Multiple sequence alignment - TraesCS6D01G408100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G408100 chr6D 100.000 4613 0 0 1 4613 473518451 473513839 0.000000e+00 8519
1 TraesCS6D01G408100 chr6A 94.348 3167 67 36 744 3851 616349156 616352269 0.000000e+00 4754
2 TraesCS6D01G408100 chr6B 92.955 2697 75 39 894 3544 718981281 718978654 0.000000e+00 3821
3 TraesCS6D01G408100 chr6B 94.693 716 35 1 1 713 641301568 641300853 0.000000e+00 1109
4 TraesCS6D01G408100 chr6B 94.595 111 1 5 792 898 718981432 718981323 2.850000e-37 167
5 TraesCS6D01G408100 chr6B 87.778 90 5 4 3656 3739 718978503 718978414 2.940000e-17 100
6 TraesCS6D01G408100 chr7D 97.914 767 12 4 3850 4613 263971552 263970787 0.000000e+00 1325
7 TraesCS6D01G408100 chr7D 88.342 772 61 18 3849 4613 580170696 580169947 0.000000e+00 900
8 TraesCS6D01G408100 chr2D 97.781 766 14 3 3850 4613 55388160 55388924 0.000000e+00 1317
9 TraesCS6D01G408100 chr2D 94.545 715 34 3 1 712 600313682 600312970 0.000000e+00 1099
10 TraesCS6D01G408100 chr2D 94.413 716 36 2 1 713 590029194 590028480 0.000000e+00 1098
11 TraesCS6D01G408100 chr5A 94.141 768 33 10 3848 4613 36023126 36023883 0.000000e+00 1158
12 TraesCS6D01G408100 chr5A 87.404 778 68 19 3850 4613 705379885 705379124 0.000000e+00 867
13 TraesCS6D01G408100 chr5D 93.063 764 45 7 3853 4613 550983989 550983231 0.000000e+00 1110
14 TraesCS6D01G408100 chr5D 87.326 789 77 16 3843 4613 440968185 440967402 0.000000e+00 881
15 TraesCS6D01G408100 chr3B 94.561 717 36 1 1 714 256360573 256361289 0.000000e+00 1105
16 TraesCS6D01G408100 chr4D 94.175 721 36 4 1 718 28487971 28488688 0.000000e+00 1094
17 TraesCS6D01G408100 chr4A 94.290 718 36 3 1 715 728115007 728114292 0.000000e+00 1094
18 TraesCS6D01G408100 chr7B 93.931 725 40 2 1 721 632802270 632802994 0.000000e+00 1092
19 TraesCS6D01G408100 chr7B 91.146 768 58 8 3850 4613 74585720 74586481 0.000000e+00 1033
20 TraesCS6D01G408100 chr2A 94.142 717 38 2 1 713 765216270 765215554 0.000000e+00 1088
21 TraesCS6D01G408100 chr4B 93.906 722 39 3 1 719 81363052 81362333 0.000000e+00 1085
22 TraesCS6D01G408100 chr3D 89.610 770 69 10 3848 4613 132927625 132928387 0.000000e+00 968
23 TraesCS6D01G408100 chr1B 83.333 156 20 5 2716 2871 184771256 184771107 6.220000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G408100 chr6D 473513839 473518451 4612 True 8519.000000 8519 100.000 1 4613 1 chr6D.!!$R1 4612
1 TraesCS6D01G408100 chr6A 616349156 616352269 3113 False 4754.000000 4754 94.348 744 3851 1 chr6A.!!$F1 3107
2 TraesCS6D01G408100 chr6B 718978414 718981432 3018 True 1362.666667 3821 91.776 792 3739 3 chr6B.!!$R2 2947
3 TraesCS6D01G408100 chr6B 641300853 641301568 715 True 1109.000000 1109 94.693 1 713 1 chr6B.!!$R1 712
4 TraesCS6D01G408100 chr7D 263970787 263971552 765 True 1325.000000 1325 97.914 3850 4613 1 chr7D.!!$R1 763
5 TraesCS6D01G408100 chr7D 580169947 580170696 749 True 900.000000 900 88.342 3849 4613 1 chr7D.!!$R2 764
6 TraesCS6D01G408100 chr2D 55388160 55388924 764 False 1317.000000 1317 97.781 3850 4613 1 chr2D.!!$F1 763
7 TraesCS6D01G408100 chr2D 600312970 600313682 712 True 1099.000000 1099 94.545 1 712 1 chr2D.!!$R2 711
8 TraesCS6D01G408100 chr2D 590028480 590029194 714 True 1098.000000 1098 94.413 1 713 1 chr2D.!!$R1 712
9 TraesCS6D01G408100 chr5A 36023126 36023883 757 False 1158.000000 1158 94.141 3848 4613 1 chr5A.!!$F1 765
10 TraesCS6D01G408100 chr5A 705379124 705379885 761 True 867.000000 867 87.404 3850 4613 1 chr5A.!!$R1 763
11 TraesCS6D01G408100 chr5D 550983231 550983989 758 True 1110.000000 1110 93.063 3853 4613 1 chr5D.!!$R2 760
12 TraesCS6D01G408100 chr5D 440967402 440968185 783 True 881.000000 881 87.326 3843 4613 1 chr5D.!!$R1 770
13 TraesCS6D01G408100 chr3B 256360573 256361289 716 False 1105.000000 1105 94.561 1 714 1 chr3B.!!$F1 713
14 TraesCS6D01G408100 chr4D 28487971 28488688 717 False 1094.000000 1094 94.175 1 718 1 chr4D.!!$F1 717
15 TraesCS6D01G408100 chr4A 728114292 728115007 715 True 1094.000000 1094 94.290 1 715 1 chr4A.!!$R1 714
16 TraesCS6D01G408100 chr7B 632802270 632802994 724 False 1092.000000 1092 93.931 1 721 1 chr7B.!!$F2 720
17 TraesCS6D01G408100 chr7B 74585720 74586481 761 False 1033.000000 1033 91.146 3850 4613 1 chr7B.!!$F1 763
18 TraesCS6D01G408100 chr2A 765215554 765216270 716 True 1088.000000 1088 94.142 1 713 1 chr2A.!!$R1 712
19 TraesCS6D01G408100 chr4B 81362333 81363052 719 True 1085.000000 1085 93.906 1 719 1 chr4B.!!$R1 718
20 TraesCS6D01G408100 chr3D 132927625 132928387 762 False 968.000000 968 89.610 3848 4613 1 chr3D.!!$F1 765

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
308 310 1.129251 GTGGTCTGCATCAACGACATG 59.871 52.381 5.52 0.00 0.00 3.21 F
968 1031 1.145759 CCATCCATCCAACGACGACG 61.146 60.000 5.58 5.58 45.75 5.12 F
973 1036 1.154338 ATCCAACGACGACGACGAC 60.154 57.895 25.15 7.02 42.66 4.34 F
1780 1855 1.407437 GGCTGATCAACCGGATGAAGT 60.407 52.381 19.12 2.64 36.00 3.01 F
2571 2646 0.398381 CCAAGGAGGAGGAGGAGGAG 60.398 65.000 0.00 0.00 41.22 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1427 1490 4.467084 GATGGAAGGTGGCGGCGA 62.467 66.667 12.98 0.0 0.0 5.54 R
2566 2641 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.0 0.0 3.71 R
2567 2642 1.087725 TCCTCCTCCTCCTCCTCCT 59.912 63.158 0.00 0.0 0.0 3.69 R
2991 3096 0.392193 CCTGGTGCATCGCTTCTTCT 60.392 55.000 0.00 0.0 0.0 2.85 R
3708 3881 2.039418 TCGATTACATGCCTGCCTACT 58.961 47.619 0.00 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 110 3.895232 TTCTTCGGATCCTTCCTTGAG 57.105 47.619 10.75 0.00 40.17 3.02
152 153 1.482182 GGGATGGATTTGGAAACCAGC 59.518 52.381 0.00 0.00 39.05 4.85
308 310 1.129251 GTGGTCTGCATCAACGACATG 59.871 52.381 5.52 0.00 0.00 3.21
465 470 3.775261 ACGGTAAGGGCTTCACTTTTA 57.225 42.857 0.00 0.00 0.00 1.52
593 598 4.363990 CGGAGGCAGCTGACGTGT 62.364 66.667 20.43 0.00 0.00 4.49
702 707 7.865889 TGATATGAATGAGACACGTATTACCAC 59.134 37.037 0.00 0.00 0.00 4.16
707 712 3.184541 GAGACACGTATTACCACGCAAT 58.815 45.455 0.00 0.00 45.77 3.56
715 720 7.016466 CACGTATTACCACGCAATAAAAAGAA 58.984 34.615 0.00 0.00 45.77 2.52
716 721 7.534578 CACGTATTACCACGCAATAAAAAGAAA 59.465 33.333 0.00 0.00 45.77 2.52
717 722 8.074972 ACGTATTACCACGCAATAAAAAGAAAA 58.925 29.630 0.00 0.00 45.77 2.29
718 723 8.903723 CGTATTACCACGCAATAAAAAGAAAAA 58.096 29.630 0.00 0.00 34.78 1.94
784 789 6.393720 GCAATGAATTTATCAAGTGCGTTT 57.606 33.333 0.00 0.00 42.54 3.60
785 790 7.504922 GCAATGAATTTATCAAGTGCGTTTA 57.495 32.000 0.00 0.00 42.54 2.01
876 921 2.560861 GTACGTACGTGCCGTCCA 59.439 61.111 30.25 5.88 41.54 4.02
968 1031 1.145759 CCATCCATCCAACGACGACG 61.146 60.000 5.58 5.58 45.75 5.12
973 1036 1.154338 ATCCAACGACGACGACGAC 60.154 57.895 25.15 7.02 42.66 4.34
983 1046 1.978782 ACGACGACGACGAATTAAACC 59.021 47.619 25.15 0.00 42.66 3.27
985 1048 2.595536 CGACGACGACGAATTAAACCAT 59.404 45.455 15.32 0.00 42.66 3.55
986 1049 3.300754 CGACGACGACGAATTAAACCATC 60.301 47.826 15.32 0.00 42.66 3.51
989 1052 3.365520 CGACGACGAATTAAACCATCACA 59.634 43.478 0.00 0.00 42.66 3.58
990 1053 4.032445 CGACGACGAATTAAACCATCACAT 59.968 41.667 0.00 0.00 42.66 3.21
991 1054 5.464965 ACGACGAATTAAACCATCACATC 57.535 39.130 0.00 0.00 0.00 3.06
992 1055 4.932799 ACGACGAATTAAACCATCACATCA 59.067 37.500 0.00 0.00 0.00 3.07
993 1056 5.163893 ACGACGAATTAAACCATCACATCAC 60.164 40.000 0.00 0.00 0.00 3.06
994 1057 5.163903 CGACGAATTAAACCATCACATCACA 60.164 40.000 0.00 0.00 0.00 3.58
995 1058 6.182039 ACGAATTAAACCATCACATCACAG 57.818 37.500 0.00 0.00 0.00 3.66
1427 1490 1.980772 GCATGCTCCACCCAAGCTT 60.981 57.895 11.37 0.00 40.50 3.74
1688 1763 1.684386 CGCTCCTCCTCTTGCTCCAT 61.684 60.000 0.00 0.00 0.00 3.41
1780 1855 1.407437 GGCTGATCAACCGGATGAAGT 60.407 52.381 19.12 2.64 36.00 3.01
2352 2427 4.435436 TACCGCTCGCACTGCCTG 62.435 66.667 0.00 0.00 0.00 4.85
2569 2644 1.706575 TCCAAGGAGGAGGAGGAGG 59.293 63.158 0.00 0.00 43.07 4.30
2570 2645 0.855855 TCCAAGGAGGAGGAGGAGGA 60.856 60.000 0.00 0.00 43.07 3.71
2571 2646 0.398381 CCAAGGAGGAGGAGGAGGAG 60.398 65.000 0.00 0.00 41.22 3.69
2572 2647 0.398381 CAAGGAGGAGGAGGAGGAGG 60.398 65.000 0.00 0.00 0.00 4.30
2573 2648 0.556380 AAGGAGGAGGAGGAGGAGGA 60.556 60.000 0.00 0.00 0.00 3.71
2574 2649 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
2575 2650 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
2576 2651 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
2577 2652 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
2578 2653 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
2579 2654 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
2580 2655 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
2581 2656 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
2582 2657 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
2583 2658 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
2619 2694 0.904865 ACTCGTGGGAGATGGAGCAA 60.905 55.000 0.00 0.00 43.27 3.91
2748 2850 4.794439 TCGCTGGTGATCGTGCCG 62.794 66.667 0.00 0.00 0.00 5.69
2942 3047 1.376942 GAGACCTCGACCTCGACCA 60.377 63.158 0.00 0.00 44.22 4.02
2943 3048 1.646624 GAGACCTCGACCTCGACCAC 61.647 65.000 0.00 0.00 44.22 4.16
2946 3051 2.479650 CTCGACCTCGACCACGAC 59.520 66.667 0.00 0.00 44.22 4.34
2947 3052 3.036783 CTCGACCTCGACCACGACC 62.037 68.421 0.00 0.00 44.22 4.79
2955 3060 2.257676 GACCACGACCACGACCTC 59.742 66.667 0.00 0.00 42.66 3.85
2970 3075 3.591835 CTCGAGGAGGAGAGCGGC 61.592 72.222 3.91 0.00 36.08 6.53
2991 3096 1.525765 TGCTTCGGTGCAGCAAGAA 60.526 52.632 23.30 15.70 44.42 2.52
3522 3642 1.306642 CCTGGAAGCAGAAGCAGCAG 61.307 60.000 0.00 0.00 45.49 4.24
3523 3643 1.924320 CTGGAAGCAGAAGCAGCAGC 61.924 60.000 0.00 0.00 45.49 5.25
3526 3646 1.228184 AAGCAGAAGCAGCAGCAGT 60.228 52.632 3.17 0.00 45.49 4.40
3527 3647 1.235948 AAGCAGAAGCAGCAGCAGTC 61.236 55.000 3.17 0.00 45.49 3.51
3708 3881 0.593618 ACACACGCACAAACACACAA 59.406 45.000 0.00 0.00 0.00 3.33
3765 3942 3.760151 TCAGGATTGATTGCAAAGACTGG 59.240 43.478 1.71 0.00 37.59 4.00
4044 4232 1.686052 TGGGCTGAATTTTGGTGTGTC 59.314 47.619 0.00 0.00 0.00 3.67
4050 4238 2.964464 TGAATTTTGGTGTGTCCATGCT 59.036 40.909 0.00 0.00 46.60 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 110 1.674057 CATAGGACCGATGGCCTCC 59.326 63.158 3.32 1.12 32.93 4.30
152 153 2.009774 CGCCATCCTTACTTGAACAGG 58.990 52.381 0.00 0.00 0.00 4.00
222 224 4.430423 GAGCAAACGCCGTCGCAG 62.430 66.667 13.17 0.00 39.84 5.18
272 274 1.065491 ACCACAATCTGCATCCGCTTA 60.065 47.619 0.00 0.00 39.64 3.09
300 302 0.677288 TCCGTCTTCCACATGTCGTT 59.323 50.000 0.00 0.00 0.00 3.85
308 310 1.639298 GCACATGCTCCGTCTTCCAC 61.639 60.000 0.00 0.00 38.21 4.02
330 332 1.079819 CATCCACGAACCACGAGCT 60.080 57.895 0.00 0.00 45.77 4.09
431 436 3.991773 CCTTACCGTTGAACGAATCAGAA 59.008 43.478 20.47 2.99 46.05 3.02
585 590 1.327460 CTTGACACCAACACACGTCAG 59.673 52.381 0.00 0.00 39.39 3.51
593 598 1.762370 TCTCTGAGCTTGACACCAACA 59.238 47.619 0.00 0.00 0.00 3.33
632 637 4.753107 ACGTAAAGACCGACATGACAAAAT 59.247 37.500 0.00 0.00 0.00 1.82
732 737 2.899900 TGTTGCTAGATGTCAGGTGACT 59.100 45.455 11.31 0.00 44.99 3.41
733 738 3.319137 TGTTGCTAGATGTCAGGTGAC 57.681 47.619 2.99 2.99 44.97 3.67
734 739 4.040339 TCTTTGTTGCTAGATGTCAGGTGA 59.960 41.667 0.00 0.00 0.00 4.02
735 740 4.318332 TCTTTGTTGCTAGATGTCAGGTG 58.682 43.478 0.00 0.00 0.00 4.00
736 741 4.623932 TCTTTGTTGCTAGATGTCAGGT 57.376 40.909 0.00 0.00 0.00 4.00
737 742 5.481200 CATCTTTGTTGCTAGATGTCAGG 57.519 43.478 0.00 0.00 41.70 3.86
800 805 9.869757 ATCCACCATTTTAGTAATAAAAAGTGC 57.130 29.630 23.16 0.00 36.72 4.40
876 921 6.183361 GCTATATATGGGTGGATGGATTGGAT 60.183 42.308 0.00 0.00 0.00 3.41
968 1031 4.914312 TGTGATGGTTTAATTCGTCGTC 57.086 40.909 0.00 0.00 0.00 4.20
973 1036 5.353956 TCCTGTGATGTGATGGTTTAATTCG 59.646 40.000 0.00 0.00 0.00 3.34
974 1037 6.183360 CCTCCTGTGATGTGATGGTTTAATTC 60.183 42.308 0.00 0.00 0.00 2.17
976 1039 5.044919 TCCTCCTGTGATGTGATGGTTTAAT 60.045 40.000 0.00 0.00 0.00 1.40
977 1040 4.288366 TCCTCCTGTGATGTGATGGTTTAA 59.712 41.667 0.00 0.00 0.00 1.52
978 1041 3.843619 TCCTCCTGTGATGTGATGGTTTA 59.156 43.478 0.00 0.00 0.00 2.01
979 1042 2.644299 TCCTCCTGTGATGTGATGGTTT 59.356 45.455 0.00 0.00 0.00 3.27
980 1043 2.269023 TCCTCCTGTGATGTGATGGTT 58.731 47.619 0.00 0.00 0.00 3.67
983 1046 2.436911 TCCATCCTCCTGTGATGTGATG 59.563 50.000 0.00 0.00 38.32 3.07
985 1048 2.113807 CTCCATCCTCCTGTGATGTGA 58.886 52.381 0.00 0.00 38.32 3.58
986 1049 1.836166 ACTCCATCCTCCTGTGATGTG 59.164 52.381 0.00 0.00 38.32 3.21
989 1052 1.799933 GGACTCCATCCTCCTGTGAT 58.200 55.000 0.00 0.00 45.22 3.06
990 1053 0.684479 CGGACTCCATCCTCCTGTGA 60.684 60.000 0.00 0.00 46.69 3.58
991 1054 1.680522 CCGGACTCCATCCTCCTGTG 61.681 65.000 0.00 0.00 46.69 3.66
992 1055 1.381872 CCGGACTCCATCCTCCTGT 60.382 63.158 0.00 0.00 46.69 4.00
993 1056 2.801631 GCCGGACTCCATCCTCCTG 61.802 68.421 5.05 0.00 46.69 3.86
994 1057 2.444895 GCCGGACTCCATCCTCCT 60.445 66.667 5.05 0.00 46.69 3.69
995 1058 3.917760 CGCCGGACTCCATCCTCC 61.918 72.222 5.05 0.00 46.69 4.30
1427 1490 4.467084 GATGGAAGGTGGCGGCGA 62.467 66.667 12.98 0.00 0.00 5.54
2566 2641 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
2567 2642 1.087725 TCCTCCTCCTCCTCCTCCT 59.912 63.158 0.00 0.00 0.00 3.69
2568 2643 1.231928 GTCCTCCTCCTCCTCCTCC 59.768 68.421 0.00 0.00 0.00 4.30
2569 2644 1.152839 CGTCCTCCTCCTCCTCCTC 60.153 68.421 0.00 0.00 0.00 3.71
2570 2645 3.011885 CGTCCTCCTCCTCCTCCT 58.988 66.667 0.00 0.00 0.00 3.69
2571 2646 2.835895 GCGTCCTCCTCCTCCTCC 60.836 72.222 0.00 0.00 0.00 4.30
2572 2647 2.835895 GGCGTCCTCCTCCTCCTC 60.836 72.222 0.00 0.00 0.00 3.71
2573 2648 4.467107 GGGCGTCCTCCTCCTCCT 62.467 72.222 0.00 0.00 0.00 3.69
2631 2706 4.374702 GTGCTGAAGGCGTGCACG 62.375 66.667 34.01 34.01 45.62 5.34
2748 2850 2.970974 GCGCTGCTCCTTGTGGAAC 61.971 63.158 0.00 0.00 42.66 3.62
2942 3047 3.054503 CCTCGAGGTCGTGGTCGT 61.055 66.667 24.04 0.00 45.02 4.34
2974 3079 1.208614 CTTCTTGCTGCACCGAAGC 59.791 57.895 20.81 0.00 41.22 3.86
2975 3080 1.196354 CTTCTTCTTGCTGCACCGAAG 59.804 52.381 24.13 24.13 35.40 3.79
2976 3081 1.202639 TCTTCTTCTTGCTGCACCGAA 60.203 47.619 0.00 7.59 0.00 4.30
2977 3082 0.392706 TCTTCTTCTTGCTGCACCGA 59.607 50.000 0.00 0.00 0.00 4.69
2978 3083 1.196354 CTTCTTCTTCTTGCTGCACCG 59.804 52.381 0.00 0.00 0.00 4.94
2980 3085 1.399471 CGCTTCTTCTTCTTGCTGCAC 60.399 52.381 0.00 0.00 0.00 4.57
2981 3086 0.870393 CGCTTCTTCTTCTTGCTGCA 59.130 50.000 0.00 0.00 0.00 4.41
2986 3091 2.159599 GGTGCATCGCTTCTTCTTCTTG 60.160 50.000 0.00 0.00 0.00 3.02
2987 3092 2.079925 GGTGCATCGCTTCTTCTTCTT 58.920 47.619 0.00 0.00 0.00 2.52
2991 3096 0.392193 CCTGGTGCATCGCTTCTTCT 60.392 55.000 0.00 0.00 0.00 2.85
3522 3642 2.433318 GACTGGGAGTGCGACTGC 60.433 66.667 0.00 0.00 43.20 4.40
3523 3643 2.262915 GGACTGGGAGTGCGACTG 59.737 66.667 0.00 0.00 0.00 3.51
3526 3646 2.997315 CTGGGACTGGGAGTGCGA 60.997 66.667 0.00 0.00 37.44 5.10
3527 3647 4.767255 GCTGGGACTGGGAGTGCG 62.767 72.222 0.00 0.00 37.44 5.34
3708 3881 2.039418 TCGATTACATGCCTGCCTACT 58.961 47.619 0.00 0.00 0.00 2.57
3759 3936 6.729569 ACCTAACATAAGAGGTAAACCAGTCT 59.270 38.462 1.26 0.00 44.51 3.24
3760 3937 6.817140 CACCTAACATAAGAGGTAAACCAGTC 59.183 42.308 1.26 0.00 44.54 3.51
3761 3938 6.296259 CCACCTAACATAAGAGGTAAACCAGT 60.296 42.308 1.26 0.00 44.54 4.00
3762 3939 6.113411 CCACCTAACATAAGAGGTAAACCAG 58.887 44.000 1.26 0.00 44.54 4.00
3763 3940 5.045432 CCCACCTAACATAAGAGGTAAACCA 60.045 44.000 1.26 0.00 44.54 3.67
3765 3942 4.880120 GCCCACCTAACATAAGAGGTAAAC 59.120 45.833 0.00 0.00 44.54 2.01
4066 4254 5.159399 GCACATGCAGAAAACAAAAACAT 57.841 34.783 0.00 0.00 41.59 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.