Multiple sequence alignment - TraesCS6D01G407600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G407600 chr6D 100.000 5915 0 0 1 5915 473099180 473093266 0.000000e+00 10924.0
1 TraesCS6D01G407600 chr6B 89.516 3224 284 28 1872 5073 718392114 718388923 0.000000e+00 4032.0
2 TraesCS6D01G407600 chr6B 86.940 3323 356 34 1872 5176 716440143 716436881 0.000000e+00 3661.0
3 TraesCS6D01G407600 chr6B 85.518 1526 155 27 360 1834 716441664 716440154 0.000000e+00 1533.0
4 TraesCS6D01G407600 chr6B 86.875 1379 136 21 487 1834 718393489 718392125 0.000000e+00 1502.0
5 TraesCS6D01G407600 chr6B 88.095 756 70 8 3561 4298 29937896 29937143 0.000000e+00 880.0
6 TraesCS6D01G407600 chr6B 92.714 549 36 3 2980 3528 29938446 29937902 0.000000e+00 789.0
7 TraesCS6D01G407600 chr6B 88.350 515 60 0 4309 4823 29937165 29936651 2.340000e-173 619.0
8 TraesCS6D01G407600 chr6B 87.387 333 8 10 39 360 718394218 718393909 9.430000e-93 351.0
9 TraesCS6D01G407600 chr6B 85.574 305 37 6 2382 2684 29938742 29938443 4.450000e-81 313.0
10 TraesCS6D01G407600 chr6B 84.231 260 15 7 6 265 716442849 716442616 4.610000e-56 230.0
11 TraesCS6D01G407600 chr6B 79.508 122 9 6 4984 5104 29936469 29936363 8.220000e-09 73.1
12 TraesCS6D01G407600 chr3D 89.984 639 57 4 5282 5915 591966565 591967201 0.000000e+00 819.0
13 TraesCS6D01G407600 chr3D 89.580 643 56 6 5282 5915 592002423 592003063 0.000000e+00 806.0
14 TraesCS6D01G407600 chr3D 88.095 630 62 12 5283 5909 462453582 462452963 0.000000e+00 736.0
15 TraesCS6D01G407600 chr1B 89.482 637 56 8 5282 5915 57026059 57025431 0.000000e+00 795.0
16 TraesCS6D01G407600 chr1B 88.746 622 59 9 5282 5900 57052729 57052116 0.000000e+00 750.0
17 TraesCS6D01G407600 chr1B 94.444 36 0 2 4898 4932 34992296 34992330 3.000000e-03 54.7
18 TraesCS6D01G407600 chr1B 100.000 28 0 0 4905 4932 34992642 34992669 1.100000e-02 52.8
19 TraesCS6D01G407600 chr1B 100.000 28 0 0 4905 4932 687309986 687309959 1.100000e-02 52.8
20 TraesCS6D01G407600 chr3A 88.281 640 66 8 5282 5915 54447272 54446636 0.000000e+00 758.0
21 TraesCS6D01G407600 chr3A 89.127 607 56 8 5282 5883 721879784 721879183 0.000000e+00 747.0
22 TraesCS6D01G407600 chr2D 87.671 657 68 8 5265 5915 531177183 531177832 0.000000e+00 752.0
23 TraesCS6D01G407600 chr2B 87.676 641 68 9 5283 5915 793383635 793384272 0.000000e+00 736.0
24 TraesCS6D01G407600 chr5A 75.754 961 180 34 2587 3519 653693157 653692222 9.100000e-118 435.0
25 TraesCS6D01G407600 chr5A 75.234 961 180 39 2587 3519 653617608 653616678 2.570000e-108 403.0
26 TraesCS6D01G407600 chr5A 100.000 29 0 0 4904 4932 605684653 605684625 3.000000e-03 54.7
27 TraesCS6D01G407600 chr5D 74.713 957 205 25 2583 3519 526426055 526425116 5.560000e-105 392.0
28 TraesCS6D01G407600 chr5D 74.086 957 203 29 2587 3519 526455964 526455029 9.430000e-93 351.0
29 TraesCS6D01G407600 chr5B 74.271 960 203 28 2583 3519 661866629 661865691 1.210000e-96 364.0
30 TraesCS6D01G407600 chr5B 75.796 314 59 10 3097 3403 661889492 661889189 6.180000e-30 143.0
31 TraesCS6D01G407600 chr5B 85.124 121 15 2 2584 2704 661880954 661880837 2.900000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G407600 chr6D 473093266 473099180 5914 True 10924.000000 10924 100.0000 1 5915 1 chr6D.!!$R1 5914
1 TraesCS6D01G407600 chr6B 718388923 718394218 5295 True 1961.666667 4032 87.9260 39 5073 3 chr6B.!!$R3 5034
2 TraesCS6D01G407600 chr6B 716436881 716442849 5968 True 1808.000000 3661 85.5630 6 5176 3 chr6B.!!$R2 5170
3 TraesCS6D01G407600 chr6B 29936363 29938742 2379 True 534.820000 880 86.8482 2382 5104 5 chr6B.!!$R1 2722
4 TraesCS6D01G407600 chr3D 591966565 591967201 636 False 819.000000 819 89.9840 5282 5915 1 chr3D.!!$F1 633
5 TraesCS6D01G407600 chr3D 592002423 592003063 640 False 806.000000 806 89.5800 5282 5915 1 chr3D.!!$F2 633
6 TraesCS6D01G407600 chr3D 462452963 462453582 619 True 736.000000 736 88.0950 5283 5909 1 chr3D.!!$R1 626
7 TraesCS6D01G407600 chr1B 57025431 57026059 628 True 795.000000 795 89.4820 5282 5915 1 chr1B.!!$R1 633
8 TraesCS6D01G407600 chr1B 57052116 57052729 613 True 750.000000 750 88.7460 5282 5900 1 chr1B.!!$R2 618
9 TraesCS6D01G407600 chr3A 54446636 54447272 636 True 758.000000 758 88.2810 5282 5915 1 chr3A.!!$R1 633
10 TraesCS6D01G407600 chr3A 721879183 721879784 601 True 747.000000 747 89.1270 5282 5883 1 chr3A.!!$R2 601
11 TraesCS6D01G407600 chr2D 531177183 531177832 649 False 752.000000 752 87.6710 5265 5915 1 chr2D.!!$F1 650
12 TraesCS6D01G407600 chr2B 793383635 793384272 637 False 736.000000 736 87.6760 5283 5915 1 chr2B.!!$F1 632
13 TraesCS6D01G407600 chr5A 653692222 653693157 935 True 435.000000 435 75.7540 2587 3519 1 chr5A.!!$R3 932
14 TraesCS6D01G407600 chr5A 653616678 653617608 930 True 403.000000 403 75.2340 2587 3519 1 chr5A.!!$R2 932
15 TraesCS6D01G407600 chr5D 526425116 526426055 939 True 392.000000 392 74.7130 2583 3519 1 chr5D.!!$R1 936
16 TraesCS6D01G407600 chr5D 526455029 526455964 935 True 351.000000 351 74.0860 2587 3519 1 chr5D.!!$R2 932
17 TraesCS6D01G407600 chr5B 661865691 661866629 938 True 364.000000 364 74.2710 2583 3519 1 chr5B.!!$R1 936

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
43 44 3.436243 TCCTTGTGACAAAACCAAACCT 58.564 40.909 0.0 0.0 0.00 3.50 F
1728 2651 0.036732 TGGCAACTCAAGCTACCAGG 59.963 55.000 0.0 0.0 37.61 4.45 F
2340 3274 0.034089 CCAAGGGGAAGGATGTCCAC 60.034 60.000 1.3 0.0 41.94 4.02 F
2395 3329 0.250124 AACACCAACGAATGAGGCGA 60.250 50.000 0.0 0.0 0.00 5.54 F
2460 3394 0.608130 TGATGTCTCACGGTTCCAGG 59.392 55.000 0.0 0.0 0.00 4.45 F
2461 3395 0.741221 GATGTCTCACGGTTCCAGGC 60.741 60.000 0.0 0.0 0.00 4.85 F
4406 5377 0.108585 GGTGCTCTCAACAACCTCCA 59.891 55.000 0.0 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1780 2703 0.038251 TGAAGGTCTAGCTGCACACG 60.038 55.000 1.02 0.00 0.00 4.49 R
2571 3505 1.211457 GATGGACCAGGCATCTCTTGT 59.789 52.381 0.00 0.00 0.00 3.16 R
4107 5072 1.911702 GAGGTAGGGTGCCCAACTCC 61.912 65.000 10.26 6.07 38.92 3.85 R
4170 5135 2.739379 GTTTGCTGCTTCTAGTGACTCC 59.261 50.000 0.00 0.00 0.00 3.85 R
4407 5378 7.556635 TCTCTCAAGGATCTCGTCATAGTTAAA 59.443 37.037 0.00 0.00 0.00 1.52 R
4480 5451 6.985645 TGGCACATAATCAATTCCAAATAAGC 59.014 34.615 0.00 0.00 0.00 3.09 R
5234 6266 0.036105 TGAGCAACACTGGATCGCAT 60.036 50.000 0.00 0.00 0.00 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 5.730296 TTCTTTTCCTTGTGACAAAACCA 57.270 34.783 0.00 0.00 0.00 3.67
39 40 5.730296 TCTTTTCCTTGTGACAAAACCAA 57.270 34.783 0.00 0.00 0.00 3.67
40 41 6.102897 TCTTTTCCTTGTGACAAAACCAAA 57.897 33.333 0.00 0.00 0.00 3.28
41 42 5.929415 TCTTTTCCTTGTGACAAAACCAAAC 59.071 36.000 0.00 0.00 0.00 2.93
42 43 3.878160 TCCTTGTGACAAAACCAAACC 57.122 42.857 0.00 0.00 0.00 3.27
43 44 3.436243 TCCTTGTGACAAAACCAAACCT 58.564 40.909 0.00 0.00 0.00 3.50
52 53 7.976734 TGTGACAAAACCAAACCTTTATACTTG 59.023 33.333 0.00 0.00 0.00 3.16
110 111 5.305585 TCCACCATAAAAGAAGAGACACAC 58.694 41.667 0.00 0.00 0.00 3.82
111 112 5.063204 CCACCATAAAAGAAGAGACACACA 58.937 41.667 0.00 0.00 0.00 3.72
112 113 5.180117 CCACCATAAAAGAAGAGACACACAG 59.820 44.000 0.00 0.00 0.00 3.66
113 114 5.760253 CACCATAAAAGAAGAGACACACAGT 59.240 40.000 0.00 0.00 0.00 3.55
114 115 6.929049 CACCATAAAAGAAGAGACACACAGTA 59.071 38.462 0.00 0.00 0.00 2.74
115 116 7.441157 CACCATAAAAGAAGAGACACACAGTAA 59.559 37.037 0.00 0.00 0.00 2.24
116 117 7.657761 ACCATAAAAGAAGAGACACACAGTAAG 59.342 37.037 0.00 0.00 0.00 2.34
117 118 5.993106 AAAAGAAGAGACACACAGTAAGC 57.007 39.130 0.00 0.00 0.00 3.09
118 119 4.672587 AAGAAGAGACACACAGTAAGCA 57.327 40.909 0.00 0.00 0.00 3.91
119 120 3.983741 AGAAGAGACACACAGTAAGCAC 58.016 45.455 0.00 0.00 0.00 4.40
120 121 3.639094 AGAAGAGACACACAGTAAGCACT 59.361 43.478 0.00 0.00 34.42 4.40
121 122 4.100189 AGAAGAGACACACAGTAAGCACTT 59.900 41.667 0.00 0.00 30.46 3.16
122 123 4.408182 AGAGACACACAGTAAGCACTTT 57.592 40.909 0.00 0.00 30.46 2.66
145 146 8.633075 TTTCTTTCTTGCAACTTTATCTGTTG 57.367 30.769 0.00 0.00 45.23 3.33
150 151 4.661993 TGCAACTTTATCTGTTGTAGCG 57.338 40.909 8.15 0.00 44.54 4.26
206 209 5.751243 ACAATTAGCGGACATATTTCCAC 57.249 39.130 8.60 0.00 35.04 4.02
234 237 4.686554 CCAATCCGCTATAGCTCAAGTTAC 59.313 45.833 21.98 0.00 39.32 2.50
357 788 6.983890 TCTGCCCAAAAACTGATAAAAACTTC 59.016 34.615 0.00 0.00 0.00 3.01
403 1263 3.960755 ACATCGGTGTCCTATCTGAATGA 59.039 43.478 0.00 0.00 31.41 2.57
412 1272 7.148340 GGTGTCCTATCTGAATGAAGAAACAAG 60.148 40.741 0.00 0.00 0.00 3.16
422 1282 7.475015 TGAATGAAGAAACAAGACTCAAACAG 58.525 34.615 0.00 0.00 0.00 3.16
467 1327 3.485463 TTTGTGTGGTTAGGTCTCCTG 57.515 47.619 0.00 0.00 34.61 3.86
614 1476 6.061441 ACAACAAGTGTTATCTCCACAATCA 58.939 36.000 0.00 0.00 37.01 2.57
631 1493 6.927936 CCACAATCAAACATATTTCCACAACA 59.072 34.615 0.00 0.00 0.00 3.33
632 1494 7.440556 CCACAATCAAACATATTTCCACAACAA 59.559 33.333 0.00 0.00 0.00 2.83
658 1520 3.834813 TCTGATGCAGTCATATACTCCCC 59.165 47.826 0.00 0.00 35.76 4.81
689 1578 5.049405 GGAATTACTGGATGTAGCAATTCCG 60.049 44.000 12.30 0.00 44.48 4.30
764 1653 6.868864 GGATCTGTTAGCATATACAATCACGT 59.131 38.462 0.00 0.00 0.00 4.49
860 1749 6.974932 TGAGTATTCAACATCTCAAAGCTC 57.025 37.500 0.00 0.00 34.61 4.09
908 1803 8.807397 CAGTCTATGCTTTTCATAAACGTAAC 57.193 34.615 0.00 0.00 34.56 2.50
1008 1904 3.140623 ACAAGTGCCAAAAATGCCAATC 58.859 40.909 0.00 0.00 0.00 2.67
1010 1906 1.344114 AGTGCCAAAAATGCCAATCGT 59.656 42.857 0.00 0.00 0.00 3.73
1011 1907 1.726248 GTGCCAAAAATGCCAATCGTC 59.274 47.619 0.00 0.00 0.00 4.20
1012 1908 1.337635 TGCCAAAAATGCCAATCGTCC 60.338 47.619 0.00 0.00 0.00 4.79
1017 1913 3.636929 AATGCCAATCGTCCCGCCA 62.637 57.895 0.00 0.00 0.00 5.69
1124 2020 2.168621 CGCTCGCACAAACGTGAG 59.831 61.111 0.00 0.00 44.65 3.51
1125 2021 2.551270 GCTCGCACAAACGTGAGG 59.449 61.111 0.00 0.00 42.58 3.86
1133 2029 2.032799 GCACAAACGTGAGGAATCACAA 59.967 45.455 8.91 0.00 40.42 3.33
1154 2050 6.092670 CACAAGACTGAAACTGAGACTTTGAA 59.907 38.462 0.00 0.00 0.00 2.69
1155 2051 6.655003 ACAAGACTGAAACTGAGACTTTGAAA 59.345 34.615 0.00 0.00 0.00 2.69
1199 2095 4.872691 ACAGAGAATTACAGATGGCGAAAG 59.127 41.667 0.00 0.00 0.00 2.62
1233 2129 2.162681 CCAACGGAAGAAGCAAAGGAT 58.837 47.619 0.00 0.00 0.00 3.24
1241 2137 0.109132 GAAGCAAAGGATTGGGTGCG 60.109 55.000 0.00 0.00 41.90 5.34
1321 2220 1.887956 GCAGAATCTTTGGGTGCTCCA 60.888 52.381 7.20 0.85 45.43 3.86
1354 2259 4.159693 GGGGAAACTATAAAACCAGCAAGG 59.840 45.833 0.00 0.00 45.67 3.61
1384 2289 1.072806 AGAAGGTGCATGCTGTGAGAA 59.927 47.619 20.33 0.00 0.00 2.87
1385 2290 1.198637 GAAGGTGCATGCTGTGAGAAC 59.801 52.381 20.33 6.38 0.00 3.01
1404 2309 6.551227 TGAGAACATATATCAGTAGCACACCT 59.449 38.462 0.00 0.00 0.00 4.00
1406 2311 6.551227 AGAACATATATCAGTAGCACACCTCA 59.449 38.462 0.00 0.00 0.00 3.86
1410 2315 0.685097 TCAGTAGCACACCTCAACCC 59.315 55.000 0.00 0.00 0.00 4.11
1411 2316 0.396435 CAGTAGCACACCTCAACCCA 59.604 55.000 0.00 0.00 0.00 4.51
1417 2322 4.584638 AGCACACCTCAACCCAATAATA 57.415 40.909 0.00 0.00 0.00 0.98
1437 2342 1.809619 CACACGCATACCACCTCCG 60.810 63.158 0.00 0.00 0.00 4.63
1446 2351 2.741878 TACCACCTCCGCCTCCTGTT 62.742 60.000 0.00 0.00 0.00 3.16
1492 2397 1.449246 CTTCCGCCAAGCAGAGAGG 60.449 63.158 0.00 0.00 0.00 3.69
1493 2398 1.892819 CTTCCGCCAAGCAGAGAGGA 61.893 60.000 0.00 0.00 0.00 3.71
1514 2419 5.049167 GGATACTCTCAACAATGCTCTCAG 58.951 45.833 0.00 0.00 0.00 3.35
1526 2431 1.432270 GCTCTCAGGTGCATTACGGC 61.432 60.000 0.00 0.00 32.83 5.68
1527 2432 0.108186 CTCTCAGGTGCATTACGGCA 60.108 55.000 0.00 0.00 42.53 5.69
1535 2449 2.472909 GCATTACGGCAGTGGGAGC 61.473 63.158 0.00 0.00 0.00 4.70
1555 2469 2.880443 CCATTGGAATATGGGGTCCAG 58.120 52.381 0.00 0.00 44.61 3.86
1556 2470 2.446666 CCATTGGAATATGGGGTCCAGA 59.553 50.000 0.00 0.00 44.61 3.86
1558 2472 4.292041 CCATTGGAATATGGGGTCCAGATA 59.708 45.833 0.00 0.00 44.61 1.98
1562 2476 4.109600 TGGAATATGGGGTCCAGATAGAGA 59.890 45.833 0.00 0.00 39.04 3.10
1565 2479 3.931241 ATGGGGTCCAGATAGAGATGA 57.069 47.619 0.00 0.00 36.75 2.92
1608 2522 7.972527 AGAAGATCAACGATTCATTTCTTGAG 58.027 34.615 0.00 0.00 35.27 3.02
1609 2523 6.674694 AGATCAACGATTCATTTCTTGAGG 57.325 37.500 0.00 0.00 35.27 3.86
1611 2525 6.881065 AGATCAACGATTCATTTCTTGAGGAA 59.119 34.615 0.00 0.00 35.27 3.36
1624 2538 2.925966 TGAGGAATGCCCCTTTGATT 57.074 45.000 0.00 0.00 36.49 2.57
1629 2543 3.261643 AGGAATGCCCCTTTGATTTTGTC 59.738 43.478 0.00 0.00 30.99 3.18
1633 2547 3.509442 TGCCCCTTTGATTTTGTCATCT 58.491 40.909 0.00 0.00 36.54 2.90
1636 2550 4.692155 GCCCCTTTGATTTTGTCATCTTTG 59.308 41.667 0.00 0.00 36.54 2.77
1640 2554 7.384932 CCCCTTTGATTTTGTCATCTTTGTTAC 59.615 37.037 0.00 0.00 36.54 2.50
1641 2555 7.925483 CCCTTTGATTTTGTCATCTTTGTTACA 59.075 33.333 0.00 0.00 36.54 2.41
1647 2561 3.674997 TGTCATCTTTGTTACAGCCTCC 58.325 45.455 0.00 0.00 0.00 4.30
1653 2567 2.839486 TTGTTACAGCCTCCAGTGAG 57.161 50.000 0.00 0.00 38.42 3.51
1662 2585 3.571748 CTCCAGTGAGGTCTCGGTA 57.428 57.895 0.00 0.00 39.02 4.02
1675 2598 2.599082 GTCTCGGTACAAGCTCAAATCG 59.401 50.000 0.00 0.00 0.00 3.34
1679 2602 4.171005 TCGGTACAAGCTCAAATCGTAAG 58.829 43.478 0.00 0.00 0.00 2.34
1684 2607 1.373570 AGCTCAAATCGTAAGCAGGC 58.626 50.000 0.00 0.00 38.51 4.85
1687 2610 1.936547 CTCAAATCGTAAGCAGGCTCC 59.063 52.381 0.00 0.00 37.18 4.70
1691 2614 0.384669 ATCGTAAGCAGGCTCCGTAC 59.615 55.000 11.41 0.00 37.18 3.67
1693 2616 0.525668 CGTAAGCAGGCTCCGTACAG 60.526 60.000 2.53 0.00 0.00 2.74
1705 2628 1.800315 CGTACAGACGCGGTTCCTG 60.800 63.158 12.47 14.19 43.21 3.86
1711 2634 2.047274 ACGCGGTTCCTGATGTGG 60.047 61.111 12.47 0.00 0.00 4.17
1714 2637 1.971167 GCGGTTCCTGATGTGGCAA 60.971 57.895 0.00 0.00 0.00 4.52
1720 2643 2.189594 TCCTGATGTGGCAACTCAAG 57.810 50.000 0.00 0.00 44.35 3.02
1721 2644 0.524862 CCTGATGTGGCAACTCAAGC 59.475 55.000 0.00 0.00 44.35 4.01
1722 2645 1.531423 CTGATGTGGCAACTCAAGCT 58.469 50.000 0.00 0.00 44.35 3.74
1723 2646 2.616256 CCTGATGTGGCAACTCAAGCTA 60.616 50.000 0.00 0.00 44.35 3.32
1724 2647 2.417933 CTGATGTGGCAACTCAAGCTAC 59.582 50.000 0.00 0.00 44.35 3.58
1725 2648 1.740025 GATGTGGCAACTCAAGCTACC 59.260 52.381 0.00 0.00 44.35 3.18
1726 2649 0.472044 TGTGGCAACTCAAGCTACCA 59.528 50.000 0.00 0.00 42.05 3.25
1727 2650 1.160137 GTGGCAACTCAAGCTACCAG 58.840 55.000 0.00 0.00 37.49 4.00
1728 2651 0.036732 TGGCAACTCAAGCTACCAGG 59.963 55.000 0.00 0.00 37.61 4.45
1733 2656 4.061596 GCAACTCAAGCTACCAGGATATC 58.938 47.826 0.00 0.00 0.00 1.63
1780 2703 1.168714 GCTGTTGGTGGATGACCTTC 58.831 55.000 0.00 0.00 46.32 3.46
1784 2707 0.762418 TTGGTGGATGACCTTCGTGT 59.238 50.000 0.00 0.00 46.32 4.49
1786 2709 1.298859 GGTGGATGACCTTCGTGTGC 61.299 60.000 0.00 0.00 42.25 4.57
1798 2721 0.243907 TCGTGTGCAGCTAGACCTTC 59.756 55.000 0.00 0.00 0.00 3.46
1799 2722 0.038251 CGTGTGCAGCTAGACCTTCA 60.038 55.000 0.00 0.00 0.00 3.02
1805 2728 1.367659 CAGCTAGACCTTCAAGCAGC 58.632 55.000 0.00 0.00 38.75 5.25
1829 2752 3.328931 GGCATTCCATATCCTCTTGGAGA 59.671 47.826 0.00 0.00 46.91 3.71
1842 2765 3.278367 CTTGGAGATGTGCAAGTTGTG 57.722 47.619 14.96 0.00 44.82 3.33
1843 2766 1.608055 TGGAGATGTGCAAGTTGTGG 58.392 50.000 4.48 0.00 0.00 4.17
1844 2767 1.142667 TGGAGATGTGCAAGTTGTGGA 59.857 47.619 4.48 0.00 0.00 4.02
1845 2768 2.229792 GGAGATGTGCAAGTTGTGGAA 58.770 47.619 4.48 0.00 0.00 3.53
1846 2769 2.227388 GGAGATGTGCAAGTTGTGGAAG 59.773 50.000 4.48 0.00 0.00 3.46
1847 2770 1.610522 AGATGTGCAAGTTGTGGAAGC 59.389 47.619 4.48 0.00 0.00 3.86
1848 2771 0.675633 ATGTGCAAGTTGTGGAAGCC 59.324 50.000 4.48 0.00 0.00 4.35
1849 2772 1.008538 GTGCAAGTTGTGGAAGCCG 60.009 57.895 4.48 0.00 0.00 5.52
1850 2773 2.192861 TGCAAGTTGTGGAAGCCGG 61.193 57.895 4.48 0.00 0.00 6.13
1851 2774 2.919494 GCAAGTTGTGGAAGCCGGG 61.919 63.158 2.18 0.00 0.00 5.73
1852 2775 2.597510 AAGTTGTGGAAGCCGGGC 60.598 61.111 12.11 12.11 0.00 6.13
1853 2776 3.429372 AAGTTGTGGAAGCCGGGCA 62.429 57.895 23.09 0.00 0.00 5.36
1854 2777 2.909965 GTTGTGGAAGCCGGGCAA 60.910 61.111 23.09 1.98 0.00 4.52
1855 2778 2.597217 TTGTGGAAGCCGGGCAAG 60.597 61.111 23.09 0.00 0.00 4.01
1856 2779 3.429372 TTGTGGAAGCCGGGCAAGT 62.429 57.895 23.09 5.60 0.00 3.16
1857 2780 2.597510 GTGGAAGCCGGGCAAGTT 60.598 61.111 23.09 6.76 0.00 2.66
1858 2781 2.197324 TGGAAGCCGGGCAAGTTT 59.803 55.556 23.09 6.34 0.00 2.66
1859 2782 1.901464 TGGAAGCCGGGCAAGTTTC 60.901 57.895 23.09 15.41 0.00 2.78
1860 2783 1.603739 GGAAGCCGGGCAAGTTTCT 60.604 57.895 23.09 0.00 0.00 2.52
1861 2784 1.587043 GGAAGCCGGGCAAGTTTCTC 61.587 60.000 23.09 6.62 0.00 2.87
1862 2785 1.912371 GAAGCCGGGCAAGTTTCTCG 61.912 60.000 23.09 0.00 0.00 4.04
1863 2786 4.103103 GCCGGGCAAGTTTCTCGC 62.103 66.667 15.62 0.00 0.00 5.03
1864 2787 2.358737 CCGGGCAAGTTTCTCGCT 60.359 61.111 0.00 0.00 0.00 4.93
1865 2788 2.680913 CCGGGCAAGTTTCTCGCTG 61.681 63.158 0.00 0.00 0.00 5.18
1866 2789 2.680913 CGGGCAAGTTTCTCGCTGG 61.681 63.158 0.00 0.00 0.00 4.85
1867 2790 2.335712 GGGCAAGTTTCTCGCTGGG 61.336 63.158 0.00 0.00 0.00 4.45
1868 2791 1.600916 GGCAAGTTTCTCGCTGGGT 60.601 57.895 0.00 0.00 0.00 4.51
1870 2793 1.576421 CAAGTTTCTCGCTGGGTGC 59.424 57.895 0.00 0.00 38.57 5.01
1878 2801 2.032528 CGCTGGGTGCAGAGGAAA 59.967 61.111 0.00 0.00 43.06 3.13
1882 2805 0.607489 CTGGGTGCAGAGGAAAGTGG 60.607 60.000 0.00 0.00 0.00 4.00
1885 2808 1.339151 GGGTGCAGAGGAAAGTGGTAG 60.339 57.143 0.00 0.00 0.00 3.18
1889 2812 2.037251 TGCAGAGGAAAGTGGTAGTCAC 59.963 50.000 0.00 0.00 46.39 3.67
1912 2835 9.223099 TCACATCAATATCACAATCCATATGTC 57.777 33.333 1.24 0.00 0.00 3.06
1941 2864 8.685257 TGATGGATGTAGAAAGGGATATACAT 57.315 34.615 0.00 0.00 40.59 2.29
1946 2869 5.865085 TGTAGAAAGGGATATACATGTGCC 58.135 41.667 9.11 4.52 0.00 5.01
1949 2872 4.660303 AGAAAGGGATATACATGTGCCTGA 59.340 41.667 9.11 0.00 38.73 3.86
1955 2878 4.460382 GGATATACATGTGCCTGATTTGGG 59.540 45.833 9.11 0.00 0.00 4.12
1956 2879 3.668141 ATACATGTGCCTGATTTGGGA 57.332 42.857 9.11 0.00 0.00 4.37
1962 2885 1.213926 GTGCCTGATTTGGGAGAGGAT 59.786 52.381 0.00 0.00 0.00 3.24
1965 2888 2.092212 GCCTGATTTGGGAGAGGATGAA 60.092 50.000 0.00 0.00 0.00 2.57
1970 2893 0.250234 TTGGGAGAGGATGAAGCACG 59.750 55.000 0.00 0.00 0.00 5.34
1975 2898 1.078848 GAGGATGAAGCACGCCAGT 60.079 57.895 0.00 0.00 0.00 4.00
1977 2900 0.957395 AGGATGAAGCACGCCAGTTG 60.957 55.000 0.00 0.00 0.00 3.16
1982 2905 1.208642 GAAGCACGCCAGTTGTTTGC 61.209 55.000 0.00 0.00 0.00 3.68
1984 2907 1.518133 GCACGCCAGTTGTTTGCAA 60.518 52.632 0.00 0.00 33.24 4.08
1987 2910 1.324134 CACGCCAGTTGTTTGCAAAAG 59.676 47.619 14.67 1.91 36.22 2.27
1988 2911 1.203523 ACGCCAGTTGTTTGCAAAAGA 59.796 42.857 14.67 2.29 36.22 2.52
1989 2912 2.266554 CGCCAGTTGTTTGCAAAAGAA 58.733 42.857 14.67 7.12 36.22 2.52
1997 2920 4.612932 TGTTTGCAAAAGAATTTGGTGC 57.387 36.364 14.67 0.00 44.93 5.01
1999 2922 1.216122 TGCAAAAGAATTTGGTGCGC 58.784 45.000 0.00 0.00 44.93 6.09
2002 2925 1.794116 CAAAAGAATTTGGTGCGCAGG 59.206 47.619 12.22 0.00 41.81 4.85
2005 2928 2.418368 AGAATTTGGTGCGCAGGATA 57.582 45.000 12.22 0.00 0.00 2.59
2011 2934 5.789643 ATTTGGTGCGCAGGATATTTATT 57.210 34.783 12.22 0.00 0.00 1.40
2030 2953 1.070445 CTGATCCTGTCATCGGGGC 59.930 63.158 0.00 0.00 40.36 5.80
2031 2954 1.383109 TGATCCTGTCATCGGGGCT 60.383 57.895 0.00 0.00 40.36 5.19
2037 2960 2.268920 GTCATCGGGGCTCTTGCA 59.731 61.111 0.00 0.00 41.91 4.08
2038 2961 1.817099 GTCATCGGGGCTCTTGCAG 60.817 63.158 0.00 0.00 41.91 4.41
2060 2983 6.202954 GCAGAGCAACTTGTAAGAGAACTAAA 59.797 38.462 0.00 0.00 0.00 1.85
2061 2984 7.254795 GCAGAGCAACTTGTAAGAGAACTAAAA 60.255 37.037 0.00 0.00 0.00 1.52
2062 2985 8.612619 CAGAGCAACTTGTAAGAGAACTAAAAA 58.387 33.333 0.00 0.00 0.00 1.94
2066 2989 7.468768 GCAACTTGTAAGAGAACTAAAAAGCCT 60.469 37.037 0.00 0.00 0.00 4.58
2067 2990 7.497925 ACTTGTAAGAGAACTAAAAAGCCTG 57.502 36.000 0.00 0.00 0.00 4.85
2076 2999 3.973425 ACTAAAAAGCCTGCCATCAGAT 58.027 40.909 0.00 0.00 42.95 2.90
2077 3000 4.347607 ACTAAAAAGCCTGCCATCAGATT 58.652 39.130 0.00 0.00 42.95 2.40
2084 3007 2.225019 GCCTGCCATCAGATTTGATACG 59.775 50.000 0.00 0.00 42.12 3.06
2087 3010 5.056480 CCTGCCATCAGATTTGATACGTTA 58.944 41.667 0.00 0.00 42.12 3.18
2088 3011 5.702670 CCTGCCATCAGATTTGATACGTTAT 59.297 40.000 0.00 0.00 42.12 1.89
2095 3018 6.288294 TCAGATTTGATACGTTATGGGAAGG 58.712 40.000 0.00 0.00 0.00 3.46
2097 3020 7.070198 TCAGATTTGATACGTTATGGGAAGGTA 59.930 37.037 0.00 0.00 0.00 3.08
2102 3025 3.637911 ACGTTATGGGAAGGTAATGCA 57.362 42.857 0.00 0.00 0.00 3.96
2104 3027 3.945285 ACGTTATGGGAAGGTAATGCAAG 59.055 43.478 0.00 0.00 0.00 4.01
2108 3031 3.756082 TGGGAAGGTAATGCAAGGAAT 57.244 42.857 0.00 0.00 0.00 3.01
2109 3032 4.871871 TGGGAAGGTAATGCAAGGAATA 57.128 40.909 0.00 0.00 0.00 1.75
2113 3036 5.532779 GGGAAGGTAATGCAAGGAATAAGAG 59.467 44.000 0.00 0.00 0.00 2.85
2117 3040 6.904626 AGGTAATGCAAGGAATAAGAGATGT 58.095 36.000 0.00 0.00 0.00 3.06
2123 3046 4.212214 GCAAGGAATAAGAGATGTAAGGCG 59.788 45.833 0.00 0.00 0.00 5.52
2128 3051 0.107654 AAGAGATGTAAGGCGGTGGC 60.108 55.000 0.00 0.00 38.90 5.01
2135 3058 1.748879 TAAGGCGGTGGCAAGATGC 60.749 57.895 0.00 0.00 44.08 3.91
2168 3091 3.990318 AAGGAAAGCAAACCTTCGAAG 57.010 42.857 18.51 18.51 41.95 3.79
2185 3108 2.585698 GGGACGGCGACCCATTAA 59.414 61.111 36.32 0.00 46.05 1.40
2186 3109 1.078285 GGGACGGCGACCCATTAAA 60.078 57.895 36.32 0.00 46.05 1.52
2188 3111 1.385528 GGACGGCGACCCATTAAATT 58.614 50.000 16.62 0.00 0.00 1.82
2198 3121 6.040054 GGCGACCCATTAAATTTGGTAAGTAT 59.960 38.462 0.00 0.00 31.99 2.12
2214 3137 9.772973 TTGGTAAGTATTTATATCAACGCTCAT 57.227 29.630 0.00 0.00 0.00 2.90
2215 3138 9.772973 TGGTAAGTATTTATATCAACGCTCATT 57.227 29.630 0.00 0.00 0.00 2.57
2227 3150 7.975866 ATCAACGCTCATTTTTCATATTGTC 57.024 32.000 0.00 0.00 0.00 3.18
2228 3151 6.020984 TCAACGCTCATTTTTCATATTGTCG 58.979 36.000 0.00 0.00 0.00 4.35
2229 3152 5.545658 ACGCTCATTTTTCATATTGTCGT 57.454 34.783 0.00 0.00 0.00 4.34
2231 3154 6.378582 ACGCTCATTTTTCATATTGTCGTTT 58.621 32.000 0.00 0.00 0.00 3.60
2233 3156 7.148983 ACGCTCATTTTTCATATTGTCGTTTTG 60.149 33.333 0.00 0.00 0.00 2.44
2279 3213 2.060050 TTGTCCTTGAAGGCGGAAAA 57.940 45.000 6.30 0.00 34.61 2.29
2280 3214 1.604604 TGTCCTTGAAGGCGGAAAAG 58.395 50.000 6.30 0.00 34.61 2.27
2287 3221 2.857483 TGAAGGCGGAAAAGATTGTGA 58.143 42.857 0.00 0.00 0.00 3.58
2291 3225 3.486383 AGGCGGAAAAGATTGTGAGAAA 58.514 40.909 0.00 0.00 0.00 2.52
2314 3248 2.670414 CTCAAGAATGCGACAGAAGACC 59.330 50.000 0.00 0.00 0.00 3.85
2318 3252 2.300152 AGAATGCGACAGAAGACCTGAA 59.700 45.455 0.00 0.00 45.78 3.02
2319 3253 3.055530 AGAATGCGACAGAAGACCTGAAT 60.056 43.478 0.00 0.00 45.78 2.57
2322 3256 1.363744 CGACAGAAGACCTGAATGCC 58.636 55.000 0.00 0.00 45.78 4.40
2325 3259 2.746362 GACAGAAGACCTGAATGCCAAG 59.254 50.000 0.00 0.00 45.78 3.61
2326 3260 2.089980 CAGAAGACCTGAATGCCAAGG 58.910 52.381 0.00 0.00 45.78 3.61
2327 3261 1.005215 AGAAGACCTGAATGCCAAGGG 59.995 52.381 0.00 0.00 0.00 3.95
2328 3262 0.040204 AAGACCTGAATGCCAAGGGG 59.960 55.000 0.00 0.00 37.18 4.79
2337 3271 0.259938 ATGCCAAGGGGAAGGATGTC 59.740 55.000 0.00 0.00 35.59 3.06
2338 3272 1.076705 GCCAAGGGGAAGGATGTCC 60.077 63.158 0.00 0.00 35.59 4.02
2339 3273 1.863155 GCCAAGGGGAAGGATGTCCA 61.863 60.000 1.30 0.00 39.70 4.02
2340 3274 0.034089 CCAAGGGGAAGGATGTCCAC 60.034 60.000 1.30 0.00 41.94 4.02
2342 3276 1.562672 AAGGGGAAGGATGTCCACCG 61.563 60.000 1.30 0.00 42.70 4.94
2344 3278 2.590092 GGAAGGATGTCCACCGGG 59.410 66.667 6.32 0.00 37.65 5.73
2350 3284 3.538614 ATGTCCACCGGGAGATCG 58.461 61.111 6.32 0.00 43.35 3.69
2351 3285 2.797278 ATGTCCACCGGGAGATCGC 61.797 63.158 6.32 0.00 43.35 4.58
2363 3297 2.028778 GATCGCGGATGCTGAGCT 59.971 61.111 6.13 0.00 39.65 4.09
2365 3299 1.006314 GATCGCGGATGCTGAGCTAC 61.006 60.000 6.13 0.00 39.65 3.58
2368 3302 1.756375 CGCGGATGCTGAGCTACAAC 61.756 60.000 5.83 0.00 39.65 3.32
2369 3303 0.740868 GCGGATGCTGAGCTACAACA 60.741 55.000 5.83 0.00 38.39 3.33
2370 3304 1.945387 CGGATGCTGAGCTACAACAT 58.055 50.000 5.83 0.00 37.91 2.71
2373 3307 4.060900 CGGATGCTGAGCTACAACATAAT 58.939 43.478 5.83 0.00 35.74 1.28
2377 3311 7.254761 CGGATGCTGAGCTACAACATAATAAAA 60.255 37.037 5.83 0.00 35.74 1.52
2378 3312 7.857885 GGATGCTGAGCTACAACATAATAAAAC 59.142 37.037 5.83 0.00 35.74 2.43
2379 3313 7.680442 TGCTGAGCTACAACATAATAAAACA 57.320 32.000 5.83 0.00 0.00 2.83
2380 3314 7.526608 TGCTGAGCTACAACATAATAAAACAC 58.473 34.615 5.83 0.00 0.00 3.32
2385 3319 7.302524 AGCTACAACATAATAAAACACCAACG 58.697 34.615 0.00 0.00 0.00 4.10
2394 3328 0.591170 AAACACCAACGAATGAGGCG 59.409 50.000 0.00 0.00 0.00 5.52
2395 3329 0.250124 AACACCAACGAATGAGGCGA 60.250 50.000 0.00 0.00 0.00 5.54
2397 3331 0.871722 CACCAACGAATGAGGCGAAA 59.128 50.000 0.00 0.00 0.00 3.46
2407 3341 1.308069 TGAGGCGAAAAGATGGCTGC 61.308 55.000 0.00 0.00 41.57 5.25
2416 3350 3.825143 AAAGATGGCTGCAAAAAGTGT 57.175 38.095 0.50 0.00 0.00 3.55
2417 3351 4.935352 AAAGATGGCTGCAAAAAGTGTA 57.065 36.364 0.50 0.00 0.00 2.90
2418 3352 5.473066 AAAGATGGCTGCAAAAAGTGTAT 57.527 34.783 0.50 0.00 0.00 2.29
2421 3355 5.954335 AGATGGCTGCAAAAAGTGTATAAC 58.046 37.500 0.50 0.00 0.00 1.89
2428 3362 7.009540 GGCTGCAAAAAGTGTATAACATCATTC 59.990 37.037 0.50 0.00 0.00 2.67
2432 3366 9.571810 GCAAAAAGTGTATAACATCATTCATGA 57.428 29.630 0.00 0.00 41.70 3.07
2449 3383 7.493645 TCATTCATGATGTACAAGTGATGTCTC 59.506 37.037 0.00 0.00 37.71 3.36
2450 3384 6.284891 TCATGATGTACAAGTGATGTCTCA 57.715 37.500 0.00 0.00 42.70 3.27
2459 3393 1.714794 GTGATGTCTCACGGTTCCAG 58.285 55.000 0.00 0.00 42.24 3.86
2460 3394 0.608130 TGATGTCTCACGGTTCCAGG 59.392 55.000 0.00 0.00 0.00 4.45
2461 3395 0.741221 GATGTCTCACGGTTCCAGGC 60.741 60.000 0.00 0.00 0.00 4.85
2471 3405 1.611673 CGGTTCCAGGCAGTTGAAGAT 60.612 52.381 0.00 0.00 0.00 2.40
2528 3462 5.635700 GTGAGGTTCAAGAATGTCTCAGTAC 59.364 44.000 11.12 0.00 33.53 2.73
2571 3505 1.555075 GAGTCAATGCCACCTCCTGTA 59.445 52.381 0.00 0.00 0.00 2.74
2625 3559 4.003648 AGAACCTTAACCTTCAAGATGCG 58.996 43.478 0.00 0.00 0.00 4.73
2755 3689 5.793817 AGGGCATGGACTTTAATTTTGTTC 58.206 37.500 0.00 0.00 0.00 3.18
2774 3708 4.134563 GTTCTCTTTGTAACTGCCTCCAA 58.865 43.478 0.00 0.00 0.00 3.53
2818 3752 3.941483 CCAGTCGCAAATCATAGAAAGGT 59.059 43.478 0.00 0.00 0.00 3.50
2828 3762 3.347216 TCATAGAAAGGTTCAAGCTGCC 58.653 45.455 0.00 0.00 0.00 4.85
2934 3877 9.334947 GATGAAATTGATCTAGAAGATGTTGGA 57.665 33.333 0.00 0.00 34.53 3.53
3125 4071 6.903534 ACTCTTTCTAGTCCCCATATTGAAGA 59.096 38.462 0.00 0.00 0.00 2.87
3244 4193 7.201992 GGGAAACTGCCATCCAATATATGAAAA 60.202 37.037 0.00 0.00 37.46 2.29
3270 4219 1.072806 TGCTGCACTGAGGACAAAGAT 59.927 47.619 0.00 0.00 0.00 2.40
3327 4276 5.064452 CAGGCAGCTGAAGTTTAGTTATGAG 59.936 44.000 20.43 0.00 0.00 2.90
3461 4410 9.082313 TCTAGTGAATGAGCATGACATAGAATA 57.918 33.333 0.00 0.00 0.00 1.75
3620 4569 6.480763 TGGCTTTATGGATTTCTTGTGACTA 58.519 36.000 0.00 0.00 0.00 2.59
3674 4623 1.242076 CCAGGTGGCAGAGACAAAAG 58.758 55.000 0.00 0.00 0.00 2.27
3677 4626 3.152341 CAGGTGGCAGAGACAAAAGAAT 58.848 45.455 0.00 0.00 0.00 2.40
3678 4627 3.190118 CAGGTGGCAGAGACAAAAGAATC 59.810 47.826 0.00 0.00 0.00 2.52
3690 4640 9.745018 AGAGACAAAAGAATCATTATCCTTTCA 57.255 29.630 0.00 0.00 0.00 2.69
3853 4806 5.104817 TCACTGACATATCTGGATTTGAGCA 60.105 40.000 7.75 5.25 0.00 4.26
3941 4894 6.991938 TGTCAGAAAATGTATTTGGGGAAAG 58.008 36.000 0.00 0.00 0.00 2.62
3953 4906 1.761174 GGGAAAGTGGAGTGCCTCA 59.239 57.895 4.85 0.00 34.31 3.86
4024 4977 4.877378 AGTGGTTACGTGAGAATACCAA 57.123 40.909 0.00 0.00 39.53 3.67
4025 4978 4.817517 AGTGGTTACGTGAGAATACCAAG 58.182 43.478 0.00 0.00 39.53 3.61
4107 5072 5.757099 AATGTACCCTATTCCTATTCCGG 57.243 43.478 0.00 0.00 0.00 5.14
4170 5135 6.634805 TCTGGTAAGAGATTTAGCTCAGTTG 58.365 40.000 0.00 0.00 37.37 3.16
4221 5189 9.512588 CCTGTTAGATATTTGGCTCTAAATGAT 57.487 33.333 2.09 0.00 36.13 2.45
4291 5259 7.721399 GGACCTTGTATGAACTGGATATCAATT 59.279 37.037 4.83 0.00 0.00 2.32
4292 5260 9.125026 GACCTTGTATGAACTGGATATCAATTT 57.875 33.333 4.83 0.00 0.00 1.82
4406 5377 0.108585 GGTGCTCTCAACAACCTCCA 59.891 55.000 0.00 0.00 0.00 3.86
4407 5378 1.271597 GGTGCTCTCAACAACCTCCAT 60.272 52.381 0.00 0.00 0.00 3.41
4480 5451 4.074970 AGCATTTATATTCCCAAGGCTCG 58.925 43.478 0.00 0.00 0.00 5.03
4495 5466 3.620488 AGGCTCGCTTATTTGGAATTGA 58.380 40.909 0.00 0.00 0.00 2.57
4755 5726 4.490743 GACTTGAGCTTGAAGGTAGTCTC 58.509 47.826 16.12 5.29 31.84 3.36
4789 5760 0.679505 TCCTTTCCAGTCGGACAGTG 59.320 55.000 11.27 0.52 42.67 3.66
4801 5772 2.124320 ACAGTGTGCCGCCAAAGT 60.124 55.556 0.00 0.00 0.00 2.66
5010 6038 1.074405 AGATGTTGCTTTCTCCTGGCA 59.926 47.619 0.00 0.00 0.00 4.92
5095 6127 2.115695 TGCAGCCAGGATGTGCAA 59.884 55.556 6.56 0.00 44.05 4.08
5119 6151 3.255642 TGTACATGCCTTCCTTTGCTTTC 59.744 43.478 0.00 0.00 0.00 2.62
5140 6172 1.073199 CGGAGCACCCCTCTTGTTT 59.927 57.895 0.00 0.00 40.57 2.83
5152 6184 6.265422 CACCCCTCTTGTTTCAATTAAGTCTT 59.735 38.462 0.00 0.00 0.00 3.01
5173 6205 2.507339 TAAAACTTGTTGCTGCAGCC 57.493 45.000 34.64 21.13 41.18 4.85
5176 6208 0.752743 AACTTGTTGCTGCAGCCAGA 60.753 50.000 34.64 21.10 41.77 3.86
5177 6209 1.170919 ACTTGTTGCTGCAGCCAGAG 61.171 55.000 34.64 26.17 41.77 3.35
5178 6210 2.473664 CTTGTTGCTGCAGCCAGAGC 62.474 60.000 34.64 19.16 41.77 4.09
5189 6221 3.450028 GCCAGAGCTGACGAGATTT 57.550 52.632 0.00 0.00 35.50 2.17
5190 6222 2.586258 GCCAGAGCTGACGAGATTTA 57.414 50.000 0.00 0.00 35.50 1.40
5191 6223 3.104843 GCCAGAGCTGACGAGATTTAT 57.895 47.619 0.00 0.00 35.50 1.40
5192 6224 3.462021 GCCAGAGCTGACGAGATTTATT 58.538 45.455 0.00 0.00 35.50 1.40
5193 6225 3.873952 GCCAGAGCTGACGAGATTTATTT 59.126 43.478 0.00 0.00 35.50 1.40
5194 6226 4.333926 GCCAGAGCTGACGAGATTTATTTT 59.666 41.667 0.00 0.00 35.50 1.82
5195 6227 5.163713 GCCAGAGCTGACGAGATTTATTTTT 60.164 40.000 0.00 0.00 35.50 1.94
5213 6245 3.844577 TTTTAAGGGACGAGAGACGAG 57.155 47.619 0.00 0.00 45.77 4.18
5214 6246 2.775911 TTAAGGGACGAGAGACGAGA 57.224 50.000 0.00 0.00 45.77 4.04
5215 6247 3.278668 TTAAGGGACGAGAGACGAGAT 57.721 47.619 0.00 0.00 45.77 2.75
5216 6248 1.384525 AAGGGACGAGAGACGAGATG 58.615 55.000 0.00 0.00 45.77 2.90
5217 6249 0.542333 AGGGACGAGAGACGAGATGA 59.458 55.000 0.00 0.00 45.77 2.92
5218 6250 1.065345 AGGGACGAGAGACGAGATGAA 60.065 52.381 0.00 0.00 45.77 2.57
5219 6251 1.743958 GGGACGAGAGACGAGATGAAA 59.256 52.381 0.00 0.00 45.77 2.69
5220 6252 2.359531 GGGACGAGAGACGAGATGAAAT 59.640 50.000 0.00 0.00 45.77 2.17
5221 6253 3.367607 GGACGAGAGACGAGATGAAATG 58.632 50.000 0.00 0.00 45.77 2.32
5222 6254 3.367607 GACGAGAGACGAGATGAAATGG 58.632 50.000 0.00 0.00 45.77 3.16
5223 6255 2.099921 ACGAGAGACGAGATGAAATGGG 59.900 50.000 0.00 0.00 45.77 4.00
5224 6256 2.544694 CGAGAGACGAGATGAAATGGGG 60.545 54.545 0.00 0.00 45.77 4.96
5225 6257 2.695666 GAGAGACGAGATGAAATGGGGA 59.304 50.000 0.00 0.00 0.00 4.81
5226 6258 2.697751 AGAGACGAGATGAAATGGGGAG 59.302 50.000 0.00 0.00 0.00 4.30
5227 6259 2.432510 GAGACGAGATGAAATGGGGAGT 59.567 50.000 0.00 0.00 0.00 3.85
5228 6260 3.637229 GAGACGAGATGAAATGGGGAGTA 59.363 47.826 0.00 0.00 0.00 2.59
5229 6261 3.639094 AGACGAGATGAAATGGGGAGTAG 59.361 47.826 0.00 0.00 0.00 2.57
5230 6262 3.637229 GACGAGATGAAATGGGGAGTAGA 59.363 47.826 0.00 0.00 0.00 2.59
5231 6263 4.227197 ACGAGATGAAATGGGGAGTAGAT 58.773 43.478 0.00 0.00 0.00 1.98
5232 6264 4.282195 ACGAGATGAAATGGGGAGTAGATC 59.718 45.833 0.00 0.00 0.00 2.75
5233 6265 4.617067 CGAGATGAAATGGGGAGTAGATCG 60.617 50.000 0.00 0.00 0.00 3.69
5234 6266 4.483950 AGATGAAATGGGGAGTAGATCGA 58.516 43.478 0.00 0.00 0.00 3.59
5235 6267 5.090139 AGATGAAATGGGGAGTAGATCGAT 58.910 41.667 0.00 0.00 0.00 3.59
5236 6268 4.607293 TGAAATGGGGAGTAGATCGATG 57.393 45.455 0.54 0.00 0.00 3.84
5237 6269 3.244215 TGAAATGGGGAGTAGATCGATGC 60.244 47.826 0.54 0.00 0.00 3.91
5238 6270 0.891373 ATGGGGAGTAGATCGATGCG 59.109 55.000 0.54 0.00 0.00 4.73
5239 6271 0.179001 TGGGGAGTAGATCGATGCGA 60.179 55.000 0.54 0.00 41.13 5.10
5249 6281 1.575244 ATCGATGCGATCCAGTGTTG 58.425 50.000 0.00 0.00 43.45 3.33
5250 6282 1.083806 TCGATGCGATCCAGTGTTGC 61.084 55.000 0.00 0.00 0.00 4.17
5251 6283 1.086067 CGATGCGATCCAGTGTTGCT 61.086 55.000 0.00 0.00 0.00 3.91
5252 6284 0.654683 GATGCGATCCAGTGTTGCTC 59.345 55.000 0.00 0.00 0.00 4.26
5253 6285 0.036105 ATGCGATCCAGTGTTGCTCA 60.036 50.000 0.00 0.00 0.00 4.26
5254 6286 0.036105 TGCGATCCAGTGTTGCTCAT 60.036 50.000 0.00 0.00 0.00 2.90
5255 6287 1.089920 GCGATCCAGTGTTGCTCATT 58.910 50.000 0.00 0.00 0.00 2.57
5256 6288 2.279741 GCGATCCAGTGTTGCTCATTA 58.720 47.619 0.00 0.00 0.00 1.90
5257 6289 2.677836 GCGATCCAGTGTTGCTCATTAA 59.322 45.455 0.00 0.00 0.00 1.40
5258 6290 3.485877 GCGATCCAGTGTTGCTCATTAAC 60.486 47.826 0.00 0.00 0.00 2.01
5259 6291 3.935203 CGATCCAGTGTTGCTCATTAACT 59.065 43.478 0.00 0.00 0.00 2.24
5260 6292 4.201753 CGATCCAGTGTTGCTCATTAACTG 60.202 45.833 0.00 0.00 38.36 3.16
5261 6293 2.813754 TCCAGTGTTGCTCATTAACTGC 59.186 45.455 0.00 0.00 37.51 4.40
5262 6294 2.095059 CCAGTGTTGCTCATTAACTGCC 60.095 50.000 0.00 0.00 37.51 4.85
5263 6295 2.095059 CAGTGTTGCTCATTAACTGCCC 60.095 50.000 0.00 0.00 32.61 5.36
5264 6296 2.162681 GTGTTGCTCATTAACTGCCCT 58.837 47.619 0.00 0.00 0.00 5.19
5265 6297 2.095059 GTGTTGCTCATTAACTGCCCTG 60.095 50.000 0.00 0.00 0.00 4.45
5266 6298 2.162681 GTTGCTCATTAACTGCCCTGT 58.837 47.619 0.00 0.00 0.00 4.00
5267 6299 2.558359 GTTGCTCATTAACTGCCCTGTT 59.442 45.455 0.00 0.00 0.00 3.16
5268 6300 2.161855 TGCTCATTAACTGCCCTGTTG 58.838 47.619 1.44 0.00 0.00 3.33
5269 6301 2.162681 GCTCATTAACTGCCCTGTTGT 58.837 47.619 1.44 0.00 0.00 3.32
5270 6302 2.558359 GCTCATTAACTGCCCTGTTGTT 59.442 45.455 1.44 0.00 0.00 2.83
5271 6303 3.005791 GCTCATTAACTGCCCTGTTGTTT 59.994 43.478 1.44 0.00 0.00 2.83
5272 6304 4.501400 GCTCATTAACTGCCCTGTTGTTTT 60.501 41.667 1.44 0.00 0.00 2.43
5273 6305 5.195001 TCATTAACTGCCCTGTTGTTTTC 57.805 39.130 1.44 0.00 0.00 2.29
5274 6306 4.892934 TCATTAACTGCCCTGTTGTTTTCT 59.107 37.500 1.44 0.00 0.00 2.52
5275 6307 6.065374 TCATTAACTGCCCTGTTGTTTTCTA 58.935 36.000 1.44 0.00 0.00 2.10
5276 6308 6.547880 TCATTAACTGCCCTGTTGTTTTCTAA 59.452 34.615 1.44 0.00 0.00 2.10
5277 6309 4.918810 AACTGCCCTGTTGTTTTCTAAG 57.081 40.909 0.00 0.00 0.00 2.18
5278 6310 2.623416 ACTGCCCTGTTGTTTTCTAAGC 59.377 45.455 0.00 0.00 0.00 3.09
5279 6311 2.622942 CTGCCCTGTTGTTTTCTAAGCA 59.377 45.455 0.00 0.00 0.00 3.91
5280 6312 3.230134 TGCCCTGTTGTTTTCTAAGCAT 58.770 40.909 0.00 0.00 0.00 3.79
5361 6395 8.581057 ACTATTCATGTCGAACATACATCTTC 57.419 34.615 0.00 0.00 36.53 2.87
5399 6436 5.930837 TCAGGTGACATTTTCAACCTTTT 57.069 34.783 0.00 0.00 43.93 2.27
5400 6437 6.293004 TCAGGTGACATTTTCAACCTTTTT 57.707 33.333 0.00 0.00 43.93 1.94
5443 6484 6.502158 TCTTCTTATTCTTGTTCTTCCTCCCT 59.498 38.462 0.00 0.00 0.00 4.20
5444 6485 6.054860 TCTTATTCTTGTTCTTCCTCCCTG 57.945 41.667 0.00 0.00 0.00 4.45
5445 6486 5.548056 TCTTATTCTTGTTCTTCCTCCCTGT 59.452 40.000 0.00 0.00 0.00 4.00
5471 6512 1.667236 CGCCTACAAATCCATGCTCA 58.333 50.000 0.00 0.00 0.00 4.26
5513 6554 6.543831 AGCTTGTTCTTTGAGTCACAAATACT 59.456 34.615 0.00 0.00 45.63 2.12
5539 6580 6.240549 TCTTCAAAATAAACCAAAAGGCCA 57.759 33.333 5.01 0.00 0.00 5.36
5628 6670 7.479916 CGAAAAAGTTCATCAACTAAGCATCTC 59.520 37.037 0.00 0.00 42.45 2.75
5630 6672 7.934855 AAAGTTCATCAACTAAGCATCTCAT 57.065 32.000 0.00 0.00 42.45 2.90
5633 6675 8.830201 AGTTCATCAACTAAGCATCTCATATC 57.170 34.615 0.00 0.00 41.39 1.63
5660 6702 8.275758 ACATGTCTATCTAGTTCCTGTAGAGAA 58.724 37.037 0.00 0.00 30.04 2.87
5669 6711 6.426646 AGTTCCTGTAGAGAAGAACACAAT 57.573 37.500 10.31 0.00 40.82 2.71
5677 6719 9.814899 CTGTAGAGAAGAACACAATCTATCATT 57.185 33.333 0.00 0.00 0.00 2.57
5785 6830 8.519526 AGATAATTTTGAACGGACATTAAAGCA 58.480 29.630 0.00 0.00 0.00 3.91
5845 6891 9.857656 AGAATAACACAATTAGTCCATGATGAT 57.142 29.630 0.00 0.00 0.00 2.45
5849 6895 7.943079 ACACAATTAGTCCATGATGATGAAA 57.057 32.000 0.00 0.00 0.00 2.69
5854 6900 7.798596 ATTAGTCCATGATGATGAAACAGTC 57.201 36.000 0.00 0.00 0.00 3.51
5889 6942 4.758688 TCTATTATATGACATGCAGCCGG 58.241 43.478 0.00 0.00 0.00 6.13
5902 6955 2.269172 GCAGCCGGTAGAAGTAAACTC 58.731 52.381 1.90 0.00 0.00 3.01
5909 6962 5.163478 GCCGGTAGAAGTAAACTCCAGATTA 60.163 44.000 1.90 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 7.883229 TTTGTCACAAGGAAAAGAAAACTTC 57.117 32.000 0.00 0.00 0.00 3.01
18 19 5.121611 GGTTTGGTTTTGTCACAAGGAAAAG 59.878 40.000 0.00 0.00 0.00 2.27
22 23 3.436243 AGGTTTGGTTTTGTCACAAGGA 58.564 40.909 0.00 0.00 0.00 3.36
52 53 3.463944 TCTCCGGAACTTGTTTCAGAAC 58.536 45.455 5.23 0.00 35.70 3.01
84 85 5.412904 GTGTCTCTTCTTTTATGGTGGAAGG 59.587 44.000 0.00 0.00 36.71 3.46
85 86 5.997746 TGTGTCTCTTCTTTTATGGTGGAAG 59.002 40.000 0.00 0.00 37.21 3.46
86 87 5.763204 GTGTGTCTCTTCTTTTATGGTGGAA 59.237 40.000 0.00 0.00 0.00 3.53
87 88 5.163248 TGTGTGTCTCTTCTTTTATGGTGGA 60.163 40.000 0.00 0.00 0.00 4.02
88 89 5.063204 TGTGTGTCTCTTCTTTTATGGTGG 58.937 41.667 0.00 0.00 0.00 4.61
92 93 7.171508 TGCTTACTGTGTGTCTCTTCTTTTATG 59.828 37.037 0.00 0.00 0.00 1.90
110 111 5.173774 TGCAAGAAAGAAAGTGCTTACTG 57.826 39.130 0.00 0.00 37.87 2.74
111 112 5.358160 AGTTGCAAGAAAGAAAGTGCTTACT 59.642 36.000 0.00 0.00 37.87 2.24
112 113 5.582550 AGTTGCAAGAAAGAAAGTGCTTAC 58.417 37.500 0.00 0.00 37.87 2.34
113 114 5.835113 AGTTGCAAGAAAGAAAGTGCTTA 57.165 34.783 0.00 0.00 37.87 3.09
114 115 4.725790 AGTTGCAAGAAAGAAAGTGCTT 57.274 36.364 0.00 0.00 37.87 3.91
115 116 4.725790 AAGTTGCAAGAAAGAAAGTGCT 57.274 36.364 0.00 0.00 37.87 4.40
116 117 6.920210 AGATAAAGTTGCAAGAAAGAAAGTGC 59.080 34.615 0.00 0.00 37.51 4.40
117 118 7.917505 ACAGATAAAGTTGCAAGAAAGAAAGTG 59.082 33.333 0.00 0.00 0.00 3.16
118 119 8.000780 ACAGATAAAGTTGCAAGAAAGAAAGT 57.999 30.769 0.00 0.00 0.00 2.66
119 120 8.749499 CAACAGATAAAGTTGCAAGAAAGAAAG 58.251 33.333 0.00 0.00 39.76 2.62
120 121 8.633075 CAACAGATAAAGTTGCAAGAAAGAAA 57.367 30.769 0.00 0.00 39.76 2.52
166 167 8.349983 GCTAATTGTTAAGAGGTTTGAAACTGA 58.650 33.333 8.09 0.00 0.00 3.41
167 168 7.323656 CGCTAATTGTTAAGAGGTTTGAAACTG 59.676 37.037 8.09 0.00 0.00 3.16
168 169 7.360361 CGCTAATTGTTAAGAGGTTTGAAACT 58.640 34.615 8.09 0.00 0.00 2.66
169 170 6.581166 CCGCTAATTGTTAAGAGGTTTGAAAC 59.419 38.462 0.00 0.00 0.00 2.78
170 171 6.487331 TCCGCTAATTGTTAAGAGGTTTGAAA 59.513 34.615 0.00 0.00 0.00 2.69
188 189 4.839121 AGTTGTGGAAATATGTCCGCTAA 58.161 39.130 23.19 14.15 46.54 3.09
189 190 4.439057 GAGTTGTGGAAATATGTCCGCTA 58.561 43.478 23.19 14.97 46.54 4.26
190 191 3.270877 GAGTTGTGGAAATATGTCCGCT 58.729 45.455 23.19 11.27 46.54 5.52
234 237 6.032717 CACGCTCTATATGGATGATGTACTG 58.967 44.000 0.00 0.00 0.00 2.74
357 788 2.860735 GACGACGATGGGAAATCTTGAG 59.139 50.000 0.00 0.00 0.00 3.02
403 1263 6.360618 AGATCCTGTTTGAGTCTTGTTTCTT 58.639 36.000 0.00 0.00 0.00 2.52
412 1272 3.923461 CACGAGAAGATCCTGTTTGAGTC 59.077 47.826 0.00 0.00 0.00 3.36
422 1282 0.179000 ACATGGCCACGAGAAGATCC 59.821 55.000 8.16 0.00 0.00 3.36
467 1327 7.736893 ACTAATCTTGGTATGTATGTTCCTCC 58.263 38.462 0.00 0.00 0.00 4.30
614 1476 8.474025 TCAGAAAGTTGTTGTGGAAATATGTTT 58.526 29.630 0.00 0.00 0.00 2.83
631 1493 6.989169 GGAGTATATGACTGCATCAGAAAGTT 59.011 38.462 0.29 0.00 45.51 2.66
632 1494 6.520272 GGAGTATATGACTGCATCAGAAAGT 58.480 40.000 0.29 0.00 45.51 2.66
658 1520 0.756903 ATCCAGTAATTCCGGACGGG 59.243 55.000 1.83 3.29 35.59 5.28
679 1541 1.682451 CCCTCCGTCCGGAATTGCTA 61.682 60.000 5.23 0.00 44.66 3.49
682 1571 1.144057 CTCCCTCCGTCCGGAATTG 59.856 63.158 5.23 0.00 44.66 2.32
689 1578 4.036144 GCGTATTATATACTCCCTCCGTCC 59.964 50.000 0.00 0.00 0.00 4.79
860 1749 1.298116 CAATGGCAGATGAAGCGCG 60.298 57.895 0.00 0.00 0.00 6.86
933 1829 6.399639 TGTTGTGTCTCAGTGATGTACTTA 57.600 37.500 0.00 0.00 37.60 2.24
934 1830 5.276461 TGTTGTGTCTCAGTGATGTACTT 57.724 39.130 0.00 0.00 37.60 2.24
935 1831 4.937201 TGTTGTGTCTCAGTGATGTACT 57.063 40.909 0.00 0.00 41.36 2.73
936 1832 6.017934 ACAATTGTTGTGTCTCAGTGATGTAC 60.018 38.462 4.92 0.00 43.48 2.90
1017 1913 1.968540 GAGCAAAGGACCAAGCGCT 60.969 57.895 2.64 2.64 0.00 5.92
1124 2020 5.178438 GTCTCAGTTTCAGTCTTGTGATTCC 59.822 44.000 0.00 0.00 0.00 3.01
1125 2021 5.988561 AGTCTCAGTTTCAGTCTTGTGATTC 59.011 40.000 0.00 0.00 0.00 2.52
1133 2029 5.819901 CCTTTCAAAGTCTCAGTTTCAGTCT 59.180 40.000 0.00 0.00 0.00 3.24
1154 2050 8.100791 TCTGTTTGATACTATGTAAGTTGCCTT 58.899 33.333 0.00 0.00 39.80 4.35
1155 2051 7.620880 TCTGTTTGATACTATGTAAGTTGCCT 58.379 34.615 0.00 0.00 39.80 4.75
1168 2064 7.497249 GCCATCTGTAATTCTCTGTTTGATACT 59.503 37.037 0.00 0.00 0.00 2.12
1171 2067 5.295292 CGCCATCTGTAATTCTCTGTTTGAT 59.705 40.000 0.00 0.00 0.00 2.57
1186 2082 1.755179 CCATTCCTTTCGCCATCTGT 58.245 50.000 0.00 0.00 0.00 3.41
1187 2083 0.383231 GCCATTCCTTTCGCCATCTG 59.617 55.000 0.00 0.00 0.00 2.90
1199 2095 1.308998 CGTTGGTATCAGGCCATTCC 58.691 55.000 5.01 0.00 35.71 3.01
1215 2111 2.558359 CCAATCCTTTGCTTCTTCCGTT 59.442 45.455 0.00 0.00 0.00 4.44
1321 2220 7.364673 GGTTTTATAGTTTCCCCAGCAATTCAT 60.365 37.037 0.00 0.00 0.00 2.57
1354 2259 0.604780 TGCACCTTCTCAGCTGCTTC 60.605 55.000 9.47 0.00 0.00 3.86
1372 2277 7.063191 GCTACTGATATATGTTCTCACAGCATG 59.937 40.741 0.00 0.00 46.00 4.06
1384 2289 6.463049 GGTTGAGGTGTGCTACTGATATATGT 60.463 42.308 0.00 0.00 0.00 2.29
1385 2290 5.928839 GGTTGAGGTGTGCTACTGATATATG 59.071 44.000 0.00 0.00 0.00 1.78
1404 2309 4.518249 TGCGTGTGATATTATTGGGTTGA 58.482 39.130 0.00 0.00 0.00 3.18
1406 2311 5.472137 GGTATGCGTGTGATATTATTGGGTT 59.528 40.000 0.00 0.00 0.00 4.11
1410 2315 5.700832 AGGTGGTATGCGTGTGATATTATTG 59.299 40.000 0.00 0.00 0.00 1.90
1411 2316 5.865085 AGGTGGTATGCGTGTGATATTATT 58.135 37.500 0.00 0.00 0.00 1.40
1417 2322 0.178068 GGAGGTGGTATGCGTGTGAT 59.822 55.000 0.00 0.00 0.00 3.06
1437 2342 3.010420 GGACAAATCTACAACAGGAGGC 58.990 50.000 0.00 0.00 0.00 4.70
1446 2351 3.007940 CAGAGTGGGTGGACAAATCTACA 59.992 47.826 0.00 0.00 38.05 2.74
1492 2397 5.049167 CCTGAGAGCATTGTTGAGAGTATC 58.951 45.833 0.00 0.00 0.00 2.24
1493 2398 4.469227 ACCTGAGAGCATTGTTGAGAGTAT 59.531 41.667 0.00 0.00 0.00 2.12
1514 2419 2.406616 CCCACTGCCGTAATGCACC 61.407 63.158 0.00 0.00 36.04 5.01
1526 2431 2.734755 TATTCCAATGGCTCCCACTG 57.265 50.000 0.00 0.00 35.80 3.66
1527 2432 2.158415 CCATATTCCAATGGCTCCCACT 60.158 50.000 0.00 0.00 40.07 4.00
1535 2449 2.446666 TCTGGACCCCATATTCCAATGG 59.553 50.000 0.00 0.00 45.20 3.16
1536 2450 3.882102 TCTGGACCCCATATTCCAATG 57.118 47.619 0.00 0.00 41.49 2.82
1583 2497 7.065563 CCTCAAGAAATGAATCGTTGATCTTCT 59.934 37.037 0.00 0.00 37.67 2.85
1584 2498 7.065085 TCCTCAAGAAATGAATCGTTGATCTTC 59.935 37.037 0.00 0.00 37.67 2.87
1590 2504 5.514204 GCATTCCTCAAGAAATGAATCGTTG 59.486 40.000 0.00 0.00 38.21 4.10
1594 2508 4.202192 GGGGCATTCCTCAAGAAATGAATC 60.202 45.833 0.00 0.00 38.21 2.52
1608 2522 3.007831 TGACAAAATCAAAGGGGCATTCC 59.992 43.478 0.00 0.00 33.02 3.01
1609 2523 4.270245 TGACAAAATCAAAGGGGCATTC 57.730 40.909 0.00 0.00 33.02 2.67
1611 2525 4.098894 AGATGACAAAATCAAAGGGGCAT 58.901 39.130 0.00 0.00 41.93 4.40
1624 2538 4.518970 GGAGGCTGTAACAAAGATGACAAA 59.481 41.667 0.00 0.00 0.00 2.83
1629 2543 3.438087 CACTGGAGGCTGTAACAAAGATG 59.562 47.826 0.00 0.00 0.00 2.90
1633 2547 3.126001 CTCACTGGAGGCTGTAACAAA 57.874 47.619 0.00 0.00 37.51 2.83
1647 2561 1.402984 GCTTGTACCGAGACCTCACTG 60.403 57.143 0.00 0.00 0.00 3.66
1653 2567 2.450609 TTTGAGCTTGTACCGAGACC 57.549 50.000 0.00 0.00 0.00 3.85
1654 2568 2.599082 CGATTTGAGCTTGTACCGAGAC 59.401 50.000 0.00 0.00 0.00 3.36
1655 2569 2.230508 ACGATTTGAGCTTGTACCGAGA 59.769 45.455 0.00 0.00 0.00 4.04
1657 2571 2.736144 ACGATTTGAGCTTGTACCGA 57.264 45.000 0.00 0.00 0.00 4.69
1662 2585 2.744202 CCTGCTTACGATTTGAGCTTGT 59.256 45.455 0.00 0.00 37.32 3.16
1675 2598 0.815734 TCTGTACGGAGCCTGCTTAC 59.184 55.000 0.00 0.00 0.00 2.34
1679 2602 2.202623 CGTCTGTACGGAGCCTGC 60.203 66.667 4.12 0.00 45.50 4.85
1691 2614 1.079819 ACATCAGGAACCGCGTCTG 60.080 57.895 4.92 7.48 0.00 3.51
1693 2616 2.100631 CCACATCAGGAACCGCGTC 61.101 63.158 4.92 0.00 0.00 5.19
1696 2619 1.971167 TTGCCACATCAGGAACCGC 60.971 57.895 0.00 0.00 0.00 5.68
1697 2620 0.606401 AGTTGCCACATCAGGAACCG 60.606 55.000 0.00 0.00 0.00 4.44
1699 2622 1.896220 TGAGTTGCCACATCAGGAAC 58.104 50.000 0.00 0.00 0.00 3.62
1700 2623 2.507484 CTTGAGTTGCCACATCAGGAA 58.493 47.619 0.00 0.00 0.00 3.36
1702 2625 0.524862 GCTTGAGTTGCCACATCAGG 59.475 55.000 0.00 0.00 0.00 3.86
1703 2626 1.531423 AGCTTGAGTTGCCACATCAG 58.469 50.000 0.00 0.00 0.00 2.90
1705 2628 1.740025 GGTAGCTTGAGTTGCCACATC 59.260 52.381 0.00 0.00 31.75 3.06
1711 2634 2.409948 ATCCTGGTAGCTTGAGTTGC 57.590 50.000 0.00 0.00 0.00 4.17
1714 2637 4.809193 TCAGATATCCTGGTAGCTTGAGT 58.191 43.478 0.00 0.00 43.12 3.41
1720 2643 3.323403 AGCAGTTCAGATATCCTGGTAGC 59.677 47.826 8.95 3.85 43.12 3.58
1721 2644 4.586421 TGAGCAGTTCAGATATCCTGGTAG 59.414 45.833 10.24 0.00 43.12 3.18
1722 2645 4.546674 TGAGCAGTTCAGATATCCTGGTA 58.453 43.478 10.24 0.44 43.12 3.25
1723 2646 3.378512 TGAGCAGTTCAGATATCCTGGT 58.621 45.455 10.10 10.10 43.12 4.00
1751 2674 4.751767 TCCACCAACAGCAGAAATTTTT 57.248 36.364 0.00 0.00 0.00 1.94
1754 2677 3.256631 GTCATCCACCAACAGCAGAAATT 59.743 43.478 0.00 0.00 0.00 1.82
1755 2678 2.821969 GTCATCCACCAACAGCAGAAAT 59.178 45.455 0.00 0.00 0.00 2.17
1780 2703 0.038251 TGAAGGTCTAGCTGCACACG 60.038 55.000 1.02 0.00 0.00 4.49
1784 2707 0.686789 TGCTTGAAGGTCTAGCTGCA 59.313 50.000 11.86 0.00 43.82 4.41
1786 2709 1.066286 AGCTGCTTGAAGGTCTAGCTG 60.066 52.381 11.86 11.93 43.82 4.24
1798 2721 3.689414 TGGAATGCCAGCTGCTTG 58.311 55.556 8.66 0.00 39.92 4.01
1805 2728 3.073503 TCCAAGAGGATATGGAATGCCAG 59.926 47.826 0.00 0.00 43.35 4.85
1816 2739 3.776969 ACTTGCACATCTCCAAGAGGATA 59.223 43.478 7.31 0.00 44.70 2.59
1829 2752 0.675633 GGCTTCCACAACTTGCACAT 59.324 50.000 0.00 0.00 0.00 3.21
1834 2757 2.919494 GCCCGGCTTCCACAACTTG 61.919 63.158 0.71 0.00 0.00 3.16
1836 2759 3.429372 TTGCCCGGCTTCCACAACT 62.429 57.895 11.61 0.00 0.00 3.16
1837 2760 2.909965 TTGCCCGGCTTCCACAAC 60.910 61.111 11.61 0.00 0.00 3.32
1838 2761 2.597217 CTTGCCCGGCTTCCACAA 60.597 61.111 11.61 0.00 0.00 3.33
1839 2762 2.920076 AAACTTGCCCGGCTTCCACA 62.920 55.000 11.61 0.00 0.00 4.17
1840 2763 2.142357 GAAACTTGCCCGGCTTCCAC 62.142 60.000 11.61 0.00 0.00 4.02
1841 2764 1.901464 GAAACTTGCCCGGCTTCCA 60.901 57.895 11.61 0.00 0.00 3.53
1842 2765 1.587043 GAGAAACTTGCCCGGCTTCC 61.587 60.000 11.61 0.00 0.00 3.46
1843 2766 1.876664 GAGAAACTTGCCCGGCTTC 59.123 57.895 11.61 5.99 0.00 3.86
1844 2767 1.966451 CGAGAAACTTGCCCGGCTT 60.966 57.895 11.61 0.00 0.00 4.35
1845 2768 2.358737 CGAGAAACTTGCCCGGCT 60.359 61.111 11.61 0.00 0.00 5.52
1846 2769 4.103103 GCGAGAAACTTGCCCGGC 62.103 66.667 1.04 1.04 35.00 6.13
1847 2770 2.358737 AGCGAGAAACTTGCCCGG 60.359 61.111 0.00 0.00 41.50 5.73
1848 2771 2.680913 CCAGCGAGAAACTTGCCCG 61.681 63.158 7.29 0.46 41.50 6.13
1849 2772 2.335712 CCCAGCGAGAAACTTGCCC 61.336 63.158 7.29 0.00 41.50 5.36
1850 2773 1.600916 ACCCAGCGAGAAACTTGCC 60.601 57.895 7.29 0.00 41.50 4.52
1851 2774 1.576421 CACCCAGCGAGAAACTTGC 59.424 57.895 3.10 3.10 40.93 4.01
1852 2775 1.576421 GCACCCAGCGAGAAACTTG 59.424 57.895 0.00 0.00 0.00 3.16
1853 2776 4.065110 GCACCCAGCGAGAAACTT 57.935 55.556 0.00 0.00 0.00 2.66
1862 2785 1.073897 ACTTTCCTCTGCACCCAGC 59.926 57.895 0.00 0.00 45.96 4.85
1863 2786 0.607489 CCACTTTCCTCTGCACCCAG 60.607 60.000 0.00 0.00 40.54 4.45
1864 2787 1.352622 ACCACTTTCCTCTGCACCCA 61.353 55.000 0.00 0.00 0.00 4.51
1865 2788 0.690762 TACCACTTTCCTCTGCACCC 59.309 55.000 0.00 0.00 0.00 4.61
1866 2789 1.348036 ACTACCACTTTCCTCTGCACC 59.652 52.381 0.00 0.00 0.00 5.01
1867 2790 2.037251 TGACTACCACTTTCCTCTGCAC 59.963 50.000 0.00 0.00 0.00 4.57
1868 2791 2.037251 GTGACTACCACTTTCCTCTGCA 59.963 50.000 0.00 0.00 42.44 4.41
1870 2793 4.021104 TGATGTGACTACCACTTTCCTCTG 60.021 45.833 0.00 0.00 45.86 3.35
1878 2801 6.544928 TGTGATATTGATGTGACTACCACT 57.455 37.500 0.00 0.00 45.86 4.00
1882 2805 8.613060 ATGGATTGTGATATTGATGTGACTAC 57.387 34.615 0.00 0.00 0.00 2.73
1885 2808 9.006839 ACATATGGATTGTGATATTGATGTGAC 57.993 33.333 7.80 0.00 0.00 3.67
1894 2817 9.614792 CATCAGATGACATATGGATTGTGATAT 57.385 33.333 10.07 0.00 0.00 1.63
1895 2818 8.044908 CCATCAGATGACATATGGATTGTGATA 58.955 37.037 12.41 0.00 41.20 2.15
1922 2845 6.273260 AGGCACATGTATATCCCTTTCTACAT 59.727 38.462 0.00 0.00 35.69 2.29
1926 2849 4.660303 TCAGGCACATGTATATCCCTTTCT 59.340 41.667 0.00 0.00 0.00 2.52
1929 2852 5.589367 AATCAGGCACATGTATATCCCTT 57.411 39.130 0.00 0.00 0.00 3.95
1931 2854 4.460382 CCAAATCAGGCACATGTATATCCC 59.540 45.833 0.00 0.00 0.00 3.85
1932 2855 4.460382 CCCAAATCAGGCACATGTATATCC 59.540 45.833 0.00 0.00 0.00 2.59
1933 2856 5.316167 TCCCAAATCAGGCACATGTATATC 58.684 41.667 0.00 0.00 0.00 1.63
1941 2864 0.329261 CCTCTCCCAAATCAGGCACA 59.671 55.000 0.00 0.00 0.00 4.57
1946 2869 3.212685 GCTTCATCCTCTCCCAAATCAG 58.787 50.000 0.00 0.00 0.00 2.90
1949 2872 2.681976 CGTGCTTCATCCTCTCCCAAAT 60.682 50.000 0.00 0.00 0.00 2.32
1955 2878 0.809241 CTGGCGTGCTTCATCCTCTC 60.809 60.000 0.00 0.00 0.00 3.20
1956 2879 1.220206 CTGGCGTGCTTCATCCTCT 59.780 57.895 0.00 0.00 0.00 3.69
1962 2885 0.100325 CAAACAACTGGCGTGCTTCA 59.900 50.000 0.00 0.00 0.00 3.02
1965 2888 1.943116 TTGCAAACAACTGGCGTGCT 61.943 50.000 0.00 0.00 36.18 4.40
1970 2893 4.880886 AATTCTTTTGCAAACAACTGGC 57.119 36.364 12.39 0.00 34.87 4.85
1975 2898 4.436584 CGCACCAAATTCTTTTGCAAACAA 60.437 37.500 12.39 8.27 40.77 2.83
1977 2900 3.606422 CGCACCAAATTCTTTTGCAAAC 58.394 40.909 12.39 0.00 40.77 2.93
1982 2905 1.794116 CCTGCGCACCAAATTCTTTTG 59.206 47.619 5.66 0.00 41.59 2.44
1984 2907 1.327303 TCCTGCGCACCAAATTCTTT 58.673 45.000 5.66 0.00 0.00 2.52
1987 2910 3.715628 AATATCCTGCGCACCAAATTC 57.284 42.857 5.66 0.00 0.00 2.17
1988 2911 5.789643 ATAAATATCCTGCGCACCAAATT 57.210 34.783 5.66 1.37 0.00 1.82
1989 2912 5.536161 AGAATAAATATCCTGCGCACCAAAT 59.464 36.000 5.66 0.00 0.00 2.32
2002 2925 7.493971 CCCGATGACAGGATCAGAATAAATATC 59.506 40.741 0.00 0.00 41.91 1.63
2005 2928 5.513788 CCCCGATGACAGGATCAGAATAAAT 60.514 44.000 0.00 0.00 41.91 1.40
2011 2934 1.402896 GCCCCGATGACAGGATCAGA 61.403 60.000 0.00 0.00 41.91 3.27
2019 2942 2.268920 GCAAGAGCCCCGATGACA 59.731 61.111 0.00 0.00 33.58 3.58
2020 2943 1.817099 CTGCAAGAGCCCCGATGAC 60.817 63.158 0.00 0.00 41.13 3.06
2037 2960 8.732746 TTTTTAGTTCTCTTACAAGTTGCTCT 57.267 30.769 1.81 0.00 0.00 4.09
2038 2961 7.588123 GCTTTTTAGTTCTCTTACAAGTTGCTC 59.412 37.037 1.81 0.00 0.00 4.26
2041 2964 7.857885 CAGGCTTTTTAGTTCTCTTACAAGTTG 59.142 37.037 0.00 0.00 0.00 3.16
2043 2966 6.017026 GCAGGCTTTTTAGTTCTCTTACAAGT 60.017 38.462 0.00 0.00 0.00 3.16
2046 2969 4.760204 GGCAGGCTTTTTAGTTCTCTTACA 59.240 41.667 0.00 0.00 0.00 2.41
2060 2983 2.811410 TCAAATCTGATGGCAGGCTTT 58.189 42.857 0.00 0.00 42.53 3.51
2061 2984 2.519771 TCAAATCTGATGGCAGGCTT 57.480 45.000 0.00 0.00 42.53 4.35
2062 2985 2.750141 ATCAAATCTGATGGCAGGCT 57.250 45.000 0.00 0.00 40.94 4.58
2066 2989 5.469760 CCATAACGTATCAAATCTGATGGCA 59.530 40.000 0.00 0.00 42.48 4.92
2067 2990 5.106555 CCCATAACGTATCAAATCTGATGGC 60.107 44.000 0.00 0.00 42.48 4.40
2076 2999 6.261381 GCATTACCTTCCCATAACGTATCAAA 59.739 38.462 0.00 0.00 0.00 2.69
2077 3000 5.761234 GCATTACCTTCCCATAACGTATCAA 59.239 40.000 0.00 0.00 0.00 2.57
2084 3007 4.532834 TCCTTGCATTACCTTCCCATAAC 58.467 43.478 0.00 0.00 0.00 1.89
2087 3010 3.756082 TTCCTTGCATTACCTTCCCAT 57.244 42.857 0.00 0.00 0.00 4.00
2088 3011 3.756082 ATTCCTTGCATTACCTTCCCA 57.244 42.857 0.00 0.00 0.00 4.37
2095 3018 8.778358 CCTTACATCTCTTATTCCTTGCATTAC 58.222 37.037 0.00 0.00 0.00 1.89
2097 3020 6.264067 GCCTTACATCTCTTATTCCTTGCATT 59.736 38.462 0.00 0.00 0.00 3.56
2102 3025 4.409247 ACCGCCTTACATCTCTTATTCCTT 59.591 41.667 0.00 0.00 0.00 3.36
2104 3027 4.058817 CACCGCCTTACATCTCTTATTCC 58.941 47.826 0.00 0.00 0.00 3.01
2108 3031 1.138266 GCCACCGCCTTACATCTCTTA 59.862 52.381 0.00 0.00 0.00 2.10
2109 3032 0.107654 GCCACCGCCTTACATCTCTT 60.108 55.000 0.00 0.00 0.00 2.85
2113 3036 0.392461 TCTTGCCACCGCCTTACATC 60.392 55.000 0.00 0.00 0.00 3.06
2117 3040 1.748879 GCATCTTGCCACCGCCTTA 60.749 57.895 0.00 0.00 37.42 2.69
2123 3046 2.546778 CATCAATTGCATCTTGCCACC 58.453 47.619 0.00 0.00 44.23 4.61
2135 3058 3.119531 TGCTTTCCTTACGGCATCAATTG 60.120 43.478 0.00 0.00 0.00 2.32
2136 3059 3.088532 TGCTTTCCTTACGGCATCAATT 58.911 40.909 0.00 0.00 0.00 2.32
2145 3068 2.803956 TCGAAGGTTTGCTTTCCTTACG 59.196 45.455 6.81 10.86 43.12 3.18
2150 3073 1.269723 CCCTTCGAAGGTTTGCTTTCC 59.730 52.381 35.89 0.00 44.98 3.13
2153 3076 1.605753 GTCCCTTCGAAGGTTTGCTT 58.394 50.000 35.89 0.00 44.98 3.91
2155 3078 1.574702 CCGTCCCTTCGAAGGTTTGC 61.575 60.000 35.89 22.90 44.98 3.68
2168 3091 0.464916 ATTTAATGGGTCGCCGTCCC 60.465 55.000 12.75 12.75 44.81 4.46
2172 3095 1.474879 ACCAAATTTAATGGGTCGCCG 59.525 47.619 0.00 0.00 42.48 6.46
2173 3096 4.158949 ACTTACCAAATTTAATGGGTCGCC 59.841 41.667 5.06 0.00 42.48 5.54
2174 3097 5.319140 ACTTACCAAATTTAATGGGTCGC 57.681 39.130 5.06 0.00 42.48 5.19
2188 3111 9.772973 ATGAGCGTTGATATAAATACTTACCAA 57.227 29.630 0.00 0.00 0.00 3.67
2201 3124 9.669353 GACAATATGAAAAATGAGCGTTGATAT 57.331 29.630 0.00 0.00 0.00 1.63
2202 3125 7.850492 CGACAATATGAAAAATGAGCGTTGATA 59.150 33.333 0.00 0.00 0.00 2.15
2206 3129 5.938322 ACGACAATATGAAAAATGAGCGTT 58.062 33.333 0.00 0.00 0.00 4.84
2209 3132 8.226543 TCAAAACGACAATATGAAAAATGAGC 57.773 30.769 0.00 0.00 0.00 4.26
2247 3179 7.523052 GCCTTCAAGGACAAATAACACACATAA 60.523 37.037 7.98 0.00 37.67 1.90
2252 3184 3.252215 CGCCTTCAAGGACAAATAACACA 59.748 43.478 7.98 0.00 37.67 3.72
2253 3185 3.365969 CCGCCTTCAAGGACAAATAACAC 60.366 47.826 7.98 0.00 37.67 3.32
2262 3194 1.892209 TCTTTTCCGCCTTCAAGGAC 58.108 50.000 7.98 0.00 37.67 3.85
2264 3196 2.558359 ACAATCTTTTCCGCCTTCAAGG 59.442 45.455 0.00 0.00 38.80 3.61
2265 3197 3.253188 TCACAATCTTTTCCGCCTTCAAG 59.747 43.478 0.00 0.00 0.00 3.02
2266 3198 3.218453 TCACAATCTTTTCCGCCTTCAA 58.782 40.909 0.00 0.00 0.00 2.69
2287 3221 4.825422 TCTGTCGCATTCTTGAGATTTCT 58.175 39.130 0.00 0.00 34.06 2.52
2291 3225 4.180057 GTCTTCTGTCGCATTCTTGAGAT 58.820 43.478 0.00 0.00 34.06 2.75
2296 3230 2.300152 TCAGGTCTTCTGTCGCATTCTT 59.700 45.455 0.00 0.00 43.76 2.52
2299 3233 2.839486 TTCAGGTCTTCTGTCGCATT 57.161 45.000 0.00 0.00 43.76 3.56
2302 3236 0.723981 GCATTCAGGTCTTCTGTCGC 59.276 55.000 0.00 0.00 43.76 5.19
2304 3238 2.479566 TGGCATTCAGGTCTTCTGTC 57.520 50.000 0.00 0.00 43.76 3.51
2307 3241 1.005215 CCCTTGGCATTCAGGTCTTCT 59.995 52.381 3.17 0.00 0.00 2.85
2314 3248 0.332632 TCCTTCCCCTTGGCATTCAG 59.667 55.000 0.00 0.00 0.00 3.02
2318 3252 0.259938 GACATCCTTCCCCTTGGCAT 59.740 55.000 0.00 0.00 0.00 4.40
2319 3253 1.691219 GACATCCTTCCCCTTGGCA 59.309 57.895 0.00 0.00 0.00 4.92
2322 3256 0.034089 GGTGGACATCCTTCCCCTTG 60.034 60.000 0.00 0.00 34.33 3.61
2325 3259 2.590092 CGGTGGACATCCTTCCCC 59.410 66.667 0.00 0.00 34.33 4.81
2326 3260 2.590092 CCGGTGGACATCCTTCCC 59.410 66.667 0.00 0.00 34.33 3.97
2327 3261 1.972660 CTCCCGGTGGACATCCTTCC 61.973 65.000 0.00 1.57 35.03 3.46
2328 3262 0.976073 TCTCCCGGTGGACATCCTTC 60.976 60.000 0.00 0.00 35.03 3.46
2338 3272 3.606662 ATCCGCGATCTCCCGGTG 61.607 66.667 8.23 0.00 44.63 4.94
2339 3273 3.606662 CATCCGCGATCTCCCGGT 61.607 66.667 8.23 0.00 44.63 5.28
2342 3276 2.356793 CAGCATCCGCGATCTCCC 60.357 66.667 8.23 0.00 45.49 4.30
2344 3278 2.021039 GCTCAGCATCCGCGATCTC 61.021 63.158 8.23 0.00 45.49 2.75
2349 3283 1.519234 TTGTAGCTCAGCATCCGCG 60.519 57.895 0.00 0.00 45.49 6.46
2350 3284 0.740868 TGTTGTAGCTCAGCATCCGC 60.741 55.000 0.00 0.00 32.57 5.54
2351 3285 1.945387 ATGTTGTAGCTCAGCATCCG 58.055 50.000 0.00 0.00 42.75 4.18
2353 3287 8.397906 TGTTTTATTATGTTGTAGCTCAGCATC 58.602 33.333 15.10 0.00 42.75 3.91
2363 3297 9.613957 CATTCGTTGGTGTTTTATTATGTTGTA 57.386 29.630 0.00 0.00 0.00 2.41
2365 3299 8.735303 TCATTCGTTGGTGTTTTATTATGTTG 57.265 30.769 0.00 0.00 0.00 3.33
2368 3302 6.472163 GCCTCATTCGTTGGTGTTTTATTATG 59.528 38.462 0.00 0.00 0.00 1.90
2369 3303 6.560711 GCCTCATTCGTTGGTGTTTTATTAT 58.439 36.000 0.00 0.00 0.00 1.28
2370 3304 5.391097 CGCCTCATTCGTTGGTGTTTTATTA 60.391 40.000 0.00 0.00 0.00 0.98
2373 3307 2.224549 CGCCTCATTCGTTGGTGTTTTA 59.775 45.455 0.00 0.00 0.00 1.52
2377 3311 0.250124 TTCGCCTCATTCGTTGGTGT 60.250 50.000 0.00 0.00 33.50 4.16
2378 3312 0.871722 TTTCGCCTCATTCGTTGGTG 59.128 50.000 0.00 0.00 0.00 4.17
2379 3313 1.535462 CTTTTCGCCTCATTCGTTGGT 59.465 47.619 0.00 0.00 0.00 3.67
2380 3314 1.804151 TCTTTTCGCCTCATTCGTTGG 59.196 47.619 0.00 0.00 0.00 3.77
2385 3319 2.019984 AGCCATCTTTTCGCCTCATTC 58.980 47.619 0.00 0.00 0.00 2.67
2394 3328 4.122046 ACACTTTTTGCAGCCATCTTTTC 58.878 39.130 0.00 0.00 0.00 2.29
2395 3329 4.141233 ACACTTTTTGCAGCCATCTTTT 57.859 36.364 0.00 0.00 0.00 2.27
2397 3331 6.015519 TGTTATACACTTTTTGCAGCCATCTT 60.016 34.615 0.00 0.00 0.00 2.40
2442 3376 0.741221 GCCTGGAACCGTGAGACATC 60.741 60.000 0.00 0.00 0.00 3.06
2445 3379 1.374758 CTGCCTGGAACCGTGAGAC 60.375 63.158 0.00 0.00 0.00 3.36
2449 3383 0.817634 TTCAACTGCCTGGAACCGTG 60.818 55.000 0.00 0.00 0.00 4.94
2450 3384 0.535102 CTTCAACTGCCTGGAACCGT 60.535 55.000 0.00 0.00 0.00 4.83
2451 3385 0.250295 TCTTCAACTGCCTGGAACCG 60.250 55.000 0.00 0.00 0.00 4.44
2453 3387 1.815003 CCATCTTCAACTGCCTGGAAC 59.185 52.381 0.00 0.00 0.00 3.62
2454 3388 1.704628 TCCATCTTCAACTGCCTGGAA 59.295 47.619 0.00 0.00 30.15 3.53
2456 3390 2.022195 CATCCATCTTCAACTGCCTGG 58.978 52.381 0.00 0.00 0.00 4.45
2457 3391 2.719739 ACATCCATCTTCAACTGCCTG 58.280 47.619 0.00 0.00 0.00 4.85
2459 3393 3.378427 GGTAACATCCATCTTCAACTGCC 59.622 47.826 0.00 0.00 0.00 4.85
2460 3394 4.009675 TGGTAACATCCATCTTCAACTGC 58.990 43.478 0.00 0.00 46.17 4.40
2528 3462 5.995282 TCAACAACAATAGTACTGGGACAAG 59.005 40.000 5.39 0.00 38.70 3.16
2542 3476 3.243839 GGTGGCATTGACTCAACAACAAT 60.244 43.478 0.00 0.00 35.10 2.71
2546 3480 2.229792 GAGGTGGCATTGACTCAACAA 58.770 47.619 0.00 0.00 0.00 2.83
2547 3481 1.545428 GGAGGTGGCATTGACTCAACA 60.545 52.381 11.61 0.00 0.00 3.33
2571 3505 1.211457 GATGGACCAGGCATCTCTTGT 59.789 52.381 0.00 0.00 0.00 3.16
2721 3655 1.640149 TCCATGCCCTCTCCAAATGAA 59.360 47.619 0.00 0.00 0.00 2.57
2774 3708 1.543429 CCTTTTCCACCGAGCACTCTT 60.543 52.381 0.00 0.00 0.00 2.85
2802 3736 5.803967 CAGCTTGAACCTTTCTATGATTTGC 59.196 40.000 0.00 0.00 0.00 3.68
2828 3762 3.560068 ACGACTTTTAGAACCACTGCTTG 59.440 43.478 0.00 0.00 0.00 4.01
2832 3766 4.624015 TGGTACGACTTTTAGAACCACTG 58.376 43.478 0.00 0.00 32.24 3.66
2845 3788 8.631480 TTCATGTACTCATATATGGTACGACT 57.369 34.615 24.24 15.88 37.31 4.18
2928 3871 4.141041 CCAAGGGGATATGGTATTCCAACA 60.141 45.833 0.00 0.00 41.47 3.33
2934 3877 4.731929 ACACTTCCAAGGGGATATGGTATT 59.268 41.667 0.00 0.00 44.48 1.89
3009 3952 1.533625 TCTTCACCTTCATTTGGCCG 58.466 50.000 0.00 0.00 0.00 6.13
3125 4071 7.667575 TCCTTCATAAGTTCTCTAGCAAGAT 57.332 36.000 0.00 0.00 0.00 2.40
3244 4193 2.089980 GTCCTCAGTGCAGCATGATTT 58.910 47.619 0.00 0.00 39.69 2.17
3270 4219 5.491078 AGTTTCCATACCCAGTTCTATTGGA 59.509 40.000 0.00 0.00 37.96 3.53
3620 4569 5.078949 TCCATTTGTCATTGTTCTCACCAT 58.921 37.500 0.00 0.00 0.00 3.55
3674 4623 8.866956 CAGCTTTGTTTGAAAGGATAATGATTC 58.133 33.333 0.00 0.00 0.00 2.52
3677 4626 7.231317 ACTCAGCTTTGTTTGAAAGGATAATGA 59.769 33.333 0.00 0.00 0.00 2.57
3678 4627 7.327761 CACTCAGCTTTGTTTGAAAGGATAATG 59.672 37.037 0.00 0.00 0.00 1.90
3690 4640 2.555757 GGAGATGCACTCAGCTTTGTTT 59.444 45.455 15.22 0.00 46.54 2.83
3853 4806 4.322801 CGGTATCCTCTTGAGGTTGTTTCT 60.323 45.833 15.44 0.00 0.00 2.52
3953 4906 6.019108 AGGTTGATAAGCTTTCCAAAGGATT 58.981 36.000 3.20 0.00 35.27 3.01
4024 4977 6.697641 TTTAAGTCTAGAAATGACCCCACT 57.302 37.500 0.00 0.00 35.21 4.00
4025 4978 5.354513 GCTTTAAGTCTAGAAATGACCCCAC 59.645 44.000 0.00 0.00 35.21 4.61
4107 5072 1.911702 GAGGTAGGGTGCCCAACTCC 61.912 65.000 10.26 6.07 38.92 3.85
4170 5135 2.739379 GTTTGCTGCTTCTAGTGACTCC 59.261 50.000 0.00 0.00 0.00 3.85
4406 5377 8.239038 TCTCAAGGATCTCGTCATAGTTAAAT 57.761 34.615 0.00 0.00 0.00 1.40
4407 5378 7.556635 TCTCTCAAGGATCTCGTCATAGTTAAA 59.443 37.037 0.00 0.00 0.00 1.52
4480 5451 6.985645 TGGCACATAATCAATTCCAAATAAGC 59.014 34.615 0.00 0.00 0.00 3.09
4495 5466 5.221303 GGTGCAATAGATGTTGGCACATAAT 60.221 40.000 15.74 0.00 44.22 1.28
4755 5726 1.457346 AAGGAAGCCTCTTCAATGCG 58.543 50.000 8.59 0.00 30.89 4.73
4789 5760 1.007387 CCTTCAACTTTGGCGGCAC 60.007 57.895 12.92 0.00 0.00 5.01
4794 5765 1.464997 CGTAGCTCCTTCAACTTTGGC 59.535 52.381 0.00 0.00 0.00 4.52
4801 5772 3.007506 TCATCAAACCGTAGCTCCTTCAA 59.992 43.478 0.00 0.00 0.00 2.69
4932 5960 2.288666 TCATACAAATCAGCTTCGCCC 58.711 47.619 0.00 0.00 0.00 6.13
4933 5961 4.558538 AATCATACAAATCAGCTTCGCC 57.441 40.909 0.00 0.00 0.00 5.54
4934 5962 6.292389 ACTAATCATACAAATCAGCTTCGC 57.708 37.500 0.00 0.00 0.00 4.70
4935 5963 8.581057 ACTACTAATCATACAAATCAGCTTCG 57.419 34.615 0.00 0.00 0.00 3.79
4977 6005 9.836864 AGAAAGCAACATCTATTACATACATCA 57.163 29.630 0.00 0.00 0.00 3.07
4979 6007 9.277783 GGAGAAAGCAACATCTATTACATACAT 57.722 33.333 0.00 0.00 0.00 2.29
4980 6008 8.486210 AGGAGAAAGCAACATCTATTACATACA 58.514 33.333 0.00 0.00 0.00 2.29
4981 6009 8.768955 CAGGAGAAAGCAACATCTATTACATAC 58.231 37.037 0.00 0.00 0.00 2.39
4982 6010 7.933577 CCAGGAGAAAGCAACATCTATTACATA 59.066 37.037 0.00 0.00 0.00 2.29
4987 6015 3.950395 GCCAGGAGAAAGCAACATCTATT 59.050 43.478 0.00 0.00 0.00 1.73
4988 6016 3.054139 TGCCAGGAGAAAGCAACATCTAT 60.054 43.478 0.00 0.00 32.56 1.98
5095 6127 2.162681 GCAAAGGAAGGCATGTACAGT 58.837 47.619 0.33 0.00 0.00 3.55
5106 6138 1.210155 CCGCCGAAAGCAAAGGAAG 59.790 57.895 0.00 0.00 44.04 3.46
5152 6184 3.571828 TGGCTGCAGCAACAAGTTTTATA 59.428 39.130 37.63 6.38 44.36 0.98
5192 6224 3.822735 TCTCGTCTCTCGTCCCTTAAAAA 59.177 43.478 0.00 0.00 40.80 1.94
5193 6225 3.415212 TCTCGTCTCTCGTCCCTTAAAA 58.585 45.455 0.00 0.00 40.80 1.52
5194 6226 3.063510 TCTCGTCTCTCGTCCCTTAAA 57.936 47.619 0.00 0.00 40.80 1.52
5195 6227 2.775911 TCTCGTCTCTCGTCCCTTAA 57.224 50.000 0.00 0.00 40.80 1.85
5196 6228 2.169978 TCATCTCGTCTCTCGTCCCTTA 59.830 50.000 0.00 0.00 40.80 2.69
5197 6229 1.065345 TCATCTCGTCTCTCGTCCCTT 60.065 52.381 0.00 0.00 40.80 3.95
5198 6230 0.542333 TCATCTCGTCTCTCGTCCCT 59.458 55.000 0.00 0.00 40.80 4.20
5199 6231 1.380524 TTCATCTCGTCTCTCGTCCC 58.619 55.000 0.00 0.00 40.80 4.46
5200 6232 3.367607 CATTTCATCTCGTCTCTCGTCC 58.632 50.000 0.00 0.00 40.80 4.79
5201 6233 3.367607 CCATTTCATCTCGTCTCTCGTC 58.632 50.000 0.00 0.00 40.80 4.20
5202 6234 2.099921 CCCATTTCATCTCGTCTCTCGT 59.900 50.000 0.00 0.00 40.80 4.18
5203 6235 2.544694 CCCCATTTCATCTCGTCTCTCG 60.545 54.545 0.00 0.00 41.41 4.04
5204 6236 2.695666 TCCCCATTTCATCTCGTCTCTC 59.304 50.000 0.00 0.00 0.00 3.20
5205 6237 2.697751 CTCCCCATTTCATCTCGTCTCT 59.302 50.000 0.00 0.00 0.00 3.10
5206 6238 2.432510 ACTCCCCATTTCATCTCGTCTC 59.567 50.000 0.00 0.00 0.00 3.36
5207 6239 2.472029 ACTCCCCATTTCATCTCGTCT 58.528 47.619 0.00 0.00 0.00 4.18
5208 6240 2.990066 ACTCCCCATTTCATCTCGTC 57.010 50.000 0.00 0.00 0.00 4.20
5209 6241 3.643237 TCTACTCCCCATTTCATCTCGT 58.357 45.455 0.00 0.00 0.00 4.18
5210 6242 4.617067 CGATCTACTCCCCATTTCATCTCG 60.617 50.000 0.00 0.00 0.00 4.04
5211 6243 4.524714 TCGATCTACTCCCCATTTCATCTC 59.475 45.833 0.00 0.00 0.00 2.75
5212 6244 4.483950 TCGATCTACTCCCCATTTCATCT 58.516 43.478 0.00 0.00 0.00 2.90
5213 6245 4.873746 TCGATCTACTCCCCATTTCATC 57.126 45.455 0.00 0.00 0.00 2.92
5214 6246 4.564406 GCATCGATCTACTCCCCATTTCAT 60.564 45.833 0.00 0.00 0.00 2.57
5215 6247 3.244215 GCATCGATCTACTCCCCATTTCA 60.244 47.826 0.00 0.00 0.00 2.69
5216 6248 3.330267 GCATCGATCTACTCCCCATTTC 58.670 50.000 0.00 0.00 0.00 2.17
5217 6249 2.289072 CGCATCGATCTACTCCCCATTT 60.289 50.000 0.00 0.00 0.00 2.32
5218 6250 1.273606 CGCATCGATCTACTCCCCATT 59.726 52.381 0.00 0.00 0.00 3.16
5219 6251 0.891373 CGCATCGATCTACTCCCCAT 59.109 55.000 0.00 0.00 0.00 4.00
5220 6252 0.179001 TCGCATCGATCTACTCCCCA 60.179 55.000 0.00 0.00 0.00 4.96
5221 6253 1.178276 ATCGCATCGATCTACTCCCC 58.822 55.000 0.00 0.00 43.45 4.81
5231 6263 1.083806 GCAACACTGGATCGCATCGA 61.084 55.000 0.00 0.00 41.13 3.59
5232 6264 1.086067 AGCAACACTGGATCGCATCG 61.086 55.000 0.00 0.00 0.00 3.84
5233 6265 0.654683 GAGCAACACTGGATCGCATC 59.345 55.000 0.00 0.00 0.00 3.91
5234 6266 0.036105 TGAGCAACACTGGATCGCAT 60.036 50.000 0.00 0.00 0.00 4.73
5235 6267 0.036105 ATGAGCAACACTGGATCGCA 60.036 50.000 0.00 0.00 0.00 5.10
5236 6268 1.089920 AATGAGCAACACTGGATCGC 58.910 50.000 0.00 0.00 0.00 4.58
5237 6269 3.935203 AGTTAATGAGCAACACTGGATCG 59.065 43.478 0.00 0.00 0.00 3.69
5238 6270 4.437930 GCAGTTAATGAGCAACACTGGATC 60.438 45.833 0.00 0.00 0.00 3.36
5239 6271 3.441572 GCAGTTAATGAGCAACACTGGAT 59.558 43.478 0.00 0.00 0.00 3.41
5240 6272 2.813754 GCAGTTAATGAGCAACACTGGA 59.186 45.455 0.00 0.00 0.00 3.86
5241 6273 2.095059 GGCAGTTAATGAGCAACACTGG 60.095 50.000 0.00 0.00 0.00 4.00
5242 6274 2.095059 GGGCAGTTAATGAGCAACACTG 60.095 50.000 0.00 0.00 0.00 3.66
5243 6275 2.162681 GGGCAGTTAATGAGCAACACT 58.837 47.619 0.00 0.00 0.00 3.55
5244 6276 2.095059 CAGGGCAGTTAATGAGCAACAC 60.095 50.000 0.00 0.00 0.00 3.32
5245 6277 2.161855 CAGGGCAGTTAATGAGCAACA 58.838 47.619 0.00 0.00 0.00 3.33
5246 6278 2.162681 ACAGGGCAGTTAATGAGCAAC 58.837 47.619 0.00 0.00 0.00 4.17
5247 6279 2.557924 CAACAGGGCAGTTAATGAGCAA 59.442 45.455 0.00 0.00 0.00 3.91
5248 6280 2.161855 CAACAGGGCAGTTAATGAGCA 58.838 47.619 0.00 0.00 0.00 4.26
5249 6281 2.162681 ACAACAGGGCAGTTAATGAGC 58.837 47.619 0.00 0.00 0.00 4.26
5250 6282 4.853924 AAACAACAGGGCAGTTAATGAG 57.146 40.909 0.00 0.00 0.00 2.90
5251 6283 4.892934 AGAAAACAACAGGGCAGTTAATGA 59.107 37.500 0.00 0.00 0.00 2.57
5252 6284 5.200368 AGAAAACAACAGGGCAGTTAATG 57.800 39.130 0.00 0.00 0.00 1.90
5253 6285 6.516693 GCTTAGAAAACAACAGGGCAGTTAAT 60.517 38.462 0.00 0.00 0.00 1.40
5254 6286 5.221165 GCTTAGAAAACAACAGGGCAGTTAA 60.221 40.000 0.00 0.00 0.00 2.01
5255 6287 4.277423 GCTTAGAAAACAACAGGGCAGTTA 59.723 41.667 0.00 0.00 0.00 2.24
5256 6288 3.068165 GCTTAGAAAACAACAGGGCAGTT 59.932 43.478 0.00 0.00 0.00 3.16
5257 6289 2.623416 GCTTAGAAAACAACAGGGCAGT 59.377 45.455 0.00 0.00 0.00 4.40
5258 6290 2.622942 TGCTTAGAAAACAACAGGGCAG 59.377 45.455 0.00 0.00 0.00 4.85
5259 6291 2.660572 TGCTTAGAAAACAACAGGGCA 58.339 42.857 0.00 0.00 0.00 5.36
5260 6292 3.255642 TGATGCTTAGAAAACAACAGGGC 59.744 43.478 0.00 0.00 0.00 5.19
5261 6293 4.520492 AGTGATGCTTAGAAAACAACAGGG 59.480 41.667 0.00 0.00 0.00 4.45
5262 6294 5.695851 AGTGATGCTTAGAAAACAACAGG 57.304 39.130 0.00 0.00 0.00 4.00
5263 6295 6.428159 ACCTAGTGATGCTTAGAAAACAACAG 59.572 38.462 0.00 0.00 0.00 3.16
5264 6296 6.204688 CACCTAGTGATGCTTAGAAAACAACA 59.795 38.462 0.00 0.00 35.23 3.33
5265 6297 6.426937 TCACCTAGTGATGCTTAGAAAACAAC 59.573 38.462 0.00 0.00 37.67 3.32
5266 6298 6.530120 TCACCTAGTGATGCTTAGAAAACAA 58.470 36.000 0.00 0.00 37.67 2.83
5267 6299 6.109156 TCACCTAGTGATGCTTAGAAAACA 57.891 37.500 0.00 0.00 37.67 2.83
5268 6300 7.467623 CATTCACCTAGTGATGCTTAGAAAAC 58.532 38.462 0.00 0.00 42.40 2.43
5269 6301 6.094048 GCATTCACCTAGTGATGCTTAGAAAA 59.906 38.462 17.34 0.00 42.40 2.29
5270 6302 5.586243 GCATTCACCTAGTGATGCTTAGAAA 59.414 40.000 17.34 0.00 42.40 2.52
5271 6303 5.118990 GCATTCACCTAGTGATGCTTAGAA 58.881 41.667 17.34 0.00 42.40 2.10
5272 6304 4.443457 GGCATTCACCTAGTGATGCTTAGA 60.443 45.833 20.80 0.75 42.40 2.10
5273 6305 3.812053 GGCATTCACCTAGTGATGCTTAG 59.188 47.826 20.80 0.00 42.40 2.18
5274 6306 3.433598 GGGCATTCACCTAGTGATGCTTA 60.434 47.826 20.80 1.87 42.40 3.09
5275 6307 2.648059 GGCATTCACCTAGTGATGCTT 58.352 47.619 20.80 0.00 42.40 3.91
5276 6308 1.133976 GGGCATTCACCTAGTGATGCT 60.134 52.381 20.80 2.40 42.40 3.79
5277 6309 1.312815 GGGCATTCACCTAGTGATGC 58.687 55.000 16.79 16.79 42.40 3.91
5278 6310 2.715749 TGGGCATTCACCTAGTGATG 57.284 50.000 0.00 1.45 42.40 3.07
5279 6311 2.750807 GCATGGGCATTCACCTAGTGAT 60.751 50.000 0.00 0.00 40.20 3.06
5280 6312 1.408683 GCATGGGCATTCACCTAGTGA 60.409 52.381 0.00 0.00 39.39 3.41
5361 6395 4.756642 TCACCTGAAGTGCATTAGAACTTG 59.243 41.667 0.00 0.00 43.88 3.16
5443 6484 2.614481 GGATTTGTAGGCGGAGACAACA 60.614 50.000 0.00 0.00 39.87 3.33
5444 6485 2.007608 GGATTTGTAGGCGGAGACAAC 58.992 52.381 0.00 0.00 39.87 3.32
5445 6486 1.626321 TGGATTTGTAGGCGGAGACAA 59.374 47.619 0.00 0.00 39.87 3.18
5471 6512 0.753262 GCTGTATCGATGGAGGTGGT 59.247 55.000 8.54 0.00 0.00 4.16
5513 6554 8.432805 TGGCCTTTTGGTTTATTTTGAAGAATA 58.567 29.630 3.32 0.00 42.99 1.75
5539 6580 7.287696 CCTTTTCCTTACATGCTGGGTATAATT 59.712 37.037 0.00 0.00 0.00 1.40
5601 6643 5.212194 TGCTTAGTTGATGAACTTTTTCGC 58.788 37.500 1.98 0.56 39.56 4.70
5628 6670 8.801299 ACAGGAACTAGATAGACATGTGATATG 58.199 37.037 1.15 0.00 36.02 1.78
5630 6672 9.508642 CTACAGGAACTAGATAGACATGTGATA 57.491 37.037 1.15 0.00 36.02 2.15
5633 6675 7.717436 TCTCTACAGGAACTAGATAGACATGTG 59.283 40.741 1.15 0.00 36.02 3.21
5669 6711 9.857656 ATCTTGGATGAAAGCTAAAATGATAGA 57.142 29.630 0.00 0.00 0.00 1.98
5677 6719 8.806429 TGTTGATATCTTGGATGAAAGCTAAA 57.194 30.769 3.98 0.00 0.00 1.85
5760 6805 8.682128 TGCTTTAATGTCCGTTCAAAATTATC 57.318 30.769 0.00 0.00 0.00 1.75
5773 6818 6.523201 CGAGTAAAACACATGCTTTAATGTCC 59.477 38.462 0.00 0.00 38.75 4.02
5785 6830 4.036262 TGCTGAAAAGCGAGTAAAACACAT 59.964 37.500 0.00 0.00 37.69 3.21
5841 6886 8.362639 AGCAAATACTTTTGACTGTTTCATCAT 58.637 29.630 2.78 0.00 44.11 2.45
5845 6891 7.333528 AGAGCAAATACTTTTGACTGTTTCA 57.666 32.000 2.78 0.00 44.11 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.