGGATCACCGGGCCAAAAA 60.608 57.895 6.32 0.00 36.97 1.94
77 78 0.975556 GGGATCACCGGGCCAAAAAT 60.976 55.000 6.32 0.00 36.97 1.82
78 79 0.175531 GGATCACCGGGCCAAAAATG 59.824 55.000 6.32 0.00 0.00 2.32
79 80 0.175531 GATCACCGGGCCAAAAATGG 59.824 55.000 6.32 0.00 0.00 3.16
80 81 0.544120 ATCACCGGGCCAAAAATGGT 60.544 50.000 6.32 0.00 0.00 3.55
81 82 1.182385 TCACCGGGCCAAAAATGGTC 61.182 55.000 6.32 0.00 0.00 4.02
84 85 4.105388 GGGCCAAAAATGGTCCGA 57.895 55.556 4.39 0.00 44.65 4.55
85 86 2.356992 GGGCCAAAAATGGTCCGAA 58.643 52.632 4.39 0.00 44.65 4.30
86 87 0.682292 GGGCCAAAAATGGTCCGAAA 59.318 50.000 4.39 0.00 44.65 3.46
87 88 1.606994 GGGCCAAAAATGGTCCGAAAC 60.607 52.381 4.39 0.00 44.65 2.78
88 89 1.414378 GCCAAAAATGGTCCGAAACG 58.586 50.000 0.00 0.00 0.00 3.60
99 100 2.398036 CGAAACGGCGGAATTCGG 59.602 61.111 26.10 8.57 41.52 4.30
106 107 3.564027 GCGGAATTCGGCGTCCTG 61.564 66.667 20.42 4.80 39.69 3.86
107 108 2.183300 CGGAATTCGGCGTCCTGA 59.817 61.111 6.85 0.00 34.75 3.86
108 109 1.878522 CGGAATTCGGCGTCCTGAG 60.879 63.158 6.85 0.00 34.75 3.35
109 110 1.521681 GGAATTCGGCGTCCTGAGG 60.522 63.158 6.85 0.00 0.00 3.86
110 111 1.521681 GAATTCGGCGTCCTGAGGG 60.522 63.158 6.85 0.00 0.00 4.30
111 112 3.682292 AATTCGGCGTCCTGAGGGC 62.682 63.158 6.85 0.00 38.23 5.19
118 119 4.803426 GTCCTGAGGGCGCGACTG 62.803 72.222 13.91 0.00 0.00 3.51
121 122 4.379243 CTGAGGGCGCGACTGGTT 62.379 66.667 13.91 0.00 0.00 3.67
122 123 3.883744 CTGAGGGCGCGACTGGTTT 62.884 63.158 13.91 0.00 0.00 3.27
123 124 2.668550 GAGGGCGCGACTGGTTTT 60.669 61.111 13.91 0.00 0.00 2.43
124 125 2.203294 AGGGCGCGACTGGTTTTT 60.203 55.556 13.91 0.00 0.00 1.94
160 161 3.439008 AAAAACGGCGTCTTGGGG 58.561 55.556 15.17 0.00 0.00 4.96
161 162 2.197605 AAAAACGGCGTCTTGGGGG 61.198 57.895 15.17 0.00 0.00 5.40
186 187 4.864334 GGGGTGCGGCTGGAGATG 62.864 72.222 0.00 0.00 0.00 2.90
188 189 4.479993 GGTGCGGCTGGAGATGCT 62.480 66.667 0.00 0.00 0.00 3.79
189 190 2.894387 GTGCGGCTGGAGATGCTC 60.894 66.667 0.00 0.00 0.00 4.26
190 191 3.079478 TGCGGCTGGAGATGCTCT 61.079 61.111 0.00 0.00 0.00 4.09
191 192 1.758122 TGCGGCTGGAGATGCTCTA 60.758 57.895 0.00 0.00 0.00 2.43
192 193 1.329913 TGCGGCTGGAGATGCTCTAA 61.330 55.000 0.00 0.00 0.00 2.10
193 194 0.599728 GCGGCTGGAGATGCTCTAAG 60.600 60.000 0.00 0.00 0.00 2.18
194 195 1.035923 CGGCTGGAGATGCTCTAAGA 58.964 55.000 0.00 0.00 0.00 2.10
195 196 1.269517 CGGCTGGAGATGCTCTAAGAC 60.270 57.143 0.00 0.00 0.00 3.01
196 197 1.759445 GGCTGGAGATGCTCTAAGACA 59.241 52.381 0.00 0.00 0.00 3.41
197 198 2.169352 GGCTGGAGATGCTCTAAGACAA 59.831 50.000 0.00 0.00 0.00 3.18
198 199 3.456280 GCTGGAGATGCTCTAAGACAAG 58.544 50.000 0.00 0.00 0.00 3.16
199 200 3.456280 CTGGAGATGCTCTAAGACAAGC 58.544 50.000 0.00 0.00 39.02 4.01
204 205 2.169832 TGCTCTAAGACAAGCACCAC 57.830 50.000 0.00 0.00 43.30 4.16
205 206 1.270839 TGCTCTAAGACAAGCACCACC 60.271 52.381 0.00 0.00 43.30 4.61
206 207 1.946283 GCTCTAAGACAAGCACCACCC 60.946 57.143 0.00 0.00 38.42 4.61
207 208 1.625818 CTCTAAGACAAGCACCACCCT 59.374 52.381 0.00 0.00 0.00 4.34
208 209 1.347707 TCTAAGACAAGCACCACCCTG 59.652 52.381 0.00 0.00 0.00 4.45
209 210 1.347707 CTAAGACAAGCACCACCCTGA 59.652 52.381 0.00 0.00 0.00 3.86
210 211 0.550914 AAGACAAGCACCACCCTGAA 59.449 50.000 0.00 0.00 0.00 3.02
211 212 0.773644 AGACAAGCACCACCCTGAAT 59.226 50.000 0.00 0.00 0.00 2.57
212 213 1.145738 AGACAAGCACCACCCTGAATT 59.854 47.619 0.00 0.00 0.00 2.17
213 214 1.963515 GACAAGCACCACCCTGAATTT 59.036 47.619 0.00 0.00 0.00 1.82
214 215 1.963515 ACAAGCACCACCCTGAATTTC 59.036 47.619 0.00 0.00 0.00 2.17
215 216 1.962807 CAAGCACCACCCTGAATTTCA 59.037 47.619 0.00 0.00 0.00 2.69
216 217 1.915141 AGCACCACCCTGAATTTCAG 58.085 50.000 17.78 17.78 43.91 3.02
217 218 1.145738 AGCACCACCCTGAATTTCAGT 59.854 47.619 21.75 5.69 42.80 3.41
218 219 1.963515 GCACCACCCTGAATTTCAGTT 59.036 47.619 21.75 8.42 42.80 3.16
219 220 2.365293 GCACCACCCTGAATTTCAGTTT 59.635 45.455 21.75 8.10 42.80 2.66
220 221 3.181466 GCACCACCCTGAATTTCAGTTTT 60.181 43.478 21.75 5.90 42.80 2.43
221 222 4.683129 GCACCACCCTGAATTTCAGTTTTT 60.683 41.667 21.75 3.74 42.80 1.94
273 274 9.701355 GTATTTGATTTTGTTTGTTCTGTTTGG 57.299 29.630 0.00 0.00 0.00 3.28
274 275 6.734104 TTGATTTTGTTTGTTCTGTTTGGG 57.266 33.333 0.00 0.00 0.00 4.12
275 276 6.042638 TGATTTTGTTTGTTCTGTTTGGGA 57.957 33.333 0.00 0.00 0.00 4.37
276 277 6.467677 TGATTTTGTTTGTTCTGTTTGGGAA 58.532 32.000 0.00 0.00 0.00 3.97
277 278 7.108847 TGATTTTGTTTGTTCTGTTTGGGAAT 58.891 30.769 0.00 0.00 0.00 3.01
278 279 7.609532 TGATTTTGTTTGTTCTGTTTGGGAATT 59.390 29.630 0.00 0.00 0.00 2.17
279 280 7.751768 TTTTGTTTGTTCTGTTTGGGAATTT 57.248 28.000 0.00 0.00 0.00 1.82
280 281 7.751768 TTTGTTTGTTCTGTTTGGGAATTTT 57.248 28.000 0.00 0.00 0.00 1.82
281 282 7.751768 TTGTTTGTTCTGTTTGGGAATTTTT 57.248 28.000 0.00 0.00 0.00 1.94
303 304 7.513371 TTTTATTGGTGACGGTGATTTTAGT 57.487 32.000 0.00 0.00 0.00 2.24
304 305 8.618702 TTTTATTGGTGACGGTGATTTTAGTA 57.381 30.769 0.00 0.00 0.00 1.82
305 306 7.837202 TTATTGGTGACGGTGATTTTAGTAG 57.163 36.000 0.00 0.00 0.00 2.57
306 307 4.877378 TGGTGACGGTGATTTTAGTAGT 57.123 40.909 0.00 0.00 0.00 2.73
307 308 5.217978 TGGTGACGGTGATTTTAGTAGTT 57.782 39.130 0.00 0.00 0.00 2.24
308 309 5.613329 TGGTGACGGTGATTTTAGTAGTTT 58.387 37.500 0.00 0.00 0.00 2.66
309 310 5.697633 TGGTGACGGTGATTTTAGTAGTTTC 59.302 40.000 0.00 0.00 0.00 2.78
310 311 5.697633 GGTGACGGTGATTTTAGTAGTTTCA 59.302 40.000 0.00 0.00 0.00 2.69
311 312 6.370718 GGTGACGGTGATTTTAGTAGTTTCAT 59.629 38.462 0.00 0.00 0.00 2.57
312 313 7.094933 GGTGACGGTGATTTTAGTAGTTTCATT 60.095 37.037 0.00 0.00 0.00 2.57
313 314 8.287503 GTGACGGTGATTTTAGTAGTTTCATTT 58.712 33.333 0.00 0.00 0.00 2.32
314 315 8.842280 TGACGGTGATTTTAGTAGTTTCATTTT 58.158 29.630 0.00 0.00 0.00 1.82
315 316 9.673454 GACGGTGATTTTAGTAGTTTCATTTTT 57.327 29.630 0.00 0.00 0.00 1.94
354 355 9.190317 AGGAGTAGTATTTTGGATTTGGATTTC 57.810 33.333 0.00 0.00 0.00 2.17
379 380 1.215673 TGCCTACCAAACCAAAGTGGA 59.784 47.619 0.18 0.00 40.96 4.02
393 396 2.027073 GTGGAGACGCACGCATTCA 61.027 57.895 0.00 0.00 41.67 2.57
394 397 1.079197 TGGAGACGCACGCATTCAT 60.079 52.632 0.00 0.00 0.00 2.57
396 399 0.026803 GGAGACGCACGCATTCATTC 59.973 55.000 0.00 0.00 0.00 2.67
398 401 1.062525 GACGCACGCATTCATTCCC 59.937 57.895 0.00 0.00 0.00 3.97
399 402 1.369091 GACGCACGCATTCATTCCCT 61.369 55.000 0.00 0.00 0.00 4.20
401 404 0.171007 CGCACGCATTCATTCCCTTT 59.829 50.000 0.00 0.00 0.00 3.11
402 405 1.632422 GCACGCATTCATTCCCTTTG 58.368 50.000 0.00 0.00 0.00 2.77
403 406 1.736696 GCACGCATTCATTCCCTTTGG 60.737 52.381 0.00 0.00 0.00 3.28
404 407 1.818060 CACGCATTCATTCCCTTTGGA 59.182 47.619 0.00 0.00 39.54 3.53
405 408 2.428171 CACGCATTCATTCCCTTTGGAT 59.572 45.455 0.00 0.00 41.40 3.41
407 410 2.954318 CGCATTCATTCCCTTTGGATCT 59.046 45.455 0.00 0.00 41.40 2.75
411 414 5.443283 CATTCATTCCCTTTGGATCTCTCA 58.557 41.667 0.00 0.00 41.40 3.27
412 415 4.494091 TCATTCCCTTTGGATCTCTCAC 57.506 45.455 0.00 0.00 41.40 3.51
413 416 4.107072 TCATTCCCTTTGGATCTCTCACT 58.893 43.478 0.00 0.00 41.40 3.41
435 438 2.104792 CCACTTTGGTTCCTCACTCTCA 59.895 50.000 0.00 0.00 31.35 3.27
436 439 3.134458 CACTTTGGTTCCTCACTCTCAC 58.866 50.000 0.00 0.00 0.00 3.51
437 440 2.224066 ACTTTGGTTCCTCACTCTCACG 60.224 50.000 0.00 0.00 0.00 4.35
438 441 0.033504 TTGGTTCCTCACTCTCACGC 59.966 55.000 0.00 0.00 0.00 5.34
439 442 0.827925 TGGTTCCTCACTCTCACGCT 60.828 55.000 0.00 0.00 0.00 5.07
440 443 0.389166 GGTTCCTCACTCTCACGCTG 60.389 60.000 0.00 0.00 0.00 5.18
474 477 1.062505 ACCAATCTCTCCTCCTCCCTC 60.063 57.143 0.00 0.00 0.00 4.30
475 478 1.715785 CAATCTCTCCTCCTCCCTCC 58.284 60.000 0.00 0.00 0.00 4.30
476 479 0.565674 AATCTCTCCTCCTCCCTCCC 59.434 60.000 0.00 0.00 0.00 4.30
477 480 0.330431 ATCTCTCCTCCTCCCTCCCT 60.330 60.000 0.00 0.00 0.00 4.20
554 557 4.371231 CCCCTCCCCTCCCCTTGT 62.371 72.222 0.00 0.00 0.00 3.16
555 558 2.792222 CCCTCCCCTCCCCTTGTA 59.208 66.667 0.00 0.00 0.00 2.41
651 679 3.767902 AGCCAGCCTAGATTCAGATTC 57.232 47.619 0.00 0.00 0.00 2.52
693 723 4.084889 TCTCATCTCTTTTCGTCACTCG 57.915 45.455 0.00 0.00 41.41 4.18
797 892 8.659491 GCAGTTTCTTTCTTTCTTGATTTGTTT 58.341 29.630 0.00 0.00 0.00 2.83
836 940 6.195600 TGTACTGTACCAAGGAAAGGAAAT 57.804 37.500 14.91 0.00 0.00 2.17
866 970 6.712095 GGAAAGGAAAGCAAAGGAAATGAAAT 59.288 34.615 0.00 0.00 0.00 2.17
872 976 6.549912 AAGCAAAGGAAATGAAATGAAAGC 57.450 33.333 0.00 0.00 0.00 3.51
877 981 9.369904 GCAAAGGAAATGAAATGAAAGCTATAA 57.630 29.630 0.00 0.00 0.00 0.98
965 1342 0.392193 AGCAAGGAAGCATGAGACCG 60.392 55.000 0.00 0.00 36.85 4.79
971 1348 2.835701 GAAGCATGAGACCGACCGCA 62.836 60.000 0.00 0.00 0.00 5.69
973 1350 2.261361 CATGAGACCGACCGCACA 59.739 61.111 0.00 0.00 0.00 4.57
1155 1567 7.201803 CCTCTTCATTTCATTCAATTCCTCCTC 60.202 40.741 0.00 0.00 0.00 3.71
1165 1577 2.170187 CAATTCCTCCTCTCCTGTCCTG 59.830 54.545 0.00 0.00 0.00 3.86
1169 1581 0.752054 CTCCTCTCCTGTCCTGATGC 59.248 60.000 0.00 0.00 0.00 3.91
1170 1582 0.041684 TCCTCTCCTGTCCTGATGCA 59.958 55.000 0.00 0.00 0.00 3.96
1172 1584 0.900421 CTCTCCTGTCCTGATGCACA 59.100 55.000 0.00 0.00 0.00 4.57
1173 1585 0.610174 TCTCCTGTCCTGATGCACAC 59.390 55.000 0.00 0.00 0.00 3.82
1175 1587 0.035317 TCCTGTCCTGATGCACACAC 59.965 55.000 0.00 0.00 0.00 3.82
1176 1588 0.250424 CCTGTCCTGATGCACACACA 60.250 55.000 0.00 0.00 0.00 3.72
1180 1592 0.179936 TCCTGATGCACACACACACA 59.820 50.000 0.00 0.00 0.00 3.72
1181 1593 0.308684 CCTGATGCACACACACACAC 59.691 55.000 0.00 0.00 0.00 3.82
1182 1594 1.015868 CTGATGCACACACACACACA 58.984 50.000 0.00 0.00 0.00 3.72
1183 1595 0.731994 TGATGCACACACACACACAC 59.268 50.000 0.00 0.00 0.00 3.82
1184 1596 0.029300 GATGCACACACACACACACC 59.971 55.000 0.00 0.00 0.00 4.16
1185 1597 0.394216 ATGCACACACACACACACCT 60.394 50.000 0.00 0.00 0.00 4.00
1186 1598 1.024046 TGCACACACACACACACCTC 61.024 55.000 0.00 0.00 0.00 3.85
1187 1599 2.005995 CACACACACACACACCTCG 58.994 57.895 0.00 0.00 0.00 4.63
1188 1600 0.459411 CACACACACACACACCTCGA 60.459 55.000 0.00 0.00 0.00 4.04
1189 1601 0.464036 ACACACACACACACCTCGAT 59.536 50.000 0.00 0.00 0.00 3.59
1190 1602 1.139989 CACACACACACACCTCGATC 58.860 55.000 0.00 0.00 0.00 3.69
1191 1603 0.033504 ACACACACACACCTCGATCC 59.966 55.000 0.00 0.00 0.00 3.36
1192 1604 0.033366 CACACACACACCTCGATCCA 59.967 55.000 0.00 0.00 0.00 3.41
1193 1605 0.033504 ACACACACACCTCGATCCAC 59.966 55.000 0.00 0.00 0.00 4.02
1194 1606 0.670546 CACACACACCTCGATCCACC 60.671 60.000 0.00 0.00 0.00 4.61
1195 1607 0.832135 ACACACACCTCGATCCACCT 60.832 55.000 0.00 0.00 0.00 4.00
1196 1608 0.321671 CACACACCTCGATCCACCTT 59.678 55.000 0.00 0.00 0.00 3.50
1219 1631 2.161486 GTCTGCAGACATCGACCGC 61.161 63.158 36.23 10.49 44.18 5.68
1228 1640 2.586079 ATCGACCGCCGCATTCTG 60.586 61.111 0.00 0.00 38.37 3.02
1231 1643 4.166011 GACCGCCGCATTCTGCAC 62.166 66.667 0.00 0.00 45.36 4.57
1373 1785 7.648908 TCACAATTTGAATTTACTGCTTCACTG 59.351 33.333 2.79 0.00 31.41 3.66
1379 1791 8.621532 TTGAATTTACTGCTTCACTGAACTAT 57.378 30.769 0.00 0.00 31.41 2.12
1419 1835 7.823799 AGTTCATTTGTGTCCTTTGTTTTTGAT 59.176 29.630 0.00 0.00 0.00 2.57
1424 1840 9.623350 ATTTGTGTCCTTTGTTTTTGATTTTTG 57.377 25.926 0.00 0.00 0.00 2.44
1425 1841 7.969536 TGTGTCCTTTGTTTTTGATTTTTGA 57.030 28.000 0.00 0.00 0.00 2.69
1426 1842 8.558973 TGTGTCCTTTGTTTTTGATTTTTGAT 57.441 26.923 0.00 0.00 0.00 2.57
1427 1843 9.007901 TGTGTCCTTTGTTTTTGATTTTTGATT 57.992 25.926 0.00 0.00 0.00 2.57
1428 1844 9.838975 GTGTCCTTTGTTTTTGATTTTTGATTT 57.161 25.926 0.00 0.00 0.00 2.17
1479 1895 3.420893 TGATGGGGATCACTGAAAACAC 58.579 45.455 0.00 0.00 0.00 3.32
1480 1896 3.181435 TGATGGGGATCACTGAAAACACA 60.181 43.478 0.00 0.00 0.00 3.72
1481 1897 3.524095 TGGGGATCACTGAAAACACAT 57.476 42.857 0.00 0.00 0.00 3.21
1482 1898 3.843422 TGGGGATCACTGAAAACACATT 58.157 40.909 0.00 0.00 0.00 2.71
1483 1899 4.991776 TGGGGATCACTGAAAACACATTA 58.008 39.130 0.00 0.00 0.00 1.90
1484 1900 4.764823 TGGGGATCACTGAAAACACATTAC 59.235 41.667 0.00 0.00 0.00 1.89
1485 1901 5.010282 GGGGATCACTGAAAACACATTACT 58.990 41.667 0.00 0.00 0.00 2.24
1486 1902 5.476945 GGGGATCACTGAAAACACATTACTT 59.523 40.000 0.00 0.00 0.00 2.24
1487 1903 6.381801 GGGATCACTGAAAACACATTACTTG 58.618 40.000 0.00 0.00 0.00 3.16
1488 1904 6.206634 GGGATCACTGAAAACACATTACTTGA 59.793 38.462 0.00 0.00 0.00 3.02
1489 1905 7.255451 GGGATCACTGAAAACACATTACTTGAA 60.255 37.037 0.00 0.00 0.00 2.69
1490 1906 7.591426 GGATCACTGAAAACACATTACTTGAAC 59.409 37.037 0.00 0.00 0.00 3.18
1491 1907 6.791303 TCACTGAAAACACATTACTTGAACC 58.209 36.000 0.00 0.00 0.00 3.62
1492 1908 6.375736 TCACTGAAAACACATTACTTGAACCA 59.624 34.615 0.00 0.00 0.00 3.67
1493 1909 7.032580 CACTGAAAACACATTACTTGAACCAA 58.967 34.615 0.00 0.00 0.00 3.67
1494 1910 7.706179 CACTGAAAACACATTACTTGAACCAAT 59.294 33.333 0.00 0.00 0.00 3.16
1495 1911 8.257306 ACTGAAAACACATTACTTGAACCAATT 58.743 29.630 0.00 0.00 0.00 2.32
1496 1912 8.641499 TGAAAACACATTACTTGAACCAATTC 57.359 30.769 0.00 0.00 35.18 2.17
1497 1913 7.708752 TGAAAACACATTACTTGAACCAATTCC 59.291 33.333 0.00 0.00 33.49 3.01
1498 1914 5.722021 ACACATTACTTGAACCAATTCCC 57.278 39.130 0.00 0.00 33.49 3.97
1499 1915 4.217550 ACACATTACTTGAACCAATTCCCG 59.782 41.667 0.00 0.00 33.49 5.14
1500 1916 4.457603 CACATTACTTGAACCAATTCCCGA 59.542 41.667 0.00 0.00 33.49 5.14
1501 1917 5.125417 CACATTACTTGAACCAATTCCCGAT 59.875 40.000 0.00 0.00 33.49 4.18
1502 1918 6.317642 CACATTACTTGAACCAATTCCCGATA 59.682 38.462 0.00 0.00 33.49 2.92
1503 1919 6.542370 ACATTACTTGAACCAATTCCCGATAG 59.458 38.462 0.00 0.00 33.49 2.08
1504 1920 4.569719 ACTTGAACCAATTCCCGATAGT 57.430 40.909 0.00 0.00 33.49 2.12
1505 1921 4.918588 ACTTGAACCAATTCCCGATAGTT 58.081 39.130 0.00 0.00 33.49 2.24
1506 1922 6.057321 ACTTGAACCAATTCCCGATAGTTA 57.943 37.500 0.00 0.00 33.49 2.24
1507 1923 6.113411 ACTTGAACCAATTCCCGATAGTTAG 58.887 40.000 0.00 0.00 33.49 2.34
1545 1961 2.163211 GCTTTGCTTCAGAATCAGGACC 59.837 50.000 0.00 0.00 0.00 4.46
1548 1964 1.623311 TGCTTCAGAATCAGGACCGAA 59.377 47.619 0.00 0.00 0.00 4.30
1570 1986 5.505181 ACAATTCCTAATAGGATGCCGAT 57.495 39.130 10.21 0.00 45.34 4.18
1578 1994 2.245159 TAGGATGCCGATGCTTTCTG 57.755 50.000 0.00 0.00 38.71 3.02
1656 2072 8.164070 AGAACCCCTCCATTGTATTGTATTATC 58.836 37.037 0.00 0.00 0.00 1.75
1720 2140 6.358822 GCCTTACGTTTACTGAATGTTTGTTC 59.641 38.462 0.00 0.00 38.42 3.18
1721 2141 6.572254 CCTTACGTTTACTGAATGTTTGTTCG 59.428 38.462 0.00 0.00 38.42 3.95
1722 2142 5.473796 ACGTTTACTGAATGTTTGTTCGT 57.526 34.783 0.00 0.00 33.72 3.85
1723 2143 5.871539 ACGTTTACTGAATGTTTGTTCGTT 58.128 33.333 0.00 0.00 33.72 3.85
1724 2144 6.316319 ACGTTTACTGAATGTTTGTTCGTTT 58.684 32.000 0.00 0.00 33.72 3.60
1725 2145 6.802834 ACGTTTACTGAATGTTTGTTCGTTTT 59.197 30.769 0.00 0.00 33.72 2.43
1865 2289 8.508875 GGAACGGGTGTGTTTTAATATATATGG 58.491 37.037 0.00 0.00 30.75 2.74
1894 2318 3.041946 TCCCTCTTCCTCCTATTGCTTC 58.958 50.000 0.00 0.00 0.00 3.86
1937 2370 4.657814 TTATCATCTTCTTATGGGGGCC 57.342 45.455 0.00 0.00 0.00 5.80
1938 2371 2.212752 TCATCTTCTTATGGGGGCCT 57.787 50.000 0.84 0.00 0.00 5.19
1947 2380 0.485099 TATGGGGGCCTGTGTGTTTT 59.515 50.000 0.84 0.00 0.00 2.43
1971 2404 5.995282 TGCACATATTTTCCCGGAGTAATAG 59.005 40.000 0.73 1.23 0.00 1.73
2029 2462 0.407139 AGAGCTTGCCCAAGTGGAAT 59.593 50.000 9.53 0.00 40.45 3.01
2052 2485 6.908870 TCCGAGTCTTCAAAATATGTGATG 57.091 37.500 0.00 0.00 0.00 3.07
2120 2561 8.258708 AGTAGTAGAGTTACATTTGGTGGATTC 58.741 37.037 0.00 0.00 31.96 2.52
2121 2562 6.415573 AGTAGAGTTACATTTGGTGGATTCC 58.584 40.000 0.00 0.00 31.96 3.01
2148 2589 0.110056 GCAACACCAATGTCTCGCAG 60.110 55.000 0.00 0.00 38.45 5.18
2151 2592 0.534877 ACACCAATGTCTCGCAGCAA 60.535 50.000 0.00 0.00 31.55 3.91
2209 2660 3.402628 ACAGTTACACAACCAGCTAGG 57.597 47.619 0.00 0.00 45.67 3.02
2223 2674 2.630098 CAGCTAGGCTAGGCTATGTTCA 59.370 50.000 24.81 5.28 36.40 3.18
2224 2675 3.070159 CAGCTAGGCTAGGCTATGTTCAA 59.930 47.826 24.81 4.54 36.40 2.69
2225 2676 3.906846 AGCTAGGCTAGGCTATGTTCAAT 59.093 43.478 24.81 0.28 36.99 2.57
2226 2677 4.020662 AGCTAGGCTAGGCTATGTTCAATC 60.021 45.833 24.81 1.34 36.99 2.67
2227 2678 4.262635 GCTAGGCTAGGCTATGTTCAATCA 60.263 45.833 24.81 2.33 0.00 2.57
2315 2766 0.036022 ACTGGAGCAGCAGTTCCTTC 59.964 55.000 13.07 0.00 44.72 3.46
2347 2811 2.574006 ATTGTCCAGAGAGCAAGCAA 57.426 45.000 0.00 0.00 0.00 3.91
2348 2812 1.888215 TTGTCCAGAGAGCAAGCAAG 58.112 50.000 0.00 0.00 0.00 4.01
2349 2813 0.604780 TGTCCAGAGAGCAAGCAAGC 60.605 55.000 0.00 0.00 0.00 4.01
2350 2814 0.604780 GTCCAGAGAGCAAGCAAGCA 60.605 55.000 3.19 0.00 36.85 3.91
2393 2857 7.882791 ACTGATAACCATCATCTGTTTGTTACA 59.117 33.333 0.00 0.00 40.40 2.41
2394 2858 8.039603 TGATAACCATCATCTGTTTGTTACAC 57.960 34.615 0.00 0.00 36.22 2.90
2395 2859 7.663493 TGATAACCATCATCTGTTTGTTACACA 59.337 33.333 0.00 0.00 36.22 3.72
2396 2860 6.707440 AACCATCATCTGTTTGTTACACAA 57.293 33.333 0.00 0.00 36.11 3.33
2397 2861 6.072112 ACCATCATCTGTTTGTTACACAAC 57.928 37.500 0.00 0.00 37.90 3.32
2398 2862 5.827797 ACCATCATCTGTTTGTTACACAACT 59.172 36.000 10.13 0.00 37.90 3.16
2675 3858 0.919710 GAGGCAGGTTGGATTACCCT 59.080 55.000 0.00 0.00 39.08 4.34
2995 5342 7.675161 TTTACTGGTTATCAGATCAGATGGA 57.325 36.000 10.66 0.00 46.18 3.41
2996 5343 7.862274 TTACTGGTTATCAGATCAGATGGAT 57.138 36.000 10.66 0.90 46.18 3.41
2997 5344 8.956446 TTACTGGTTATCAGATCAGATGGATA 57.044 34.615 10.66 0.04 46.18 2.59
3045 5798 4.115516 TCTCTGCTAACATTTCGAGATGC 58.884 43.478 15.37 2.69 0.00 3.91
3137 6777 9.914834 AATCTGGTTAGTTTAGGTTTGCATATA 57.085 29.630 0.00 0.00 0.00 0.86
3158 6798 3.690475 TCATCTTTTGCTCTGCTCAGA 57.310 42.857 0.00 0.00 35.85 3.27
3159 6799 4.217836 TCATCTTTTGCTCTGCTCAGAT 57.782 40.909 0.00 0.00 36.76 2.90
3160 6800 5.349061 TCATCTTTTGCTCTGCTCAGATA 57.651 39.130 0.00 0.00 36.76 1.98
3161 6801 5.114780 TCATCTTTTGCTCTGCTCAGATAC 58.885 41.667 0.00 0.00 36.76 2.24
3193 6833 6.183360 ACAGAATGACAGACTGAAGAGAGTTT 60.183 38.462 10.08 0.00 39.69 2.66
3194 6834 6.705381 CAGAATGACAGACTGAAGAGAGTTTT 59.295 38.462 10.08 0.00 39.69 2.43
3195 6835 7.226325 CAGAATGACAGACTGAAGAGAGTTTTT 59.774 37.037 10.08 0.00 39.69 1.94
3359 7010 2.603560 GCCATTAGCGAGTGAGTACAAC 59.396 50.000 0.00 0.00 0.00 3.32
3360 7011 3.845178 CCATTAGCGAGTGAGTACAACA 58.155 45.455 0.00 0.00 0.00 3.33
3361 7012 4.242475 CCATTAGCGAGTGAGTACAACAA 58.758 43.478 0.00 0.00 0.00 2.83
3362 7013 4.870426 CCATTAGCGAGTGAGTACAACAAT 59.130 41.667 0.00 0.00 0.00 2.71
3363 7014 5.005779 CCATTAGCGAGTGAGTACAACAATC 59.994 44.000 9.39 9.39 0.00 2.67
3365 7016 3.839293 AGCGAGTGAGTACAACAATCTC 58.161 45.455 14.77 9.42 31.53 2.75
3366 7017 3.255888 AGCGAGTGAGTACAACAATCTCA 59.744 43.478 14.77 0.00 36.12 3.27
3367 7018 4.081972 AGCGAGTGAGTACAACAATCTCAT 60.082 41.667 14.77 2.92 39.77 2.90
3369 7020 5.120830 GCGAGTGAGTACAACAATCTCATTT 59.879 40.000 14.77 0.00 39.77 2.32
3370 7021 6.347725 GCGAGTGAGTACAACAATCTCATTTT 60.348 38.462 14.77 0.00 39.77 1.82
3371 7022 7.230222 CGAGTGAGTACAACAATCTCATTTTC 58.770 38.462 14.77 0.00 39.77 2.29
3373 7024 8.682936 AGTGAGTACAACAATCTCATTTTCTT 57.317 30.769 0.00 0.00 39.77 2.52
3374 7025 8.562892 AGTGAGTACAACAATCTCATTTTCTTG 58.437 33.333 0.00 0.00 39.77 3.02
3375 7026 8.345565 GTGAGTACAACAATCTCATTTTCTTGT 58.654 33.333 0.00 0.00 39.77 3.16
3376 7027 8.344831 TGAGTACAACAATCTCATTTTCTTGTG 58.655 33.333 0.00 0.00 34.00 3.33
3386 7652 3.004002 TCATTTTCTTGTGCTGCACTGAG 59.996 43.478 30.43 25.78 35.11 3.35
3397 7663 4.033358 GTGCTGCACTGAGTACATGAATAC 59.967 45.833 24.68 0.00 0.00 1.89
3398 7664 4.183865 GCTGCACTGAGTACATGAATACA 58.816 43.478 0.00 0.00 0.00 2.29
3517 7794 2.614983 TCGACTGGGTGTTAAAGCAAAC 59.385 45.455 0.00 0.00 0.00 2.93
3553 7859 7.197703 GTCTGTCTCAAATTTCCCGTTTTAAA 58.802 34.615 0.00 0.00 0.00 1.52
3554 7860 7.378728 GTCTGTCTCAAATTTCCCGTTTTAAAG 59.621 37.037 0.00 0.00 0.00 1.85
3555 7861 5.980715 TGTCTCAAATTTCCCGTTTTAAAGC 59.019 36.000 0.00 0.00 0.00 3.51
3556 7862 5.980715 GTCTCAAATTTCCCGTTTTAAAGCA 59.019 36.000 2.86 0.00 0.00 3.91
3557 7863 6.477360 GTCTCAAATTTCCCGTTTTAAAGCAA 59.523 34.615 2.86 0.00 0.00 3.91
3558 7864 7.010645 GTCTCAAATTTCCCGTTTTAAAGCAAA 59.989 33.333 2.86 0.00 0.00 3.68
3559 7865 7.223777 TCTCAAATTTCCCGTTTTAAAGCAAAG 59.776 33.333 2.86 0.00 0.00 2.77
3560 7866 7.042335 TCAAATTTCCCGTTTTAAAGCAAAGA 58.958 30.769 2.86 0.00 0.00 2.52
3561 7867 7.549488 TCAAATTTCCCGTTTTAAAGCAAAGAA 59.451 29.630 2.86 0.00 0.00 2.52
3587 7893 8.862325 TTGAAGCTATTTTGGAGTATTTCTGA 57.138 30.769 0.00 0.00 0.00 3.27
3588 7894 9.466497 TTGAAGCTATTTTGGAGTATTTCTGAT 57.534 29.630 0.00 0.00 0.00 2.90
3589 7895 9.113838 TGAAGCTATTTTGGAGTATTTCTGATC 57.886 33.333 0.00 0.00 0.00 2.92
3590 7896 8.457238 AAGCTATTTTGGAGTATTTCTGATCC 57.543 34.615 0.00 0.00 0.00 3.36
3623 7929 6.148480 ACTCTACTTGATGTGATGTTGCTTTC 59.852 38.462 0.00 0.00 0.00 2.62
3772 8191 0.471617 AGGATGTGGAGCATGCCTAC 59.528 55.000 15.66 14.20 45.61 3.18
3783 8202 0.108662 CATGCCTACGAGTGAGTGCA 60.109 55.000 0.00 0.00 0.00 4.57
3784 8203 0.108615 ATGCCTACGAGTGAGTGCAC 60.109 55.000 9.40 9.40 45.49 4.57
3794 8213 0.104855 GTGAGTGCACACAGTCCTCA 59.895 55.000 21.04 9.16 44.37 3.86
3795 8214 0.829990 TGAGTGCACACAGTCCTCAA 59.170 50.000 21.04 0.00 44.37 3.02
3797 8216 0.541392 AGTGCACACAGTCCTCAACA 59.459 50.000 21.04 0.00 0.00 3.33
3799 8218 1.742831 GTGCACACAGTCCTCAACAAA 59.257 47.619 13.17 0.00 0.00 2.83
3800 8219 2.358898 GTGCACACAGTCCTCAACAAAT 59.641 45.455 13.17 0.00 0.00 2.32
3801 8220 3.023119 TGCACACAGTCCTCAACAAATT 58.977 40.909 0.00 0.00 0.00 1.82
3802 8221 3.446873 TGCACACAGTCCTCAACAAATTT 59.553 39.130 0.00 0.00 0.00 1.82
3803 8222 3.798337 GCACACAGTCCTCAACAAATTTG 59.202 43.478 16.67 16.67 0.00 2.32
3804 8223 4.362279 CACACAGTCCTCAACAAATTTGG 58.638 43.478 21.74 5.67 0.00 3.28
3808 8227 3.030291 AGTCCTCAACAAATTTGGCACA 58.970 40.909 21.74 2.65 0.00 4.57
3809 8228 3.642848 AGTCCTCAACAAATTTGGCACAT 59.357 39.130 21.74 0.00 39.30 3.21
3810 8229 4.101430 AGTCCTCAACAAATTTGGCACATT 59.899 37.500 21.74 4.28 39.30 2.71
3811 8230 4.448732 GTCCTCAACAAATTTGGCACATTC 59.551 41.667 21.74 4.61 39.30 2.67
3812 8231 3.429543 CCTCAACAAATTTGGCACATTCG 59.570 43.478 21.74 0.00 39.30 3.34
3813 8232 4.297510 CTCAACAAATTTGGCACATTCGA 58.702 39.130 21.74 5.76 39.30 3.71
3814 8233 4.297510 TCAACAAATTTGGCACATTCGAG 58.702 39.130 21.74 0.00 39.30 4.04
3815 8234 4.037327 TCAACAAATTTGGCACATTCGAGA 59.963 37.500 21.74 0.00 39.30 4.04
3816 8235 4.164822 ACAAATTTGGCACATTCGAGAG 57.835 40.909 21.74 0.00 39.30 3.20
3817 8236 3.057315 ACAAATTTGGCACATTCGAGAGG 60.057 43.478 21.74 0.00 39.30 3.69
3818 8237 2.787473 ATTTGGCACATTCGAGAGGA 57.213 45.000 0.00 0.00 39.30 3.71
3819 8238 2.559698 TTTGGCACATTCGAGAGGAA 57.440 45.000 0.00 0.00 39.30 3.36
3820 8239 2.559698 TTGGCACATTCGAGAGGAAA 57.440 45.000 0.00 0.00 39.30 3.13
3821 8240 2.559698 TGGCACATTCGAGAGGAAAA 57.440 45.000 0.00 0.00 38.36 2.29
3849 8285 8.850156 ACATTATTAGTTTCAGTCAGTTTGCTT 58.150 29.630 0.00 0.00 0.00 3.91
3853 8289 8.621532 ATTAGTTTCAGTCAGTTTGCTTATGA 57.378 30.769 0.00 0.00 0.00 2.15
3854 8290 8.621532 TTAGTTTCAGTCAGTTTGCTTATGAT 57.378 30.769 0.00 0.00 0.00 2.45
3855 8291 9.719355 TTAGTTTCAGTCAGTTTGCTTATGATA 57.281 29.630 0.00 0.00 0.00 2.15
3856 8292 8.034058 AGTTTCAGTCAGTTTGCTTATGATAC 57.966 34.615 0.00 0.00 0.00 2.24
3858 8294 9.151471 GTTTCAGTCAGTTTGCTTATGATACTA 57.849 33.333 0.00 0.00 0.00 1.82
3859 8295 9.890629 TTTCAGTCAGTTTGCTTATGATACTAT 57.109 29.630 0.00 0.00 0.00 2.12
3860 8296 8.877808 TCAGTCAGTTTGCTTATGATACTATG 57.122 34.615 0.00 0.00 0.00 2.23
3861 8297 8.695456 TCAGTCAGTTTGCTTATGATACTATGA 58.305 33.333 0.00 0.00 0.00 2.15
3862 8298 8.976471 CAGTCAGTTTGCTTATGATACTATGAG 58.024 37.037 0.00 0.00 0.00 2.90
3974 8436 4.379243 ACGGCGCTGGACCAGAAG 62.379 66.667 26.25 18.02 32.44 2.85
4070 8561 4.338118 ACATGAGAAAGAAGAAAAACGGCA 59.662 37.500 0.00 0.00 0.00 5.69
4071 8562 4.974368 TGAGAAAGAAGAAAAACGGCAA 57.026 36.364 0.00 0.00 0.00 4.52
4072 8563 5.514274 TGAGAAAGAAGAAAAACGGCAAT 57.486 34.783 0.00 0.00 0.00 3.56
4073 8564 5.901552 TGAGAAAGAAGAAAAACGGCAATT 58.098 33.333 0.00 0.00 0.00 2.32
4074 8565 7.033530 TGAGAAAGAAGAAAAACGGCAATTA 57.966 32.000 0.00 0.00 0.00 1.40
4120 8611 2.657296 CGGTGTCGTGTCGCAACT 60.657 61.111 0.00 0.00 0.00 3.16
4167 8658 9.145865 CATTCTTTAGTGTAGAAGAAGAGGAAC 57.854 37.037 5.03 0.00 43.00 3.62
4234 8735 8.661752 AAAGGAAAGGAAAGAAATCTGATGAT 57.338 30.769 0.00 0.00 33.70 2.45
4235 8736 7.642082 AGGAAAGGAAAGAAATCTGATGATG 57.358 36.000 0.00 0.00 32.44 3.07
4237 8738 7.892241 AGGAAAGGAAAGAAATCTGATGATGAA 59.108 33.333 0.00 0.00 32.44 2.57
4238 8739 8.693625 GGAAAGGAAAGAAATCTGATGATGAAT 58.306 33.333 0.00 0.00 32.44 2.57
4239 8740 9.517609 GAAAGGAAAGAAATCTGATGATGAATG 57.482 33.333 0.00 0.00 32.44 2.67
4240 8741 7.040473 AGGAAAGAAATCTGATGATGAATGC 57.960 36.000 0.00 0.00 32.44 3.56
4241 8742 6.605995 AGGAAAGAAATCTGATGATGAATGCA 59.394 34.615 0.00 0.00 32.44 3.96
4268 8769 5.355071 CAGTAGCATGCAAAGTTTGGATCTA 59.645 40.000 21.98 17.76 39.89 1.98
4269 8770 6.039047 CAGTAGCATGCAAAGTTTGGATCTAT 59.961 38.462 21.98 10.54 39.89 1.98
4270 8771 5.511234 AGCATGCAAAGTTTGGATCTATC 57.489 39.130 21.98 9.13 39.89 2.08
4271 8772 5.198965 AGCATGCAAAGTTTGGATCTATCT 58.801 37.500 21.98 10.93 39.89 1.98
4362 9586 3.133003 ACCCAACCAATGTCGAGATAGAG 59.867 47.826 0.00 0.00 0.00 2.43
4438 9662 1.064825 AATCAGAAACCACCCGGAGT 58.935 50.000 0.73 0.00 35.59 3.85
4470 9694 4.415332 CCACTGTCCCCGACGACG 62.415 72.222 0.00 0.00 34.95 5.12
4472 9696 2.595463 ACTGTCCCCGACGACGAA 60.595 61.111 9.28 0.00 42.66 3.85
4511 9735 2.877168 CAATATGCTGACTCTCCAAGGC 59.123 50.000 0.00 0.00 0.00 4.35
4532 9756 2.159653 CGATGCCTCAAAGAAGGAAACG 60.160 50.000 0.00 0.00 38.87 3.60
4534 9758 3.140325 TGCCTCAAAGAAGGAAACGAT 57.860 42.857 0.00 0.00 38.87 3.73
4550 9774 1.664965 GATGTAGCCGCCGTCATCC 60.665 63.158 8.11 0.00 33.01 3.51
4567 9791 4.891727 CCCCGCTTCGACCATCCG 62.892 72.222 0.00 0.00 0.00 4.18
4617 9841 3.555324 TGGAGCTCCACGGCAACA 61.555 61.111 32.00 6.16 42.01 3.33
4628 9852 1.002468 CACGGCAACACCTTCAAGAAG 60.002 52.381 2.83 2.83 38.14 2.85
4674 9898 3.047877 CGGCACCGACCCAAAGTC 61.048 66.667 2.01 0.00 42.83 3.01
4707 9931 2.348998 CCCAGAGCTCCACCACAC 59.651 66.667 10.93 0.00 0.00 3.82
4710 9934 1.294780 CAGAGCTCCACCACACCTC 59.705 63.158 10.93 0.00 0.00 3.85
4711 9935 1.157276 AGAGCTCCACCACACCTCT 59.843 57.895 10.93 0.00 0.00 3.69
4738 9962 2.289820 CGAGCAATTCATGATCCACTGG 59.710 50.000 0.00 0.00 41.48 4.00
4746 9970 1.552799 ATGATCCACTGGTCGGTGCA 61.553 55.000 4.49 0.00 36.03 4.57
4785 10009 0.249699 ACGAAGTTGCGACACATGGA 60.250 50.000 6.90 0.00 37.78 3.41
4788 10012 2.143122 GAAGTTGCGACACATGGAAGA 58.857 47.619 6.90 0.00 0.00 2.87
4834 10058 3.308530 GCGGCAACTCCAATTTATATGC 58.691 45.455 0.00 0.00 34.01 3.14
4861 10085 4.282827 TGACCACGTCTAGCAATAATGCG 61.283 47.826 0.00 0.00 44.36 4.73
4879 10103 1.006832 CGGAAAGGACCAATGTAGCG 58.993 55.000 0.00 0.00 0.00 4.26
4880 10104 1.674817 CGGAAAGGACCAATGTAGCGT 60.675 52.381 0.00 0.00 0.00 5.07
4881 10105 1.737793 GGAAAGGACCAATGTAGCGTG 59.262 52.381 0.00 0.00 0.00 5.34
4882 10106 1.737793 GAAAGGACCAATGTAGCGTGG 59.262 52.381 0.00 0.00 41.00 4.94
4883 10107 0.981183 AAGGACCAATGTAGCGTGGA 59.019 50.000 0.00 0.00 38.36 4.02
4884 10108 0.537188 AGGACCAATGTAGCGTGGAG 59.463 55.000 0.00 0.00 38.36 3.86
4909 10133 1.305219 TTGCCCTTGATTCCGAAGCG 61.305 55.000 0.00 0.00 0.00 4.68
4954 10178 4.520179 ACATGCAGATAAGCTTGATCACA 58.480 39.130 9.86 10.52 40.84 3.58
4962 10212 1.215244 AGCTTGATCACATGCGATCG 58.785 50.000 16.77 11.69 46.91 3.69
4995 10245 2.815647 CGGTCTTGAGCCGCCTTC 60.816 66.667 0.00 0.00 42.82 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.463444 CTCCGGCGAAAGTAAAAGTGG 59.537 52.381 9.30 0.00 0.00 4.00
1 2 1.136057 GCTCCGGCGAAAGTAAAAGTG 60.136 52.381 9.30 0.00 0.00 3.16
2 3 1.154197 GCTCCGGCGAAAGTAAAAGT 58.846 50.000 9.30 0.00 0.00 2.66
3 4 0.446616 GGCTCCGGCGAAAGTAAAAG 59.553 55.000 9.30 0.00 39.81 2.27
4 5 0.956902 GGGCTCCGGCGAAAGTAAAA 60.957 55.000 9.30 0.00 39.81 1.52
5 6 1.376295 GGGCTCCGGCGAAAGTAAA 60.376 57.895 9.30 0.00 39.81 2.01
6 7 2.266689 GGGCTCCGGCGAAAGTAA 59.733 61.111 9.30 0.00 39.81 2.24
7 8 3.777910 GGGGCTCCGGCGAAAGTA 61.778 66.667 9.30 0.00 39.81 2.24
31 32 3.430374 CGAACTCAATACACTACAGGGGG 60.430 52.174 0.00 0.00 0.00 5.40
32 33 3.430374 CCGAACTCAATACACTACAGGGG 60.430 52.174 0.00 0.00 0.00 4.79
33 34 3.782046 CCGAACTCAATACACTACAGGG 58.218 50.000 0.00 0.00 0.00 4.45
34 35 3.187700 GCCGAACTCAATACACTACAGG 58.812 50.000 0.00 0.00 0.00 4.00
35 36 3.119101 AGGCCGAACTCAATACACTACAG 60.119 47.826 0.00 0.00 0.00 2.74
36 37 2.829720 AGGCCGAACTCAATACACTACA 59.170 45.455 0.00 0.00 0.00 2.74
37 38 3.187700 CAGGCCGAACTCAATACACTAC 58.812 50.000 0.00 0.00 0.00 2.73
38 39 2.167693 CCAGGCCGAACTCAATACACTA 59.832 50.000 0.00 0.00 0.00 2.74
39 40 1.066143 CCAGGCCGAACTCAATACACT 60.066 52.381 0.00 0.00 0.00 3.55
40 41 1.369625 CCAGGCCGAACTCAATACAC 58.630 55.000 0.00 0.00 0.00 2.90
41 42 0.251916 CCCAGGCCGAACTCAATACA 59.748 55.000 0.00 0.00 0.00 2.29
42 43 0.539986 TCCCAGGCCGAACTCAATAC 59.460 55.000 0.00 0.00 0.00 1.89
43 44 1.416401 GATCCCAGGCCGAACTCAATA 59.584 52.381 0.00 0.00 0.00 1.90
44 45 0.181350 GATCCCAGGCCGAACTCAAT 59.819 55.000 0.00 0.00 0.00 2.57
45 46 1.198094 TGATCCCAGGCCGAACTCAA 61.198 55.000 0.00 0.00 0.00 3.02
46 47 1.612146 TGATCCCAGGCCGAACTCA 60.612 57.895 0.00 0.00 0.00 3.41
47 48 1.153349 GTGATCCCAGGCCGAACTC 60.153 63.158 0.00 0.00 0.00 3.01
48 49 2.670148 GGTGATCCCAGGCCGAACT 61.670 63.158 0.00 0.00 0.00 3.01
49 50 2.124695 GGTGATCCCAGGCCGAAC 60.125 66.667 0.00 0.00 0.00 3.95
50 51 3.781307 CGGTGATCCCAGGCCGAA 61.781 66.667 0.00 0.00 46.33 4.30
56 57 2.779742 TTTTGGCCCGGTGATCCCAG 62.780 60.000 0.00 0.00 0.00 4.45
57 58 2.373338 TTTTTGGCCCGGTGATCCCA 62.373 55.000 0.00 0.00 0.00 4.37
58 59 0.975556 ATTTTTGGCCCGGTGATCCC 60.976 55.000 0.00 0.00 0.00 3.85
59 60 0.175531 CATTTTTGGCCCGGTGATCC 59.824 55.000 0.00 0.00 0.00 3.36
60 61 0.175531 CCATTTTTGGCCCGGTGATC 59.824 55.000 0.00 0.00 0.00 2.92
61 62 0.544120 ACCATTTTTGGCCCGGTGAT 60.544 50.000 0.00 0.00 0.00 3.06
62 63 1.152440 ACCATTTTTGGCCCGGTGA 60.152 52.632 0.00 0.00 0.00 4.02
63 64 1.291906 GACCATTTTTGGCCCGGTG 59.708 57.895 0.00 0.00 0.00 4.94
64 65 1.911269 GGACCATTTTTGGCCCGGT 60.911 57.895 0.00 0.00 0.00 5.28
65 66 2.978000 GGACCATTTTTGGCCCGG 59.022 61.111 0.00 0.00 0.00 5.73
67 68 0.682292 TTTCGGACCATTTTTGGCCC 59.318 50.000 0.00 0.00 0.00 5.80
68 69 1.790755 GTTTCGGACCATTTTTGGCC 58.209 50.000 0.00 0.00 0.00 5.36
69 70 1.414378 CGTTTCGGACCATTTTTGGC 58.586 50.000 0.00 0.00 0.00 4.52
82 83 2.398036 CCGAATTCCGCCGTTTCG 59.602 61.111 0.00 6.98 41.31 3.46
83 84 2.099638 GCCGAATTCCGCCGTTTC 59.900 61.111 7.46 0.00 36.84 2.78
84 85 3.795342 CGCCGAATTCCGCCGTTT 61.795 61.111 12.30 0.00 34.19 3.60
88 89 4.832608 AGGACGCCGAATTCCGCC 62.833 66.667 12.30 10.09 36.95 6.13
89 90 3.564027 CAGGACGCCGAATTCCGC 61.564 66.667 8.53 8.53 36.95 5.54
90 91 1.878522 CTCAGGACGCCGAATTCCG 60.879 63.158 0.00 1.04 36.95 4.30
91 92 1.521681 CCTCAGGACGCCGAATTCC 60.522 63.158 0.00 0.00 0.00 3.01
92 93 1.521681 CCCTCAGGACGCCGAATTC 60.522 63.158 0.00 0.00 33.47 2.17
93 94 2.584608 CCCTCAGGACGCCGAATT 59.415 61.111 0.00 0.00 33.47 2.17
94 95 4.162690 GCCCTCAGGACGCCGAAT 62.163 66.667 0.00 0.00 33.47 3.34
101 102 4.803426 CAGTCGCGCCCTCAGGAC 62.803 72.222 0.00 1.68 33.47 3.85
104 105 3.883744 AAACCAGTCGCGCCCTCAG 62.884 63.158 0.00 0.00 0.00 3.35
105 106 2.951475 AAAAACCAGTCGCGCCCTCA 62.951 55.000 0.00 0.00 0.00 3.86
106 107 2.258726 AAAAACCAGTCGCGCCCTC 61.259 57.895 0.00 0.00 0.00 4.30
107 108 2.203294 AAAAACCAGTCGCGCCCT 60.203 55.556 0.00 0.00 0.00 5.19
127 128 0.460284 TTTTTCTGCCGGCGCAAAAA 60.460 45.000 30.12 30.12 46.66 1.94
128 129 1.141881 TTTTTCTGCCGGCGCAAAA 59.858 47.368 24.26 24.26 46.66 2.44
129 130 2.808315 TTTTTCTGCCGGCGCAAA 59.192 50.000 23.90 19.65 46.66 3.68
143 144 2.197605 CCCCCAAGACGCCGTTTTT 61.198 57.895 0.00 0.00 0.00 1.94
144 145 2.596338 CCCCCAAGACGCCGTTTT 60.596 61.111 0.00 0.00 0.00 2.43
169 170 4.864334 CATCTCCAGCCGCACCCC 62.864 72.222 0.00 0.00 0.00 4.95
171 172 4.479993 AGCATCTCCAGCCGCACC 62.480 66.667 0.00 0.00 0.00 5.01
172 173 2.894387 GAGCATCTCCAGCCGCAC 60.894 66.667 0.00 0.00 0.00 5.34
185 186 1.270839 GGTGGTGCTTGTCTTAGAGCA 60.271 52.381 0.00 0.00 45.91 4.26
186 187 1.443802 GGTGGTGCTTGTCTTAGAGC 58.556 55.000 0.00 0.00 39.33 4.09
187 188 1.625818 AGGGTGGTGCTTGTCTTAGAG 59.374 52.381 0.00 0.00 0.00 2.43
188 189 1.347707 CAGGGTGGTGCTTGTCTTAGA 59.652 52.381 0.00 0.00 0.00 2.10
189 190 1.347707 TCAGGGTGGTGCTTGTCTTAG 59.652 52.381 0.00 0.00 0.00 2.18
190 191 1.429930 TCAGGGTGGTGCTTGTCTTA 58.570 50.000 0.00 0.00 0.00 2.10
191 192 0.550914 TTCAGGGTGGTGCTTGTCTT 59.449 50.000 0.00 0.00 0.00 3.01
192 193 0.773644 ATTCAGGGTGGTGCTTGTCT 59.226 50.000 0.00 0.00 0.00 3.41
193 194 1.620822 AATTCAGGGTGGTGCTTGTC 58.379 50.000 0.00 0.00 0.00 3.18
194 195 1.963515 GAAATTCAGGGTGGTGCTTGT 59.036 47.619 0.00 0.00 0.00 3.16
195 196 1.962807 TGAAATTCAGGGTGGTGCTTG 59.037 47.619 0.00 0.00 0.00 4.01
196 197 2.242043 CTGAAATTCAGGGTGGTGCTT 58.758 47.619 14.85 0.00 40.71 3.91
197 198 1.915141 CTGAAATTCAGGGTGGTGCT 58.085 50.000 14.85 0.00 40.71 4.40
247 248 9.701355 CCAAACAGAACAAACAAAATCAAATAC 57.299 29.630 0.00 0.00 0.00 1.89
248 249 8.887717 CCCAAACAGAACAAACAAAATCAAATA 58.112 29.630 0.00 0.00 0.00 1.40
249 250 7.609532 TCCCAAACAGAACAAACAAAATCAAAT 59.390 29.630 0.00 0.00 0.00 2.32
250 251 6.936900 TCCCAAACAGAACAAACAAAATCAAA 59.063 30.769 0.00 0.00 0.00 2.69
251 252 6.467677 TCCCAAACAGAACAAACAAAATCAA 58.532 32.000 0.00 0.00 0.00 2.57
252 253 6.042638 TCCCAAACAGAACAAACAAAATCA 57.957 33.333 0.00 0.00 0.00 2.57
253 254 6.976636 TTCCCAAACAGAACAAACAAAATC 57.023 33.333 0.00 0.00 0.00 2.17
254 255 7.936496 AATTCCCAAACAGAACAAACAAAAT 57.064 28.000 0.00 0.00 0.00 1.82
255 256 7.751768 AAATTCCCAAACAGAACAAACAAAA 57.248 28.000 0.00 0.00 0.00 2.44
256 257 7.751768 AAAATTCCCAAACAGAACAAACAAA 57.248 28.000 0.00 0.00 0.00 2.83
257 258 7.751768 AAAAATTCCCAAACAGAACAAACAA 57.248 28.000 0.00 0.00 0.00 2.83
278 279 7.942990 ACTAAAATCACCGTCACCAATAAAAA 58.057 30.769 0.00 0.00 0.00 1.94
279 280 7.513371 ACTAAAATCACCGTCACCAATAAAA 57.487 32.000 0.00 0.00 0.00 1.52
280 281 7.879160 ACTACTAAAATCACCGTCACCAATAAA 59.121 33.333 0.00 0.00 0.00 1.40
281 282 7.388437 ACTACTAAAATCACCGTCACCAATAA 58.612 34.615 0.00 0.00 0.00 1.40
282 283 6.938507 ACTACTAAAATCACCGTCACCAATA 58.061 36.000 0.00 0.00 0.00 1.90
283 284 5.801380 ACTACTAAAATCACCGTCACCAAT 58.199 37.500 0.00 0.00 0.00 3.16
284 285 5.217978 ACTACTAAAATCACCGTCACCAA 57.782 39.130 0.00 0.00 0.00 3.67
285 286 4.877378 ACTACTAAAATCACCGTCACCA 57.123 40.909 0.00 0.00 0.00 4.17
286 287 5.697633 TGAAACTACTAAAATCACCGTCACC 59.302 40.000 0.00 0.00 0.00 4.02
287 288 6.774354 TGAAACTACTAAAATCACCGTCAC 57.226 37.500 0.00 0.00 0.00 3.67
288 289 7.972832 AATGAAACTACTAAAATCACCGTCA 57.027 32.000 0.00 0.00 0.00 4.35
289 290 9.673454 AAAAATGAAACTACTAAAATCACCGTC 57.327 29.630 0.00 0.00 0.00 4.79
324 325 9.374711 TCCAAATCCAAAATACTACTCCTTTTT 57.625 29.630 0.00 0.00 0.00 1.94
325 326 8.950007 TCCAAATCCAAAATACTACTCCTTTT 57.050 30.769 0.00 0.00 0.00 2.27
326 327 9.547279 AATCCAAATCCAAAATACTACTCCTTT 57.453 29.630 0.00 0.00 0.00 3.11
327 328 9.547279 AAATCCAAATCCAAAATACTACTCCTT 57.453 29.630 0.00 0.00 0.00 3.36
328 329 9.190317 GAAATCCAAATCCAAAATACTACTCCT 57.810 33.333 0.00 0.00 0.00 3.69
329 330 8.129211 CGAAATCCAAATCCAAAATACTACTCC 58.871 37.037 0.00 0.00 0.00 3.85
330 331 8.674607 ACGAAATCCAAATCCAAAATACTACTC 58.325 33.333 0.00 0.00 0.00 2.59
331 332 8.575649 ACGAAATCCAAATCCAAAATACTACT 57.424 30.769 0.00 0.00 0.00 2.57
332 333 8.674607 AGACGAAATCCAAATCCAAAATACTAC 58.325 33.333 0.00 0.00 0.00 2.73
333 334 8.801882 AGACGAAATCCAAATCCAAAATACTA 57.198 30.769 0.00 0.00 0.00 1.82
334 335 7.703058 AGACGAAATCCAAATCCAAAATACT 57.297 32.000 0.00 0.00 0.00 2.12
335 336 7.201435 GCAAGACGAAATCCAAATCCAAAATAC 60.201 37.037 0.00 0.00 0.00 1.89
336 337 6.811170 GCAAGACGAAATCCAAATCCAAAATA 59.189 34.615 0.00 0.00 0.00 1.40
337 338 5.639082 GCAAGACGAAATCCAAATCCAAAAT 59.361 36.000 0.00 0.00 0.00 1.82
338 339 4.987912 GCAAGACGAAATCCAAATCCAAAA 59.012 37.500 0.00 0.00 0.00 2.44
339 340 4.555262 GCAAGACGAAATCCAAATCCAAA 58.445 39.130 0.00 0.00 0.00 3.28
340 341 3.056891 GGCAAGACGAAATCCAAATCCAA 60.057 43.478 0.00 0.00 0.00 3.53
341 342 2.491693 GGCAAGACGAAATCCAAATCCA 59.508 45.455 0.00 0.00 0.00 3.41
342 343 2.755103 AGGCAAGACGAAATCCAAATCC 59.245 45.455 0.00 0.00 0.00 3.01
343 344 4.201920 GGTAGGCAAGACGAAATCCAAATC 60.202 45.833 0.00 0.00 0.00 2.17
348 349 2.396590 TGGTAGGCAAGACGAAATCC 57.603 50.000 0.00 0.00 0.00 3.01
354 355 1.600023 TTGGTTTGGTAGGCAAGACG 58.400 50.000 0.00 0.00 0.00 4.18
379 380 1.369091 GGGAATGAATGCGTGCGTCT 61.369 55.000 0.00 0.00 0.00 4.18
396 399 2.093235 GTGGAGTGAGAGATCCAAAGGG 60.093 54.545 0.00 0.00 46.87 3.95
398 401 4.550076 AAGTGGAGTGAGAGATCCAAAG 57.450 45.455 0.00 0.00 46.87 2.77
399 402 4.505566 CCAAAGTGGAGTGAGAGATCCAAA 60.506 45.833 0.00 0.00 46.87 3.28
401 404 2.568956 CCAAAGTGGAGTGAGAGATCCA 59.431 50.000 0.00 0.00 40.96 3.41
402 405 2.569404 ACCAAAGTGGAGTGAGAGATCC 59.431 50.000 0.18 0.00 40.96 3.36
403 406 3.971245 ACCAAAGTGGAGTGAGAGATC 57.029 47.619 0.18 0.00 40.96 2.75
404 407 3.008485 GGAACCAAAGTGGAGTGAGAGAT 59.992 47.826 0.18 0.00 40.96 2.75
405 408 2.368875 GGAACCAAAGTGGAGTGAGAGA 59.631 50.000 0.18 0.00 40.96 3.10
407 410 2.368875 GAGGAACCAAAGTGGAGTGAGA 59.631 50.000 0.18 0.00 40.96 3.27
411 414 2.104963 GAGTGAGGAACCAAAGTGGAGT 59.895 50.000 0.18 0.00 40.96 3.85
412 415 2.370189 AGAGTGAGGAACCAAAGTGGAG 59.630 50.000 0.18 0.00 40.96 3.86
413 416 2.368875 GAGAGTGAGGAACCAAAGTGGA 59.631 50.000 0.18 0.00 40.96 4.02
435 438 1.045407 TTTGGTAGGTCAGTCAGCGT 58.955 50.000 0.00 0.00 0.00 5.07
436 439 1.429463 GTTTGGTAGGTCAGTCAGCG 58.571 55.000 0.00 0.00 0.00 5.18
437 440 1.071699 TGGTTTGGTAGGTCAGTCAGC 59.928 52.381 0.00 0.00 0.00 4.26
438 441 3.485463 TTGGTTTGGTAGGTCAGTCAG 57.515 47.619 0.00 0.00 0.00 3.51
439 442 3.650942 AGATTGGTTTGGTAGGTCAGTCA 59.349 43.478 0.00 0.00 0.00 3.41
440 443 4.020128 AGAGATTGGTTTGGTAGGTCAGTC 60.020 45.833 0.00 0.00 0.00 3.51
474 477 2.360726 GGCGGGTGGTTTGTAGGG 60.361 66.667 0.00 0.00 0.00 3.53
475 478 2.744709 CGGCGGGTGGTTTGTAGG 60.745 66.667 0.00 0.00 0.00 3.18
476 479 3.428282 GCGGCGGGTGGTTTGTAG 61.428 66.667 9.78 0.00 0.00 2.74
552 555 4.900652 CCCAATCCAATCCAATCCAATACA 59.099 41.667 0.00 0.00 0.00 2.29
553 556 4.901250 ACCCAATCCAATCCAATCCAATAC 59.099 41.667 0.00 0.00 0.00 1.89
554 557 5.155035 ACCCAATCCAATCCAATCCAATA 57.845 39.130 0.00 0.00 0.00 1.90
555 558 4.011591 ACCCAATCCAATCCAATCCAAT 57.988 40.909 0.00 0.00 0.00 3.16
714 744 1.676006 GCTACAACCAACAAGCTGTGT 59.324 47.619 0.00 0.00 44.64 3.72
715 745 1.949525 AGCTACAACCAACAAGCTGTG 59.050 47.619 0.00 0.00 43.46 3.66
716 746 2.348411 AGCTACAACCAACAAGCTGT 57.652 45.000 0.00 0.00 43.46 4.40
717 747 2.160417 GCTAGCTACAACCAACAAGCTG 59.840 50.000 7.70 0.00 44.70 4.24
718 748 2.039084 AGCTAGCTACAACCAACAAGCT 59.961 45.455 17.69 0.95 46.58 3.74
719 749 2.427506 AGCTAGCTACAACCAACAAGC 58.572 47.619 17.69 0.00 35.16 4.01
797 892 9.388506 GGTACAGTACATTTACAGTAGAGTAGA 57.611 37.037 12.89 0.00 32.51 2.59
798 893 9.170734 TGGTACAGTACATTTACAGTAGAGTAG 57.829 37.037 12.89 0.00 32.51 2.57
800 895 8.413309 TTGGTACAGTACATTTACAGTAGAGT 57.587 34.615 12.89 0.00 42.39 3.24
801 896 7.974501 CCTTGGTACAGTACATTTACAGTAGAG 59.025 40.741 12.89 0.00 42.39 2.43
802 897 7.670979 TCCTTGGTACAGTACATTTACAGTAGA 59.329 37.037 12.89 0.00 42.39 2.59
803 898 7.833786 TCCTTGGTACAGTACATTTACAGTAG 58.166 38.462 12.89 0.00 42.39 2.57
805 900 6.675413 TCCTTGGTACAGTACATTTACAGT 57.325 37.500 12.89 0.00 42.39 3.55
836 940 4.285863 TCCTTTGCTTTCCTTTCCTTTCA 58.714 39.130 0.00 0.00 0.00 2.69
877 981 9.994017 AGAGACCTCTAAATAAAACTACCTAGT 57.006 33.333 0.00 0.00 38.35 2.57
881 985 8.075761 TCCAGAGACCTCTAAATAAAACTACC 57.924 38.462 0.00 0.00 37.98 3.18
965 1342 2.086054 AGAAGACAAGATGTGCGGTC 57.914 50.000 0.00 0.00 0.00 4.79
1002 1382 4.152625 GCACACGCGAGCATGGAC 62.153 66.667 15.93 0.00 0.00 4.02
1100 1512 3.118531 AGTGGTATGGAAAGGATGAGCT 58.881 45.455 0.00 0.00 0.00 4.09
1101 1513 3.567478 AGTGGTATGGAAAGGATGAGC 57.433 47.619 0.00 0.00 0.00 4.26
1103 1515 7.069578 GTCTAGTAAGTGGTATGGAAAGGATGA 59.930 40.741 0.00 0.00 0.00 2.92
1104 1516 7.210873 GTCTAGTAAGTGGTATGGAAAGGATG 58.789 42.308 0.00 0.00 0.00 3.51
1105 1517 6.326843 GGTCTAGTAAGTGGTATGGAAAGGAT 59.673 42.308 0.00 0.00 0.00 3.24
1165 1577 0.029300 GGTGTGTGTGTGTGTGCATC 59.971 55.000 0.00 0.00 0.00 3.91
1169 1581 0.459411 TCGAGGTGTGTGTGTGTGTG 60.459 55.000 0.00 0.00 0.00 3.82
1170 1582 0.464036 ATCGAGGTGTGTGTGTGTGT 59.536 50.000 0.00 0.00 0.00 3.72
1172 1584 0.033504 GGATCGAGGTGTGTGTGTGT 59.966 55.000 0.00 0.00 0.00 3.72
1173 1585 0.033366 TGGATCGAGGTGTGTGTGTG 59.967 55.000 0.00 0.00 0.00 3.82
1175 1587 0.670546 GGTGGATCGAGGTGTGTGTG 60.671 60.000 0.00 0.00 0.00 3.82
1176 1588 0.832135 AGGTGGATCGAGGTGTGTGT 60.832 55.000 0.00 0.00 0.00 3.72
1180 1592 2.233922 CTGTAAAGGTGGATCGAGGTGT 59.766 50.000 0.00 0.00 0.00 4.16
1181 1593 2.233922 ACTGTAAAGGTGGATCGAGGTG 59.766 50.000 0.00 0.00 0.00 4.00
1182 1594 2.496470 GACTGTAAAGGTGGATCGAGGT 59.504 50.000 0.00 0.00 0.00 3.85
1183 1595 2.761208 AGACTGTAAAGGTGGATCGAGG 59.239 50.000 0.00 0.00 0.00 4.63
1184 1596 3.775202 CAGACTGTAAAGGTGGATCGAG 58.225 50.000 0.00 0.00 0.00 4.04
1185 1597 2.094182 GCAGACTGTAAAGGTGGATCGA 60.094 50.000 3.99 0.00 0.00 3.59
1186 1598 2.271800 GCAGACTGTAAAGGTGGATCG 58.728 52.381 3.99 0.00 0.00 3.69
1187 1599 3.055819 TCTGCAGACTGTAAAGGTGGATC 60.056 47.826 13.74 0.00 0.00 3.36
1188 1600 2.906389 TCTGCAGACTGTAAAGGTGGAT 59.094 45.455 13.74 0.00 0.00 3.41
1189 1601 2.037251 GTCTGCAGACTGTAAAGGTGGA 59.963 50.000 34.54 0.00 41.65 4.02
1190 1602 2.224281 TGTCTGCAGACTGTAAAGGTGG 60.224 50.000 38.81 0.79 44.99 4.61
1191 1603 3.111853 TGTCTGCAGACTGTAAAGGTG 57.888 47.619 38.81 1.26 44.99 4.00
1192 1604 3.615110 CGATGTCTGCAGACTGTAAAGGT 60.615 47.826 38.81 18.88 44.99 3.50
1193 1605 2.926200 CGATGTCTGCAGACTGTAAAGG 59.074 50.000 38.81 20.95 44.99 3.11
1194 1606 3.610242 GTCGATGTCTGCAGACTGTAAAG 59.390 47.826 38.81 25.40 44.99 1.85
1195 1607 3.575630 GTCGATGTCTGCAGACTGTAAA 58.424 45.455 38.81 23.92 44.99 2.01
1196 1608 2.094700 GGTCGATGTCTGCAGACTGTAA 60.095 50.000 38.81 24.27 44.99 2.41
1222 1634 1.135859 GCCTTTGTCTCGTGCAGAATG 60.136 52.381 0.00 0.00 40.87 2.67
1228 1640 2.357034 TCCGCCTTTGTCTCGTGC 60.357 61.111 0.00 0.00 0.00 5.34
1231 1643 1.738099 CTGGTCCGCCTTTGTCTCG 60.738 63.158 0.00 0.00 35.27 4.04
1280 1692 7.399245 AAAGTTAAAGTGAGTTGGCAGTTTA 57.601 32.000 0.00 0.00 40.71 2.01
1281 1693 5.914898 AAGTTAAAGTGAGTTGGCAGTTT 57.085 34.783 0.00 0.00 42.38 2.66
1379 1791 9.349713 ACACAAATGAACTTGGTTAGAAAGATA 57.650 29.630 0.00 0.00 0.00 1.98
1394 1806 7.357951 TCAAAAACAAAGGACACAAATGAAC 57.642 32.000 0.00 0.00 0.00 3.18
1436 1852 8.714179 CATCATTAATGAGAAAGCTTGCAAAAA 58.286 29.630 21.97 2.86 40.64 1.94
1437 1853 7.332430 CCATCATTAATGAGAAAGCTTGCAAAA 59.668 33.333 21.97 3.17 40.64 2.44
1438 1854 6.814644 CCATCATTAATGAGAAAGCTTGCAAA 59.185 34.615 21.97 0.00 40.64 3.68
1453 1869 6.896860 TGTTTTCAGTGATCCCCATCATTAAT 59.103 34.615 0.00 0.00 41.26 1.40
1479 1895 5.835113 ATCGGGAATTGGTTCAAGTAATG 57.165 39.130 0.00 0.00 36.01 1.90
1480 1896 6.659824 ACTATCGGGAATTGGTTCAAGTAAT 58.340 36.000 0.00 0.00 36.01 1.89
1481 1897 6.057321 ACTATCGGGAATTGGTTCAAGTAA 57.943 37.500 0.00 0.00 36.01 2.24
1482 1898 5.687166 ACTATCGGGAATTGGTTCAAGTA 57.313 39.130 0.00 0.00 36.01 2.24
1483 1899 4.569719 ACTATCGGGAATTGGTTCAAGT 57.430 40.909 0.00 0.00 36.01 3.16
1484 1900 5.007724 GCTAACTATCGGGAATTGGTTCAAG 59.992 44.000 0.00 0.00 36.01 3.02
1485 1901 4.879545 GCTAACTATCGGGAATTGGTTCAA 59.120 41.667 0.00 0.00 36.01 2.69
1486 1902 4.163458 AGCTAACTATCGGGAATTGGTTCA 59.837 41.667 0.00 0.00 36.01 3.18
1487 1903 4.704965 AGCTAACTATCGGGAATTGGTTC 58.295 43.478 0.00 0.00 0.00 3.62
1488 1904 4.409247 AGAGCTAACTATCGGGAATTGGTT 59.591 41.667 0.00 0.00 0.00 3.67
1489 1905 3.967987 AGAGCTAACTATCGGGAATTGGT 59.032 43.478 0.00 0.00 0.00 3.67
1490 1906 4.282195 AGAGAGCTAACTATCGGGAATTGG 59.718 45.833 0.00 0.00 39.21 3.16
1491 1907 5.461032 AGAGAGCTAACTATCGGGAATTG 57.539 43.478 0.00 0.00 39.21 2.32
1492 1908 5.836358 AGAAGAGAGCTAACTATCGGGAATT 59.164 40.000 0.00 0.00 39.21 2.17
1493 1909 5.390387 AGAAGAGAGCTAACTATCGGGAAT 58.610 41.667 0.00 0.00 39.21 3.01
1494 1910 4.794334 AGAAGAGAGCTAACTATCGGGAA 58.206 43.478 0.00 0.00 39.21 3.97
1495 1911 4.440826 AGAAGAGAGCTAACTATCGGGA 57.559 45.455 0.00 0.00 39.21 5.14
1496 1912 5.523438 AAAGAAGAGAGCTAACTATCGGG 57.477 43.478 0.00 0.00 39.21 5.14
1497 1913 6.146898 GCTAAAGAAGAGAGCTAACTATCGG 58.853 44.000 0.00 0.00 39.21 4.18
1498 1914 6.016610 AGGCTAAAGAAGAGAGCTAACTATCG 60.017 42.308 0.00 0.00 39.21 2.92
1499 1915 7.145323 CAGGCTAAAGAAGAGAGCTAACTATC 58.855 42.308 0.00 0.00 36.43 2.08
1500 1916 6.462347 GCAGGCTAAAGAAGAGAGCTAACTAT 60.462 42.308 0.00 0.00 36.43 2.12
1501 1917 5.163499 GCAGGCTAAAGAAGAGAGCTAACTA 60.163 44.000 0.00 0.00 36.43 2.24
1502 1918 4.382577 GCAGGCTAAAGAAGAGAGCTAACT 60.383 45.833 0.00 0.00 36.43 2.24
1503 1919 3.868661 GCAGGCTAAAGAAGAGAGCTAAC 59.131 47.826 0.00 0.00 36.43 2.34
1504 1920 3.772025 AGCAGGCTAAAGAAGAGAGCTAA 59.228 43.478 0.00 0.00 36.43 3.09
1505 1921 3.370104 AGCAGGCTAAAGAAGAGAGCTA 58.630 45.455 0.00 0.00 36.43 3.32
1506 1922 2.187100 AGCAGGCTAAAGAAGAGAGCT 58.813 47.619 0.00 0.00 36.43 4.09
1507 1923 2.689553 AGCAGGCTAAAGAAGAGAGC 57.310 50.000 0.00 0.00 35.39 4.09
1548 1964 8.438661 AGCATCGGCATCCTATTAGGAATTGT 62.439 42.308 16.28 0.00 42.63 2.71
1570 1986 3.181487 GCACCTGAAAAAGACAGAAAGCA 60.181 43.478 0.00 0.00 37.54 3.91
1578 1994 0.875059 CTCCGGCACCTGAAAAAGAC 59.125 55.000 0.00 0.00 0.00 3.01
1720 2140 5.995055 AGAAGCTTGATCTGAAGAAAAACG 58.005 37.500 2.10 0.00 0.00 3.60
1721 2141 8.640091 AAAAGAAGCTTGATCTGAAGAAAAAC 57.360 30.769 2.10 0.00 0.00 2.43
1722 2142 7.922811 GGAAAAGAAGCTTGATCTGAAGAAAAA 59.077 33.333 2.10 0.00 0.00 1.94
1723 2143 7.428826 GGAAAAGAAGCTTGATCTGAAGAAAA 58.571 34.615 2.10 0.00 0.00 2.29
1724 2144 6.293626 CGGAAAAGAAGCTTGATCTGAAGAAA 60.294 38.462 2.10 0.00 0.00 2.52
1725 2145 5.180117 CGGAAAAGAAGCTTGATCTGAAGAA 59.820 40.000 2.10 0.00 0.00 2.52
1873 2297 2.877154 AGCAATAGGAGGAAGAGGGA 57.123 50.000 0.00 0.00 0.00 4.20
1874 2298 2.224161 CGAAGCAATAGGAGGAAGAGGG 60.224 54.545 0.00 0.00 0.00 4.30
1885 2309 2.620251 TGATCCCCACGAAGCAATAG 57.380 50.000 0.00 0.00 0.00 1.73
1894 2318 0.250038 CTGCCTACATGATCCCCACG 60.250 60.000 0.00 0.00 0.00 4.94
1947 2380 2.799126 ACTCCGGGAAAATATGTGCA 57.201 45.000 0.00 0.00 0.00 4.57
1971 2404 6.246420 AGTATCTGTGCAAATTCAACTCAC 57.754 37.500 0.00 0.00 0.00 3.51
2029 2462 6.406370 ACATCACATATTTTGAAGACTCGGA 58.594 36.000 0.00 0.00 0.00 4.55
2120 2561 2.487762 ACATTGGTGTTGCTTATGTCGG 59.512 45.455 0.00 0.00 34.01 4.79
2121 2562 3.436704 AGACATTGGTGTTGCTTATGTCG 59.563 43.478 0.00 0.00 45.95 4.35
2148 2589 3.438087 ACAGAGCACAGTTATCATGTTGC 59.562 43.478 0.00 0.00 0.00 4.17
2151 2592 5.793817 TGTAACAGAGCACAGTTATCATGT 58.206 37.500 2.73 0.00 32.39 3.21
2209 2660 4.884164 AGGTTTGATTGAACATAGCCTAGC 59.116 41.667 0.00 0.00 0.00 3.42
2223 2674 5.654650 TGTTGTAAGTTGGACAGGTTTGATT 59.345 36.000 0.00 0.00 0.00 2.57
2224 2675 5.197451 TGTTGTAAGTTGGACAGGTTTGAT 58.803 37.500 0.00 0.00 0.00 2.57
2225 2676 4.590918 TGTTGTAAGTTGGACAGGTTTGA 58.409 39.130 0.00 0.00 0.00 2.69
2226 2677 4.974368 TGTTGTAAGTTGGACAGGTTTG 57.026 40.909 0.00 0.00 0.00 2.93
2227 2678 5.197451 TCATGTTGTAAGTTGGACAGGTTT 58.803 37.500 0.00 0.00 0.00 3.27
2270 2721 8.978874 TGTAAATTGTAGCAGATGATGGTTAT 57.021 30.769 0.00 0.00 40.89 1.89
2315 2766 7.170658 GCTCTCTGGACAATAATACTGCTTAAG 59.829 40.741 0.00 0.00 0.00 1.85
2415 2879 2.093658 TGAAGAGGTTCGATTGTAGCCC 60.094 50.000 0.00 0.00 35.17 5.19
2675 3858 5.042593 TGTACGAGTTCTTTGTTAAGCGAA 58.957 37.500 0.00 0.00 0.00 4.70
2705 3897 6.322201 TGGCTTGATCTTCCCATAATTTTCTC 59.678 38.462 0.00 0.00 0.00 2.87
2806 4931 8.474710 AGTAAGTTTCCTACACAGTAGAAAGA 57.525 34.615 5.78 0.00 0.00 2.52
2807 4932 7.537991 CGAGTAAGTTTCCTACACAGTAGAAAG 59.462 40.741 5.78 0.00 0.00 2.62
2808 4933 7.013655 ACGAGTAAGTTTCCTACACAGTAGAAA 59.986 37.037 5.78 2.80 0.00 2.52
2809 4934 6.488006 ACGAGTAAGTTTCCTACACAGTAGAA 59.512 38.462 5.78 0.00 0.00 2.10
2988 5335 9.984190 CTGACCATCATTATATCTATCCATCTG 57.016 37.037 0.00 0.00 0.00 2.90
2989 5336 9.948747 TCTGACCATCATTATATCTATCCATCT 57.051 33.333 0.00 0.00 0.00 2.90
3019 5366 7.521529 CATCTCGAAATGTTAGCAGAGAAAAA 58.478 34.615 1.35 0.00 38.11 1.94
3025 5372 4.128925 AGCATCTCGAAATGTTAGCAGA 57.871 40.909 0.00 0.00 0.00 4.26
3045 5798 1.093159 GAGCACATCCTCCTGCAAAG 58.907 55.000 0.00 0.00 35.73 2.77
3124 6764 8.696043 AGCAAAAGATGATATATGCAAACCTA 57.304 30.769 0.00 0.00 36.30 3.08
3137 6777 4.217836 TCTGAGCAGAGCAAAAGATGAT 57.782 40.909 0.00 0.00 32.82 2.45
3158 6798 9.136323 TCAGTCTGTCATTCTGTATGTATGTAT 57.864 33.333 0.00 0.00 35.64 2.29
3159 6799 8.519799 TCAGTCTGTCATTCTGTATGTATGTA 57.480 34.615 0.00 0.00 35.64 2.29
3160 6800 7.410120 TCAGTCTGTCATTCTGTATGTATGT 57.590 36.000 0.00 0.00 35.64 2.29
3161 6801 8.193438 TCTTCAGTCTGTCATTCTGTATGTATG 58.807 37.037 0.00 0.00 35.64 2.39
3193 6833 2.544277 GCTGCATGCACAGACAGAAAAA 60.544 45.455 18.46 0.00 40.25 1.94
3194 6834 1.001048 GCTGCATGCACAGACAGAAAA 60.001 47.619 18.46 0.00 40.25 2.29
3195 6835 0.594602 GCTGCATGCACAGACAGAAA 59.405 50.000 18.46 0.00 40.25 2.52
3197 6837 1.673337 GGCTGCATGCACAGACAGA 60.673 57.895 18.46 0.00 45.65 3.41
3198 6838 2.875485 GGCTGCATGCACAGACAG 59.125 61.111 18.46 7.18 45.65 3.51
3204 6844 3.766691 CAAGGGGGCTGCATGCAC 61.767 66.667 18.46 13.69 46.31 4.57
3359 7010 4.384846 GTGCAGCACAAGAAAATGAGATTG 59.615 41.667 21.22 0.00 34.08 2.67
3360 7011 4.280174 AGTGCAGCACAAGAAAATGAGATT 59.720 37.500 27.35 0.00 36.74 2.40
3361 7012 3.825014 AGTGCAGCACAAGAAAATGAGAT 59.175 39.130 27.35 0.00 36.74 2.75
3362 7013 3.004002 CAGTGCAGCACAAGAAAATGAGA 59.996 43.478 27.35 0.00 36.74 3.27
3363 7014 3.004002 TCAGTGCAGCACAAGAAAATGAG 59.996 43.478 27.35 4.20 36.74 2.90
3365 7016 3.243301 ACTCAGTGCAGCACAAGAAAATG 60.243 43.478 27.35 14.51 36.74 2.32
3366 7017 2.954318 ACTCAGTGCAGCACAAGAAAAT 59.046 40.909 27.35 9.99 36.74 1.82
3367 7018 2.368439 ACTCAGTGCAGCACAAGAAAA 58.632 42.857 27.35 5.02 36.74 2.29
3369 7020 2.158971 TGTACTCAGTGCAGCACAAGAA 60.159 45.455 27.35 8.11 36.74 2.52
3370 7021 1.412343 TGTACTCAGTGCAGCACAAGA 59.588 47.619 27.35 21.48 36.74 3.02
3371 7022 1.869774 TGTACTCAGTGCAGCACAAG 58.130 50.000 27.35 23.56 36.74 3.16
3373 7024 1.344114 TCATGTACTCAGTGCAGCACA 59.656 47.619 27.35 6.86 36.74 4.57
3374 7025 2.084610 TCATGTACTCAGTGCAGCAC 57.915 50.000 18.55 18.55 30.87 4.40
3375 7026 2.837532 TTCATGTACTCAGTGCAGCA 57.162 45.000 0.94 0.00 30.87 4.41
3376 7027 4.183865 TGTATTCATGTACTCAGTGCAGC 58.816 43.478 0.94 0.00 30.87 5.25
3397 7663 4.885907 ACAGCCTCCAAACATCTATTCATG 59.114 41.667 0.00 0.00 0.00 3.07
3398 7664 5.121380 ACAGCCTCCAAACATCTATTCAT 57.879 39.130 0.00 0.00 0.00 2.57
3401 7667 5.882557 CAGTAACAGCCTCCAAACATCTATT 59.117 40.000 0.00 0.00 0.00 1.73
3404 7670 3.073062 ACAGTAACAGCCTCCAAACATCT 59.927 43.478 0.00 0.00 0.00 2.90
3553 7859 6.996509 TCCAAAATAGCTTCAATTCTTTGCT 58.003 32.000 0.00 0.00 37.72 3.91
3554 7860 6.870439 ACTCCAAAATAGCTTCAATTCTTTGC 59.130 34.615 0.00 0.00 32.61 3.68
3561 7867 9.466497 TCAGAAATACTCCAAAATAGCTTCAAT 57.534 29.630 0.00 0.00 0.00 2.57
3585 7891 6.267492 TCAAGTAGAGTAGGATCAGGATCA 57.733 41.667 11.12 0.00 39.54 2.92
3586 7892 6.719370 ACATCAAGTAGAGTAGGATCAGGATC 59.281 42.308 0.55 0.55 37.11 3.36
3587 7893 6.493115 CACATCAAGTAGAGTAGGATCAGGAT 59.507 42.308 0.00 0.00 0.00 3.24
3588 7894 5.830457 CACATCAAGTAGAGTAGGATCAGGA 59.170 44.000 0.00 0.00 0.00 3.86
3589 7895 5.830457 TCACATCAAGTAGAGTAGGATCAGG 59.170 44.000 0.00 0.00 0.00 3.86
3590 7896 6.951062 TCACATCAAGTAGAGTAGGATCAG 57.049 41.667 0.00 0.00 0.00 2.90
3623 7929 1.933853 GGATGTTTTCTGGACCGATCG 59.066 52.381 8.51 8.51 0.00 3.69
3772 8191 0.941463 GGACTGTGTGCACTCACTCG 60.941 60.000 19.41 11.31 43.49 4.18
3783 8202 3.181476 GCCAAATTTGTTGAGGACTGTGT 60.181 43.478 16.73 0.00 0.00 3.72
3784 8203 3.181477 TGCCAAATTTGTTGAGGACTGTG 60.181 43.478 16.73 0.00 0.00 3.66
3785 8204 3.030291 TGCCAAATTTGTTGAGGACTGT 58.970 40.909 16.73 0.00 0.00 3.55
3786 8205 3.181477 TGTGCCAAATTTGTTGAGGACTG 60.181 43.478 16.73 0.00 0.00 3.51
3787 8206 3.030291 TGTGCCAAATTTGTTGAGGACT 58.970 40.909 16.73 0.00 0.00 3.85
3788 8207 3.451141 TGTGCCAAATTTGTTGAGGAC 57.549 42.857 16.73 12.39 0.00 3.85
3790 8209 3.429543 CGAATGTGCCAAATTTGTTGAGG 59.570 43.478 16.73 2.40 0.00 3.86
3792 8211 4.037327 TCTCGAATGTGCCAAATTTGTTGA 59.963 37.500 16.73 5.85 0.00 3.18
3794 8213 4.549458 CTCTCGAATGTGCCAAATTTGTT 58.451 39.130 16.73 4.19 0.00 2.83
3795 8214 3.057315 CCTCTCGAATGTGCCAAATTTGT 60.057 43.478 16.73 0.00 0.00 2.83
3797 8216 3.420893 TCCTCTCGAATGTGCCAAATTT 58.579 40.909 0.00 0.00 0.00 1.82
3799 8218 2.787473 TCCTCTCGAATGTGCCAAAT 57.213 45.000 0.00 0.00 0.00 2.32
3800 8219 2.559698 TTCCTCTCGAATGTGCCAAA 57.440 45.000 0.00 0.00 0.00 3.28
3801 8220 2.559698 TTTCCTCTCGAATGTGCCAA 57.440 45.000 0.00 0.00 0.00 4.52
3802 8221 2.559698 TTTTCCTCTCGAATGTGCCA 57.440 45.000 0.00 0.00 0.00 4.92
3803 8222 3.938963 TGTATTTTCCTCTCGAATGTGCC 59.061 43.478 0.00 0.00 0.00 5.01
3804 8223 5.741388 ATGTATTTTCCTCTCGAATGTGC 57.259 39.130 0.00 0.00 0.00 4.57
3840 8276 8.877808 TCACTCATAGTATCATAAGCAAACTG 57.122 34.615 0.00 0.00 0.00 3.16
3841 8277 8.700051 ACTCACTCATAGTATCATAAGCAAACT 58.300 33.333 0.00 0.00 0.00 2.66
3843 8279 7.439356 GCACTCACTCATAGTATCATAAGCAAA 59.561 37.037 0.00 0.00 0.00 3.68
3844 8280 6.925718 GCACTCACTCATAGTATCATAAGCAA 59.074 38.462 0.00 0.00 0.00 3.91
3846 8282 6.450545 TGCACTCACTCATAGTATCATAAGC 58.549 40.000 0.00 0.00 0.00 3.09
3847 8283 7.089538 CCTGCACTCACTCATAGTATCATAAG 58.910 42.308 0.00 0.00 0.00 1.73
3849 8285 6.071320 ACCTGCACTCACTCATAGTATCATA 58.929 40.000 0.00 0.00 0.00 2.15
3850 8286 4.898265 ACCTGCACTCACTCATAGTATCAT 59.102 41.667 0.00 0.00 0.00 2.45
3851 8287 4.281657 ACCTGCACTCACTCATAGTATCA 58.718 43.478 0.00 0.00 0.00 2.15
3853 8289 4.202060 CGAACCTGCACTCACTCATAGTAT 60.202 45.833 0.00 0.00 0.00 2.12
3854 8290 3.128764 CGAACCTGCACTCACTCATAGTA 59.871 47.826 0.00 0.00 0.00 1.82
3855 8291 2.094494 CGAACCTGCACTCACTCATAGT 60.094 50.000 0.00 0.00 0.00 2.12
3856 8292 2.094494 ACGAACCTGCACTCACTCATAG 60.094 50.000 0.00 0.00 0.00 2.23
3858 8294 0.681733 ACGAACCTGCACTCACTCAT 59.318 50.000 0.00 0.00 0.00 2.90
3859 8295 0.249447 CACGAACCTGCACTCACTCA 60.249 55.000 0.00 0.00 0.00 3.41
3860 8296 0.032130 TCACGAACCTGCACTCACTC 59.968 55.000 0.00 0.00 0.00 3.51
3861 8297 0.464036 TTCACGAACCTGCACTCACT 59.536 50.000 0.00 0.00 0.00 3.41
3862 8298 0.861837 CTTCACGAACCTGCACTCAC 59.138 55.000 0.00 0.00 0.00 3.51
3974 8436 3.846383 GCTTGAACGTCTTCTTCACAAGC 60.846 47.826 0.00 0.00 46.74 4.01
4050 8536 4.974368 TTGCCGTTTTTCTTCTTTCTCA 57.026 36.364 0.00 0.00 0.00 3.27
4111 8602 3.375610 ACAACATACACAAAGTTGCGACA 59.624 39.130 6.90 0.00 44.77 4.35
4112 8603 3.947626 ACAACATACACAAAGTTGCGAC 58.052 40.909 0.00 0.00 44.77 5.19
4113 8604 5.736486 TTACAACATACACAAAGTTGCGA 57.264 34.783 0.00 0.00 44.77 5.10
4115 8606 7.922505 TGAATTACAACATACACAAAGTTGC 57.077 32.000 0.00 0.00 44.77 4.17
4160 8651 4.080638 GGGATCAATCAGTCTTGTTCCTCT 60.081 45.833 11.61 0.00 41.60 3.69
4161 8652 4.080638 AGGGATCAATCAGTCTTGTTCCTC 60.081 45.833 11.61 4.95 41.60 3.71
4162 8653 3.848975 AGGGATCAATCAGTCTTGTTCCT 59.151 43.478 11.61 0.00 41.60 3.36
4167 8658 4.380233 GCACAAAGGGATCAATCAGTCTTG 60.380 45.833 0.00 0.00 0.00 3.02
4234 8735 2.011947 GCATGCTACTGACTGCATTCA 58.988 47.619 11.37 6.58 46.29 2.57
4235 8736 2.011947 TGCATGCTACTGACTGCATTC 58.988 47.619 20.33 0.00 46.29 2.67
4238 8739 1.808343 CTTTGCATGCTACTGACTGCA 59.192 47.619 20.33 0.00 42.48 4.41
4239 8740 1.808945 ACTTTGCATGCTACTGACTGC 59.191 47.619 20.33 0.00 35.21 4.40
4240 8741 4.224433 CAAACTTTGCATGCTACTGACTG 58.776 43.478 20.33 4.63 0.00 3.51
4241 8742 3.254166 CCAAACTTTGCATGCTACTGACT 59.746 43.478 20.33 0.00 0.00 3.41
4306 9518 1.607612 CTTGGGCGGTAGGGTCAAT 59.392 57.895 0.00 0.00 0.00 2.57
4308 9520 3.712907 GCTTGGGCGGTAGGGTCA 61.713 66.667 0.00 0.00 0.00 4.02
4362 9586 3.978164 AGCTCTATGAGGTGGGGC 58.022 61.111 0.00 0.00 39.04 5.80
4411 9635 1.013596 TGGTTTCTGATTATGCGCCG 58.986 50.000 4.18 0.00 0.00 6.46
4418 9642 2.235402 GACTCCGGGTGGTTTCTGATTA 59.765 50.000 0.00 0.00 36.30 1.75
4443 9667 2.668550 GACAGTGGACGTTGGGGC 60.669 66.667 0.00 0.00 0.00 5.80
4470 9694 1.129437 GCAGTTTGCACGGATCTCTTC 59.871 52.381 0.00 0.00 44.26 2.87
4472 9696 2.846371 GCAGTTTGCACGGATCTCT 58.154 52.632 0.00 0.00 44.26 3.10
4492 9716 1.069823 CGCCTTGGAGAGTCAGCATAT 59.930 52.381 0.00 0.00 0.00 1.78
4498 9722 1.219124 GCATCGCCTTGGAGAGTCA 59.781 57.895 0.00 0.00 0.00 3.41
4511 9735 2.159653 CGTTTCCTTCTTTGAGGCATCG 60.160 50.000 0.00 0.00 36.71 3.84
4532 9756 1.664965 GGATGACGGCGGCTACATC 60.665 63.158 25.24 25.24 38.53 3.06
4534 9758 3.845259 GGGATGACGGCGGCTACA 61.845 66.667 16.45 7.57 0.00 2.74
4550 9774 4.891727 CGGATGGTCGAAGCGGGG 62.892 72.222 0.00 0.00 0.00 5.73
4567 9791 4.767928 TCTCCGGGATAAATCTCTAGCTTC 59.232 45.833 0.00 0.00 0.00 3.86
4617 9841 1.071857 GTCGTTCCCCTTCTTGAAGGT 59.928 52.381 23.12 0.00 38.28 3.50
4674 9898 2.677875 GGCCAAAGTCCAGCCCTG 60.678 66.667 0.00 0.00 41.00 4.45
4688 9912 4.416738 GTGGTGGAGCTCTGGGCC 62.417 72.222 14.64 10.98 43.05 5.80
4694 9918 1.188219 TCAGAGGTGTGGTGGAGCTC 61.188 60.000 4.71 4.71 38.08 4.09
4707 9931 2.910199 TGAATTGCTCGGATTCAGAGG 58.090 47.619 14.44 0.00 38.29 3.69
4710 9934 4.083431 GGATCATGAATTGCTCGGATTCAG 60.083 45.833 0.00 0.10 44.18 3.02
4711 9935 3.817084 GGATCATGAATTGCTCGGATTCA 59.183 43.478 0.00 2.43 44.81 2.57
4738 9962 1.066858 TCAAGGAATCTCTGCACCGAC 60.067 52.381 0.00 0.00 0.00 4.79
4746 9970 3.330267 GTCGTTGCTTCAAGGAATCTCT 58.670 45.455 0.00 0.00 39.40 3.10
4785 10009 3.542648 TCTCTCATATCCACGACGTCTT 58.457 45.455 14.70 0.03 0.00 3.01
4788 10012 4.611943 CAATTCTCTCATATCCACGACGT 58.388 43.478 0.00 0.00 0.00 4.34
4820 10044 4.520492 GGTCAGGTGGCATATAAATTGGAG 59.480 45.833 0.00 0.00 0.00 3.86
4834 10058 1.215647 GCTAGACGTGGTCAGGTGG 59.784 63.158 0.00 0.00 34.60 4.61
4861 10085 1.737793 CACGCTACATTGGTCCTTTCC 59.262 52.381 0.00 0.00 0.00 3.13
4868 10092 4.617875 GCTCCACGCTACATTGGT 57.382 55.556 0.00 0.00 34.19 3.67
4879 10103 1.168714 CAAGGGCAAGTTAGCTCCAC 58.831 55.000 0.00 0.00 34.85 4.02
4880 10104 1.064003 TCAAGGGCAAGTTAGCTCCA 58.936 50.000 0.00 0.00 34.85 3.86
4881 10105 2.426842 ATCAAGGGCAAGTTAGCTCC 57.573 50.000 0.00 0.00 34.85 4.70
4882 10106 2.685388 GGAATCAAGGGCAAGTTAGCTC 59.315 50.000 0.00 0.00 34.37 4.09
4883 10107 2.728007 GGAATCAAGGGCAAGTTAGCT 58.272 47.619 0.00 0.00 34.17 3.32
4884 10108 1.401905 CGGAATCAAGGGCAAGTTAGC 59.598 52.381 0.00 0.00 0.00 3.09
4885 10109 2.985896 TCGGAATCAAGGGCAAGTTAG 58.014 47.619 0.00 0.00 0.00 2.34
4886 10110 3.343617 CTTCGGAATCAAGGGCAAGTTA 58.656 45.455 0.00 0.00 0.00 2.24
4887 10111 2.162681 CTTCGGAATCAAGGGCAAGTT 58.837 47.619 0.00 0.00 0.00 2.66
4888 10112 1.826385 CTTCGGAATCAAGGGCAAGT 58.174 50.000 0.00 0.00 0.00 3.16
4909 10133 1.139853 CTCCTATGAAGGGCAGTCACC 59.860 57.143 0.00 0.00 43.84 4.02
4914 10138 1.833630 TGTCACTCCTATGAAGGGCAG 59.166 52.381 0.00 0.00 43.84 4.85
4954 10178 3.492383 CAGAAGAGCAATTACGATCGCAT 59.508 43.478 16.60 4.63 0.00 4.73
4962 10212 1.666189 GACCGCCAGAAGAGCAATTAC 59.334 52.381 0.00 0.00 0.00 1.89
4995 10245 4.267928 GTCCGTATTGTCCGAGAAAATCTG 59.732 45.833 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.