Multiple sequence alignment - TraesCS6D01G407500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G407500 chr6D 100.000 6368 0 0 1 6368 473088492 473082125 0.000000e+00 11760.0
1 TraesCS6D01G407500 chr6D 88.660 97 8 1 2397 2493 329077306 329077213 1.450000e-21 115.0
2 TraesCS6D01G407500 chr6A 89.954 3235 195 63 3023 6194 616816651 616819818 0.000000e+00 4054.0
3 TraesCS6D01G407500 chr6A 89.444 701 47 10 3589 4281 101388562 101389243 0.000000e+00 859.0
4 TraesCS6D01G407500 chr6A 87.549 771 60 17 1914 2650 616815553 616816321 0.000000e+00 859.0
5 TraesCS6D01G407500 chr6A 88.588 701 52 11 3589 4281 44562695 44563375 0.000000e+00 826.0
6 TraesCS6D01G407500 chr6A 88.160 701 55 12 3589 4281 437162862 437163542 0.000000e+00 809.0
7 TraesCS6D01G407500 chr6A 93.862 391 10 7 2643 3020 616816366 616816755 1.540000e-160 577.0
8 TraesCS6D01G407500 chr6A 78.561 681 59 56 685 1306 616814191 616814843 1.010000e-97 368.0
9 TraesCS6D01G407500 chr6A 95.906 171 6 1 6193 6363 616819866 616820035 6.290000e-70 276.0
10 TraesCS6D01G407500 chr6A 83.000 300 31 11 1605 1886 616815263 616815560 2.950000e-63 254.0
11 TraesCS6D01G407500 chr6A 94.898 98 5 0 1395 1492 616815034 616815131 3.070000e-33 154.0
12 TraesCS6D01G407500 chr6B 90.018 1693 100 38 4045 5687 718384573 718382900 0.000000e+00 2126.0
13 TraesCS6D01G407500 chr6B 89.925 1062 60 15 3023 4044 718385707 718384653 0.000000e+00 1325.0
14 TraesCS6D01G407500 chr6B 87.218 931 78 23 2139 3032 718386517 718385591 0.000000e+00 1022.0
15 TraesCS6D01G407500 chr6B 79.784 925 60 61 645 1504 718387703 718386841 7.210000e-154 555.0
16 TraesCS6D01G407500 chr6B 91.034 145 13 0 1689 1833 718386677 718386533 5.040000e-46 196.0
17 TraesCS6D01G407500 chr6B 78.063 351 38 23 5845 6181 718382751 718382426 1.090000e-42 185.0
18 TraesCS6D01G407500 chr6B 79.787 282 13 24 5839 6093 152680510 152680774 1.420000e-36 165.0
19 TraesCS6D01G407500 chr6B 78.700 277 25 17 5839 6092 307198304 307198569 3.070000e-33 154.0
20 TraesCS6D01G407500 chr6B 81.443 194 21 8 5839 6027 452389677 452389860 1.850000e-30 145.0
21 TraesCS6D01G407500 chr6B 77.778 279 28 21 5839 6093 49631761 49632029 2.390000e-29 141.0
22 TraesCS6D01G407500 chr6B 93.617 94 6 0 6266 6359 307198608 307198701 2.390000e-29 141.0
23 TraesCS6D01G407500 chr6B 79.798 198 25 8 5839 6027 696046367 696046558 5.180000e-26 130.0
24 TraesCS6D01G407500 chr3D 85.185 1728 182 37 3442 5120 580540251 580541953 0.000000e+00 1705.0
25 TraesCS6D01G407500 chr3D 93.634 644 38 2 1 644 143727351 143726711 0.000000e+00 959.0
26 TraesCS6D01G407500 chr3D 91.900 642 51 1 1 642 148304305 148304945 0.000000e+00 896.0
27 TraesCS6D01G407500 chr3D 84.840 343 34 7 2690 3020 580539639 580539975 4.760000e-86 329.0
28 TraesCS6D01G407500 chr3D 86.179 123 12 3 2397 2519 580539396 580539513 1.860000e-25 128.0
29 TraesCS6D01G407500 chr3A 84.820 1726 185 39 3442 5120 716068417 716070112 0.000000e+00 1664.0
30 TraesCS6D01G407500 chr3A 89.158 701 49 10 3589 4281 465662894 465662213 0.000000e+00 848.0
31 TraesCS6D01G407500 chr3A 88.968 698 53 10 3589 4281 697154773 697155451 0.000000e+00 841.0
32 TraesCS6D01G407500 chr3A 78.924 669 79 27 2396 3019 716067491 716068142 1.290000e-106 398.0
33 TraesCS6D01G407500 chr2A 84.089 1477 139 43 1519 2947 579836263 579834835 0.000000e+00 1338.0
34 TraesCS6D01G407500 chr2A 90.398 427 23 5 3023 3445 579834855 579834443 4.340000e-151 545.0
35 TraesCS6D01G407500 chr3B 85.146 1333 152 26 3442 4745 775826662 775827977 0.000000e+00 1323.0
36 TraesCS6D01G407500 chr3B 78.176 669 72 32 2396 3019 775825750 775826389 6.070000e-95 359.0
37 TraesCS6D01G407500 chr3B 94.444 36 2 0 867 902 7751577 7751542 8.920000e-04 56.5
38 TraesCS6D01G407500 chr2D 94.720 644 31 3 1 644 465115465 465114825 0.000000e+00 998.0
39 TraesCS6D01G407500 chr2D 92.081 644 50 1 1 644 2121207 2121849 0.000000e+00 905.0
40 TraesCS6D01G407500 chr1D 93.789 644 38 2 1 644 32316306 32315665 0.000000e+00 966.0
41 TraesCS6D01G407500 chr1D 93.789 644 36 2 1 644 483710454 483711093 0.000000e+00 965.0
42 TraesCS6D01G407500 chr1D 85.449 914 79 21 1519 2418 437800790 437801663 0.000000e+00 902.0
43 TraesCS6D01G407500 chr1D 88.811 429 27 6 3023 3445 437802149 437802562 2.050000e-139 507.0
44 TraesCS6D01G407500 chr1D 81.518 514 56 20 2468 2947 437801661 437802169 2.780000e-103 387.0
45 TraesCS6D01G407500 chr5D 92.236 644 49 1 1 644 553503796 553503154 0.000000e+00 911.0
46 TraesCS6D01G407500 chr5D 78.676 272 18 17 5640 5890 459349324 459349072 1.850000e-30 145.0
47 TraesCS6D01G407500 chr1A 89.601 702 44 12 3589 4281 95468382 95467701 0.000000e+00 865.0
48 TraesCS6D01G407500 chr1A 89.143 700 49 10 3589 4280 115543947 115543267 0.000000e+00 846.0
49 TraesCS6D01G407500 chr1A 89.047 703 49 11 3589 4281 389948707 389949391 0.000000e+00 846.0
50 TraesCS6D01G407500 chr1A 89.016 701 49 12 3589 4281 45002563 45001883 0.000000e+00 843.0
51 TraesCS6D01G407500 chr4A 89.158 701 49 12 3589 4281 638976466 638977147 0.000000e+00 848.0
52 TraesCS6D01G407500 chr4A 87.963 108 7 2 5839 5944 651808610 651808713 8.670000e-24 122.0
53 TraesCS6D01G407500 chr4A 87.805 82 10 0 1407 1488 723842797 723842878 5.260000e-16 97.1
54 TraesCS6D01G407500 chr7D 89.441 644 67 1 1 644 404696284 404695642 0.000000e+00 811.0
55 TraesCS6D01G407500 chr4B 88.682 645 70 3 1 644 656929836 656930478 0.000000e+00 784.0
56 TraesCS6D01G407500 chr2B 79.023 348 30 21 5845 6182 566507107 566506793 1.400000e-46 198.0
57 TraesCS6D01G407500 chrUn 78.777 278 25 17 5839 6093 163375594 163375860 8.550000e-34 156.0
58 TraesCS6D01G407500 chr7B 81.053 190 21 9 5845 6027 681015659 681015478 3.100000e-28 137.0
59 TraesCS6D01G407500 chr5B 77.385 283 30 17 5839 6093 614375311 614375587 3.100000e-28 137.0
60 TraesCS6D01G407500 chr4D 88.660 97 8 1 2397 2493 433631406 433631499 1.450000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G407500 chr6D 473082125 473088492 6367 True 11760.000000 11760 100.000000 1 6368 1 chr6D.!!$R2 6367
1 TraesCS6D01G407500 chr6A 616814191 616820035 5844 False 934.571429 4054 89.104286 685 6363 7 chr6A.!!$F4 5678
2 TraesCS6D01G407500 chr6A 101388562 101389243 681 False 859.000000 859 89.444000 3589 4281 1 chr6A.!!$F2 692
3 TraesCS6D01G407500 chr6A 44562695 44563375 680 False 826.000000 826 88.588000 3589 4281 1 chr6A.!!$F1 692
4 TraesCS6D01G407500 chr6A 437162862 437163542 680 False 809.000000 809 88.160000 3589 4281 1 chr6A.!!$F3 692
5 TraesCS6D01G407500 chr6B 718382426 718387703 5277 True 901.500000 2126 86.007000 645 6181 6 chr6B.!!$R1 5536
6 TraesCS6D01G407500 chr3D 143726711 143727351 640 True 959.000000 959 93.634000 1 644 1 chr3D.!!$R1 643
7 TraesCS6D01G407500 chr3D 148304305 148304945 640 False 896.000000 896 91.900000 1 642 1 chr3D.!!$F1 641
8 TraesCS6D01G407500 chr3D 580539396 580541953 2557 False 720.666667 1705 85.401333 2397 5120 3 chr3D.!!$F2 2723
9 TraesCS6D01G407500 chr3A 716067491 716070112 2621 False 1031.000000 1664 81.872000 2396 5120 2 chr3A.!!$F2 2724
10 TraesCS6D01G407500 chr3A 465662213 465662894 681 True 848.000000 848 89.158000 3589 4281 1 chr3A.!!$R1 692
11 TraesCS6D01G407500 chr3A 697154773 697155451 678 False 841.000000 841 88.968000 3589 4281 1 chr3A.!!$F1 692
12 TraesCS6D01G407500 chr2A 579834443 579836263 1820 True 941.500000 1338 87.243500 1519 3445 2 chr2A.!!$R1 1926
13 TraesCS6D01G407500 chr3B 775825750 775827977 2227 False 841.000000 1323 81.661000 2396 4745 2 chr3B.!!$F1 2349
14 TraesCS6D01G407500 chr2D 465114825 465115465 640 True 998.000000 998 94.720000 1 644 1 chr2D.!!$R1 643
15 TraesCS6D01G407500 chr2D 2121207 2121849 642 False 905.000000 905 92.081000 1 644 1 chr2D.!!$F1 643
16 TraesCS6D01G407500 chr1D 32315665 32316306 641 True 966.000000 966 93.789000 1 644 1 chr1D.!!$R1 643
17 TraesCS6D01G407500 chr1D 483710454 483711093 639 False 965.000000 965 93.789000 1 644 1 chr1D.!!$F1 643
18 TraesCS6D01G407500 chr1D 437800790 437802562 1772 False 598.666667 902 85.259333 1519 3445 3 chr1D.!!$F2 1926
19 TraesCS6D01G407500 chr5D 553503154 553503796 642 True 911.000000 911 92.236000 1 644 1 chr5D.!!$R2 643
20 TraesCS6D01G407500 chr1A 95467701 95468382 681 True 865.000000 865 89.601000 3589 4281 1 chr1A.!!$R2 692
21 TraesCS6D01G407500 chr1A 115543267 115543947 680 True 846.000000 846 89.143000 3589 4280 1 chr1A.!!$R3 691
22 TraesCS6D01G407500 chr1A 389948707 389949391 684 False 846.000000 846 89.047000 3589 4281 1 chr1A.!!$F1 692
23 TraesCS6D01G407500 chr1A 45001883 45002563 680 True 843.000000 843 89.016000 3589 4281 1 chr1A.!!$R1 692
24 TraesCS6D01G407500 chr4A 638976466 638977147 681 False 848.000000 848 89.158000 3589 4281 1 chr4A.!!$F1 692
25 TraesCS6D01G407500 chr7D 404695642 404696284 642 True 811.000000 811 89.441000 1 644 1 chr7D.!!$R1 643
26 TraesCS6D01G407500 chr4B 656929836 656930478 642 False 784.000000 784 88.682000 1 644 1 chr4B.!!$F1 643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
972 1019 0.249676 GGAGTCGTCTTTCTTCCCCC 59.750 60.0 0.00 0.00 0.00 5.40 F
1157 1229 0.036858 GAACGCCTCTGCTTCCTCTT 60.037 55.0 0.00 0.00 34.43 2.85 F
1910 2220 0.179150 CTCTTTCCGGCGTCTCTCTG 60.179 60.0 6.01 0.00 0.00 3.35 F
3274 3786 0.392706 TGTGACATGTCGGAGCAACT 59.607 50.0 20.54 0.00 0.00 3.16 F
3460 4007 0.895530 CTGCTACCCTCGAGGAAACA 59.104 55.0 33.39 21.64 39.89 2.83 F
5308 6032 0.604511 GGTGGTGTTCCGGTACAAGG 60.605 60.0 16.13 0.00 36.30 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1891 2201 0.179150 CAGAGAGACGCCGGAAAGAG 60.179 60.000 5.05 0.00 0.00 2.85 R
2539 2918 1.701847 ACTGAGTTGGCTCTTGTGGAT 59.298 47.619 0.00 0.00 42.13 3.41 R
3460 4007 0.038744 CCCTCCCACTTCATTGCACT 59.961 55.000 0.00 0.00 0.00 4.40 R
4830 5521 2.151502 CCTCCTTGAGGTAGCTCAGA 57.848 55.000 22.75 16.86 44.25 3.27 R
5337 6061 1.605451 TTGGCGAAGAGAGTCGGGA 60.605 57.895 0.00 0.00 41.40 5.14 R
6142 6934 4.642466 TCCCTTTTCTTTCCTCTCTTCC 57.358 45.455 0.00 0.00 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 4.455877 GGGATGTAATCTTTCCTTATGCCG 59.544 45.833 0.00 0.00 44.71 5.69
388 389 2.267006 CAGCCCTGATGACGTGCT 59.733 61.111 0.00 0.00 0.00 4.40
517 518 1.698506 AACCGCCCATCTGAACAAAA 58.301 45.000 0.00 0.00 0.00 2.44
529 530 7.308435 CCATCTGAACAAAAGTACTTGAATCC 58.692 38.462 9.34 0.08 0.00 3.01
644 646 2.038659 CCAGGAAAACCAAGAAAGCCA 58.961 47.619 0.00 0.00 0.00 4.75
645 647 2.433970 CCAGGAAAACCAAGAAAGCCAA 59.566 45.455 0.00 0.00 0.00 4.52
646 648 3.071457 CCAGGAAAACCAAGAAAGCCAAT 59.929 43.478 0.00 0.00 0.00 3.16
647 649 4.283212 CCAGGAAAACCAAGAAAGCCAATA 59.717 41.667 0.00 0.00 0.00 1.90
648 650 5.221621 CCAGGAAAACCAAGAAAGCCAATAA 60.222 40.000 0.00 0.00 0.00 1.40
649 651 6.287525 CAGGAAAACCAAGAAAGCCAATAAA 58.712 36.000 0.00 0.00 0.00 1.40
660 662 9.977762 CAAGAAAGCCAATAAATAAAATGCTTC 57.022 29.630 0.00 0.00 36.64 3.86
678 680 8.682936 AATGCTTCTATCTAAGTATTGGTTGG 57.317 34.615 0.00 0.00 39.41 3.77
747 751 1.765904 GATGGTTGGGGTTTTGTTGGT 59.234 47.619 0.00 0.00 0.00 3.67
748 752 0.905357 TGGTTGGGGTTTTGTTGGTG 59.095 50.000 0.00 0.00 0.00 4.17
749 753 1.196012 GGTTGGGGTTTTGTTGGTGA 58.804 50.000 0.00 0.00 0.00 4.02
750 754 1.134640 GGTTGGGGTTTTGTTGGTGAC 60.135 52.381 0.00 0.00 0.00 3.67
762 772 2.143925 GTTGGTGACAGCTTGGAGTAC 58.856 52.381 6.17 0.00 44.54 2.73
766 776 3.258372 TGGTGACAGCTTGGAGTACTAAG 59.742 47.826 6.17 0.00 34.98 2.18
769 779 5.393243 GGTGACAGCTTGGAGTACTAAGTAG 60.393 48.000 0.00 0.00 37.03 2.57
771 781 5.648526 TGACAGCTTGGAGTACTAAGTAGAG 59.351 44.000 0.00 0.00 37.03 2.43
772 782 5.817784 ACAGCTTGGAGTACTAAGTAGAGA 58.182 41.667 0.00 0.00 37.03 3.10
773 783 6.246919 ACAGCTTGGAGTACTAAGTAGAGAA 58.753 40.000 0.00 0.00 37.03 2.87
774 784 6.376018 ACAGCTTGGAGTACTAAGTAGAGAAG 59.624 42.308 0.00 0.00 37.03 2.85
775 785 6.600032 CAGCTTGGAGTACTAAGTAGAGAAGA 59.400 42.308 0.00 0.00 37.03 2.87
776 786 6.826741 AGCTTGGAGTACTAAGTAGAGAAGAG 59.173 42.308 0.00 0.00 37.03 2.85
777 787 6.824704 GCTTGGAGTACTAAGTAGAGAAGAGA 59.175 42.308 0.00 0.00 37.03 3.10
778 788 7.337436 GCTTGGAGTACTAAGTAGAGAAGAGAA 59.663 40.741 0.00 0.00 37.03 2.87
779 789 8.795842 TTGGAGTACTAAGTAGAGAAGAGAAG 57.204 38.462 0.00 0.00 0.00 2.85
780 790 8.148437 TGGAGTACTAAGTAGAGAAGAGAAGA 57.852 38.462 0.00 0.00 0.00 2.87
781 791 8.262227 TGGAGTACTAAGTAGAGAAGAGAAGAG 58.738 40.741 0.00 0.00 0.00 2.85
782 792 8.480501 GGAGTACTAAGTAGAGAAGAGAAGAGA 58.519 40.741 0.00 0.00 0.00 3.10
783 793 9.880157 GAGTACTAAGTAGAGAAGAGAAGAGAA 57.120 37.037 0.00 0.00 0.00 2.87
784 794 9.886132 AGTACTAAGTAGAGAAGAGAAGAGAAG 57.114 37.037 0.00 0.00 0.00 2.85
785 795 9.880157 GTACTAAGTAGAGAAGAGAAGAGAAGA 57.120 37.037 0.00 0.00 0.00 2.87
787 797 8.822805 ACTAAGTAGAGAAGAGAAGAGAAGAGA 58.177 37.037 0.00 0.00 0.00 3.10
810 820 4.841422 AGAGAAGGTTCTTCATGTGATGG 58.159 43.478 9.87 0.00 37.73 3.51
820 830 3.003394 TCATGTGATGGGTGTGAATCC 57.997 47.619 0.00 0.00 0.00 3.01
826 836 2.582172 TGATGGGTGTGAATCCCTCATT 59.418 45.455 2.65 0.00 44.84 2.57
830 840 2.239654 GGGTGTGAATCCCTCATTCTCA 59.760 50.000 0.00 0.00 41.58 3.27
831 841 3.117738 GGGTGTGAATCCCTCATTCTCAT 60.118 47.826 3.23 0.00 43.53 2.90
875 918 5.505173 TTCCTTGACTGAAAGAAAAGCAG 57.495 39.130 0.00 0.00 37.43 4.24
876 919 4.780815 TCCTTGACTGAAAGAAAAGCAGA 58.219 39.130 0.00 0.00 37.43 4.26
877 920 4.818546 TCCTTGACTGAAAGAAAAGCAGAG 59.181 41.667 0.00 0.00 37.43 3.35
878 921 4.535116 CTTGACTGAAAGAAAAGCAGAGC 58.465 43.478 0.00 0.00 37.43 4.09
879 922 3.544684 TGACTGAAAGAAAAGCAGAGCA 58.455 40.909 0.00 0.00 37.43 4.26
880 923 3.562973 TGACTGAAAGAAAAGCAGAGCAG 59.437 43.478 0.00 0.00 37.43 4.24
972 1019 0.249676 GGAGTCGTCTTTCTTCCCCC 59.750 60.000 0.00 0.00 0.00 5.40
1077 1124 7.500559 GCCTTCATCTACATCCAAGTAAGAATT 59.499 37.037 0.00 0.00 0.00 2.17
1081 1128 6.248569 TCTACATCCAAGTAAGAATTCCCC 57.751 41.667 0.65 0.00 0.00 4.81
1122 1191 3.006061 TGGAACCAGATCCATCCGT 57.994 52.632 0.00 0.00 44.52 4.69
1140 1212 3.849951 GCTCGCCGGGGATCTGAA 61.850 66.667 22.85 0.00 0.00 3.02
1147 1219 2.427245 CGGGGATCTGAACGCCTCT 61.427 63.158 16.86 0.00 38.05 3.69
1148 1220 1.144936 GGGGATCTGAACGCCTCTG 59.855 63.158 12.82 0.00 37.38 3.35
1150 1222 1.519719 GGATCTGAACGCCTCTGCT 59.480 57.895 0.00 0.00 34.43 4.24
1151 1223 0.107945 GGATCTGAACGCCTCTGCTT 60.108 55.000 0.00 0.00 34.43 3.91
1152 1224 1.285578 GATCTGAACGCCTCTGCTTC 58.714 55.000 0.00 0.00 34.43 3.86
1153 1225 0.107945 ATCTGAACGCCTCTGCTTCC 60.108 55.000 0.00 0.00 34.43 3.46
1154 1226 1.188219 TCTGAACGCCTCTGCTTCCT 61.188 55.000 0.00 0.00 34.43 3.36
1155 1227 0.739112 CTGAACGCCTCTGCTTCCTC 60.739 60.000 0.00 0.00 34.43 3.71
1156 1228 1.188219 TGAACGCCTCTGCTTCCTCT 61.188 55.000 0.00 0.00 34.43 3.69
1157 1229 0.036858 GAACGCCTCTGCTTCCTCTT 60.037 55.000 0.00 0.00 34.43 2.85
1158 1230 0.036858 AACGCCTCTGCTTCCTCTTC 60.037 55.000 0.00 0.00 34.43 2.87
1159 1231 0.902516 ACGCCTCTGCTTCCTCTTCT 60.903 55.000 0.00 0.00 34.43 2.85
1163 1235 1.905215 CCTCTGCTTCCTCTTCTCCAA 59.095 52.381 0.00 0.00 0.00 3.53
1164 1236 2.304180 CCTCTGCTTCCTCTTCTCCAAA 59.696 50.000 0.00 0.00 0.00 3.28
1178 1250 6.627243 TCTTCTCCAAATGCAAATCAGATTG 58.373 36.000 0.00 0.00 0.00 2.67
1207 1311 6.684897 ATTTTCTTGATTGTGATTTCCCCA 57.315 33.333 0.00 0.00 0.00 4.96
1209 1313 7.789202 TTTTCTTGATTGTGATTTCCCCATA 57.211 32.000 0.00 0.00 0.00 2.74
1210 1314 6.773976 TTCTTGATTGTGATTTCCCCATAC 57.226 37.500 0.00 0.00 0.00 2.39
1213 1317 6.377996 TCTTGATTGTGATTTCCCCATACTTG 59.622 38.462 0.00 0.00 0.00 3.16
1214 1318 4.402155 TGATTGTGATTTCCCCATACTTGC 59.598 41.667 0.00 0.00 0.00 4.01
1216 1320 2.290641 TGTGATTTCCCCATACTTGCGT 60.291 45.455 0.00 0.00 0.00 5.24
1217 1321 2.354821 GTGATTTCCCCATACTTGCGTC 59.645 50.000 0.00 0.00 0.00 5.19
1219 1323 2.871096 TTTCCCCATACTTGCGTCTT 57.129 45.000 0.00 0.00 0.00 3.01
1274 1384 6.596106 GTCTTCTTCTTCTTCTAATTCCCACC 59.404 42.308 0.00 0.00 0.00 4.61
1339 1471 4.267349 TCTTTTCTACCTACACCTGCAC 57.733 45.455 0.00 0.00 0.00 4.57
1453 1668 0.463204 CATGATCGACCAGGTCAGCT 59.537 55.000 20.13 2.79 44.28 4.24
1461 1676 2.752358 CAGGTCAGCTCCCAGCAA 59.248 61.111 0.00 0.00 45.56 3.91
1464 1679 1.376553 GGTCAGCTCCCAGCAAGAC 60.377 63.158 10.83 10.83 45.56 3.01
1497 1712 5.347907 CGCACTTGAAGGTACCTACTTTTAG 59.652 44.000 16.67 9.47 0.00 1.85
1504 1719 8.127150 TGAAGGTACCTACTTTTAGACCTTAC 57.873 38.462 16.67 0.62 40.34 2.34
1506 1721 5.960811 AGGTACCTACTTTTAGACCTTACCC 59.039 44.000 14.41 0.00 31.33 3.69
1509 1724 6.309389 ACCTACTTTTAGACCTTACCCATG 57.691 41.667 0.00 0.00 0.00 3.66
1510 1725 6.027482 ACCTACTTTTAGACCTTACCCATGA 58.973 40.000 0.00 0.00 0.00 3.07
1512 1727 7.147532 ACCTACTTTTAGACCTTACCCATGATC 60.148 40.741 0.00 0.00 0.00 2.92
1513 1728 6.002653 ACTTTTAGACCTTACCCATGATCC 57.997 41.667 0.00 0.00 0.00 3.36
1514 1729 5.491078 ACTTTTAGACCTTACCCATGATCCA 59.509 40.000 0.00 0.00 0.00 3.41
1515 1730 5.630415 TTTAGACCTTACCCATGATCCAG 57.370 43.478 0.00 0.00 0.00 3.86
1516 1731 3.136641 AGACCTTACCCATGATCCAGT 57.863 47.619 0.00 0.00 0.00 4.00
1524 1768 2.507471 ACCCATGATCCAGTCTTCTTCC 59.493 50.000 0.00 0.00 0.00 3.46
1540 1784 3.831323 TCTTCCTCAAGGTTCAAATGCA 58.169 40.909 0.00 0.00 36.34 3.96
1598 1874 5.413309 AGATAGATAGGCATTACAGGTGC 57.587 43.478 0.00 0.00 41.78 5.01
1625 1904 4.400884 TCTGTCTGTCTTCCTTGCTCTATC 59.599 45.833 0.00 0.00 0.00 2.08
1628 1916 4.867608 GTCTGTCTTCCTTGCTCTATCAAC 59.132 45.833 0.00 0.00 0.00 3.18
1629 1917 4.528206 TCTGTCTTCCTTGCTCTATCAACA 59.472 41.667 0.00 0.00 0.00 3.33
1631 1919 6.381133 TCTGTCTTCCTTGCTCTATCAACATA 59.619 38.462 0.00 0.00 0.00 2.29
1633 1921 6.070824 TGTCTTCCTTGCTCTATCAACATACA 60.071 38.462 0.00 0.00 0.00 2.29
1635 1923 5.939764 TCCTTGCTCTATCAACATACACT 57.060 39.130 0.00 0.00 0.00 3.55
1636 1924 7.342026 TCTTCCTTGCTCTATCAACATACACTA 59.658 37.037 0.00 0.00 0.00 2.74
1640 1928 7.436673 CCTTGCTCTATCAACATACACTACTTC 59.563 40.741 0.00 0.00 0.00 3.01
1641 1929 7.646548 TGCTCTATCAACATACACTACTTCT 57.353 36.000 0.00 0.00 0.00 2.85
1642 1930 7.708051 TGCTCTATCAACATACACTACTTCTC 58.292 38.462 0.00 0.00 0.00 2.87
1643 1931 7.339466 TGCTCTATCAACATACACTACTTCTCA 59.661 37.037 0.00 0.00 0.00 3.27
1644 1932 8.191446 GCTCTATCAACATACACTACTTCTCAA 58.809 37.037 0.00 0.00 0.00 3.02
1645 1933 9.509855 CTCTATCAACATACACTACTTCTCAAC 57.490 37.037 0.00 0.00 0.00 3.18
1646 1934 9.020731 TCTATCAACATACACTACTTCTCAACA 57.979 33.333 0.00 0.00 0.00 3.33
1647 1935 9.809096 CTATCAACATACACTACTTCTCAACAT 57.191 33.333 0.00 0.00 0.00 2.71
1659 1947 9.014297 ACTACTTCTCAACATAATTTTTGGGAG 57.986 33.333 0.00 0.00 33.73 4.30
1671 1959 0.326264 TTTGGGAGGAGCTCTTCTGC 59.674 55.000 23.45 13.45 0.00 4.26
1682 1970 1.809651 GCTCTTCTGCTCCATGCTACC 60.810 57.143 0.00 0.00 43.37 3.18
1686 1974 2.125147 TGCTCCATGCTACCACGC 60.125 61.111 0.00 0.00 43.37 5.34
1687 1975 3.264897 GCTCCATGCTACCACGCG 61.265 66.667 3.53 3.53 38.95 6.01
1707 2003 1.864435 GCGCCGATAACCTGACTGTAG 60.864 57.143 0.00 0.00 0.00 2.74
1727 2023 1.436600 CGCTTCTGCTGACAGTTCAT 58.563 50.000 3.99 0.00 44.77 2.57
1728 2024 1.128136 CGCTTCTGCTGACAGTTCATG 59.872 52.381 3.99 0.00 44.77 3.07
1742 2038 4.202567 ACAGTTCATGACATTAACCCCTGT 60.203 41.667 8.55 4.93 0.00 4.00
1772 2072 3.340928 TGATGCAACAGAGATGAAGGTG 58.659 45.455 0.00 0.00 0.00 4.00
1877 2187 6.204688 TCTGTGTTTAGCCTTACTTGTTGATG 59.795 38.462 0.00 0.00 0.00 3.07
1881 2191 6.714810 TGTTTAGCCTTACTTGTTGATGTCAT 59.285 34.615 0.00 0.00 0.00 3.06
1882 2192 6.985188 TTAGCCTTACTTGTTGATGTCATC 57.015 37.500 5.83 5.83 0.00 2.92
1883 2193 5.171339 AGCCTTACTTGTTGATGTCATCT 57.829 39.130 13.90 0.00 0.00 2.90
1884 2194 6.299805 AGCCTTACTTGTTGATGTCATCTA 57.700 37.500 13.90 3.60 0.00 1.98
1885 2195 6.109359 AGCCTTACTTGTTGATGTCATCTAC 58.891 40.000 17.38 17.38 35.92 2.59
1886 2196 5.005779 GCCTTACTTGTTGATGTCATCTACG 59.994 44.000 18.48 10.38 37.75 3.51
1887 2197 6.330278 CCTTACTTGTTGATGTCATCTACGA 58.670 40.000 18.48 16.40 37.75 3.43
1888 2198 6.253727 CCTTACTTGTTGATGTCATCTACGAC 59.746 42.308 18.48 10.77 37.75 4.34
1889 2199 4.166523 ACTTGTTGATGTCATCTACGACG 58.833 43.478 18.48 13.72 38.84 5.12
1890 2200 3.145212 TGTTGATGTCATCTACGACGG 57.855 47.619 18.48 0.00 38.84 4.79
1891 2201 1.852895 GTTGATGTCATCTACGACGGC 59.147 52.381 13.90 0.00 38.84 5.68
1892 2202 1.389555 TGATGTCATCTACGACGGCT 58.610 50.000 13.90 0.00 38.84 5.52
1893 2203 1.333931 TGATGTCATCTACGACGGCTC 59.666 52.381 13.90 0.00 38.84 4.70
1894 2204 1.604755 GATGTCATCTACGACGGCTCT 59.395 52.381 5.52 0.00 38.84 4.09
1895 2205 1.460504 TGTCATCTACGACGGCTCTT 58.539 50.000 0.00 0.00 38.84 2.85
1896 2206 1.816835 TGTCATCTACGACGGCTCTTT 59.183 47.619 0.00 0.00 38.84 2.52
1897 2207 2.159421 TGTCATCTACGACGGCTCTTTC 60.159 50.000 0.00 0.00 38.84 2.62
1898 2208 1.404391 TCATCTACGACGGCTCTTTCC 59.596 52.381 0.00 0.00 0.00 3.13
1905 2215 4.436998 CGGCTCTTTCCGGCGTCT 62.437 66.667 6.01 0.00 45.38 4.18
1906 2216 2.509561 GGCTCTTTCCGGCGTCTC 60.510 66.667 6.01 0.00 0.00 3.36
1907 2217 2.574399 GCTCTTTCCGGCGTCTCT 59.426 61.111 6.01 0.00 0.00 3.10
1908 2218 1.517475 GCTCTTTCCGGCGTCTCTC 60.517 63.158 6.01 0.00 0.00 3.20
1909 2219 1.939769 GCTCTTTCCGGCGTCTCTCT 61.940 60.000 6.01 0.00 0.00 3.10
1910 2220 0.179150 CTCTTTCCGGCGTCTCTCTG 60.179 60.000 6.01 0.00 0.00 3.35
1911 2221 0.608308 TCTTTCCGGCGTCTCTCTGA 60.608 55.000 6.01 0.00 0.00 3.27
1912 2222 0.456995 CTTTCCGGCGTCTCTCTGAC 60.457 60.000 6.01 0.00 42.06 3.51
1913 2223 0.894184 TTTCCGGCGTCTCTCTGACT 60.894 55.000 6.01 0.00 43.25 3.41
1914 2224 1.306642 TTCCGGCGTCTCTCTGACTC 61.307 60.000 6.01 0.00 43.25 3.36
1915 2225 1.747367 CCGGCGTCTCTCTGACTCT 60.747 63.158 6.01 0.00 43.25 3.24
1938 2277 5.488341 TGCTACCCTAGTTGATTTTCTCAC 58.512 41.667 0.00 0.00 32.17 3.51
1982 2326 9.695526 TCATCATATTTTAAATGCACATTAGGC 57.304 29.630 0.00 0.00 0.00 3.93
2060 2404 7.095857 ACTCTGATATTTCATCTTCGAATTCGC 60.096 37.037 22.90 4.77 39.60 4.70
2064 2408 1.990799 TCATCTTCGAATTCGCGTGT 58.009 45.000 22.90 6.41 39.60 4.49
2132 2493 3.320826 ACCTTGGCCATGTTTGTAGAAAC 59.679 43.478 6.09 8.49 41.72 2.78
2183 2554 6.039270 GGCACTGCAATAAATGGTATTGAGTA 59.961 38.462 9.68 0.00 37.15 2.59
2214 2586 4.705023 ACTACAATACATTCAGTTTGGGCC 59.295 41.667 0.00 0.00 0.00 5.80
2266 2642 7.042950 GGGAACTTGAAGAATCTAACTCTACC 58.957 42.308 0.00 0.00 0.00 3.18
2330 2708 8.466798 ACCTTAATAAACAAGAATGTGGTATGC 58.533 33.333 0.00 0.00 40.46 3.14
2388 2766 4.765339 TCGACCTGATCTCTTTCTGTACAA 59.235 41.667 0.00 0.00 0.00 2.41
2515 2893 9.153479 TCCTTCATTTCCCAAAAGAAGAAAATA 57.847 29.630 13.10 0.00 34.74 1.40
2552 2932 6.491745 TGTTTTGTTTATATCCACAAGAGCCA 59.508 34.615 1.15 0.00 34.43 4.75
2710 3189 3.935818 TTGTACAACACCCTTCCTGAA 57.064 42.857 3.59 0.00 0.00 3.02
2937 3420 9.289303 GTTACACTCAAATAACATTTATGCAGG 57.711 33.333 0.00 0.00 32.56 4.85
2938 3421 7.466746 ACACTCAAATAACATTTATGCAGGT 57.533 32.000 0.00 0.00 0.00 4.00
2939 3422 7.315142 ACACTCAAATAACATTTATGCAGGTG 58.685 34.615 0.00 0.00 0.00 4.00
2940 3423 7.039784 ACACTCAAATAACATTTATGCAGGTGT 60.040 33.333 0.00 0.00 0.00 4.16
2941 3424 7.274033 CACTCAAATAACATTTATGCAGGTGTG 59.726 37.037 0.00 0.00 0.00 3.82
2942 3425 7.039784 ACTCAAATAACATTTATGCAGGTGTGT 60.040 33.333 0.00 0.00 0.00 3.72
2943 3426 8.341892 TCAAATAACATTTATGCAGGTGTGTA 57.658 30.769 0.00 0.00 0.00 2.90
2944 3427 8.797438 TCAAATAACATTTATGCAGGTGTGTAA 58.203 29.630 0.00 0.00 0.00 2.41
2945 3428 9.416794 CAAATAACATTTATGCAGGTGTGTAAA 57.583 29.630 0.00 0.00 0.00 2.01
2946 3429 9.638239 AAATAACATTTATGCAGGTGTGTAAAG 57.362 29.630 0.00 0.00 0.00 1.85
2947 3430 5.059404 ACATTTATGCAGGTGTGTAAAGC 57.941 39.130 0.00 0.00 0.00 3.51
2948 3431 4.766891 ACATTTATGCAGGTGTGTAAAGCT 59.233 37.500 0.00 0.00 0.00 3.74
2949 3432 5.243730 ACATTTATGCAGGTGTGTAAAGCTT 59.756 36.000 0.00 0.00 0.00 3.74
2950 3433 5.782893 TTTATGCAGGTGTGTAAAGCTTT 57.217 34.783 17.30 17.30 0.00 3.51
2951 3434 6.885952 TTTATGCAGGTGTGTAAAGCTTTA 57.114 33.333 14.96 14.96 0.00 1.85
2952 3435 7.461182 TTTATGCAGGTGTGTAAAGCTTTAT 57.539 32.000 21.28 5.69 0.00 1.40
2953 3436 4.764679 TGCAGGTGTGTAAAGCTTTATG 57.235 40.909 21.28 14.87 0.00 1.90
2954 3437 3.057596 TGCAGGTGTGTAAAGCTTTATGC 60.058 43.478 23.79 23.79 43.29 3.14
2970 3453 7.206981 GCTTTATGCTTAATTGCCTGATAGA 57.793 36.000 0.00 0.00 38.95 1.98
2971 3454 7.651808 GCTTTATGCTTAATTGCCTGATAGAA 58.348 34.615 0.00 0.00 38.95 2.10
2972 3455 8.302438 GCTTTATGCTTAATTGCCTGATAGAAT 58.698 33.333 0.00 0.00 38.95 2.40
2977 3460 8.383318 TGCTTAATTGCCTGATAGAATAGAAC 57.617 34.615 0.00 0.00 0.00 3.01
2978 3461 7.445402 TGCTTAATTGCCTGATAGAATAGAACC 59.555 37.037 0.00 0.00 0.00 3.62
2979 3462 7.445402 GCTTAATTGCCTGATAGAATAGAACCA 59.555 37.037 0.00 0.00 0.00 3.67
2980 3463 9.342308 CTTAATTGCCTGATAGAATAGAACCAA 57.658 33.333 0.00 0.00 0.00 3.67
2981 3464 9.693739 TTAATTGCCTGATAGAATAGAACCAAA 57.306 29.630 0.00 0.00 0.00 3.28
2982 3465 8.773033 AATTGCCTGATAGAATAGAACCAAAT 57.227 30.769 0.00 0.00 0.00 2.32
2983 3466 7.807977 TTGCCTGATAGAATAGAACCAAATC 57.192 36.000 0.00 0.00 0.00 2.17
2984 3467 7.141758 TGCCTGATAGAATAGAACCAAATCT 57.858 36.000 0.00 0.00 0.00 2.40
2985 3468 6.994496 TGCCTGATAGAATAGAACCAAATCTG 59.006 38.462 0.00 0.00 0.00 2.90
2986 3469 6.995091 GCCTGATAGAATAGAACCAAATCTGT 59.005 38.462 0.00 0.00 0.00 3.41
2987 3470 7.500559 GCCTGATAGAATAGAACCAAATCTGTT 59.499 37.037 0.00 0.00 34.01 3.16
2988 3471 9.401058 CCTGATAGAATAGAACCAAATCTGTTT 57.599 33.333 0.00 0.00 31.82 2.83
2994 3477 9.971922 AGAATAGAACCAAATCTGTTTCTTTTG 57.028 29.630 0.00 0.00 33.24 2.44
2995 3478 9.750125 GAATAGAACCAAATCTGTTTCTTTTGT 57.250 29.630 0.00 0.00 31.82 2.83
3008 3491 9.008965 TCTGTTTCTTTTGTAATATTGCTAGCA 57.991 29.630 14.93 14.93 0.00 3.49
3009 3492 9.793252 CTGTTTCTTTTGTAATATTGCTAGCAT 57.207 29.630 20.13 11.28 0.00 3.79
3198 3708 3.843893 AAATTTTGGCCTGCAAGAAGT 57.156 38.095 3.32 0.00 34.07 3.01
3216 3726 5.254901 AGAAGTTGTAGATGTACCGAGAGT 58.745 41.667 0.00 0.00 0.00 3.24
3257 3769 4.327680 GAGGTAGGACTTGAAGCATTTGT 58.672 43.478 0.00 0.00 0.00 2.83
3274 3786 0.392706 TGTGACATGTCGGAGCAACT 59.607 50.000 20.54 0.00 0.00 3.16
3295 3807 5.809001 ACTCTAGATCCAACAGCAAAATGA 58.191 37.500 0.00 0.00 0.00 2.57
3321 3840 2.881403 GCCACAAGGGAGACATGTTCAT 60.881 50.000 0.00 0.00 40.01 2.57
3344 3863 1.063649 GGCATCTTGATGTGCTGCG 59.936 57.895 11.61 0.00 41.04 5.18
3347 3866 1.891178 CATCTTGATGTGCTGCGTTG 58.109 50.000 2.66 0.00 0.00 4.10
3375 3895 6.592870 AGGGCACTAGATTATTTTGGTACTC 58.407 40.000 0.00 0.00 0.00 2.59
3383 3903 9.379791 CTAGATTATTTTGGTACTCGGAAAGTT 57.620 33.333 0.00 0.00 39.55 2.66
3408 3928 5.348986 GTTATGTACGTGGATGTCAGATGT 58.651 41.667 0.00 0.00 0.00 3.06
3437 3958 4.098654 TGTCAATGGTCCAAACGTTGAAAT 59.901 37.500 0.00 0.00 34.52 2.17
3439 3960 3.658757 ATGGTCCAAACGTTGAAATGG 57.341 42.857 9.98 9.98 0.00 3.16
3460 4007 0.895530 CTGCTACCCTCGAGGAAACA 59.104 55.000 33.39 21.64 39.89 2.83
3482 4029 1.380380 CAATGAAGTGGGAGGGGGC 60.380 63.158 0.00 0.00 0.00 5.80
3507 4057 2.225267 GGGGAGGTTCCTGAATTTGGAA 60.225 50.000 9.06 9.06 40.85 3.53
3583 4133 1.449246 GAGTGCAGGCTACCAGCAG 60.449 63.158 3.72 0.00 46.22 4.24
3609 4159 6.697395 TGATTTGTTTAGCTAGCACTCAGTA 58.303 36.000 18.83 0.00 0.00 2.74
3611 4161 7.492669 TGATTTGTTTAGCTAGCACTCAGTATC 59.507 37.037 18.83 11.95 0.00 2.24
3710 4260 8.524487 GCATATTACAAGATAGCTAGTAGGTGT 58.476 37.037 12.17 5.14 0.00 4.16
3720 4270 8.005388 AGATAGCTAGTAGGTGTTCCTCAATTA 58.995 37.037 12.17 0.00 43.94 1.40
3893 4443 7.572523 TGATGATTCTTTGACTGTCTTGTTT 57.427 32.000 9.51 0.00 0.00 2.83
3896 4446 8.862550 ATGATTCTTTGACTGTCTTGTTTTTC 57.137 30.769 9.51 0.00 0.00 2.29
3897 4447 7.825681 TGATTCTTTGACTGTCTTGTTTTTCA 58.174 30.769 9.51 2.27 0.00 2.69
4063 4694 4.460263 ACTTACATGGCAAGACAGTGAAA 58.540 39.130 14.28 0.00 0.00 2.69
4065 4696 5.536161 ACTTACATGGCAAGACAGTGAAATT 59.464 36.000 14.28 0.00 0.00 1.82
4284 4934 1.136500 GAGGCTCTTTACCGTTCGGAT 59.864 52.381 18.28 5.09 0.00 4.18
4388 5038 5.207110 TGCTGCCTACTGATTCTTAGATC 57.793 43.478 0.00 0.00 0.00 2.75
4411 5063 7.312657 TCAGCAGATATGCTTTTCTTTACTG 57.687 36.000 13.21 0.00 43.52 2.74
4416 5068 8.239998 GCAGATATGCTTTTCTTTACTGTCTTT 58.760 33.333 4.74 0.00 0.00 2.52
4632 5305 2.449464 CCATTGGTTCTGGATTGCTGA 58.551 47.619 0.00 0.00 35.70 4.26
4633 5306 3.028850 CCATTGGTTCTGGATTGCTGAT 58.971 45.455 0.00 0.00 35.70 2.90
4746 5426 3.672808 CTCATGTATGCAGATCTTCCCC 58.327 50.000 0.00 0.00 0.00 4.81
4752 5442 1.067295 TGCAGATCTTCCCCTGTGTT 58.933 50.000 0.00 0.00 33.19 3.32
4753 5443 1.425066 TGCAGATCTTCCCCTGTGTTT 59.575 47.619 0.00 0.00 33.19 2.83
4759 5449 6.624423 CAGATCTTCCCCTGTGTTTAAATTG 58.376 40.000 0.00 0.00 0.00 2.32
4789 5480 4.632153 TCTTTGTTGCTGAGACTTACCTC 58.368 43.478 0.00 0.00 0.00 3.85
4830 5521 3.713764 AGATTGACTGGAATTCCGAGGAT 59.286 43.478 19.57 9.50 39.43 3.24
4869 5560 7.574607 AGGAGGTAAGGGTTATTAATCTGTTG 58.425 38.462 0.00 0.00 0.00 3.33
4871 5562 7.498239 GGAGGTAAGGGTTATTAATCTGTTGTC 59.502 40.741 0.00 0.00 0.00 3.18
4903 5594 1.312371 TGCTGTTTCCATAAGGGCGC 61.312 55.000 0.00 0.00 36.21 6.53
5059 5750 2.496899 ATGACAATCAGGGCGACTTT 57.503 45.000 0.00 0.00 0.00 2.66
5123 5815 3.691609 GGTTCCTTGCTAACTCAATCCAG 59.308 47.826 0.00 0.00 0.00 3.86
5126 5818 4.326826 TCCTTGCTAACTCAATCCAGTTG 58.673 43.478 0.00 0.00 37.20 3.16
5134 5826 6.128254 GCTAACTCAATCCAGTTGTTAACCTC 60.128 42.308 2.48 0.00 37.20 3.85
5239 5950 4.508124 CCAGTAGAAAATATGACGGCTCAC 59.492 45.833 0.00 0.00 0.00 3.51
5308 6032 0.604511 GGTGGTGTTCCGGTACAAGG 60.605 60.000 16.13 0.00 36.30 3.61
5531 6258 3.210232 TGGATGACGGGTGTTTGTTTA 57.790 42.857 0.00 0.00 0.00 2.01
5532 6259 3.142951 TGGATGACGGGTGTTTGTTTAG 58.857 45.455 0.00 0.00 0.00 1.85
5533 6260 3.143728 GGATGACGGGTGTTTGTTTAGT 58.856 45.455 0.00 0.00 0.00 2.24
5534 6261 3.566742 GGATGACGGGTGTTTGTTTAGTT 59.433 43.478 0.00 0.00 0.00 2.24
5535 6262 4.037089 GGATGACGGGTGTTTGTTTAGTTT 59.963 41.667 0.00 0.00 0.00 2.66
5798 6553 3.141272 TGGTTCCCTTTATTTGACCTGGT 59.859 43.478 0.00 0.00 0.00 4.00
5817 6572 5.220567 CCTGGTATTTTGTTTGTTTGTGCAC 60.221 40.000 10.75 10.75 0.00 4.57
5818 6573 5.237815 TGGTATTTTGTTTGTTTGTGCACA 58.762 33.333 17.42 17.42 0.00 4.57
5819 6574 5.700832 TGGTATTTTGTTTGTTTGTGCACAA 59.299 32.000 27.96 27.96 34.76 3.33
5820 6575 6.372659 TGGTATTTTGTTTGTTTGTGCACAAT 59.627 30.769 31.48 15.54 36.54 2.71
5821 6576 7.549134 TGGTATTTTGTTTGTTTGTGCACAATA 59.451 29.630 31.48 20.76 36.54 1.90
5828 6583 7.261325 TGTTTGTTTGTGCACAATACAATACT 58.739 30.769 34.50 0.00 37.81 2.12
5829 6584 7.221645 TGTTTGTTTGTGCACAATACAATACTG 59.778 33.333 34.50 0.00 37.81 2.74
5856 6611 1.811359 GCTGCTGCAGAAGACAAGAAT 59.189 47.619 32.30 0.00 39.41 2.40
5890 6650 5.476254 TGTGTTTGAATATTGGTGATGCTGA 59.524 36.000 0.00 0.00 0.00 4.26
5911 6671 6.455360 TGATTTTGAAGTTTGAAGCTGTCT 57.545 33.333 0.00 0.00 0.00 3.41
5912 6672 6.267817 TGATTTTGAAGTTTGAAGCTGTCTG 58.732 36.000 0.00 0.00 0.00 3.51
5913 6673 5.643379 TTTTGAAGTTTGAAGCTGTCTGT 57.357 34.783 0.00 0.00 0.00 3.41
5914 6674 4.882671 TTGAAGTTTGAAGCTGTCTGTC 57.117 40.909 0.00 0.00 0.00 3.51
5939 6699 3.077359 CCATGTGAAAAGAGTCCAGTCC 58.923 50.000 0.00 0.00 0.00 3.85
5942 6702 2.771943 TGTGAAAAGAGTCCAGTCCAGT 59.228 45.455 0.00 0.00 0.00 4.00
5944 6704 3.070302 GTGAAAAGAGTCCAGTCCAGTCT 59.930 47.826 0.00 0.00 0.00 3.24
5945 6705 4.281182 GTGAAAAGAGTCCAGTCCAGTCTA 59.719 45.833 0.00 0.00 0.00 2.59
5946 6706 4.524714 TGAAAAGAGTCCAGTCCAGTCTAG 59.475 45.833 0.00 0.00 0.00 2.43
5947 6707 3.818295 AAGAGTCCAGTCCAGTCTAGT 57.182 47.619 0.00 0.00 0.00 2.57
5948 6708 3.359695 AGAGTCCAGTCCAGTCTAGTC 57.640 52.381 0.00 0.00 0.00 2.59
5950 6710 4.105577 AGAGTCCAGTCCAGTCTAGTCTA 58.894 47.826 0.00 0.00 0.00 2.59
5951 6711 4.163458 AGAGTCCAGTCCAGTCTAGTCTAG 59.837 50.000 0.00 0.00 0.00 2.43
5952 6712 3.847780 AGTCCAGTCCAGTCTAGTCTAGT 59.152 47.826 6.77 0.00 0.00 2.57
5953 6713 4.080751 AGTCCAGTCCAGTCTAGTCTAGTC 60.081 50.000 6.77 1.51 0.00 2.59
5954 6714 3.844804 TCCAGTCCAGTCTAGTCTAGTCA 59.155 47.826 6.77 0.00 0.00 3.41
5955 6715 4.080807 TCCAGTCCAGTCTAGTCTAGTCAG 60.081 50.000 6.77 0.00 0.00 3.51
5956 6716 3.625764 CAGTCCAGTCTAGTCTAGTCAGC 59.374 52.174 6.77 0.00 0.00 4.26
5957 6717 3.264706 AGTCCAGTCTAGTCTAGTCAGCA 59.735 47.826 6.77 0.00 0.00 4.41
5958 6718 4.011023 GTCCAGTCTAGTCTAGTCAGCAA 58.989 47.826 6.77 0.00 0.00 3.91
5959 6719 4.642885 GTCCAGTCTAGTCTAGTCAGCAAT 59.357 45.833 6.77 0.00 0.00 3.56
5960 6720 5.823570 GTCCAGTCTAGTCTAGTCAGCAATA 59.176 44.000 6.77 0.00 0.00 1.90
5961 6721 6.488683 GTCCAGTCTAGTCTAGTCAGCAATAT 59.511 42.308 6.77 0.00 0.00 1.28
5962 6722 6.712998 TCCAGTCTAGTCTAGTCAGCAATATC 59.287 42.308 6.77 0.00 0.00 1.63
5963 6723 6.072175 CCAGTCTAGTCTAGTCAGCAATATCC 60.072 46.154 6.77 0.00 0.00 2.59
5964 6724 6.488344 CAGTCTAGTCTAGTCAGCAATATCCA 59.512 42.308 6.77 0.00 0.00 3.41
6075 6867 1.065636 AGTCAGTCAGTCCCATGCATG 60.066 52.381 20.19 20.19 0.00 4.06
6113 6905 8.292448 TGATGTTTAATGCAGAAGAAAGAAGAC 58.708 33.333 0.00 0.00 0.00 3.01
6137 6929 9.371136 GACAATGACACTGATTAGACTTATTGA 57.629 33.333 0.00 0.00 0.00 2.57
6142 6934 8.246871 TGACACTGATTAGACTTATTGACTGAG 58.753 37.037 0.00 0.00 0.00 3.35
6175 6971 5.514500 AAGAAAAGGGAAGGTAGCACATA 57.486 39.130 0.00 0.00 0.00 2.29
6182 6978 5.139001 AGGGAAGGTAGCACATACTACTAC 58.861 45.833 0.00 0.00 41.88 2.73
6194 6990 7.707035 AGCACATACTACTACTATTTGAGTTGC 59.293 37.037 0.00 0.00 39.81 4.17
6195 6991 7.491372 GCACATACTACTACTATTTGAGTTGCA 59.509 37.037 0.00 0.00 39.81 4.08
6277 7121 7.504924 AAAACGTCTTACATTTTGAGATGGA 57.495 32.000 0.00 0.00 32.11 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 2.124695 GGGATGACTTGGCGGGTC 60.125 66.667 3.24 3.24 0.00 4.46
388 389 5.971792 GTCATCTCATCGATAACGTCTTCAA 59.028 40.000 0.00 0.00 40.69 2.69
529 530 8.352942 GGCTTGAGTATGGGTAAAATATTGAAG 58.647 37.037 0.00 0.00 0.00 3.02
552 553 3.028130 GCCTAAGAGAGTAACAGAGGCT 58.972 50.000 2.77 0.00 43.77 4.58
655 657 7.195374 ACCAACCAATACTTAGATAGAAGCA 57.805 36.000 0.00 0.00 0.00 3.91
673 675 9.398538 TCACAATTATTACATAACCTACCAACC 57.601 33.333 0.00 0.00 0.00 3.77
747 751 5.567430 TCTACTTAGTACTCCAAGCTGTCA 58.433 41.667 0.00 0.00 0.00 3.58
748 752 5.881443 TCTCTACTTAGTACTCCAAGCTGTC 59.119 44.000 0.00 0.00 0.00 3.51
749 753 5.817784 TCTCTACTTAGTACTCCAAGCTGT 58.182 41.667 0.00 0.00 0.00 4.40
750 754 6.600032 TCTTCTCTACTTAGTACTCCAAGCTG 59.400 42.308 0.00 0.00 0.00 4.24
762 772 9.667107 TTCTCTTCTCTTCTCTTCTCTACTTAG 57.333 37.037 0.00 0.00 0.00 2.18
766 776 8.041323 TCTCTTCTCTTCTCTTCTCTTCTCTAC 58.959 40.741 0.00 0.00 0.00 2.59
769 779 7.148171 CCTTCTCTTCTCTTCTCTTCTCTTCTC 60.148 44.444 0.00 0.00 0.00 2.87
771 781 6.434340 ACCTTCTCTTCTCTTCTCTTCTCTTC 59.566 42.308 0.00 0.00 0.00 2.87
772 782 6.314917 ACCTTCTCTTCTCTTCTCTTCTCTT 58.685 40.000 0.00 0.00 0.00 2.85
773 783 5.892348 ACCTTCTCTTCTCTTCTCTTCTCT 58.108 41.667 0.00 0.00 0.00 3.10
774 784 6.434340 AGAACCTTCTCTTCTCTTCTCTTCTC 59.566 42.308 0.00 0.00 29.94 2.87
775 785 6.314917 AGAACCTTCTCTTCTCTTCTCTTCT 58.685 40.000 0.00 0.00 29.94 2.85
776 786 6.590234 AGAACCTTCTCTTCTCTTCTCTTC 57.410 41.667 0.00 0.00 29.94 2.87
777 787 6.993079 GAAGAACCTTCTCTTCTCTTCTCTT 58.007 40.000 6.17 0.00 45.30 2.85
778 788 6.590234 GAAGAACCTTCTCTTCTCTTCTCT 57.410 41.667 6.17 0.00 45.30 3.10
787 797 5.251764 CCATCACATGAAGAACCTTCTCTT 58.748 41.667 0.00 0.00 38.39 2.85
810 820 3.634397 TGAGAATGAGGGATTCACACC 57.366 47.619 0.00 0.00 42.80 4.16
820 830 9.947669 GATGAGATTTTTACAATGAGAATGAGG 57.052 33.333 0.00 0.00 0.00 3.86
826 836 9.745018 AGGAAAGATGAGATTTTTACAATGAGA 57.255 29.630 0.00 0.00 0.00 3.27
831 841 9.367160 AGGAAAGGAAAGATGAGATTTTTACAA 57.633 29.630 0.00 0.00 0.00 2.41
871 914 2.233605 CTGCTCTGCTCTGCTCTGCT 62.234 60.000 0.00 0.00 0.00 4.24
872 915 1.812093 CTGCTCTGCTCTGCTCTGC 60.812 63.158 0.00 0.00 0.00 4.26
873 916 0.179121 CTCTGCTCTGCTCTGCTCTG 60.179 60.000 0.00 0.00 0.00 3.35
875 918 1.519898 GCTCTGCTCTGCTCTGCTC 60.520 63.158 0.00 0.00 0.00 4.26
876 919 2.580276 GCTCTGCTCTGCTCTGCT 59.420 61.111 0.00 0.00 0.00 4.24
877 920 2.512057 GGCTCTGCTCTGCTCTGC 60.512 66.667 0.00 0.00 0.00 4.26
878 921 2.202770 CGGCTCTGCTCTGCTCTG 60.203 66.667 0.00 0.00 0.00 3.35
879 922 2.679642 ACGGCTCTGCTCTGCTCT 60.680 61.111 0.00 0.00 0.00 4.09
880 923 2.508887 CACGGCTCTGCTCTGCTC 60.509 66.667 0.00 0.00 0.00 4.26
1077 1124 4.761304 AGAGGGAGGGGGAGGGGA 62.761 72.222 0.00 0.00 0.00 4.81
1081 1128 2.445654 GAGCAGAGGGAGGGGGAG 60.446 72.222 0.00 0.00 0.00 4.30
1147 1219 2.224843 TGCATTTGGAGAAGAGGAAGCA 60.225 45.455 0.00 0.00 0.00 3.91
1148 1220 2.440409 TGCATTTGGAGAAGAGGAAGC 58.560 47.619 0.00 0.00 0.00 3.86
1150 1222 5.078949 TGATTTGCATTTGGAGAAGAGGAA 58.921 37.500 0.00 0.00 0.00 3.36
1151 1223 4.665451 TGATTTGCATTTGGAGAAGAGGA 58.335 39.130 0.00 0.00 0.00 3.71
1152 1224 4.703575 TCTGATTTGCATTTGGAGAAGAGG 59.296 41.667 0.00 0.00 0.00 3.69
1153 1225 5.892160 TCTGATTTGCATTTGGAGAAGAG 57.108 39.130 0.00 0.00 0.00 2.85
1154 1226 6.434965 TCAATCTGATTTGCATTTGGAGAAGA 59.565 34.615 0.00 0.00 0.00 2.87
1155 1227 6.627243 TCAATCTGATTTGCATTTGGAGAAG 58.373 36.000 0.00 0.00 0.00 2.85
1156 1228 6.593268 TCAATCTGATTTGCATTTGGAGAA 57.407 33.333 0.00 0.00 0.00 2.87
1157 1229 6.785337 ATCAATCTGATTTGCATTTGGAGA 57.215 33.333 0.00 0.00 32.13 3.71
1158 1230 7.265673 AGAATCAATCTGATTTGCATTTGGAG 58.734 34.615 0.00 0.00 46.20 3.86
1159 1231 7.177832 AGAATCAATCTGATTTGCATTTGGA 57.822 32.000 0.00 0.00 46.20 3.53
1213 1317 0.793250 GCACCTGAAGAAGAAGACGC 59.207 55.000 0.00 0.00 0.00 5.19
1214 1318 1.063806 CGCACCTGAAGAAGAAGACG 58.936 55.000 0.00 0.00 0.00 4.18
1216 1320 0.320771 GCCGCACCTGAAGAAGAAGA 60.321 55.000 0.00 0.00 0.00 2.87
1217 1321 0.321122 AGCCGCACCTGAAGAAGAAG 60.321 55.000 0.00 0.00 0.00 2.85
1219 1323 1.188219 AGAGCCGCACCTGAAGAAGA 61.188 55.000 0.00 0.00 0.00 2.87
1310 1423 5.938710 GGTGTAGGTAGAAAAGAAAAGAGGG 59.061 44.000 0.00 0.00 0.00 4.30
1312 1425 6.147985 GCAGGTGTAGGTAGAAAAGAAAAGAG 59.852 42.308 0.00 0.00 0.00 2.85
1353 1485 5.221422 GCGGGGAATGGAATGAATGAATTAA 60.221 40.000 0.00 0.00 0.00 1.40
1358 1490 1.215173 AGCGGGGAATGGAATGAATGA 59.785 47.619 0.00 0.00 0.00 2.57
1359 1491 1.338973 CAGCGGGGAATGGAATGAATG 59.661 52.381 0.00 0.00 0.00 2.67
1363 1496 2.837883 CGCAGCGGGGAATGGAATG 61.838 63.158 7.00 0.00 0.00 2.67
1453 1668 0.391661 GCGATCTTGTCTTGCTGGGA 60.392 55.000 0.00 0.00 0.00 4.37
1461 1676 1.016130 CAAGTGCGGCGATCTTGTCT 61.016 55.000 25.02 6.67 35.34 3.41
1464 1679 0.095935 CTTCAAGTGCGGCGATCTTG 59.904 55.000 26.38 26.38 39.59 3.02
1497 1712 3.041946 AGACTGGATCATGGGTAAGGTC 58.958 50.000 0.00 0.00 0.00 3.85
1504 1719 2.776536 AGGAAGAAGACTGGATCATGGG 59.223 50.000 0.00 0.00 0.00 4.00
1506 1721 4.750021 TGAGGAAGAAGACTGGATCATG 57.250 45.455 0.00 0.00 0.00 3.07
1509 1724 3.517500 ACCTTGAGGAAGAAGACTGGATC 59.482 47.826 3.59 0.00 38.94 3.36
1510 1725 3.525862 ACCTTGAGGAAGAAGACTGGAT 58.474 45.455 3.59 0.00 38.94 3.41
1512 1727 3.071602 TGAACCTTGAGGAAGAAGACTGG 59.928 47.826 3.59 0.00 38.94 4.00
1513 1728 4.342862 TGAACCTTGAGGAAGAAGACTG 57.657 45.455 3.59 0.00 38.94 3.51
1514 1729 5.373812 TTTGAACCTTGAGGAAGAAGACT 57.626 39.130 3.59 0.00 38.94 3.24
1515 1730 5.563671 GCATTTGAACCTTGAGGAAGAAGAC 60.564 44.000 3.59 0.00 38.94 3.01
1516 1731 4.520492 GCATTTGAACCTTGAGGAAGAAGA 59.480 41.667 3.59 0.00 38.94 2.87
1524 1768 3.731652 TTGGTGCATTTGAACCTTGAG 57.268 42.857 9.15 0.00 44.46 3.02
1575 1819 5.799213 GCACCTGTAATGCCTATCTATCTT 58.201 41.667 0.00 0.00 37.08 2.40
1598 1874 2.869636 GCAAGGAAGACAGACAGACAGG 60.870 54.545 0.00 0.00 0.00 4.00
1599 1875 2.036992 AGCAAGGAAGACAGACAGACAG 59.963 50.000 0.00 0.00 0.00 3.51
1600 1876 2.036475 GAGCAAGGAAGACAGACAGACA 59.964 50.000 0.00 0.00 0.00 3.41
1601 1877 2.298729 AGAGCAAGGAAGACAGACAGAC 59.701 50.000 0.00 0.00 0.00 3.51
1602 1878 2.603021 AGAGCAAGGAAGACAGACAGA 58.397 47.619 0.00 0.00 0.00 3.41
1603 1879 4.159321 TGATAGAGCAAGGAAGACAGACAG 59.841 45.833 0.00 0.00 0.00 3.51
1604 1880 4.089361 TGATAGAGCAAGGAAGACAGACA 58.911 43.478 0.00 0.00 0.00 3.41
1605 1881 4.727507 TGATAGAGCAAGGAAGACAGAC 57.272 45.455 0.00 0.00 0.00 3.51
1631 1919 8.576442 CCCAAAAATTATGTTGAGAAGTAGTGT 58.424 33.333 0.00 0.00 0.00 3.55
1633 1921 8.934023 TCCCAAAAATTATGTTGAGAAGTAGT 57.066 30.769 0.00 0.00 0.00 2.73
1635 1923 8.167392 TCCTCCCAAAAATTATGTTGAGAAGTA 58.833 33.333 0.00 0.00 0.00 2.24
1636 1924 7.010160 TCCTCCCAAAAATTATGTTGAGAAGT 58.990 34.615 0.00 0.00 0.00 3.01
1640 1928 5.420104 AGCTCCTCCCAAAAATTATGTTGAG 59.580 40.000 0.00 0.00 0.00 3.02
1641 1929 5.332743 AGCTCCTCCCAAAAATTATGTTGA 58.667 37.500 0.00 0.00 0.00 3.18
1642 1930 5.420104 AGAGCTCCTCCCAAAAATTATGTTG 59.580 40.000 10.93 0.00 0.00 3.33
1643 1931 5.583932 AGAGCTCCTCCCAAAAATTATGTT 58.416 37.500 10.93 0.00 0.00 2.71
1644 1932 5.198602 AGAGCTCCTCCCAAAAATTATGT 57.801 39.130 10.93 0.00 0.00 2.29
1645 1933 5.890419 AGAAGAGCTCCTCCCAAAAATTATG 59.110 40.000 10.93 0.00 0.00 1.90
1646 1934 5.890419 CAGAAGAGCTCCTCCCAAAAATTAT 59.110 40.000 10.93 0.00 0.00 1.28
1647 1935 5.256474 CAGAAGAGCTCCTCCCAAAAATTA 58.744 41.667 10.93 0.00 0.00 1.40
1648 1936 4.085009 CAGAAGAGCTCCTCCCAAAAATT 58.915 43.478 10.93 0.00 0.00 1.82
1671 1959 3.264897 GCGCGTGGTAGCATGGAG 61.265 66.667 15.57 5.89 36.85 3.86
1686 1974 2.104331 AGTCAGGTTATCGGCGCG 59.896 61.111 0.00 0.00 0.00 6.86
1687 1975 0.101759 TACAGTCAGGTTATCGGCGC 59.898 55.000 0.00 0.00 0.00 6.53
1727 2023 3.007940 CAGACAGACAGGGGTTAATGTCA 59.992 47.826 9.08 0.00 46.63 3.58
1728 2024 3.008049 ACAGACAGACAGGGGTTAATGTC 59.992 47.826 0.00 0.00 44.97 3.06
1828 2128 5.013079 AGGGCAATGATTCCTTCGATATACA 59.987 40.000 0.00 0.00 0.00 2.29
1833 2133 2.441001 AGAGGGCAATGATTCCTTCGAT 59.559 45.455 0.00 0.00 34.11 3.59
1835 2135 1.945394 CAGAGGGCAATGATTCCTTCG 59.055 52.381 0.00 0.00 34.11 3.79
1848 2158 2.027100 AGTAAGGCTAAACACAGAGGGC 60.027 50.000 0.00 0.00 0.00 5.19
1881 2191 1.798735 CGGAAAGAGCCGTCGTAGA 59.201 57.895 0.00 0.00 46.07 2.59
1882 2192 4.379221 CGGAAAGAGCCGTCGTAG 57.621 61.111 0.00 0.00 46.07 3.51
1889 2199 2.509561 GAGACGCCGGAAAGAGCC 60.510 66.667 5.05 0.00 0.00 4.70
1890 2200 1.517475 GAGAGACGCCGGAAAGAGC 60.517 63.158 5.05 0.00 0.00 4.09
1891 2201 0.179150 CAGAGAGACGCCGGAAAGAG 60.179 60.000 5.05 0.00 0.00 2.85
1892 2202 0.608308 TCAGAGAGACGCCGGAAAGA 60.608 55.000 5.05 0.00 0.00 2.52
1893 2203 0.456995 GTCAGAGAGACGCCGGAAAG 60.457 60.000 5.05 0.00 37.53 2.62
1894 2204 1.585006 GTCAGAGAGACGCCGGAAA 59.415 57.895 5.05 0.00 37.53 3.13
1895 2205 3.275088 GTCAGAGAGACGCCGGAA 58.725 61.111 5.05 0.00 37.53 4.30
1903 2213 1.919654 AGGGTAGCAGAGTCAGAGAGA 59.080 52.381 0.00 0.00 0.00 3.10
1904 2214 2.435372 AGGGTAGCAGAGTCAGAGAG 57.565 55.000 0.00 0.00 0.00 3.20
1905 2215 2.847449 ACTAGGGTAGCAGAGTCAGAGA 59.153 50.000 0.00 0.00 0.00 3.10
1906 2216 3.290948 ACTAGGGTAGCAGAGTCAGAG 57.709 52.381 0.00 0.00 0.00 3.35
1907 2217 3.010250 TCAACTAGGGTAGCAGAGTCAGA 59.990 47.826 0.00 0.00 0.00 3.27
1908 2218 3.357203 TCAACTAGGGTAGCAGAGTCAG 58.643 50.000 0.00 0.00 0.00 3.51
1909 2219 3.451402 TCAACTAGGGTAGCAGAGTCA 57.549 47.619 0.00 0.00 0.00 3.41
1910 2220 5.346181 AAATCAACTAGGGTAGCAGAGTC 57.654 43.478 0.00 0.00 0.00 3.36
1911 2221 5.485708 AGAAAATCAACTAGGGTAGCAGAGT 59.514 40.000 0.00 0.00 0.00 3.24
1912 2222 5.983540 AGAAAATCAACTAGGGTAGCAGAG 58.016 41.667 0.00 0.00 0.00 3.35
1913 2223 5.483937 TGAGAAAATCAACTAGGGTAGCAGA 59.516 40.000 0.00 0.00 34.02 4.26
1914 2224 5.582665 GTGAGAAAATCAACTAGGGTAGCAG 59.417 44.000 0.00 0.00 40.43 4.24
1915 2225 5.488341 GTGAGAAAATCAACTAGGGTAGCA 58.512 41.667 0.00 0.00 40.43 3.49
1938 2277 6.668541 TGATGAATAAAAGAAGAGGAAGCG 57.331 37.500 0.00 0.00 0.00 4.68
1965 2309 5.065474 GTCTACGGCCTAATGTGCATTTAAA 59.935 40.000 0.00 0.00 32.50 1.52
1966 2310 4.573201 GTCTACGGCCTAATGTGCATTTAA 59.427 41.667 0.00 0.00 32.50 1.52
1969 2313 2.170607 AGTCTACGGCCTAATGTGCATT 59.829 45.455 0.00 2.83 34.93 3.56
1975 2319 2.035576 GGTGGTAGTCTACGGCCTAATG 59.964 54.545 0.00 0.00 0.00 1.90
1982 2326 3.672767 AAAACAGGTGGTAGTCTACGG 57.327 47.619 3.92 0.00 0.00 4.02
2087 2431 8.877195 AGGTCAAAATACTCTCACCTTTAGTAA 58.123 33.333 0.00 0.00 29.52 2.24
2089 2433 7.317722 AGGTCAAAATACTCTCACCTTTAGT 57.682 36.000 0.00 0.00 29.52 2.24
2100 2461 3.763897 ACATGGCCAAGGTCAAAATACTC 59.236 43.478 10.96 0.00 31.67 2.59
2192 2564 4.201910 CGGCCCAAACTGAATGTATTGTAG 60.202 45.833 0.00 0.00 0.00 2.74
2214 2586 3.126171 TCTCGGTAACATTTTGGCATTCG 59.874 43.478 0.00 0.00 0.00 3.34
2266 2642 8.592105 TTCTGCATCCAAAAGAAATGTTAAAG 57.408 30.769 0.00 0.00 0.00 1.85
2330 2708 7.013083 AGCAATAAAGGTTAGCAAGATGAGATG 59.987 37.037 0.00 0.00 0.00 2.90
2333 2711 6.541641 AGAGCAATAAAGGTTAGCAAGATGAG 59.458 38.462 0.00 0.00 0.00 2.90
2538 2917 2.906389 ACTGAGTTGGCTCTTGTGGATA 59.094 45.455 0.00 0.00 42.13 2.59
2539 2918 1.701847 ACTGAGTTGGCTCTTGTGGAT 59.298 47.619 0.00 0.00 42.13 3.41
2710 3189 8.575649 AGAGTTACCGTCCATCATTTATTTTT 57.424 30.769 0.00 0.00 0.00 1.94
2927 3410 5.982890 AAGCTTTACACACCTGCATAAAT 57.017 34.783 0.00 0.00 0.00 1.40
2928 3411 5.782893 AAAGCTTTACACACCTGCATAAA 57.217 34.783 10.72 0.00 0.00 1.40
2929 3412 6.624861 GCATAAAGCTTTACACACCTGCATAA 60.625 38.462 24.85 3.80 41.15 1.90
2930 3413 5.163663 GCATAAAGCTTTACACACCTGCATA 60.164 40.000 24.85 4.18 41.15 3.14
2931 3414 4.380867 GCATAAAGCTTTACACACCTGCAT 60.381 41.667 24.85 6.64 41.15 3.96
2932 3415 3.057596 GCATAAAGCTTTACACACCTGCA 60.058 43.478 24.85 4.79 41.15 4.41
2933 3416 3.501950 GCATAAAGCTTTACACACCTGC 58.498 45.455 20.85 19.80 41.15 4.85
2946 3429 7.206981 TCTATCAGGCAATTAAGCATAAAGC 57.793 36.000 2.09 2.09 46.19 3.51
2951 3434 9.007901 GTTCTATTCTATCAGGCAATTAAGCAT 57.992 33.333 0.00 0.00 35.83 3.79
2952 3435 7.445402 GGTTCTATTCTATCAGGCAATTAAGCA 59.555 37.037 0.00 0.00 35.83 3.91
2953 3436 7.445402 TGGTTCTATTCTATCAGGCAATTAAGC 59.555 37.037 0.00 0.00 0.00 3.09
2954 3437 8.908786 TGGTTCTATTCTATCAGGCAATTAAG 57.091 34.615 0.00 0.00 0.00 1.85
2955 3438 9.693739 TTTGGTTCTATTCTATCAGGCAATTAA 57.306 29.630 0.00 0.00 0.00 1.40
2956 3439 9.866655 ATTTGGTTCTATTCTATCAGGCAATTA 57.133 29.630 0.00 0.00 0.00 1.40
2957 3440 8.773033 ATTTGGTTCTATTCTATCAGGCAATT 57.227 30.769 0.00 0.00 0.00 2.32
2958 3441 8.223330 AGATTTGGTTCTATTCTATCAGGCAAT 58.777 33.333 0.00 0.00 0.00 3.56
2959 3442 7.500227 CAGATTTGGTTCTATTCTATCAGGCAA 59.500 37.037 0.00 0.00 0.00 4.52
2960 3443 6.994496 CAGATTTGGTTCTATTCTATCAGGCA 59.006 38.462 0.00 0.00 0.00 4.75
2961 3444 6.995091 ACAGATTTGGTTCTATTCTATCAGGC 59.005 38.462 0.00 0.00 0.00 4.85
2962 3445 8.970859 AACAGATTTGGTTCTATTCTATCAGG 57.029 34.615 0.00 0.00 0.00 3.86
2982 3465 9.008965 TGCTAGCAATATTACAAAAGAAACAGA 57.991 29.630 16.84 0.00 0.00 3.41
2983 3466 9.793252 ATGCTAGCAATATTACAAAAGAAACAG 57.207 29.630 23.54 0.00 0.00 3.16
3003 3486 6.798315 AAATGCTTGTATCAGCTATGCTAG 57.202 37.500 0.00 0.00 40.79 3.42
3004 3487 8.260270 CATAAATGCTTGTATCAGCTATGCTA 57.740 34.615 0.00 0.00 40.79 3.49
3005 3488 7.142306 CATAAATGCTTGTATCAGCTATGCT 57.858 36.000 0.00 0.00 40.79 3.79
3022 3505 2.423185 TCTTTCGGCACCTGCATAAATG 59.577 45.455 0.00 0.00 44.36 2.32
3037 3520 5.486095 GCATAAAGCAAGTGTTTCTTTCG 57.514 39.130 0.00 0.00 44.79 3.46
3198 3708 4.084287 ACCAACTCTCGGTACATCTACAA 58.916 43.478 0.00 0.00 34.02 2.41
3216 3726 4.721776 ACCTCCATCTAGATTTGCTACCAA 59.278 41.667 1.33 0.00 0.00 3.67
3257 3769 0.969149 AGAGTTGCTCCGACATGTCA 59.031 50.000 24.93 6.19 0.00 3.58
3274 3786 5.809001 AGTCATTTTGCTGTTGGATCTAGA 58.191 37.500 0.00 0.00 0.00 2.43
3295 3807 1.729586 TGTCTCCCTTGTGGCTAAGT 58.270 50.000 0.00 0.00 0.00 2.24
3321 3840 2.029739 CAGCACATCAAGATGCCACAAA 60.030 45.455 9.85 0.00 43.12 2.83
3344 3863 7.012421 CCAAAATAATCTAGTGCCCTCTACAAC 59.988 40.741 0.00 0.00 0.00 3.32
3347 3866 6.592870 ACCAAAATAATCTAGTGCCCTCTAC 58.407 40.000 0.00 0.00 0.00 2.59
3375 3895 3.123959 CCACGTACATAACCAACTTTCCG 59.876 47.826 0.00 0.00 0.00 4.30
3383 3903 3.764972 TCTGACATCCACGTACATAACCA 59.235 43.478 0.00 0.00 0.00 3.67
3408 3928 4.000325 CGTTTGGACCATTGACATCACTA 59.000 43.478 0.00 0.00 0.00 2.74
3439 3960 1.135053 GTTTCCTCGAGGGTAGCAGAC 60.135 57.143 30.80 12.84 36.25 3.51
3460 4007 0.038744 CCCTCCCACTTCATTGCACT 59.961 55.000 0.00 0.00 0.00 4.40
3495 4045 9.143631 GAAAAGATACAATGTTCCAAATTCAGG 57.856 33.333 0.00 0.00 0.00 3.86
3583 4133 6.314896 ACTGAGTGCTAGCTAAACAAATCATC 59.685 38.462 17.23 0.00 0.00 2.92
3609 4159 3.242011 ACACATCAAAGGCAAAAGGGAT 58.758 40.909 0.00 0.00 0.00 3.85
3611 4161 3.132925 CAACACATCAAAGGCAAAAGGG 58.867 45.455 0.00 0.00 0.00 3.95
3720 4270 7.939039 TCATCAACTCCTAAGAAAACACTCATT 59.061 33.333 0.00 0.00 0.00 2.57
3893 4443 4.462508 TGGCATGCGGAAAATATTGAAA 57.537 36.364 12.44 0.00 0.00 2.69
3896 4446 4.232221 GAGATGGCATGCGGAAAATATTG 58.768 43.478 12.44 0.00 0.00 1.90
3897 4447 3.890756 TGAGATGGCATGCGGAAAATATT 59.109 39.130 12.44 0.00 0.00 1.28
4040 4590 4.882842 TCACTGTCTTGCCATGTAAGTA 57.117 40.909 6.79 0.00 0.00 2.24
4041 4591 3.769739 TCACTGTCTTGCCATGTAAGT 57.230 42.857 6.79 0.00 0.00 2.24
4042 4592 5.633830 ATTTCACTGTCTTGCCATGTAAG 57.366 39.130 0.00 0.00 0.00 2.34
4043 4593 7.701539 ATAATTTCACTGTCTTGCCATGTAA 57.298 32.000 0.00 0.00 0.00 2.41
4284 4934 2.528564 CATCCAAGCCCAGGAAAGAAA 58.471 47.619 0.00 0.00 38.93 2.52
4411 5063 9.003658 TCAAGGAAGAAACAGATGATAAAAGAC 57.996 33.333 0.00 0.00 0.00 3.01
4416 5068 8.156820 TCTTGTCAAGGAAGAAACAGATGATAA 58.843 33.333 12.66 0.00 0.00 1.75
4589 5241 2.742589 TCAAATATTGTTACGGCGTGCA 59.257 40.909 24.86 18.33 0.00 4.57
4590 5242 3.350912 CTCAAATATTGTTACGGCGTGC 58.649 45.455 24.86 15.79 0.00 5.34
4591 5243 3.350912 GCTCAAATATTGTTACGGCGTG 58.649 45.455 24.86 1.06 0.00 5.34
4592 5244 2.353579 GGCTCAAATATTGTTACGGCGT 59.646 45.455 19.64 19.64 0.00 5.68
4593 5245 2.353269 TGGCTCAAATATTGTTACGGCG 59.647 45.455 4.80 4.80 0.00 6.46
4632 5305 9.758651 GAAGAACAAAAACCCAAGTGTAAATAT 57.241 29.630 0.00 0.00 0.00 1.28
4633 5306 8.198778 GGAAGAACAAAAACCCAAGTGTAAATA 58.801 33.333 0.00 0.00 0.00 1.40
4752 5442 9.624697 CAGCAACAAAGAGCTTATACAATTTAA 57.375 29.630 0.00 0.00 39.50 1.52
4753 5443 9.008965 TCAGCAACAAAGAGCTTATACAATTTA 57.991 29.630 0.00 0.00 39.50 1.40
4759 5449 5.872070 AGTCTCAGCAACAAAGAGCTTATAC 59.128 40.000 0.00 0.00 39.50 1.47
4830 5521 2.151502 CCTCCTTGAGGTAGCTCAGA 57.848 55.000 22.75 16.86 44.25 3.27
4869 5560 3.118905 ACAGCAACTTTCTCTCTGGAC 57.881 47.619 0.00 0.00 0.00 4.02
4871 5562 3.251972 GGAAACAGCAACTTTCTCTCTGG 59.748 47.826 0.00 0.00 0.00 3.86
4903 5594 3.124636 GTCACCAACACAAGTATTAGGCG 59.875 47.826 0.00 0.00 0.00 5.52
5074 5765 6.071952 TCCACTCTTCAAATATTCCAAACTGC 60.072 38.462 0.00 0.00 0.00 4.40
5123 5815 6.791303 TGTGACAATGAAAGAGGTTAACAAC 58.209 36.000 8.10 0.58 0.00 3.32
5126 5818 7.202016 TCATGTGACAATGAAAGAGGTTAAC 57.798 36.000 0.00 0.00 33.63 2.01
5134 5826 4.508461 TTGGCTCATGTGACAATGAAAG 57.492 40.909 11.98 0.00 36.16 2.62
5201 5911 8.418597 TTTTCTACTGGACACTATAACACTCT 57.581 34.615 0.00 0.00 0.00 3.24
5239 5950 3.562557 CCGTCCTGGGAAAATAAATACCG 59.437 47.826 0.00 0.00 0.00 4.02
5241 5952 4.945543 ACACCGTCCTGGGAAAATAAATAC 59.054 41.667 0.00 0.00 44.64 1.89
5243 5954 4.042271 ACACCGTCCTGGGAAAATAAAT 57.958 40.909 0.00 0.00 44.64 1.40
5316 6040 1.893801 CCCACCAGGTATATCCGTCTC 59.106 57.143 0.00 0.00 41.99 3.36
5337 6061 1.605451 TTGGCGAAGAGAGTCGGGA 60.605 57.895 0.00 0.00 41.40 5.14
5487 6214 3.052869 CCATCCATCCATCCATCCATCAT 60.053 47.826 0.00 0.00 0.00 2.45
5489 6216 2.579400 TCCATCCATCCATCCATCCATC 59.421 50.000 0.00 0.00 0.00 3.51
5490 6217 2.651190 TCCATCCATCCATCCATCCAT 58.349 47.619 0.00 0.00 0.00 3.41
5491 6218 2.136974 TCCATCCATCCATCCATCCA 57.863 50.000 0.00 0.00 0.00 3.41
5492 6219 2.357881 CCATCCATCCATCCATCCATCC 60.358 54.545 0.00 0.00 0.00 3.51
5798 6553 8.479313 TGTATTGTGCACAAACAAACAAAATA 57.521 26.923 34.06 15.91 42.98 1.40
5817 6572 7.747799 GCAGCAGCATTATACAGTATTGTATTG 59.252 37.037 15.18 10.08 42.80 1.90
5818 6573 7.445096 TGCAGCAGCATTATACAGTATTGTATT 59.555 33.333 15.18 0.00 45.43 1.89
5819 6574 7.369803 GCAGCAGCATTATACAGTATTGTAT 57.630 36.000 14.48 14.48 44.98 2.29
5820 6575 6.785488 GCAGCAGCATTATACAGTATTGTA 57.215 37.500 0.05 0.05 41.35 2.41
5821 6576 5.679734 GCAGCAGCATTATACAGTATTGT 57.320 39.130 0.00 0.00 41.58 2.71
5850 6605 7.697352 TCAAACACAAGCAACAATATTCTTG 57.303 32.000 11.23 11.23 41.07 3.02
5856 6611 8.147058 ACCAATATTCAAACACAAGCAACAATA 58.853 29.630 0.00 0.00 0.00 1.90
5890 6650 6.096001 AGACAGACAGCTTCAAACTTCAAAAT 59.904 34.615 0.00 0.00 0.00 1.82
5911 6671 4.380531 GACTCTTTTCACATGGACAGACA 58.619 43.478 0.00 0.00 0.00 3.41
5912 6672 3.748568 GGACTCTTTTCACATGGACAGAC 59.251 47.826 0.00 0.00 0.00 3.51
5913 6673 3.390967 TGGACTCTTTTCACATGGACAGA 59.609 43.478 0.00 0.00 0.00 3.41
5914 6674 3.743521 TGGACTCTTTTCACATGGACAG 58.256 45.455 0.00 0.00 0.00 3.51
5939 6699 6.488344 TGGATATTGCTGACTAGACTAGACTG 59.512 42.308 16.55 14.09 0.00 3.51
5942 6702 7.177568 GGATTGGATATTGCTGACTAGACTAGA 59.822 40.741 16.55 0.00 0.00 2.43
5944 6704 6.782494 TGGATTGGATATTGCTGACTAGACTA 59.218 38.462 0.00 0.00 0.00 2.59
5945 6705 5.604231 TGGATTGGATATTGCTGACTAGACT 59.396 40.000 0.00 0.00 0.00 3.24
5946 6706 5.858381 TGGATTGGATATTGCTGACTAGAC 58.142 41.667 0.00 0.00 0.00 2.59
5947 6707 6.043590 ACATGGATTGGATATTGCTGACTAGA 59.956 38.462 0.00 0.00 0.00 2.43
5948 6708 6.148976 CACATGGATTGGATATTGCTGACTAG 59.851 42.308 0.00 0.00 0.00 2.57
5950 6710 4.825634 CACATGGATTGGATATTGCTGACT 59.174 41.667 0.00 0.00 0.00 3.41
5951 6711 4.581824 ACACATGGATTGGATATTGCTGAC 59.418 41.667 0.00 0.00 0.00 3.51
5952 6712 4.795469 ACACATGGATTGGATATTGCTGA 58.205 39.130 0.00 0.00 0.00 4.26
5953 6713 6.829229 ATACACATGGATTGGATATTGCTG 57.171 37.500 0.00 0.00 0.00 4.41
5954 6714 8.554870 AGATATACACATGGATTGGATATTGCT 58.445 33.333 0.00 0.00 0.00 3.91
5955 6715 8.743085 AGATATACACATGGATTGGATATTGC 57.257 34.615 0.00 0.00 0.00 3.56
5958 6718 9.276791 ACAGAGATATACACATGGATTGGATAT 57.723 33.333 0.00 0.00 0.00 1.63
5959 6719 8.670521 ACAGAGATATACACATGGATTGGATA 57.329 34.615 0.00 0.00 0.00 2.59
5960 6720 7.457218 AGACAGAGATATACACATGGATTGGAT 59.543 37.037 0.00 0.00 0.00 3.41
5961 6721 6.784473 AGACAGAGATATACACATGGATTGGA 59.216 38.462 0.00 0.00 0.00 3.53
5962 6722 7.002250 AGACAGAGATATACACATGGATTGG 57.998 40.000 0.00 0.00 0.00 3.16
5963 6723 7.813627 CAGAGACAGAGATATACACATGGATTG 59.186 40.741 0.00 0.00 0.00 2.67
5964 6724 7.508636 ACAGAGACAGAGATATACACATGGATT 59.491 37.037 0.00 0.00 0.00 3.01
6113 6905 9.376075 AGTCAATAAGTCTAATCAGTGTCATTG 57.624 33.333 0.00 0.00 0.00 2.82
6137 6929 5.221823 CCTTTTCTTTCCTCTCTTCCTCAGT 60.222 44.000 0.00 0.00 0.00 3.41
6142 6934 4.642466 TCCCTTTTCTTTCCTCTCTTCC 57.358 45.455 0.00 0.00 0.00 3.46
6277 7121 6.978261 TCCTCCCACTTTACTACTACTACAT 58.022 40.000 0.00 0.00 0.00 2.29
6333 7177 8.581253 TCTTTCTTTCTTTCTTTCCTTCTTGT 57.419 30.769 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.