Multiple sequence alignment - TraesCS6D01G407800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G407800 chr6D 100.000 8373 0 0 1 8373 473229348 473237720 0.000000e+00 15463.0
1 TraesCS6D01G407800 chr6D 93.023 86 4 2 4186 4270 473233617 473233533 3.170000e-24 124.0
2 TraesCS6D01G407800 chr6B 94.719 3295 140 19 4267 7545 718641820 718645096 0.000000e+00 5090.0
3 TraesCS6D01G407800 chr6B 94.112 2055 90 16 531 2562 718638038 718640084 0.000000e+00 3096.0
4 TraesCS6D01G407800 chr6B 95.349 1677 69 6 2559 4232 718640154 718641824 0.000000e+00 2656.0
5 TraesCS6D01G407800 chr6B 95.534 515 8 4 6661 7175 669686596 669686097 0.000000e+00 809.0
6 TraesCS6D01G407800 chr6B 95.340 515 9 4 6661 7175 669740165 669739666 0.000000e+00 804.0
7 TraesCS6D01G407800 chr6B 87.480 615 24 20 7544 8128 718645210 718645801 0.000000e+00 660.0
8 TraesCS6D01G407800 chr6B 92.916 367 18 4 7206 7571 669686096 669685737 2.070000e-145 527.0
9 TraesCS6D01G407800 chr6B 91.826 367 21 4 7206 7571 669739665 669739307 3.490000e-138 503.0
10 TraesCS6D01G407800 chr6B 89.674 184 2 6 8196 8363 718645923 718646105 1.420000e-52 219.0
11 TraesCS6D01G407800 chr6B 95.455 66 2 1 8135 8199 718645837 718645902 4.130000e-18 104.0
12 TraesCS6D01G407800 chr6B 86.170 94 11 2 4179 4271 123500605 123500513 5.350000e-17 100.0
13 TraesCS6D01G407800 chr6A 95.366 2374 96 9 4267 6634 616758241 616755876 0.000000e+00 3762.0
14 TraesCS6D01G407800 chr6A 95.650 1678 62 8 2559 4232 616759907 616758237 0.000000e+00 2684.0
15 TraesCS6D01G407800 chr6A 95.777 1468 45 6 1107 2562 616761436 616759974 0.000000e+00 2351.0
16 TraesCS6D01G407800 chr6A 95.122 1189 45 5 6658 7833 616755883 616754695 0.000000e+00 1862.0
17 TraesCS6D01G407800 chr6A 91.096 438 21 6 651 1071 616761866 616761430 2.030000e-160 577.0
18 TraesCS6D01G407800 chr6A 85.399 363 25 17 8019 8363 616754700 616754348 1.340000e-92 351.0
19 TraesCS6D01G407800 chr6A 92.574 202 12 1 421 619 616762066 616761865 3.820000e-73 287.0
20 TraesCS6D01G407800 chr6A 87.766 188 7 10 241 421 616762316 616762138 1.100000e-48 206.0
21 TraesCS6D01G407800 chr6A 95.402 87 4 0 743 829 359560511 359560597 1.130000e-28 139.0
22 TraesCS6D01G407800 chr6A 100.000 37 0 0 11 47 616762585 616762549 1.510000e-07 69.4
23 TraesCS6D01G407800 chr6A 97.297 37 1 0 165 201 585520974 585521010 7.020000e-06 63.9
24 TraesCS6D01G407800 chr5D 84.522 2300 195 79 5421 7673 398901180 398903365 0.000000e+00 2126.0
25 TraesCS6D01G407800 chr5D 89.975 1197 100 17 2591 3778 398898337 398899522 0.000000e+00 1528.0
26 TraesCS6D01G407800 chr5D 88.949 1104 100 11 1132 2221 398896919 398898014 0.000000e+00 1343.0
27 TraesCS6D01G407800 chr5D 84.235 1072 120 18 4269 5333 398900102 398901131 0.000000e+00 998.0
28 TraesCS6D01G407800 chr5D 86.275 102 7 2 2447 2547 398898250 398898345 4.130000e-18 104.0
29 TraesCS6D01G407800 chr5B 89.623 1195 104 17 2591 3778 479194673 479195854 0.000000e+00 1502.0
30 TraesCS6D01G407800 chr5B 88.629 1240 93 28 5421 6647 479197485 479198689 0.000000e+00 1465.0
31 TraesCS6D01G407800 chr5B 89.020 1102 96 13 1136 2221 479193227 479194319 0.000000e+00 1341.0
32 TraesCS6D01G407800 chr5B 83.302 1072 120 19 4269 5333 479196417 479197436 0.000000e+00 933.0
33 TraesCS6D01G407800 chr5B 84.304 841 82 31 6843 7667 479198851 479199657 0.000000e+00 776.0
34 TraesCS6D01G407800 chr5B 87.260 416 30 10 3775 4187 479196023 479196418 3.560000e-123 453.0
35 TraesCS6D01G407800 chr5B 83.582 335 30 10 2221 2547 479194364 479194681 2.960000e-74 291.0
36 TraesCS6D01G407800 chr5B 78.442 385 57 9 681 1064 479192843 479193202 2.350000e-55 228.0
37 TraesCS6D01G407800 chr5A 88.928 1138 95 16 1102 2221 503941616 503942740 0.000000e+00 1375.0
38 TraesCS6D01G407800 chr5A 88.271 1151 80 25 5375 6513 503945796 503946903 0.000000e+00 1327.0
39 TraesCS6D01G407800 chr5A 89.864 957 73 12 2590 3540 503943107 503944045 0.000000e+00 1208.0
40 TraesCS6D01G407800 chr5A 85.815 1135 108 19 1108 2221 109302845 109303947 0.000000e+00 1155.0
41 TraesCS6D01G407800 chr5A 88.245 604 41 19 6843 7444 503947131 503947706 0.000000e+00 695.0
42 TraesCS6D01G407800 chr5A 86.509 593 73 4 4269 4861 503944703 503945288 0.000000e+00 645.0
43 TraesCS6D01G407800 chr5A 86.441 413 30 3 418 829 285342971 285343358 6.000000e-116 429.0
44 TraesCS6D01G407800 chr5A 86.856 388 43 8 3775 4157 503944265 503944649 2.160000e-115 427.0
45 TraesCS6D01G407800 chr5A 86.165 412 32 7 418 829 326896070 326896456 1.000000e-113 422.0
46 TraesCS6D01G407800 chr5A 85.606 264 16 13 165 418 326895759 326896010 3.000000e-64 257.0
47 TraesCS6D01G407800 chr5A 85.036 274 9 17 165 418 285342650 285342911 5.020000e-62 250.0
48 TraesCS6D01G407800 chr5A 77.412 425 68 8 646 1069 503941230 503941627 2.350000e-55 228.0
49 TraesCS6D01G407800 chr5A 81.567 217 28 9 7463 7672 503947695 503947906 1.450000e-37 169.0
50 TraesCS6D01G407800 chr5A 87.826 115 9 2 3620 3734 503944045 503944154 6.820000e-26 130.0
51 TraesCS6D01G407800 chr5A 86.022 93 13 0 4178 4270 446318283 446318191 5.350000e-17 100.0
52 TraesCS6D01G407800 chr1B 85.777 1132 108 18 1111 2221 674639716 674638617 0.000000e+00 1149.0
53 TraesCS6D01G407800 chr1B 86.957 276 30 4 796 1071 545451797 545452066 1.060000e-78 305.0
54 TraesCS6D01G407800 chr2A 85.159 1132 115 18 1111 2221 130176886 130175787 0.000000e+00 1110.0
55 TraesCS6D01G407800 chr2A 80.746 670 86 19 422 1071 537056716 537057362 4.540000e-132 483.0
56 TraesCS6D01G407800 chr2A 85.819 409 33 2 421 829 480822149 480821766 2.180000e-110 411.0
57 TraesCS6D01G407800 chr2A 85.214 257 14 13 178 421 480822454 480822209 8.400000e-60 243.0
58 TraesCS6D01G407800 chr2A 80.240 167 5 14 262 421 537056531 537056676 5.350000e-17 100.0
59 TraesCS6D01G407800 chr2A 97.959 49 1 0 165 213 110438446 110438398 1.500000e-12 86.1
60 TraesCS6D01G407800 chr2A 97.297 37 1 0 165 201 34216334 34216370 7.020000e-06 63.9
61 TraesCS6D01G407800 chr2B 85.071 1132 116 19 1111 2221 10670240 10671339 0.000000e+00 1105.0
62 TraesCS6D01G407800 chr2B 84.806 1132 112 21 1111 2221 390973394 390972302 0.000000e+00 1083.0
63 TraesCS6D01G407800 chr2B 80.626 671 86 18 422 1071 736737932 736737285 5.880000e-131 479.0
64 TraesCS6D01G407800 chr7B 81.222 671 82 21 422 1071 697784192 697783545 1.250000e-137 501.0
65 TraesCS6D01G407800 chr7B 79.042 167 7 11 262 421 697784377 697784232 1.160000e-13 89.8
66 TraesCS6D01G407800 chr4A 86.893 412 28 3 418 829 520591934 520592319 9.980000e-119 438.0
67 TraesCS6D01G407800 chr4A 79.285 671 93 22 422 1071 696445167 696445812 2.160000e-115 427.0
68 TraesCS6D01G407800 chr4A 83.154 279 10 16 165 418 520591608 520591874 3.930000e-53 220.0
69 TraesCS6D01G407800 chr1A 84.951 412 33 2 418 829 52664387 52664769 2.830000e-104 390.0
70 TraesCS6D01G407800 chr1A 87.121 264 12 11 165 418 52664076 52664327 6.400000e-71 279.0
71 TraesCS6D01G407800 chr1A 94.737 38 1 1 165 201 378549202 378549165 3.260000e-04 58.4
72 TraesCS6D01G407800 chr7A 96.552 87 3 0 743 829 569579032 569578946 2.440000e-30 145.0
73 TraesCS6D01G407800 chr7A 87.755 98 8 4 4179 4275 50004219 50004313 2.470000e-20 111.0
74 TraesCS6D01G407800 chr7A 86.667 90 12 0 4184 4273 138751688 138751777 5.350000e-17 100.0
75 TraesCS6D01G407800 chr3D 88.372 86 10 0 4186 4271 398703775 398703860 4.130000e-18 104.0
76 TraesCS6D01G407800 chr3D 84.694 98 13 2 4175 4271 414906114 414906210 6.920000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G407800 chr6D 473229348 473237720 8372 False 15463.000000 15463 100.000000 1 8373 1 chr6D.!!$F1 8372
1 TraesCS6D01G407800 chr6B 718638038 718646105 8067 False 1970.833333 5090 92.798167 531 8363 6 chr6B.!!$F1 7832
2 TraesCS6D01G407800 chr6B 669685737 669686596 859 True 668.000000 809 94.225000 6661 7571 2 chr6B.!!$R2 910
3 TraesCS6D01G407800 chr6B 669739307 669740165 858 True 653.500000 804 93.583000 6661 7571 2 chr6B.!!$R3 910
4 TraesCS6D01G407800 chr6A 616754348 616762585 8237 True 1349.933333 3762 93.194444 11 8363 9 chr6A.!!$R1 8352
5 TraesCS6D01G407800 chr5D 398896919 398903365 6446 False 1219.800000 2126 86.791200 1132 7673 5 chr5D.!!$F1 6541
6 TraesCS6D01G407800 chr5B 479192843 479199657 6814 False 873.625000 1502 85.520250 681 7667 8 chr5B.!!$F1 6986
7 TraesCS6D01G407800 chr5A 109302845 109303947 1102 False 1155.000000 1155 85.815000 1108 2221 1 chr5A.!!$F1 1113
8 TraesCS6D01G407800 chr5A 503941230 503947906 6676 False 689.333333 1375 86.164222 646 7672 9 chr5A.!!$F4 7026
9 TraesCS6D01G407800 chr5A 285342650 285343358 708 False 339.500000 429 85.738500 165 829 2 chr5A.!!$F2 664
10 TraesCS6D01G407800 chr5A 326895759 326896456 697 False 339.500000 422 85.885500 165 829 2 chr5A.!!$F3 664
11 TraesCS6D01G407800 chr1B 674638617 674639716 1099 True 1149.000000 1149 85.777000 1111 2221 1 chr1B.!!$R1 1110
12 TraesCS6D01G407800 chr2A 130175787 130176886 1099 True 1110.000000 1110 85.159000 1111 2221 1 chr2A.!!$R2 1110
13 TraesCS6D01G407800 chr2A 480821766 480822454 688 True 327.000000 411 85.516500 178 829 2 chr2A.!!$R3 651
14 TraesCS6D01G407800 chr2A 537056531 537057362 831 False 291.500000 483 80.493000 262 1071 2 chr2A.!!$F2 809
15 TraesCS6D01G407800 chr2B 10670240 10671339 1099 False 1105.000000 1105 85.071000 1111 2221 1 chr2B.!!$F1 1110
16 TraesCS6D01G407800 chr2B 390972302 390973394 1092 True 1083.000000 1083 84.806000 1111 2221 1 chr2B.!!$R1 1110
17 TraesCS6D01G407800 chr2B 736737285 736737932 647 True 479.000000 479 80.626000 422 1071 1 chr2B.!!$R2 649
18 TraesCS6D01G407800 chr7B 697783545 697784377 832 True 295.400000 501 80.132000 262 1071 2 chr7B.!!$R1 809
19 TraesCS6D01G407800 chr4A 696445167 696445812 645 False 427.000000 427 79.285000 422 1071 1 chr4A.!!$F1 649
20 TraesCS6D01G407800 chr4A 520591608 520592319 711 False 329.000000 438 85.023500 165 829 2 chr4A.!!$F2 664
21 TraesCS6D01G407800 chr1A 52664076 52664769 693 False 334.500000 390 86.036000 165 829 2 chr1A.!!$F1 664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 195 0.035439 AGTGGTGAAATGGGGTAGCG 60.035 55.000 0.00 0.0 0.00 4.26 F
1576 1855 0.322546 AGGTTCGAATGCCCACCTTC 60.323 55.000 0.00 0.0 36.09 3.46 F
1713 1999 1.142060 TGTGGTTTCGTGTGGAGGATT 59.858 47.619 0.00 0.0 0.00 3.01 F
2933 3442 1.688197 CCAGAACCAAATGCAACCAGT 59.312 47.619 0.00 0.0 0.00 4.00 F
3773 4292 1.470098 CCTCACGGGAATGCAGAAAAG 59.530 52.381 0.00 0.0 37.23 2.27 F
4265 4978 0.616371 TTACATTGTGGGACGGAGGG 59.384 55.000 0.00 0.0 0.00 4.30 F
4513 5229 0.998669 CATGCGCATACGTTGAGTCA 59.001 50.000 24.84 0.0 42.83 3.41 F
6008 6771 1.476085 TGCAGCCGGTTCATTTTATGG 59.524 47.619 1.90 0.0 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1939 2239 0.825840 CCACCCACAATGTTTCCCGT 60.826 55.000 0.00 0.0 0.00 5.28 R
2955 3464 1.337384 TGGCGTCATGTAGCATCCCT 61.337 55.000 14.83 0.0 34.54 4.20 R
3529 4047 2.146342 AGGTTGTGAGCATTCGTTGAG 58.854 47.619 0.00 0.0 0.00 3.02 R
4250 4963 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.0 0.00 2.71 R
5044 5807 2.089980 ACAGGCACATTCTCATGAAGC 58.910 47.619 0.00 0.0 35.44 3.86 R
5161 5924 2.175878 ACTGACCTTGACATCTGTGC 57.824 50.000 0.00 0.0 0.00 4.57 R
6216 6980 2.778299 TGTACTCACAGTTCATTGGCC 58.222 47.619 0.00 0.0 0.00 5.36 R
7944 8883 0.171455 CTCGGCAAGTACTCGCTTCT 59.829 55.000 5.65 0.0 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 3.419858 CCCCAAGGTGCTCCATCT 58.580 61.111 7.70 0.00 35.89 2.90
59 60 1.077212 CCCCAAGGTGCTCCATCTG 60.077 63.158 7.70 1.38 35.89 2.90
67 142 1.118838 GTGCTCCATCTGCTAGGTCT 58.881 55.000 0.00 0.00 0.00 3.85
88 163 4.642488 TGCCACCCGACCCCAGTA 62.642 66.667 0.00 0.00 0.00 2.74
89 164 3.782443 GCCACCCGACCCCAGTAG 61.782 72.222 0.00 0.00 0.00 2.57
90 165 2.284405 CCACCCGACCCCAGTAGT 60.284 66.667 0.00 0.00 0.00 2.73
92 167 2.284405 ACCCGACCCCAGTAGTGG 60.284 66.667 9.89 9.89 44.56 4.00
93 168 2.284405 CCCGACCCCAGTAGTGGT 60.284 66.667 15.60 0.00 43.23 4.16
105 193 3.370527 CCAGTAGTGGTGAAATGGGGTAG 60.371 52.174 8.59 0.00 39.30 3.18
107 195 0.035439 AGTGGTGAAATGGGGTAGCG 60.035 55.000 0.00 0.00 0.00 4.26
131 219 5.401376 GCGTGCTCGTAATTCTGTGATTATA 59.599 40.000 10.18 0.00 39.49 0.98
133 221 7.440281 CGTGCTCGTAATTCTGTGATTATATG 58.560 38.462 0.00 0.00 0.00 1.78
136 224 8.303876 TGCTCGTAATTCTGTGATTATATGCTA 58.696 33.333 0.00 0.00 0.00 3.49
137 225 8.802856 GCTCGTAATTCTGTGATTATATGCTAG 58.197 37.037 0.00 0.00 0.00 3.42
138 226 9.295214 CTCGTAATTCTGTGATTATATGCTAGG 57.705 37.037 0.00 0.00 0.00 3.02
139 227 8.803235 TCGTAATTCTGTGATTATATGCTAGGT 58.197 33.333 0.00 0.00 0.00 3.08
144 232 9.712305 ATTCTGTGATTATATGCTAGGTACAAC 57.288 33.333 0.00 0.00 0.00 3.32
145 233 8.245195 TCTGTGATTATATGCTAGGTACAACA 57.755 34.615 0.00 0.00 0.00 3.33
146 234 8.700973 TCTGTGATTATATGCTAGGTACAACAA 58.299 33.333 0.00 0.00 0.00 2.83
147 235 8.657074 TGTGATTATATGCTAGGTACAACAAC 57.343 34.615 0.00 0.00 0.00 3.32
148 236 8.482943 TGTGATTATATGCTAGGTACAACAACT 58.517 33.333 0.00 0.00 0.00 3.16
149 237 8.979574 GTGATTATATGCTAGGTACAACAACTC 58.020 37.037 0.00 0.00 0.00 3.01
150 238 8.148351 TGATTATATGCTAGGTACAACAACTCC 58.852 37.037 0.00 0.00 0.00 3.85
151 239 3.629142 ATGCTAGGTACAACAACTCCC 57.371 47.619 0.00 0.00 0.00 4.30
152 240 2.616524 TGCTAGGTACAACAACTCCCT 58.383 47.619 0.00 0.00 0.00 4.20
153 241 2.565834 TGCTAGGTACAACAACTCCCTC 59.434 50.000 0.00 0.00 0.00 4.30
154 242 2.093606 GCTAGGTACAACAACTCCCTCC 60.094 54.545 0.00 0.00 0.00 4.30
155 243 2.417719 AGGTACAACAACTCCCTCCT 57.582 50.000 0.00 0.00 0.00 3.69
156 244 1.978580 AGGTACAACAACTCCCTCCTG 59.021 52.381 0.00 0.00 0.00 3.86
157 245 1.610886 GGTACAACAACTCCCTCCTGC 60.611 57.143 0.00 0.00 0.00 4.85
158 246 0.690762 TACAACAACTCCCTCCTGCC 59.309 55.000 0.00 0.00 0.00 4.85
159 247 1.303643 CAACAACTCCCTCCTGCCC 60.304 63.158 0.00 0.00 0.00 5.36
160 248 2.539081 AACAACTCCCTCCTGCCCC 61.539 63.158 0.00 0.00 0.00 5.80
161 249 2.612115 CAACTCCCTCCTGCCCCT 60.612 66.667 0.00 0.00 0.00 4.79
162 250 2.612115 AACTCCCTCCTGCCCCTG 60.612 66.667 0.00 0.00 0.00 4.45
237 329 3.113260 CCTTCATGGGAACGATCCTAC 57.887 52.381 11.90 0.00 45.77 3.18
238 330 2.700897 CCTTCATGGGAACGATCCTACT 59.299 50.000 11.90 0.00 45.77 2.57
239 331 3.493350 CCTTCATGGGAACGATCCTACTG 60.493 52.174 11.90 6.97 45.77 2.74
240 332 2.747177 TCATGGGAACGATCCTACTGT 58.253 47.619 11.90 0.00 45.77 3.55
241 333 3.104512 TCATGGGAACGATCCTACTGTT 58.895 45.455 11.90 0.00 45.77 3.16
242 334 3.132289 TCATGGGAACGATCCTACTGTTC 59.868 47.826 11.90 2.77 45.77 3.18
243 335 2.531771 TGGGAACGATCCTACTGTTCA 58.468 47.619 11.90 0.00 45.77 3.18
244 336 3.104512 TGGGAACGATCCTACTGTTCAT 58.895 45.455 11.90 0.00 45.77 2.57
245 337 3.118775 TGGGAACGATCCTACTGTTCATG 60.119 47.826 11.90 0.00 45.77 3.07
246 338 2.866762 GGAACGATCCTACTGTTCATGC 59.133 50.000 4.14 0.00 42.86 4.06
247 339 2.604046 ACGATCCTACTGTTCATGCC 57.396 50.000 0.00 0.00 0.00 4.40
248 340 2.111384 ACGATCCTACTGTTCATGCCT 58.889 47.619 0.00 0.00 0.00 4.75
249 341 3.296854 ACGATCCTACTGTTCATGCCTA 58.703 45.455 0.00 0.00 0.00 3.93
250 342 3.319405 ACGATCCTACTGTTCATGCCTAG 59.681 47.826 0.00 0.00 0.00 3.02
251 343 3.658709 GATCCTACTGTTCATGCCTAGC 58.341 50.000 0.00 0.00 0.00 3.42
252 344 1.762957 TCCTACTGTTCATGCCTAGCC 59.237 52.381 0.00 0.00 0.00 3.93
296 393 2.171027 TGACTGCACTGCATCCATGATA 59.829 45.455 3.64 0.00 38.13 2.15
299 396 3.181448 ACTGCACTGCATCCATGATATCA 60.181 43.478 8.10 8.10 38.13 2.15
338 450 4.262721 CGCCTGGAGTAGAGTAGAGTAGAT 60.263 50.000 0.00 0.00 0.00 1.98
339 451 5.001232 GCCTGGAGTAGAGTAGAGTAGATG 58.999 50.000 0.00 0.00 0.00 2.90
340 452 5.001232 CCTGGAGTAGAGTAGAGTAGATGC 58.999 50.000 0.00 0.00 0.00 3.91
341 453 5.455469 CCTGGAGTAGAGTAGAGTAGATGCA 60.455 48.000 0.00 0.00 0.00 3.96
342 454 6.194285 TGGAGTAGAGTAGAGTAGATGCAT 57.806 41.667 0.00 0.00 0.00 3.96
343 455 7.317722 TGGAGTAGAGTAGAGTAGATGCATA 57.682 40.000 0.00 0.00 0.00 3.14
344 456 7.746703 TGGAGTAGAGTAGAGTAGATGCATAA 58.253 38.462 0.00 0.00 0.00 1.90
346 458 9.893634 GGAGTAGAGTAGAGTAGATGCATAATA 57.106 37.037 0.00 0.00 0.00 0.98
419 618 5.235850 TCCTTTGTATAAGCAACACCTGA 57.764 39.130 0.00 0.00 0.00 3.86
436 635 0.686789 TGACTTCTAGCAAGCAGGCA 59.313 50.000 2.37 0.00 30.82 4.75
456 663 6.207417 CAGGCAGGTGATTTTCTTTCTTTCTA 59.793 38.462 0.00 0.00 0.00 2.10
575 785 2.115595 CAGCTTCTCTTCTGCGATACG 58.884 52.381 0.00 0.00 0.00 3.06
605 815 2.361438 CCACTCGGTCCTGGATAGTTAC 59.639 54.545 0.00 0.00 0.00 2.50
612 822 4.471548 GGTCCTGGATAGTTACTCAGCTA 58.528 47.826 0.00 0.00 0.00 3.32
644 854 3.426568 GCTCAACAGCCAGCCGAC 61.427 66.667 0.00 0.00 40.14 4.79
645 855 2.743928 CTCAACAGCCAGCCGACC 60.744 66.667 0.00 0.00 0.00 4.79
646 856 3.241530 TCAACAGCCAGCCGACCT 61.242 61.111 0.00 0.00 0.00 3.85
996 1243 2.281761 CTTGCTGTCCCGTTGCCT 60.282 61.111 0.00 0.00 0.00 4.75
1361 1636 1.743772 GCGCCATCCATTGAGTACACT 60.744 52.381 0.00 0.00 0.00 3.55
1371 1647 9.653287 CATCCATTGAGTACACTTTCTTAACTA 57.347 33.333 0.00 0.00 0.00 2.24
1576 1855 0.322546 AGGTTCGAATGCCCACCTTC 60.323 55.000 0.00 0.00 36.09 3.46
1655 1936 7.546358 TGTTAATGGGTTTGCAATCTAATCAG 58.454 34.615 0.00 0.00 0.00 2.90
1702 1988 2.213499 ACTCTTCTTGCTGTGGTTTCG 58.787 47.619 0.00 0.00 0.00 3.46
1713 1999 1.142060 TGTGGTTTCGTGTGGAGGATT 59.858 47.619 0.00 0.00 0.00 3.01
1939 2239 2.093869 GGTCCACGTATTACAAGCTCCA 60.094 50.000 0.00 0.00 0.00 3.86
2004 2304 2.033448 GGTGGATTGTCGGTGCCA 59.967 61.111 0.00 0.00 0.00 4.92
2070 2370 5.189180 GGAAGACTAAATGTGCAAGGATCT 58.811 41.667 0.00 0.00 0.00 2.75
2119 2419 6.535274 CGCAAGGTAGTTTACTTAACTGTT 57.465 37.500 0.00 0.00 46.46 3.16
2233 2630 4.632153 TGCTCTGTTCCTTGACTTCTTAC 58.368 43.478 0.00 0.00 0.00 2.34
2336 2739 5.061808 CACAGTAGGTAGCGTTAATGTTCAC 59.938 44.000 0.00 0.00 0.00 3.18
2370 2773 7.739825 ACTTATGAACCATGTGATGCTATAGT 58.260 34.615 0.84 0.00 0.00 2.12
2371 2774 8.870116 ACTTATGAACCATGTGATGCTATAGTA 58.130 33.333 0.84 0.00 0.00 1.82
2372 2775 9.881649 CTTATGAACCATGTGATGCTATAGTAT 57.118 33.333 2.61 2.61 0.00 2.12
2384 2787 9.809096 GTGATGCTATAGTATAGTGTATTGCAT 57.191 33.333 16.76 12.82 45.03 3.96
2460 2865 4.521256 TGTACAATGGGAGCCAACTTTTAC 59.479 41.667 0.00 0.00 36.95 2.01
2465 2877 6.268847 ACAATGGGAGCCAACTTTTACAATTA 59.731 34.615 0.00 0.00 36.95 1.40
2516 2936 6.351541 CCAACATTGATGGAATTCCTGTCATT 60.352 38.462 24.73 19.30 40.56 2.57
2569 3064 5.106515 GGCTGCTGGAAACTTTTCTTAGTAG 60.107 44.000 0.00 14.26 37.26 2.57
2883 3392 5.919141 GCAACTGATGAATATGATTGGAAGC 59.081 40.000 0.00 0.00 0.00 3.86
2933 3442 1.688197 CCAGAACCAAATGCAACCAGT 59.312 47.619 0.00 0.00 0.00 4.00
2944 3453 7.015195 ACCAAATGCAACCAGTAAATAGTTCTT 59.985 33.333 0.00 0.00 0.00 2.52
3077 3586 8.153550 ACAATATGGTAAAATTGCTGGAAAACA 58.846 29.630 0.00 0.00 36.72 2.83
3121 3630 2.954989 GGAGGATTCTTTGCCAATCTCC 59.045 50.000 0.00 0.00 31.82 3.71
3266 3775 8.045176 ACAGTTGAATTAATTCTAGAACCTGC 57.955 34.615 24.77 7.61 37.67 4.85
3406 3923 2.288273 GCCCCGCTACTCTGTACTTATG 60.288 54.545 0.00 0.00 0.00 1.90
3471 3988 8.764524 ACTCCGTCATAAAATATTCTATCTGC 57.235 34.615 0.00 0.00 0.00 4.26
3473 3990 6.811665 TCCGTCATAAAATATTCTATCTGCGG 59.188 38.462 8.04 8.04 0.00 5.69
3490 4008 3.752665 TGCGGTAAAGTCCATTGGTTTA 58.247 40.909 1.86 0.00 0.00 2.01
3512 4030 9.765795 GTTTATTAGTCCTGTAGTATGAATGCT 57.234 33.333 0.00 0.00 0.00 3.79
3529 4047 3.325293 TGCTGTGATCTTCTCCTCAAC 57.675 47.619 0.00 0.00 0.00 3.18
3542 4060 2.670414 CTCCTCAACTCAACGAATGCTC 59.330 50.000 0.00 0.00 0.00 4.26
3545 4063 2.802247 CTCAACTCAACGAATGCTCACA 59.198 45.455 0.00 0.00 0.00 3.58
3773 4292 1.470098 CCTCACGGGAATGCAGAAAAG 59.530 52.381 0.00 0.00 37.23 2.27
3933 4627 9.657728 GATGCCTATAGTAATAAGTACCCCTAT 57.342 37.037 0.00 0.00 32.58 2.57
3957 4669 4.355543 TTTGCGAGAAATGGAAGTATGC 57.644 40.909 0.00 0.00 0.00 3.14
4057 4770 7.707624 AGATAATCAATTTGTCTTTCCTGCA 57.292 32.000 0.00 0.00 32.36 4.41
4075 4788 5.038033 CCTGCAAGAACTCGTATAGAGAAC 58.962 45.833 1.83 0.00 43.44 3.01
4194 4907 7.618019 ACATGAGCTAAATATTACTCCCTCA 57.382 36.000 0.00 7.98 33.26 3.86
4205 4918 2.814805 ACTCCCTCAATCCCACAATG 57.185 50.000 0.00 0.00 0.00 2.82
4228 4941 7.097342 TGTAAGACGTTTTTAGAAGCTAACG 57.903 36.000 14.01 14.01 46.26 3.18
4246 4959 6.924629 CTAACGTAGCTTCTAAAAACGTCT 57.075 37.500 8.85 3.44 45.19 4.18
4247 4960 7.330720 CTAACGTAGCTTCTAAAAACGTCTT 57.669 36.000 8.85 0.00 45.19 3.01
4248 4961 8.440021 CTAACGTAGCTTCTAAAAACGTCTTA 57.560 34.615 8.85 0.00 45.19 2.10
4249 4962 6.681571 ACGTAGCTTCTAAAAACGTCTTAC 57.318 37.500 2.86 0.00 42.62 2.34
4250 4963 6.208644 ACGTAGCTTCTAAAAACGTCTTACA 58.791 36.000 2.86 0.00 42.62 2.41
4251 4964 6.865205 ACGTAGCTTCTAAAAACGTCTTACAT 59.135 34.615 2.86 0.00 42.62 2.29
4252 4965 7.383300 ACGTAGCTTCTAAAAACGTCTTACATT 59.617 33.333 2.86 0.00 42.62 2.71
4253 4966 7.682865 CGTAGCTTCTAAAAACGTCTTACATTG 59.317 37.037 0.00 0.00 0.00 2.82
4254 4967 7.492352 AGCTTCTAAAAACGTCTTACATTGT 57.508 32.000 0.00 0.00 0.00 2.71
4255 4968 7.352739 AGCTTCTAAAAACGTCTTACATTGTG 58.647 34.615 0.00 0.00 0.00 3.33
4256 4969 6.577427 GCTTCTAAAAACGTCTTACATTGTGG 59.423 38.462 0.00 0.00 0.00 4.17
4257 4970 6.548441 TCTAAAAACGTCTTACATTGTGGG 57.452 37.500 0.00 0.00 0.00 4.61
4258 4971 6.289834 TCTAAAAACGTCTTACATTGTGGGA 58.710 36.000 0.00 0.00 0.00 4.37
4259 4972 4.823790 AAAACGTCTTACATTGTGGGAC 57.176 40.909 0.00 6.72 0.00 4.46
4261 4974 1.355971 CGTCTTACATTGTGGGACGG 58.644 55.000 24.96 14.26 43.69 4.79
4262 4975 1.067425 CGTCTTACATTGTGGGACGGA 60.067 52.381 24.96 5.37 43.69 4.69
4263 4976 2.618053 GTCTTACATTGTGGGACGGAG 58.382 52.381 0.00 0.00 0.00 4.63
4264 4977 1.553248 TCTTACATTGTGGGACGGAGG 59.447 52.381 0.00 0.00 0.00 4.30
4265 4978 0.616371 TTACATTGTGGGACGGAGGG 59.384 55.000 0.00 0.00 0.00 4.30
4278 4991 3.083293 GACGGAGGGAGTAGGTATGATC 58.917 54.545 0.00 0.00 0.00 2.92
4288 5001 5.717178 GGAGTAGGTATGATCTGAGGCATAA 59.283 44.000 0.00 0.00 0.00 1.90
4305 5018 2.435372 TAACAGCTAAGCCATTGGGG 57.565 50.000 4.53 0.00 40.85 4.96
4400 5113 4.191804 ACTATGAGCCTCATGACCTACT 57.808 45.455 17.46 0.00 37.70 2.57
4420 5136 3.782523 ACTGTGTGGACCAATATGGATCT 59.217 43.478 2.85 0.00 40.96 2.75
4465 5181 6.851222 TTAGCTGCAGCATTTTATAGAGAC 57.149 37.500 38.24 5.78 45.16 3.36
4513 5229 0.998669 CATGCGCATACGTTGAGTCA 59.001 50.000 24.84 0.00 42.83 3.41
4709 5425 8.475639 TGAACCATCTTCCTACTAAATGTAGTC 58.524 37.037 0.00 0.00 45.36 2.59
4738 5454 2.620251 TCTGGTCAACTCTGGTGTTG 57.380 50.000 8.63 8.63 46.09 3.33
4812 5528 4.829872 TGGACCTATTATTTCCACGTGT 57.170 40.909 15.65 0.00 34.35 4.49
4825 5541 1.501169 CACGTGTGACATGCTCAAGA 58.499 50.000 7.58 0.00 0.00 3.02
4953 5716 9.490379 CGCTACCTTAATACATTCCTCTTTTAT 57.510 33.333 0.00 0.00 0.00 1.40
5044 5807 4.641396 TGGAGTTACATCACAAGGAACAG 58.359 43.478 0.00 0.00 0.00 3.16
5050 5813 3.759581 ACATCACAAGGAACAGCTTCAT 58.240 40.909 0.00 0.00 0.00 2.57
5059 5822 4.008330 AGGAACAGCTTCATGAGAATGTG 58.992 43.478 8.87 1.64 32.31 3.21
5076 5839 2.266070 TGCCTGTAATGCAAGCACC 58.734 52.632 0.00 0.00 39.41 5.01
5127 5890 4.152647 ACTTTGAATCCTTGTTTCTCCCC 58.847 43.478 0.00 0.00 0.00 4.81
5161 5924 8.720909 TTATTTTGACATGTTATGAACACGTG 57.279 30.769 15.48 15.48 45.50 4.49
5201 5964 6.839657 TCAGTTGGGTTTAATTTGGGAAGTAA 59.160 34.615 0.00 0.00 0.00 2.24
5202 5965 7.511028 TCAGTTGGGTTTAATTTGGGAAGTAAT 59.489 33.333 0.00 0.00 0.00 1.89
5313 6076 3.421919 TCAACATCTCCTGCATTGTCA 57.578 42.857 0.00 0.00 0.00 3.58
5326 6089 3.692593 TGCATTGTCATCATGGTTCTGAG 59.307 43.478 0.00 0.00 0.00 3.35
5519 6282 5.385509 ACTCTCAGAGTCAAACTTCTAGC 57.614 43.478 0.00 0.00 38.71 3.42
6008 6771 1.476085 TGCAGCCGGTTCATTTTATGG 59.524 47.619 1.90 0.00 0.00 2.74
6407 7173 7.715249 TGTCCTGATCAAAGGTATAATGCTAAC 59.285 37.037 0.00 0.00 38.58 2.34
6591 7369 4.314740 TGTTCCATTTTCGTTTTCCTGG 57.685 40.909 0.00 0.00 0.00 4.45
6592 7370 3.702045 TGTTCCATTTTCGTTTTCCTGGT 59.298 39.130 0.00 0.00 0.00 4.00
6758 7537 6.662755 TGCTATCACATGTCTTCCCTAAAAT 58.337 36.000 0.00 0.00 0.00 1.82
6767 7547 8.903820 ACATGTCTTCCCTAAAATTATAGCAAC 58.096 33.333 0.00 0.00 0.00 4.17
7110 7909 7.361457 GCATTGCATATGATAGTTGAGCATGTA 60.361 37.037 6.97 0.00 34.26 2.29
7203 8002 4.142182 CGCATCCCAAATTGTTAGGTGAAT 60.142 41.667 0.00 0.00 0.00 2.57
7528 8337 4.322650 GGCCATTGTAGGAAAGAAAATGCA 60.323 41.667 0.00 0.00 0.00 3.96
7647 8581 0.590195 CTGCTGTGCTTGGTTCTCAC 59.410 55.000 0.00 0.00 0.00 3.51
7648 8582 1.159713 TGCTGTGCTTGGTTCTCACG 61.160 55.000 0.00 0.00 33.69 4.35
7676 8611 6.927933 AAGAAAATATGTTAACGTTGCAGC 57.072 33.333 11.99 0.00 0.00 5.25
7694 8629 2.108168 AGCAGCGGTAATCCACTTCTA 58.892 47.619 0.00 0.00 0.00 2.10
7787 8726 6.183360 GCTTTCTTTTGAGAAAACTGGGTACT 60.183 38.462 3.52 0.00 37.35 2.73
7839 8778 8.709386 AATATAGTTAAACAGCACTCTGACTG 57.291 34.615 0.00 0.00 42.95 3.51
7840 8779 4.672587 AGTTAAACAGCACTCTGACTGA 57.327 40.909 0.00 0.00 42.95 3.41
7857 8796 8.718102 TCTGACTGAGTTATTTACTTATTGGC 57.282 34.615 0.00 0.00 37.17 4.52
7858 8797 8.540388 TCTGACTGAGTTATTTACTTATTGGCT 58.460 33.333 0.00 0.00 37.17 4.75
7859 8798 9.817809 CTGACTGAGTTATTTACTTATTGGCTA 57.182 33.333 0.00 0.00 37.17 3.93
7880 8819 7.751768 GCTATTGTAGCCAGGAAGATTTATT 57.248 36.000 0.00 0.00 45.95 1.40
7881 8820 8.171164 GCTATTGTAGCCAGGAAGATTTATTT 57.829 34.615 0.00 0.00 45.95 1.40
7882 8821 9.284968 GCTATTGTAGCCAGGAAGATTTATTTA 57.715 33.333 0.00 0.00 45.95 1.40
7887 8826 9.920946 TGTAGCCAGGAAGATTTATTTATTTCT 57.079 29.630 0.00 0.00 0.00 2.52
7890 8829 9.259832 AGCCAGGAAGATTTATTTATTTCTTGT 57.740 29.630 0.00 0.00 0.00 3.16
7891 8830 9.521503 GCCAGGAAGATTTATTTATTTCTTGTC 57.478 33.333 0.00 0.00 0.00 3.18
7892 8831 9.722056 CCAGGAAGATTTATTTATTTCTTGTCG 57.278 33.333 0.00 0.00 0.00 4.35
7924 8863 6.935741 AAACTTGACACATAAACAGTAGCA 57.064 33.333 0.00 0.00 0.00 3.49
7925 8864 5.924475 ACTTGACACATAAACAGTAGCAC 57.076 39.130 0.00 0.00 0.00 4.40
7926 8865 4.755123 ACTTGACACATAAACAGTAGCACC 59.245 41.667 0.00 0.00 0.00 5.01
7927 8866 4.344359 TGACACATAAACAGTAGCACCA 57.656 40.909 0.00 0.00 0.00 4.17
7928 8867 4.314961 TGACACATAAACAGTAGCACCAG 58.685 43.478 0.00 0.00 0.00 4.00
7929 8868 3.674997 ACACATAAACAGTAGCACCAGG 58.325 45.455 0.00 0.00 0.00 4.45
7930 8869 3.009723 CACATAAACAGTAGCACCAGGG 58.990 50.000 0.00 0.00 0.00 4.45
7931 8870 2.017049 CATAAACAGTAGCACCAGGGC 58.983 52.381 0.00 0.00 0.00 5.19
7932 8871 1.060729 TAAACAGTAGCACCAGGGCA 58.939 50.000 0.00 0.00 35.83 5.36
7933 8872 0.405585 AAACAGTAGCACCAGGGCAT 59.594 50.000 0.00 0.00 35.83 4.40
7934 8873 0.405585 AACAGTAGCACCAGGGCATT 59.594 50.000 0.00 0.00 35.83 3.56
7935 8874 0.405585 ACAGTAGCACCAGGGCATTT 59.594 50.000 0.00 0.00 35.83 2.32
7936 8875 1.633432 ACAGTAGCACCAGGGCATTTA 59.367 47.619 0.00 0.00 35.83 1.40
7937 8876 2.242196 ACAGTAGCACCAGGGCATTTAT 59.758 45.455 0.00 0.00 35.83 1.40
7938 8877 3.290710 CAGTAGCACCAGGGCATTTATT 58.709 45.455 0.00 0.00 35.83 1.40
7939 8878 3.701040 CAGTAGCACCAGGGCATTTATTT 59.299 43.478 0.00 0.00 35.83 1.40
7940 8879 4.887071 CAGTAGCACCAGGGCATTTATTTA 59.113 41.667 0.00 0.00 35.83 1.40
7941 8880 5.536161 CAGTAGCACCAGGGCATTTATTTAT 59.464 40.000 0.00 0.00 35.83 1.40
7942 8881 6.040842 CAGTAGCACCAGGGCATTTATTTATT 59.959 38.462 0.00 0.00 35.83 1.40
7943 8882 5.955961 AGCACCAGGGCATTTATTTATTT 57.044 34.783 0.00 0.00 35.83 1.40
7944 8883 7.782644 AGTAGCACCAGGGCATTTATTTATTTA 59.217 33.333 0.00 0.00 35.83 1.40
7945 8884 7.054491 AGCACCAGGGCATTTATTTATTTAG 57.946 36.000 0.00 0.00 35.83 1.85
7946 8885 6.838612 AGCACCAGGGCATTTATTTATTTAGA 59.161 34.615 0.00 0.00 35.83 2.10
7947 8886 7.344352 AGCACCAGGGCATTTATTTATTTAGAA 59.656 33.333 0.00 0.00 35.83 2.10
7948 8887 7.653311 GCACCAGGGCATTTATTTATTTAGAAG 59.347 37.037 0.00 0.00 0.00 2.85
7949 8888 7.653311 CACCAGGGCATTTATTTATTTAGAAGC 59.347 37.037 0.00 0.00 0.00 3.86
7950 8889 6.863126 CCAGGGCATTTATTTATTTAGAAGCG 59.137 38.462 0.00 0.00 0.00 4.68
7951 8890 7.255451 CCAGGGCATTTATTTATTTAGAAGCGA 60.255 37.037 0.00 0.00 0.00 4.93
7952 8891 7.805071 CAGGGCATTTATTTATTTAGAAGCGAG 59.195 37.037 0.00 0.00 0.00 5.03
7953 8892 7.502561 AGGGCATTTATTTATTTAGAAGCGAGT 59.497 33.333 0.00 0.00 0.00 4.18
7954 8893 8.780249 GGGCATTTATTTATTTAGAAGCGAGTA 58.220 33.333 0.00 0.00 0.00 2.59
7955 8894 9.595357 GGCATTTATTTATTTAGAAGCGAGTAC 57.405 33.333 0.00 0.00 0.00 2.73
7960 8899 6.657836 TTTATTTAGAAGCGAGTACTTGCC 57.342 37.500 28.07 15.80 40.86 4.52
7961 8900 2.273370 TTAGAAGCGAGTACTTGCCG 57.727 50.000 28.07 14.06 40.86 5.69
7962 8901 1.456296 TAGAAGCGAGTACTTGCCGA 58.544 50.000 28.07 10.22 40.86 5.54
7963 8902 0.171455 AGAAGCGAGTACTTGCCGAG 59.829 55.000 28.07 3.72 40.86 4.63
7964 8903 0.802607 GAAGCGAGTACTTGCCGAGG 60.803 60.000 28.07 0.06 40.86 4.63
7965 8904 2.837371 AAGCGAGTACTTGCCGAGGC 62.837 60.000 28.07 7.26 40.86 4.70
7966 8905 2.885861 CGAGTACTTGCCGAGGCT 59.114 61.111 15.75 0.00 42.51 4.58
7967 8906 1.517257 CGAGTACTTGCCGAGGCTG 60.517 63.158 15.75 10.40 42.51 4.85
7968 8907 1.153549 GAGTACTTGCCGAGGCTGG 60.154 63.158 15.75 10.02 42.51 4.85
7969 8908 2.125106 GTACTTGCCGAGGCTGGG 60.125 66.667 11.72 11.72 42.51 4.45
7978 8917 2.815647 GAGGCTGGGCTTCGAACG 60.816 66.667 0.00 0.00 0.00 3.95
7979 8918 3.591254 GAGGCTGGGCTTCGAACGT 62.591 63.158 0.00 0.00 0.00 3.99
7980 8919 3.423154 GGCTGGGCTTCGAACGTG 61.423 66.667 0.00 0.00 0.00 4.49
7981 8920 3.423154 GCTGGGCTTCGAACGTGG 61.423 66.667 0.00 0.00 0.00 4.94
7982 8921 2.742372 CTGGGCTTCGAACGTGGG 60.742 66.667 0.00 0.00 0.00 4.61
7983 8922 3.530910 CTGGGCTTCGAACGTGGGT 62.531 63.158 0.00 0.00 0.00 4.51
7984 8923 3.047877 GGGCTTCGAACGTGGGTG 61.048 66.667 0.00 0.00 0.00 4.61
7985 8924 3.047877 GGCTTCGAACGTGGGTGG 61.048 66.667 0.00 0.00 0.00 4.61
7986 8925 3.047877 GCTTCGAACGTGGGTGGG 61.048 66.667 0.00 0.00 0.00 4.61
7987 8926 3.047877 CTTCGAACGTGGGTGGGC 61.048 66.667 0.00 0.00 0.00 5.36
7988 8927 4.973055 TTCGAACGTGGGTGGGCG 62.973 66.667 0.00 0.00 0.00 6.13
8005 8944 2.785258 GAGCGGTCGATTTGTGCC 59.215 61.111 0.00 0.00 0.00 5.01
8006 8945 3.083600 GAGCGGTCGATTTGTGCCG 62.084 63.158 0.00 5.59 46.17 5.69
8008 8947 4.160635 CGGTCGATTTGTGCCGCC 62.161 66.667 0.00 0.00 37.69 6.13
8009 8948 3.053291 GGTCGATTTGTGCCGCCA 61.053 61.111 0.00 0.00 0.00 5.69
8010 8949 2.480555 GTCGATTTGTGCCGCCAG 59.519 61.111 0.00 0.00 0.00 4.85
8011 8950 3.430862 TCGATTTGTGCCGCCAGC 61.431 61.111 0.00 0.00 44.14 4.85
8012 8951 4.481112 CGATTTGTGCCGCCAGCC 62.481 66.667 0.00 0.00 42.71 4.85
8013 8952 3.372730 GATTTGTGCCGCCAGCCA 61.373 61.111 0.00 0.00 42.71 4.75
8014 8953 2.916703 ATTTGTGCCGCCAGCCAA 60.917 55.556 0.00 0.00 42.71 4.52
8015 8954 3.225069 ATTTGTGCCGCCAGCCAAC 62.225 57.895 0.00 0.00 42.71 3.77
8016 8955 4.892965 TTGTGCCGCCAGCCAACT 62.893 61.111 0.00 0.00 42.71 3.16
8063 9198 9.369904 GGGAAAGATAGTATGTTAACGTTGTAA 57.630 33.333 11.99 0.00 0.00 2.41
8128 9264 7.708322 TGTTGCTTTTATGCACTTGACAATTAA 59.292 29.630 0.00 0.00 43.20 1.40
8130 9266 8.464770 TGCTTTTATGCACTTGACAATTAATC 57.535 30.769 0.00 0.00 38.12 1.75
8131 9267 7.545265 TGCTTTTATGCACTTGACAATTAATCC 59.455 33.333 0.00 0.00 38.12 3.01
8132 9268 7.010460 GCTTTTATGCACTTGACAATTAATCCC 59.990 37.037 0.00 0.00 0.00 3.85
8188 9354 2.318908 TGGCAGAAGCAAATGTTTCCT 58.681 42.857 6.40 0.00 44.61 3.36
8197 9388 7.869429 CAGAAGCAAATGTTTCCTCTTATGTTT 59.131 33.333 6.40 0.00 36.14 2.83
8331 9533 8.948631 TGTAGTGAATGAATGAGGAAAGTATC 57.051 34.615 0.00 0.00 0.00 2.24
8363 9570 1.214062 CGATATGCGGAGAGGAGGC 59.786 63.158 0.00 0.00 36.03 4.70
8364 9571 1.247419 CGATATGCGGAGAGGAGGCT 61.247 60.000 0.00 0.00 36.03 4.58
8365 9572 1.840737 GATATGCGGAGAGGAGGCTA 58.159 55.000 0.00 0.00 0.00 3.93
8366 9573 1.474879 GATATGCGGAGAGGAGGCTAC 59.525 57.143 0.00 0.00 0.00 3.58
8367 9574 0.185175 TATGCGGAGAGGAGGCTACA 59.815 55.000 0.00 0.00 0.00 2.74
8368 9575 1.112315 ATGCGGAGAGGAGGCTACAG 61.112 60.000 0.00 0.00 0.00 2.74
8369 9576 3.124686 CGGAGAGGAGGCTACAGC 58.875 66.667 0.00 0.00 41.14 4.40
8370 9577 1.754621 CGGAGAGGAGGCTACAGCA 60.755 63.158 0.00 0.00 44.36 4.41
8371 9578 1.733402 CGGAGAGGAGGCTACAGCAG 61.733 65.000 0.00 0.00 44.36 4.24
8372 9579 1.398958 GGAGAGGAGGCTACAGCAGG 61.399 65.000 0.00 0.00 44.36 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 0.105778 GACCTAGCAGATGGAGCACC 59.894 60.000 0.00 0.00 0.00 5.01
48 49 1.118838 AGACCTAGCAGATGGAGCAC 58.881 55.000 0.00 0.00 0.00 4.40
49 50 2.591923 CTAGACCTAGCAGATGGAGCA 58.408 52.381 0.00 0.00 0.00 4.26
84 159 2.879103 ACCCCATTTCACCACTACTG 57.121 50.000 0.00 0.00 0.00 2.74
86 161 2.640184 GCTACCCCATTTCACCACTAC 58.360 52.381 0.00 0.00 0.00 2.73
87 162 1.208535 CGCTACCCCATTTCACCACTA 59.791 52.381 0.00 0.00 0.00 2.74
88 163 0.035439 CGCTACCCCATTTCACCACT 60.035 55.000 0.00 0.00 0.00 4.00
89 164 1.654023 GCGCTACCCCATTTCACCAC 61.654 60.000 0.00 0.00 0.00 4.16
90 165 1.377987 GCGCTACCCCATTTCACCA 60.378 57.895 0.00 0.00 0.00 4.17
92 167 1.743995 ACGCGCTACCCCATTTCAC 60.744 57.895 5.73 0.00 0.00 3.18
93 168 1.743623 CACGCGCTACCCCATTTCA 60.744 57.895 5.73 0.00 0.00 2.69
105 193 1.013323 CAGAATTACGAGCACGCGC 60.013 57.895 5.73 0.00 43.96 6.86
107 195 1.346365 TCACAGAATTACGAGCACGC 58.654 50.000 2.62 0.00 43.96 5.34
114 202 8.988064 ACCTAGCATATAATCACAGAATTACG 57.012 34.615 0.00 0.00 0.00 3.18
131 219 3.182152 AGGGAGTTGTTGTACCTAGCAT 58.818 45.455 0.00 0.00 0.00 3.79
133 221 2.093606 GGAGGGAGTTGTTGTACCTAGC 60.094 54.545 0.00 0.00 0.00 3.42
136 224 1.978580 CAGGAGGGAGTTGTTGTACCT 59.021 52.381 0.00 0.00 0.00 3.08
137 225 1.610886 GCAGGAGGGAGTTGTTGTACC 60.611 57.143 0.00 0.00 0.00 3.34
138 226 1.610886 GGCAGGAGGGAGTTGTTGTAC 60.611 57.143 0.00 0.00 0.00 2.90
139 227 0.690762 GGCAGGAGGGAGTTGTTGTA 59.309 55.000 0.00 0.00 0.00 2.41
140 228 1.456287 GGCAGGAGGGAGTTGTTGT 59.544 57.895 0.00 0.00 0.00 3.32
141 229 1.303643 GGGCAGGAGGGAGTTGTTG 60.304 63.158 0.00 0.00 0.00 3.33
142 230 2.539081 GGGGCAGGAGGGAGTTGTT 61.539 63.158 0.00 0.00 0.00 2.83
143 231 2.936032 GGGGCAGGAGGGAGTTGT 60.936 66.667 0.00 0.00 0.00 3.32
144 232 2.612115 AGGGGCAGGAGGGAGTTG 60.612 66.667 0.00 0.00 0.00 3.16
145 233 2.612115 CAGGGGCAGGAGGGAGTT 60.612 66.667 0.00 0.00 0.00 3.01
160 248 9.282247 GATTTGCATCTAATAAATAATCCGCAG 57.718 33.333 0.00 0.00 0.00 5.18
161 249 9.013229 AGATTTGCATCTAATAAATAATCCGCA 57.987 29.630 0.00 0.00 38.06 5.69
162 250 9.282247 CAGATTTGCATCTAATAAATAATCCGC 57.718 33.333 0.00 0.00 37.71 5.54
169 257 8.133627 GCACTGACAGATTTGCATCTAATAAAT 58.866 33.333 10.08 0.00 37.71 1.40
233 325 1.202698 GGGCTAGGCATGAACAGTAGG 60.203 57.143 19.14 0.00 0.00 3.18
235 327 1.578897 TGGGCTAGGCATGAACAGTA 58.421 50.000 19.14 0.00 0.00 2.74
236 328 0.698238 TTGGGCTAGGCATGAACAGT 59.302 50.000 19.14 0.00 0.00 3.55
237 329 1.838112 TTTGGGCTAGGCATGAACAG 58.162 50.000 19.14 0.00 0.00 3.16
238 330 2.300956 TTTTGGGCTAGGCATGAACA 57.699 45.000 19.14 3.23 0.00 3.18
239 331 3.195396 TCAATTTTGGGCTAGGCATGAAC 59.805 43.478 19.14 0.27 0.00 3.18
240 332 3.195396 GTCAATTTTGGGCTAGGCATGAA 59.805 43.478 19.14 9.06 0.00 2.57
241 333 2.760092 GTCAATTTTGGGCTAGGCATGA 59.240 45.455 19.14 8.94 0.00 3.07
242 334 2.762327 AGTCAATTTTGGGCTAGGCATG 59.238 45.455 19.14 6.83 0.00 4.06
243 335 3.105959 AGTCAATTTTGGGCTAGGCAT 57.894 42.857 19.14 0.00 0.00 4.40
244 336 2.603075 AGTCAATTTTGGGCTAGGCA 57.397 45.000 19.14 1.31 0.00 4.75
245 337 3.961480 AAAGTCAATTTTGGGCTAGGC 57.039 42.857 8.00 8.00 0.00 3.93
246 338 6.350194 GGAAGTAAAGTCAATTTTGGGCTAGG 60.350 42.308 0.00 0.00 32.01 3.02
247 339 6.208599 TGGAAGTAAAGTCAATTTTGGGCTAG 59.791 38.462 0.00 0.00 32.01 3.42
248 340 6.071984 TGGAAGTAAAGTCAATTTTGGGCTA 58.928 36.000 0.00 0.00 32.01 3.93
249 341 4.898861 TGGAAGTAAAGTCAATTTTGGGCT 59.101 37.500 0.00 0.00 32.01 5.19
250 342 5.208463 TGGAAGTAAAGTCAATTTTGGGC 57.792 39.130 0.00 0.00 32.01 5.36
251 343 7.930865 TCAAATGGAAGTAAAGTCAATTTTGGG 59.069 33.333 0.00 0.00 28.03 4.12
252 344 8.764287 GTCAAATGGAAGTAAAGTCAATTTTGG 58.236 33.333 0.00 0.00 28.03 3.28
296 393 3.684788 GGCGACAGTAACAAACAGATGAT 59.315 43.478 0.00 0.00 0.00 2.45
299 396 3.067106 CAGGCGACAGTAACAAACAGAT 58.933 45.455 0.00 0.00 0.00 2.90
338 450 6.118852 TGCCGCTGGATATTAATATTATGCA 58.881 36.000 9.33 9.62 0.00 3.96
339 451 6.293626 CCTGCCGCTGGATATTAATATTATGC 60.294 42.308 10.72 11.66 0.00 3.14
340 452 6.293626 GCCTGCCGCTGGATATTAATATTATG 60.294 42.308 19.78 4.37 0.00 1.90
341 453 5.765182 GCCTGCCGCTGGATATTAATATTAT 59.235 40.000 19.78 0.00 0.00 1.28
342 454 5.123227 GCCTGCCGCTGGATATTAATATTA 58.877 41.667 19.78 2.12 0.00 0.98
343 455 3.947834 GCCTGCCGCTGGATATTAATATT 59.052 43.478 19.78 0.00 0.00 1.28
344 456 3.054434 TGCCTGCCGCTGGATATTAATAT 60.054 43.478 19.78 7.72 38.78 1.28
346 458 1.073763 TGCCTGCCGCTGGATATTAAT 59.926 47.619 19.78 0.00 38.78 1.40
347 459 0.472044 TGCCTGCCGCTGGATATTAA 59.528 50.000 19.78 0.00 38.78 1.40
350 471 2.429058 CTGCCTGCCGCTGGATAT 59.571 61.111 19.78 0.00 38.78 1.63
419 618 0.035630 CCTGCCTGCTTGCTAGAAGT 60.036 55.000 2.29 0.00 0.00 3.01
456 663 4.740902 AGCTCTGGTTCAGGGTTTTATTT 58.259 39.130 0.00 0.00 33.88 1.40
551 761 1.018226 CGCAGAAGAGAAGCTGGTGG 61.018 60.000 0.00 0.00 32.83 4.61
605 815 2.551459 AGCAAAGCAAACACTAGCTGAG 59.449 45.455 0.00 0.00 41.70 3.35
612 822 1.105457 TGAGCAGCAAAGCAAACACT 58.895 45.000 0.00 0.00 36.85 3.55
640 850 1.028905 TGAAAACAAAGGCAGGTCGG 58.971 50.000 0.00 0.00 0.00 4.79
641 851 2.857748 GTTTGAAAACAAAGGCAGGTCG 59.142 45.455 1.05 0.00 38.74 4.79
644 854 4.122143 TGAGTTTGAAAACAAAGGCAGG 57.878 40.909 8.53 0.00 41.30 4.85
645 855 4.033243 GCTTGAGTTTGAAAACAAAGGCAG 59.967 41.667 16.59 4.52 41.30 4.85
646 856 3.932089 GCTTGAGTTTGAAAACAAAGGCA 59.068 39.130 16.59 0.00 41.30 4.75
648 858 5.170748 AGTGCTTGAGTTTGAAAACAAAGG 58.829 37.500 16.59 5.24 41.30 3.11
649 859 6.401367 CCAAGTGCTTGAGTTTGAAAACAAAG 60.401 38.462 12.99 11.26 42.93 2.77
996 1243 1.153647 CAGCAAGCCGGACATCGTA 60.154 57.895 5.05 0.00 37.11 3.43
1302 1577 7.591795 CACTAACCGAGCTAGTGTATGAATTAG 59.408 40.741 5.56 0.00 40.84 1.73
1371 1647 6.993902 ACCTGAAAAATGCAGAAAATGACAAT 59.006 30.769 0.00 0.00 35.39 2.71
1576 1855 1.302383 TAATGCCGCAAACCTCCACG 61.302 55.000 0.00 0.00 0.00 4.94
1655 1936 8.027440 TGTCATAATTAAGCCAACAAAATTGC 57.973 30.769 0.00 0.00 0.00 3.56
1702 1988 8.281212 ACAGTAAAAATCATAATCCTCCACAC 57.719 34.615 0.00 0.00 0.00 3.82
1713 1999 9.787435 AACCACAGTAAGACAGTAAAAATCATA 57.213 29.630 0.00 0.00 0.00 2.15
1939 2239 0.825840 CCACCCACAATGTTTCCCGT 60.826 55.000 0.00 0.00 0.00 5.28
2004 2304 3.990318 TCGATGCGTGATGAGATACTT 57.010 42.857 0.00 0.00 0.00 2.24
2070 2370 4.524802 AAGGCCATTCATCATCCTGTTA 57.475 40.909 5.01 0.00 0.00 2.41
2274 2673 9.793259 GAAGGTCCAATGAAACCTATATCATAA 57.207 33.333 7.54 0.00 45.21 1.90
2372 2775 9.237187 TCCAAAATTGAAGTATGCAATACACTA 57.763 29.630 0.00 0.00 45.83 2.74
2373 2776 8.121305 TCCAAAATTGAAGTATGCAATACACT 57.879 30.769 0.00 0.00 45.83 3.55
2374 2777 8.755696 TTCCAAAATTGAAGTATGCAATACAC 57.244 30.769 0.00 0.00 45.83 2.90
2384 2787 8.918202 ATAGTGTCACTTCCAAAATTGAAGTA 57.082 30.769 11.54 0.00 37.09 2.24
2430 2835 3.716353 TGGCTCCCATTGTACAGATGTAT 59.284 43.478 13.44 0.00 32.54 2.29
2434 2839 2.578021 AGTTGGCTCCCATTGTACAGAT 59.422 45.455 0.00 0.00 31.53 2.90
2516 2936 3.573538 TGCCTGCAAAAGAAAGAATAGCA 59.426 39.130 0.00 0.00 0.00 3.49
2933 3442 9.510062 TCCCTATAGAACCCAAAGAACTATTTA 57.490 33.333 0.00 0.00 0.00 1.40
2944 3453 4.562767 TGTAGCATCCCTATAGAACCCAA 58.437 43.478 0.00 0.00 0.00 4.12
2955 3464 1.337384 TGGCGTCATGTAGCATCCCT 61.337 55.000 14.83 0.00 34.54 4.20
3121 3630 3.809832 CCGTAGTGATCCTGCAATTAAGG 59.190 47.826 0.68 0.68 36.02 2.69
3266 3775 5.704515 AGAACAATCTCACTGAATCAACAGG 59.295 40.000 0.00 0.00 41.59 4.00
3406 3923 4.327680 AGCTGTTCAAATACTGAGGTTCC 58.672 43.478 0.00 0.00 34.81 3.62
3461 3978 5.552870 ATGGACTTTACCGCAGATAGAAT 57.447 39.130 0.00 0.00 0.00 2.40
3471 3988 7.201670 GGACTAATAAACCAATGGACTTTACCG 60.202 40.741 6.16 0.00 0.00 4.02
3473 3990 8.674607 CAGGACTAATAAACCAATGGACTTTAC 58.325 37.037 6.16 0.00 0.00 2.01
3479 3996 7.504926 ACTACAGGACTAATAAACCAATGGA 57.495 36.000 6.16 0.00 0.00 3.41
3490 4008 7.069950 TCACAGCATTCATACTACAGGACTAAT 59.930 37.037 0.00 0.00 0.00 1.73
3512 4030 4.559502 CGTTGAGTTGAGGAGAAGATCACA 60.560 45.833 0.00 0.00 0.00 3.58
3529 4047 2.146342 AGGTTGTGAGCATTCGTTGAG 58.854 47.619 0.00 0.00 0.00 3.02
3542 4060 6.183360 CCCTTCAAGCATATAGAAAGGTTGTG 60.183 42.308 0.00 0.00 40.52 3.33
3545 4063 6.079712 ACCCTTCAAGCATATAGAAAGGTT 57.920 37.500 0.00 0.00 33.47 3.50
3734 4253 1.897423 CCACGTCAGCTACATGGGA 59.103 57.895 0.00 0.00 0.00 4.37
3773 4292 7.776933 TTTCAGTTAGAGCATCACATGATAC 57.223 36.000 0.00 0.00 37.82 2.24
4028 4741 8.118600 AGGAAAGACAAATTGATTATCTTCCCT 58.881 33.333 0.00 0.00 30.22 4.20
4137 4850 4.104102 AGAGTAGGACCAATGGAAAACACA 59.896 41.667 6.16 0.00 0.00 3.72
4194 4907 6.399639 AAAAACGTCTTACATTGTGGGATT 57.600 33.333 0.00 0.00 0.00 3.01
4228 4941 8.493547 ACAATGTAAGACGTTTTTAGAAGCTAC 58.506 33.333 0.00 0.00 0.00 3.58
4229 4942 8.492748 CACAATGTAAGACGTTTTTAGAAGCTA 58.507 33.333 0.00 0.00 0.00 3.32
4230 4943 7.352739 CACAATGTAAGACGTTTTTAGAAGCT 58.647 34.615 0.00 0.00 0.00 3.74
4231 4944 6.577427 CCACAATGTAAGACGTTTTTAGAAGC 59.423 38.462 0.00 0.00 0.00 3.86
4232 4945 7.041644 TCCCACAATGTAAGACGTTTTTAGAAG 60.042 37.037 0.00 0.00 0.00 2.85
4233 4946 6.766944 TCCCACAATGTAAGACGTTTTTAGAA 59.233 34.615 0.00 0.00 0.00 2.10
4234 4947 6.203338 GTCCCACAATGTAAGACGTTTTTAGA 59.797 38.462 0.00 0.00 0.00 2.10
4235 4948 6.368213 GTCCCACAATGTAAGACGTTTTTAG 58.632 40.000 0.00 0.00 0.00 1.85
4236 4949 5.050227 CGTCCCACAATGTAAGACGTTTTTA 60.050 40.000 21.67 0.00 43.89 1.52
4237 4950 4.260866 CGTCCCACAATGTAAGACGTTTTT 60.261 41.667 21.67 0.00 43.89 1.94
4238 4951 3.249080 CGTCCCACAATGTAAGACGTTTT 59.751 43.478 21.67 0.00 43.89 2.43
4239 4952 2.803956 CGTCCCACAATGTAAGACGTTT 59.196 45.455 21.67 0.00 43.89 3.60
4240 4953 2.409975 CGTCCCACAATGTAAGACGTT 58.590 47.619 21.67 0.00 43.89 3.99
4241 4954 1.337447 CCGTCCCACAATGTAAGACGT 60.337 52.381 25.28 0.00 46.62 4.34
4243 4956 2.618053 CTCCGTCCCACAATGTAAGAC 58.382 52.381 5.24 5.24 0.00 3.01
4244 4957 1.553248 CCTCCGTCCCACAATGTAAGA 59.447 52.381 0.00 0.00 0.00 2.10
4245 4958 1.406887 CCCTCCGTCCCACAATGTAAG 60.407 57.143 0.00 0.00 0.00 2.34
4246 4959 0.616371 CCCTCCGTCCCACAATGTAA 59.384 55.000 0.00 0.00 0.00 2.41
4247 4960 0.252330 TCCCTCCGTCCCACAATGTA 60.252 55.000 0.00 0.00 0.00 2.29
4248 4961 1.537889 TCCCTCCGTCCCACAATGT 60.538 57.895 0.00 0.00 0.00 2.71
4249 4962 1.221840 CTCCCTCCGTCCCACAATG 59.778 63.158 0.00 0.00 0.00 2.82
4250 4963 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71
4251 4964 0.613853 CTACTCCCTCCGTCCCACAA 60.614 60.000 0.00 0.00 0.00 3.33
4252 4965 1.000019 CTACTCCCTCCGTCCCACA 60.000 63.158 0.00 0.00 0.00 4.17
4253 4966 1.757340 CCTACTCCCTCCGTCCCAC 60.757 68.421 0.00 0.00 0.00 4.61
4254 4967 0.920763 TACCTACTCCCTCCGTCCCA 60.921 60.000 0.00 0.00 0.00 4.37
4255 4968 0.482006 ATACCTACTCCCTCCGTCCC 59.518 60.000 0.00 0.00 0.00 4.46
4256 4969 1.144503 TCATACCTACTCCCTCCGTCC 59.855 57.143 0.00 0.00 0.00 4.79
4257 4970 2.653234 TCATACCTACTCCCTCCGTC 57.347 55.000 0.00 0.00 0.00 4.79
4258 4971 2.717515 AGATCATACCTACTCCCTCCGT 59.282 50.000 0.00 0.00 0.00 4.69
4259 4972 3.085533 CAGATCATACCTACTCCCTCCG 58.914 54.545 0.00 0.00 0.00 4.63
4260 4973 4.340617 CTCAGATCATACCTACTCCCTCC 58.659 52.174 0.00 0.00 0.00 4.30
4261 4974 4.340617 CCTCAGATCATACCTACTCCCTC 58.659 52.174 0.00 0.00 0.00 4.30
4262 4975 3.501385 GCCTCAGATCATACCTACTCCCT 60.501 52.174 0.00 0.00 0.00 4.20
4263 4976 2.829120 GCCTCAGATCATACCTACTCCC 59.171 54.545 0.00 0.00 0.00 4.30
4264 4977 3.501349 TGCCTCAGATCATACCTACTCC 58.499 50.000 0.00 0.00 0.00 3.85
4265 4978 6.209589 TGTTATGCCTCAGATCATACCTACTC 59.790 42.308 0.00 0.00 0.00 2.59
4278 4991 2.216898 GGCTTAGCTGTTATGCCTCAG 58.783 52.381 17.43 0.00 44.95 3.35
4288 5001 1.307647 CCCCCAATGGCTTAGCTGT 59.692 57.895 3.59 0.00 0.00 4.40
4365 5078 4.571176 GGCTCATAGTTAACTTACTGCCAC 59.429 45.833 24.52 11.02 36.91 5.01
4400 5113 5.966853 TTAGATCCATATTGGTCCACACA 57.033 39.130 0.00 0.00 39.03 3.72
4465 5181 4.615912 CCAAATTGGTAACTTCGGCAGAAG 60.616 45.833 22.84 22.84 44.76 2.85
4513 5229 9.778741 TTATCTGAGACACTTTACAAAGTTGAT 57.221 29.630 4.61 5.51 46.52 2.57
4537 5253 4.013728 AGCGGGCACAAGAATACAAATTA 58.986 39.130 0.00 0.00 0.00 1.40
4709 5425 5.278169 CCAGAGTTGACCAGAAAAATGACAG 60.278 44.000 0.00 0.00 0.00 3.51
4738 5454 2.161609 CGTGGCACCATTAAAGGAGAAC 59.838 50.000 12.86 0.00 0.00 3.01
4812 5528 6.519679 AAGCATTAAATCTTGAGCATGTCA 57.480 33.333 0.00 0.00 0.00 3.58
4825 5541 8.194104 TCCGTGCACATTTATAAAGCATTAAAT 58.806 29.630 18.64 0.00 37.56 1.40
4908 5671 2.155539 GCGCAATGATCAACCAAAACAC 59.844 45.455 0.30 0.00 0.00 3.32
4910 5673 2.676076 AGCGCAATGATCAACCAAAAC 58.324 42.857 11.47 0.00 0.00 2.43
4953 5716 6.703319 TCTGTATAACTCACCGAAAATGGAA 58.297 36.000 0.00 0.00 0.00 3.53
5044 5807 2.089980 ACAGGCACATTCTCATGAAGC 58.910 47.619 0.00 0.00 35.44 3.86
5050 5813 3.070476 TGCATTACAGGCACATTCTCA 57.930 42.857 0.00 0.00 36.11 3.27
5076 5839 4.272489 ACATGAACCCACAGGATATTGTG 58.728 43.478 0.00 1.18 46.24 3.33
5127 5890 4.997565 ACATGTCAAAATAAATGCTCGGG 58.002 39.130 0.00 0.00 0.00 5.14
5129 5892 8.839947 TCATAACATGTCAAAATAAATGCTCG 57.160 30.769 0.00 0.00 0.00 5.03
5161 5924 2.175878 ACTGACCTTGACATCTGTGC 57.824 50.000 0.00 0.00 0.00 4.57
5201 5964 3.417101 TGCTGACGATTTGGTTGGTAAT 58.583 40.909 0.00 0.00 0.00 1.89
5202 5965 2.852449 TGCTGACGATTTGGTTGGTAA 58.148 42.857 0.00 0.00 0.00 2.85
5367 6130 3.377253 AACCTGAATCATGATGCACCT 57.623 42.857 12.72 0.00 0.00 4.00
5368 6131 4.641989 AGTAAACCTGAATCATGATGCACC 59.358 41.667 12.72 1.93 0.00 5.01
5369 6132 5.575957 CAGTAAACCTGAATCATGATGCAC 58.424 41.667 12.72 2.03 44.49 4.57
5519 6282 2.868583 CAGTTGCTCGTATGATCCCAAG 59.131 50.000 0.00 0.00 0.00 3.61
5777 6540 5.621422 CCAAATGTCTTGTACAGATTGTCG 58.379 41.667 0.00 0.00 42.70 4.35
6165 6929 4.997565 TGCTGAAAACAGAAGACAAAAGG 58.002 39.130 0.00 0.00 0.00 3.11
6216 6980 2.778299 TGTACTCACAGTTCATTGGCC 58.222 47.619 0.00 0.00 0.00 5.36
6342 7108 7.872483 CCCTTATCAAATGTTAGCACAAAAAGT 59.128 33.333 0.00 0.00 36.16 2.66
6407 7173 8.697846 TCTGACAGGTTACAAGTTAATATTCG 57.302 34.615 1.81 0.00 0.00 3.34
6650 7429 7.904094 TGCAACTTAGCAAAAATAAACAACAG 58.096 30.769 0.00 0.00 42.46 3.16
7110 7909 1.636148 ATCCTGCAGCAAACCAACAT 58.364 45.000 8.66 0.00 0.00 2.71
7583 8509 2.036256 GAGTGCTTGCCCACCCAT 59.964 61.111 0.00 0.00 36.38 4.00
7584 8510 4.641645 CGAGTGCTTGCCCACCCA 62.642 66.667 0.00 0.00 36.38 4.51
7647 8581 7.007099 GCAACGTTAACATATTTTCTTTCCTCG 59.993 37.037 0.00 0.00 0.00 4.63
7648 8582 7.806014 TGCAACGTTAACATATTTTCTTTCCTC 59.194 33.333 0.00 0.00 0.00 3.71
7694 8629 4.357279 GCAGCTGACCCTGGGCTT 62.357 66.667 20.43 0.00 33.74 4.35
7745 8680 8.887036 AAAGAAAGCGGTTTGAATTTTTCTAT 57.113 26.923 18.67 0.00 34.74 1.98
7787 8726 4.717233 ACACATTTCACTGCAAAAGACA 57.283 36.364 0.00 0.00 0.00 3.41
7817 8756 6.346477 TCAGTCAGAGTGCTGTTTAACTAT 57.654 37.500 0.00 0.00 42.84 2.12
7832 8771 8.540388 AGCCAATAAGTAAATAACTCAGTCAGA 58.460 33.333 0.00 0.00 37.50 3.27
7833 8772 8.723942 AGCCAATAAGTAAATAACTCAGTCAG 57.276 34.615 0.00 0.00 37.50 3.51
7861 8800 9.920946 AGAAATAAATAAATCTTCCTGGCTACA 57.079 29.630 0.00 0.00 0.00 2.74
7864 8803 9.259832 ACAAGAAATAAATAAATCTTCCTGGCT 57.740 29.630 0.00 0.00 30.01 4.75
7865 8804 9.521503 GACAAGAAATAAATAAATCTTCCTGGC 57.478 33.333 0.00 0.00 30.01 4.85
7866 8805 9.722056 CGACAAGAAATAAATAAATCTTCCTGG 57.278 33.333 0.00 0.00 30.01 4.45
7899 8838 7.700656 GTGCTACTGTTTATGTGTCAAGTTTTT 59.299 33.333 0.00 0.00 0.00 1.94
7900 8839 7.193595 GTGCTACTGTTTATGTGTCAAGTTTT 58.806 34.615 0.00 0.00 0.00 2.43
7901 8840 6.238648 GGTGCTACTGTTTATGTGTCAAGTTT 60.239 38.462 0.00 0.00 0.00 2.66
7902 8841 5.238650 GGTGCTACTGTTTATGTGTCAAGTT 59.761 40.000 0.00 0.00 0.00 2.66
7903 8842 4.755123 GGTGCTACTGTTTATGTGTCAAGT 59.245 41.667 0.00 0.00 0.00 3.16
7904 8843 4.754618 TGGTGCTACTGTTTATGTGTCAAG 59.245 41.667 0.00 0.00 0.00 3.02
7905 8844 4.709250 TGGTGCTACTGTTTATGTGTCAA 58.291 39.130 0.00 0.00 0.00 3.18
7906 8845 4.314961 CTGGTGCTACTGTTTATGTGTCA 58.685 43.478 0.00 0.00 0.00 3.58
7907 8846 3.684788 CCTGGTGCTACTGTTTATGTGTC 59.315 47.826 0.00 0.00 0.00 3.67
7908 8847 3.559171 CCCTGGTGCTACTGTTTATGTGT 60.559 47.826 0.00 0.00 0.00 3.72
7909 8848 3.009723 CCCTGGTGCTACTGTTTATGTG 58.990 50.000 0.00 0.00 0.00 3.21
7910 8849 2.618045 GCCCTGGTGCTACTGTTTATGT 60.618 50.000 0.00 0.00 0.00 2.29
7911 8850 2.017049 GCCCTGGTGCTACTGTTTATG 58.983 52.381 0.00 0.00 0.00 1.90
7912 8851 1.633432 TGCCCTGGTGCTACTGTTTAT 59.367 47.619 8.32 0.00 0.00 1.40
7913 8852 1.060729 TGCCCTGGTGCTACTGTTTA 58.939 50.000 8.32 0.00 0.00 2.01
7914 8853 0.405585 ATGCCCTGGTGCTACTGTTT 59.594 50.000 8.32 0.00 0.00 2.83
7915 8854 0.405585 AATGCCCTGGTGCTACTGTT 59.594 50.000 8.32 0.00 0.00 3.16
7916 8855 0.405585 AAATGCCCTGGTGCTACTGT 59.594 50.000 8.32 0.00 0.00 3.55
7917 8856 2.418368 TAAATGCCCTGGTGCTACTG 57.582 50.000 8.32 0.00 0.00 2.74
7918 8857 3.669939 AATAAATGCCCTGGTGCTACT 57.330 42.857 8.32 0.00 0.00 2.57
7919 8858 6.405278 AATAAATAAATGCCCTGGTGCTAC 57.595 37.500 8.32 0.00 0.00 3.58
7920 8859 8.001875 TCTAAATAAATAAATGCCCTGGTGCTA 58.998 33.333 8.32 0.00 0.00 3.49
7921 8860 5.955961 AAATAAATAAATGCCCTGGTGCT 57.044 34.783 8.32 0.00 0.00 4.40
7922 8861 7.049799 TCTAAATAAATAAATGCCCTGGTGC 57.950 36.000 0.00 0.00 0.00 5.01
7923 8862 7.653311 GCTTCTAAATAAATAAATGCCCTGGTG 59.347 37.037 0.00 0.00 0.00 4.17
7924 8863 7.470009 CGCTTCTAAATAAATAAATGCCCTGGT 60.470 37.037 0.00 0.00 0.00 4.00
7925 8864 6.863126 CGCTTCTAAATAAATAAATGCCCTGG 59.137 38.462 0.00 0.00 0.00 4.45
7926 8865 7.648142 TCGCTTCTAAATAAATAAATGCCCTG 58.352 34.615 0.00 0.00 0.00 4.45
7927 8866 7.502561 ACTCGCTTCTAAATAAATAAATGCCCT 59.497 33.333 0.00 0.00 0.00 5.19
7928 8867 7.649057 ACTCGCTTCTAAATAAATAAATGCCC 58.351 34.615 0.00 0.00 0.00 5.36
7929 8868 9.595357 GTACTCGCTTCTAAATAAATAAATGCC 57.405 33.333 0.00 0.00 0.00 4.40
7934 8873 8.823818 GGCAAGTACTCGCTTCTAAATAAATAA 58.176 33.333 5.65 0.00 0.00 1.40
7935 8874 7.168637 CGGCAAGTACTCGCTTCTAAATAAATA 59.831 37.037 5.65 0.00 0.00 1.40
7936 8875 6.018994 CGGCAAGTACTCGCTTCTAAATAAAT 60.019 38.462 5.65 0.00 0.00 1.40
7937 8876 5.290158 CGGCAAGTACTCGCTTCTAAATAAA 59.710 40.000 5.65 0.00 0.00 1.40
7938 8877 4.802039 CGGCAAGTACTCGCTTCTAAATAA 59.198 41.667 5.65 0.00 0.00 1.40
7939 8878 4.096833 TCGGCAAGTACTCGCTTCTAAATA 59.903 41.667 5.65 0.00 0.00 1.40
7940 8879 3.119245 TCGGCAAGTACTCGCTTCTAAAT 60.119 43.478 5.65 0.00 0.00 1.40
7941 8880 2.229543 TCGGCAAGTACTCGCTTCTAAA 59.770 45.455 5.65 0.00 0.00 1.85
7942 8881 1.814394 TCGGCAAGTACTCGCTTCTAA 59.186 47.619 5.65 0.00 0.00 2.10
7943 8882 1.400846 CTCGGCAAGTACTCGCTTCTA 59.599 52.381 5.65 0.00 0.00 2.10
7944 8883 0.171455 CTCGGCAAGTACTCGCTTCT 59.829 55.000 5.65 0.00 0.00 2.85
7945 8884 0.802607 CCTCGGCAAGTACTCGCTTC 60.803 60.000 5.65 0.00 0.00 3.86
7946 8885 1.215647 CCTCGGCAAGTACTCGCTT 59.784 57.895 5.65 0.00 0.00 4.68
7947 8886 2.885861 CCTCGGCAAGTACTCGCT 59.114 61.111 5.65 0.00 0.00 4.93
7948 8887 2.886124 GCCTCGGCAAGTACTCGC 60.886 66.667 0.00 0.00 41.49 5.03
7949 8888 1.517257 CAGCCTCGGCAAGTACTCG 60.517 63.158 11.02 0.00 44.88 4.18
7950 8889 1.153549 CCAGCCTCGGCAAGTACTC 60.154 63.158 11.02 0.00 44.88 2.59
7951 8890 2.660064 CCCAGCCTCGGCAAGTACT 61.660 63.158 11.02 0.00 44.88 2.73
7952 8891 2.125106 CCCAGCCTCGGCAAGTAC 60.125 66.667 11.02 0.00 44.88 2.73
7953 8892 4.096003 GCCCAGCCTCGGCAAGTA 62.096 66.667 11.02 0.00 46.27 2.24
7959 8898 4.082523 TTCGAAGCCCAGCCTCGG 62.083 66.667 7.65 0.00 41.98 4.63
7960 8899 2.815647 GTTCGAAGCCCAGCCTCG 60.816 66.667 0.00 1.24 42.88 4.63
7961 8900 2.815647 CGTTCGAAGCCCAGCCTC 60.816 66.667 0.00 0.00 0.00 4.70
7962 8901 3.626924 ACGTTCGAAGCCCAGCCT 61.627 61.111 0.00 0.00 0.00 4.58
7963 8902 3.423154 CACGTTCGAAGCCCAGCC 61.423 66.667 0.00 0.00 0.00 4.85
7964 8903 3.423154 CCACGTTCGAAGCCCAGC 61.423 66.667 0.00 0.00 0.00 4.85
7965 8904 2.742372 CCCACGTTCGAAGCCCAG 60.742 66.667 0.00 0.00 0.00 4.45
7966 8905 3.552384 ACCCACGTTCGAAGCCCA 61.552 61.111 0.00 0.00 0.00 5.36
7967 8906 3.047877 CACCCACGTTCGAAGCCC 61.048 66.667 0.00 0.00 0.00 5.19
7968 8907 3.047877 CCACCCACGTTCGAAGCC 61.048 66.667 0.00 0.00 0.00 4.35
7969 8908 3.047877 CCCACCCACGTTCGAAGC 61.048 66.667 0.00 0.00 0.00 3.86
7970 8909 3.047877 GCCCACCCACGTTCGAAG 61.048 66.667 0.00 0.00 0.00 3.79
7971 8910 4.973055 CGCCCACCCACGTTCGAA 62.973 66.667 0.00 0.00 0.00 3.71
7982 8921 4.814294 AATCGACCGCTCGCCCAC 62.814 66.667 0.00 0.00 39.96 4.61
7983 8922 4.077184 AAATCGACCGCTCGCCCA 62.077 61.111 0.00 0.00 39.96 5.36
7984 8923 3.564027 CAAATCGACCGCTCGCCC 61.564 66.667 0.00 0.00 39.96 6.13
7985 8924 2.813908 ACAAATCGACCGCTCGCC 60.814 61.111 0.00 0.00 39.96 5.54
7986 8925 2.395690 CACAAATCGACCGCTCGC 59.604 61.111 0.00 0.00 39.96 5.03
7987 8926 2.395690 GCACAAATCGACCGCTCG 59.604 61.111 0.00 0.00 41.65 5.03
7988 8927 2.785258 GGCACAAATCGACCGCTC 59.215 61.111 0.00 0.00 0.00 5.03
7989 8928 3.118454 CGGCACAAATCGACCGCT 61.118 61.111 0.00 0.00 39.08 5.52
7992 8931 3.039202 CTGGCGGCACAAATCGACC 62.039 63.158 7.97 0.00 32.66 4.79
7993 8932 2.480555 CTGGCGGCACAAATCGAC 59.519 61.111 7.97 0.00 34.54 4.20
7994 8933 3.430862 GCTGGCGGCACAAATCGA 61.431 61.111 14.74 0.00 41.35 3.59
7995 8934 4.481112 GGCTGGCGGCACAAATCG 62.481 66.667 21.68 0.00 44.01 3.34
7996 8935 2.929903 TTGGCTGGCGGCACAAATC 61.930 57.895 21.68 1.45 46.30 2.17
7997 8936 2.916703 TTGGCTGGCGGCACAAAT 60.917 55.556 21.68 0.00 46.30 2.32
7998 8937 3.910490 GTTGGCTGGCGGCACAAA 61.910 61.111 21.68 8.41 46.30 2.83
7999 8938 4.892965 AGTTGGCTGGCGGCACAA 62.893 61.111 21.68 17.98 46.30 3.33
8005 8944 3.730761 GTGCTCAGTTGGCTGGCG 61.731 66.667 0.00 0.00 42.78 5.69
8006 8945 1.900498 AAGTGCTCAGTTGGCTGGC 60.900 57.895 0.00 0.00 42.78 4.85
8007 8946 0.820891 ACAAGTGCTCAGTTGGCTGG 60.821 55.000 18.39 0.00 44.02 4.85
8008 8947 0.309922 CACAAGTGCTCAGTTGGCTG 59.690 55.000 18.39 7.67 44.02 4.85
8009 8948 0.820891 CCACAAGTGCTCAGTTGGCT 60.821 55.000 18.39 0.00 44.02 4.75
8010 8949 1.103398 ACCACAAGTGCTCAGTTGGC 61.103 55.000 18.39 0.00 44.02 4.52
8011 8950 1.066002 CAACCACAAGTGCTCAGTTGG 59.934 52.381 18.39 7.82 44.02 3.77
8012 8951 1.745087 ACAACCACAAGTGCTCAGTTG 59.255 47.619 14.07 14.07 44.96 3.16
8013 8952 2.017049 GACAACCACAAGTGCTCAGTT 58.983 47.619 0.00 0.00 0.00 3.16
8014 8953 1.668419 GACAACCACAAGTGCTCAGT 58.332 50.000 0.00 0.00 0.00 3.41
8015 8954 0.583438 CGACAACCACAAGTGCTCAG 59.417 55.000 0.00 0.00 0.00 3.35
8016 8955 0.107897 ACGACAACCACAAGTGCTCA 60.108 50.000 0.00 0.00 0.00 4.26
8017 8956 1.014352 AACGACAACCACAAGTGCTC 58.986 50.000 0.00 0.00 0.00 4.26
8063 9198 7.309438 GCTTCTCACTTTCCACCAAATAGAAAT 60.309 37.037 0.00 0.00 0.00 2.17
8074 9209 1.000955 TCGAGGCTTCTCACTTTCCAC 59.999 52.381 0.00 0.00 37.37 4.02
8128 9264 2.442236 AAGAAACATCATGCCGGGAT 57.558 45.000 0.92 0.92 0.00 3.85
8130 9266 1.818060 TGAAAGAAACATCATGCCGGG 59.182 47.619 2.18 0.00 0.00 5.73
8131 9267 3.574284 TTGAAAGAAACATCATGCCGG 57.426 42.857 0.00 0.00 0.00 6.13
8132 9268 4.797471 TCTTTGAAAGAAACATCATGCCG 58.203 39.130 4.94 0.00 33.83 5.69
8215 9406 7.643579 AGCTCAACACTAGAAAACTCAAATTC 58.356 34.615 0.00 0.00 0.00 2.17
8326 9528 5.843673 ATCGACATGACTGACAAGATACT 57.156 39.130 0.00 0.00 0.00 2.12
8327 9529 6.088749 GCATATCGACATGACTGACAAGATAC 59.911 42.308 8.12 0.00 0.00 2.24
8328 9530 6.152379 GCATATCGACATGACTGACAAGATA 58.848 40.000 8.12 0.00 0.00 1.98
8329 9531 4.987285 GCATATCGACATGACTGACAAGAT 59.013 41.667 8.12 0.00 0.00 2.40
8330 9532 4.363138 GCATATCGACATGACTGACAAGA 58.637 43.478 8.12 0.00 0.00 3.02
8331 9533 3.181178 CGCATATCGACATGACTGACAAG 59.819 47.826 8.12 0.00 41.67 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.